Pregenerated sensors for CCDC201 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000087512Ensembl transcript IDs: ENSMUST00000122910.3
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | CATTGTGTGGAATCTGAAGTTCCTGTGCACAGTCCCAGCTGCTGGCCCACTCCTATGCTAAGTGGCCCCTaGGCTTGGCCAGGGAGCTCA | + |
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Preference number: 4 (lower is better) Translates to: HCVESEVPVHSPSCWPTPMLSGP*AWPGSS Trigger: TGAGCTCCCTGGCCAAGCCCAGGGGCCACTTAGCAT...AGGAGTGGGCCAGCAGCTGGGACTGTGCACAGGAACTTCAGATTCCACACAATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122910.3 |
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| CDS-3UTR TCA 90 bp | CATTGTGTGGAATCTGAAGTTCCTGTGCACAGTCCCAGCTGCTGGCCCACTCCTCTGGTTCAAGGAGGCTaGCATGCAGGGTCCTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: HCVESEVPVHSPSCWPTPLVQGG*HAGSFL Trigger: GAGGAAGGACCCTGCATGTCAGCCTCCTTGAACCAG...AGGAGTGGGCCAGCAGCTGGGACTGTGCACAGGAACTTCAGATTCCACACAATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000122910.3 |
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| CDS-3UTR CCA 90 bp | TTAGAACATTGTGTGGAATCTGAAGTTCCTGTGCACAGTCCCAGCTGCTGGCCCAGTGGCCCCTGGGCTTaGCCAGGGAGCTCAGTGCTA | + |
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Preference number: 4 (lower is better) Translates to: LEHCVESEVPVHSPSCWPSGPWA*PGSSVL Trigger: TAGCACTGAGCTCCCTGGCCAAGCCCAGGGGCCACT...GGGCCAGCAGCTGGGACTGTGCACAGGAACTTCAGATTCCACACAATGTTCTAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122910.3 |
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| CDS-3UTR TCA 90 bp | CATTGTGTGGAATCTGAAGTTCCTGTGCACAGTCCCAGCTGCTGGCCCACTCCTGCCTCCTCAATTTCCTaGAGCATCTGGGCCTCCCAT | + |
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Preference number: 4 (lower is better) Translates to: HCVESEVPVHSPSCWPTPASSIS*SIWASH Trigger: ATGGGAGGCCCAGATGCTTCAGGAAATTGAGGAGGC...AGGAGTGGGCCAGCAGCTGGGACTGTGCACAGGAACTTCAGATTCCACACAATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000122910.3 |
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| CDS-3UTR GCA 90 bp | CATTGTGTGGAATCTGAAGTTCCTGTGCACAGTCCCAGCTGCTGGCCCACTCCTTCAAGGAGGCTGACATaGAGGGTCCTTCCTCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: HCVESEVPVHSPSCWPTPSRRLT*RVLPLQ Trigger: CTGCAGAGGAAGGACCCTGCATGTCAGCCTCCTTGA...AGGAGTGGGCCAGCAGCTGGGACTGTGCACAGGAACTTCAGATTCCACACAATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000122910.3 |
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| CDS-3UTR TCA 90 bp | CATTGTGTGGAATCTGAAGTTCCTGTGCACAGTCCCAGCTGCTGGCCCACTCCTGCCTCTGTCTTCTTCTaGTGCTGCTCCTGGTTCAAG | + |
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Preference number: 4 (lower is better) Translates to: HCVESEVPVHSPSCWPTPASVFF*CCSWFK Trigger: CTTGAACCAGGAGCAGCATCAGAAGAAGACAGAGGC...AGGAGTGGGCCAGCAGCTGGGACTGTGCACAGGAACTTCAGATTCCACACAATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000122910.3 |
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| CDS-3UTR TCA 90 bp | CATTGTGTGGAATCTGAAGTTCCTGTGCACAGTCCCAGCTGCTGGCCCACTCCTGATTCCAGGCATTCCTaGGTTCTTTGGCCAGCTCGT | + |
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Preference number: 4 (lower is better) Translates to: HCVESEVPVHSPSCWPTPDSRHS*VLWPAR Trigger: ACGAGCTGGCCAAAGAACTCAGGAATGCCTGGAATC...AGGAGTGGGCCAGCAGCTGGGACTGTGCACAGGAACTTCAGATTCCACACAATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000122910.3 |
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| CDS-3UTR CCA 90 bp | CATTGTGTGGAATCTGAAGTTCCTGTGCACAGTCCCAGCTGCTGGCCCACTCCTAAGGCAGCAGGGGCCTaGGGATCTATCCTAACTGTA | + |
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Preference number: 4 (lower is better) Translates to: HCVESEVPVHSPSCWPTPKAAGA*GSILTV Trigger: TACAGTTAGGATAGATCCCCAGGCCCCTGCTGCCTT...AGGAGTGGGCCAGCAGCTGGGACTGTGCACAGGAACTTCAGATTCCACACAATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122910.3 |
