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Pregenerated sensors for CCDC201 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000087512

Ensembl transcript IDs: ENSMUST00000122910.3

Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp CATTGTGTGGAATCTGAAGTTCCTGTGCACAGTCCCAGCTGCTGGCCCACTCCTATGCTAAGTGGCCCCTaGGCTTGGCCAGGGAGCTCA +
Preference number: 4 (lower is better)
Translates to: HCVESEVPVHSPSCWPTPMLSGP*AWPGSS
Trigger: TGAGCTCCCTGGCCAAGCCCAGGGGCCACTTAGCAT...AGGAGTGGGCCAGCAGCTGGGACTGTGCACAGGAACTTCAGATTCCACACAATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122910.3
CDS-3UTR TCA 90 bp CATTGTGTGGAATCTGAAGTTCCTGTGCACAGTCCCAGCTGCTGGCCCACTCCTCTGGTTCAAGGAGGCTaGCATGCAGGGTCCTTCCTC +
Preference number: 4 (lower is better)
Translates to: HCVESEVPVHSPSCWPTPLVQGG*HAGSFL
Trigger: GAGGAAGGACCCTGCATGTCAGCCTCCTTGAACCAG...AGGAGTGGGCCAGCAGCTGGGACTGTGCACAGGAACTTCAGATTCCACACAATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122910.3
CDS-3UTR CCA 90 bp TTAGAACATTGTGTGGAATCTGAAGTTCCTGTGCACAGTCCCAGCTGCTGGCCCAGTGGCCCCTGGGCTTaGCCAGGGAGCTCAGTGCTA +
Preference number: 4 (lower is better)
Translates to: LEHCVESEVPVHSPSCWPSGPWA*PGSSVL
Trigger: TAGCACTGAGCTCCCTGGCCAAGCCCAGGGGCCACT...GGGCCAGCAGCTGGGACTGTGCACAGGAACTTCAGATTCCACACAATGTTCTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122910.3
CDS-3UTR TCA 90 bp CATTGTGTGGAATCTGAAGTTCCTGTGCACAGTCCCAGCTGCTGGCCCACTCCTGCCTCCTCAATTTCCTaGAGCATCTGGGCCTCCCAT +
Preference number: 4 (lower is better)
Translates to: HCVESEVPVHSPSCWPTPASSIS*SIWASH
Trigger: ATGGGAGGCCCAGATGCTTCAGGAAATTGAGGAGGC...AGGAGTGGGCCAGCAGCTGGGACTGTGCACAGGAACTTCAGATTCCACACAATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122910.3
CDS-3UTR GCA 90 bp CATTGTGTGGAATCTGAAGTTCCTGTGCACAGTCCCAGCTGCTGGCCCACTCCTTCAAGGAGGCTGACATaGAGGGTCCTTCCTCTGCAG +
Preference number: 4 (lower is better)
Translates to: HCVESEVPVHSPSCWPTPSRRLT*RVLPLQ
Trigger: CTGCAGAGGAAGGACCCTGCATGTCAGCCTCCTTGA...AGGAGTGGGCCAGCAGCTGGGACTGTGCACAGGAACTTCAGATTCCACACAATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122910.3
CDS-3UTR TCA 90 bp CATTGTGTGGAATCTGAAGTTCCTGTGCACAGTCCCAGCTGCTGGCCCACTCCTGCCTCTGTCTTCTTCTaGTGCTGCTCCTGGTTCAAG +
Preference number: 4 (lower is better)
Translates to: HCVESEVPVHSPSCWPTPASVFF*CCSWFK
Trigger: CTTGAACCAGGAGCAGCATCAGAAGAAGACAGAGGC...AGGAGTGGGCCAGCAGCTGGGACTGTGCACAGGAACTTCAGATTCCACACAATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122910.3
CDS-3UTR TCA 90 bp CATTGTGTGGAATCTGAAGTTCCTGTGCACAGTCCCAGCTGCTGGCCCACTCCTGATTCCAGGCATTCCTaGGTTCTTTGGCCAGCTCGT +
Preference number: 4 (lower is better)
Translates to: HCVESEVPVHSPSCWPTPDSRHS*VLWPAR
Trigger: ACGAGCTGGCCAAAGAACTCAGGAATGCCTGGAATC...AGGAGTGGGCCAGCAGCTGGGACTGTGCACAGGAACTTCAGATTCCACACAATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122910.3
CDS-3UTR CCA 90 bp CATTGTGTGGAATCTGAAGTTCCTGTGCACAGTCCCAGCTGCTGGCCCACTCCTAAGGCAGCAGGGGCCTaGGGATCTATCCTAACTGTA +
Preference number: 4 (lower is better)
Translates to: HCVESEVPVHSPSCWPTPKAAGA*GSILTV
Trigger: TACAGTTAGGATAGATCCCCAGGCCCCTGCTGCCTT...AGGAGTGGGCCAGCAGCTGGGACTGTGCACAGGAACTTCAGATTCCACACAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122910.3
CDS-3UTR GCA 90 bp TTAGAACATTGTGTGGAATCTGAAGTTCCTGTGCACAGTCCCAGCTGCTGGCCCGAATGGGGCCCCTCCTaGTCGCTGGAACTCTCTAAA +
Preference number: 4 (lower is better)
Translates to: LEHCVESEVPVHSPSCWPEWGPS*SLELSK
Trigger: TTTAGAGAGTTCCAGCGAGCAGGAGGGGCCCCATTC...GGGCCAGCAGCTGGGACTGTGCACAGGAACTTCAGATTCCACACAATGTTCTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122910.3
CDS-3UTR TCA 90 bp CATTGTGTGGAATCTGAAGTTCCTGTGCACAGTCCCAGCTGCTGGCCCACTCCTTCACTAGAGAGGAGCTaGATTCAGGAATCTCTGTGT +
Preference number: 4 (lower is better