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| CDS-3UTR GCA 90 bp | TTAGAACATTGTGTGGAATCTGAAGTTCCTGTGCACAGTCCCAGCTGCTGGCCCGAATGGGGCCCCTCCTaGTCGCTGGAACTCTCTAAA | + |
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Preference number: 4 (lower is better) Translates to: LEHCVESEVPVHSPSCWPEWGPS*SLELSK Trigger: TTTAGAGAGTTCCAGCGAGCAGGAGGGGCCCCATTC...GGGCCAGCAGCTGGGACTGTGCACAGGAACTTCAGATTCCACACAATGTTCTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000122910.3 |
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| CDS-3UTR TCA 90 bp | CATTGTGTGGAATCTGAAGTTCCTGTGCACAGTCCCAGCTGCTGGCCCACTCCTTCACTAGAGAGGAGCTaGATTCAGGAATCTCTGTGT | + |
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Preference number: 4 (lower is better) Translates to: HCVESEVPVHSPSCWPTPSLERS*IQESLC Trigger: ACACAGAGATTCCTGAATTCAGCTCCTCTCTAGTGA...AGGAGTGGGCCAGCAGCTGGGACTGTGCACAGGAACTTCAGATTCCACACAATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000122910.3 |
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| CDS-3UTR GCA 90 bp | TTAGAACATTGTGTGGAATCTGAAGTTCCTGTGCACAGTCCCAGCTGCTGGCCCAAGTTCATGATGAACTaGCTCCTCAATTTCCTGAAG | + |
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Preference number: 4 (lower is better) Translates to: LEHCVESEVPVHSPSCWPKFMMN*LLNFLK Trigger: CTTCAGGAAATTGAGGAGGCAGTTCATCATGAACTT...GGGCCAGCAGCTGGGACTGTGCACAGGAACTTCAGATTCCACACAATGTTCTAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000122910.3 |
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| CDS-3UTR CAA 90 bp | CATTGTGTGGAATCTGAAGTTCCTGTGCACAGTCCCAGCTGCTGGCCCACTCCTAAGTGGCCCCTGGGCTaGGCCAGGGAGCTCAGTGCT | + |
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Preference number: 5 (lower is better) Translates to: HCVESEVPVHSPSCWPTPKWPLG*ARELSA Trigger: AGCACTGAGCTCCCTGGCCAAGCCCAGGGGCCACTT...AGGAGTGGGCCAGCAGCTGGGACTGTGCACAGGAACTTCAGATTCCACACAATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122910.3 |
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| CDS-3UTR CAA 90 bp | TTAGAACATTGTGTGGAATCTGAAGTTCCTGTGCACAGTCCCAGCTGCTGGCCCTCTTTGGCCAGCTCGTaGCCTGCAGGGCCTCTGTCT | + |
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Preference number: 5 (lower is better) Translates to: LEHCVESEVPVHSPSCWPSLASS*PAGPLS Trigger: AGACAGAGGCCCTGCAGGCAACGAGCTGGCCAAAGA...GGGCCAGCAGCTGGGACTGTGCACAGGAACTTCAGATTCCACACAATGTTCTAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000122910.3 |
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| CDS GCA 90 bp | CTCAGTGCTAAGGACCCCCTCTTGGATGGTAAGTTCATGATGAACTaGCTCCTCAATTTCCTGAAGCATCTGGGCCTCCCATTGCCGCAA | + |
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Preference number: 5 (lower is better) Translates to: LSAKDPLLDGKFMMN*LLNFLKHLGLPLPQ Trigger: TTGCGGCAATGGGAGGCCCAGATGCTTCAGGAAATTGAGGAGGCAGTTCATCATGAACTTACCATCCAAGAGGGGGTCCTTAGCACTGAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000122910.3 |
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| CDS GCA 90 bp | CAGGGTCCTTCCTCTGCAGCTAAATGGTCTGAATGGGGCCCCTCCTaGTCGCTGGAACTCTCTAAATCCTCAACAGTTGAAAGCCTTTTT | + |
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Preference number: 5 (lower is better) Translates to: QGPSSAAKWSEWGPS*SLELSKSSTVESLF Trigger: AAAAAGGCTTTCAACTGTTGAGGATTTAGAGAGTTCCAGCGAGCAGGAGGGGCCCCATTCAGACCATTTAGCTGCAGAGGAAGGACCCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000122910.3 |
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| CDS-3UTR CAA 90 bp | TTAGAACATTGTGTGGAATCTGAAGTTCCTGTGCACAGTCCCAGCTGCTGGCCCGCTAAGGACCCCCTCTaGGATGGTAAGTTCATGATG | + |
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Preference number: 5 (lower is better) Translates to: LEHCVESEVPVHSPSCWPAKDPL*DGKFMM Trigger: CATCATGAACTTACCATCCAAGAGGGGGTCCTTAGC...GGGCCAGCAGCTGGGACTGTGCACAGGAACTTCAGATTCCACACAATGTTCTAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000122910.3 |
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| CDS CAA 72 bp | TTCCTGAAGCATCTGGGCCTCCCATTGCCGCAAGCGTaGCATCGCAGCTGCCCGCTTCTTTGGGTCTCGTCT | + |
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Preference number: 6 (lower is better) Translates to: FLKHLGLPLPQA*HRSCPLLWVSS Trigger: AGACGAGACCCAAAGAAGCGGGCAGCTGCGATGCAACGCTTGCGGCAATGGGAGGCCCAGATGCTTCAGGAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000122910.3 |
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| CDS CCA 72 bp | GGATCTATCCTAACTGTACTGATGCTAAGTGGCCCCTaGGCTTGGCCAGGGAGCTCAGTGCTAAGGACCCCC | + |
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Preference number: 6 (lower is better) Translates to: GSILTVLMLSGP*AWPGSSVLRTP Trigger: GGGGGTCCTTAGCACTGAGCTCCCTGGCCAAGCCCAGGGGCCACTTAGCATCAGTACAGTTAGGATAGATCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122910.3 |
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| CDS CCA 72 bp | GGCCTGGGGATCTATCCTAACTGTACTGATGCTAAGTaGCCCCTGGGCTTGGCCAGGGAGCTCAGTGCTAAG | + |
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Preference number: 6 (lower is better) Translates to: GLGIYPNCTDAK*PLGLARELSAK Trigger: CTTAGCACTGAGCTCCCTGGCCAAGCCCAGGGGCCACTTAGCATCAGTACAGTTAGGATAGATCCCCAGGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000122910.3 |
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| CDS CAA 72 bp | TGCCTCCTCAATTTCCTGAAGCATCTGGGCCTCCCATaGCCGCAAGCGTTGCATCGCAGCTGCCCGCTTCTT | + |
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Preference number: 6 (lower is better) Translates to: CLLNFLKHLGLP*PQALHRSCPLL Trigger: AAGAAGCGGGCAGCTGCGATGCAACGCTTGCGGCAATGGGAGGCCCAGATGCTTCAGGAAATTGAGGAGGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000122910.3 |
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| CDS CAA 90 bp | TGGCCCCTGGGCTTGGCCAGGGAGCTCAGTGCTAAGGACCCCCTCTaGGATGGTAAGTTCATGATGAACTGCCTCCTCAATTTCCTGAAG | + |
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Preference number: 6 (lower is better) Translates to: WPLGLARELSAKDPL*DGKFMMNCLLNFLK Trigger: CTTCAGGAAATTGAGGAGGCAGTTCATCATGAACTTACCATCCAAGAGGGGGTCCTTAGCACTGAGCTCCCTGGCCAAGCCCAGGGGCCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000122910.3 |
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| CDS CAA 72 bp | GGCTTGGCCAGGGAGCTCAGTGCTAAGGACCCCCTCTaGGATGGTAAGTTCATGATGAACTGCCTCCTCAAT | + |
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Preference number: 6 (lower is better) Translates to: GLARELSAKDPL*DGKFMMNCLLN Trigger: ATTGAGGAGGCAGTTCATCATGAACTTACCATCCAAGAGGGGGTCCTTAGCACTGAGCTCCCTGGCCAAGCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000122910.3 |
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| CDS CAA 90 bp | TCTTTCGACAGGCGATGTCTGAGATTCCAGGCATTCCTGAGTTCTTaGGCCAGCTCGTTGCCTGCAGGGCCTCTGTCTTCTTCTGATGCT | + |
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Preference number: 6 (lower is better) Translates to: SFDRRCLRFQAFLSS*ASSLPAGPLSSSDA Trigger: AGCATCAGAAGAAGACAGAGGCCCTGCAGGCAACGAGCTGGCCAAAGAACTCAGGAATGCCTGGAATCTCAGACATCGCCTGTCGAAAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000122910.3 |
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| CDS GCA 72 bp | TCCTCTGCAGCTAAATGGTCTGAATGGGGCCCCTCCTaGTCGCTGGAACTCTCTAAATCCTCAACAGTTGAA | + |
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Preference number: 6 (lower is better) Translates to: SSAAKWSEWGPS*SLELSKSSTVE Trigger: TTCAACTGTTGAGGATTTAGAGAGTTCCAGCGAGCAGGAGGGGCCCCATTCAGACCATTTAGCTGCAGAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000122910.3 |
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| CDS GCA 72 bp | AAGGACCCCCTCTTGGATGGTAAGTTCATGATGAACTaGCTCCTCAATTTCCTGAAGCATCTGGGCCTCCCA | + |
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Preference number: 6 (lower is better) Translates to: KDPLLDGKFMMN*LLNFLKHLGLP Trigger: TGGGAGGCCCAGATGCTTCAGGAAATTGAGGAGGCAGTTCATCATGAACTTACCATCCAAGAGGGGGTCCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000122910.3 |
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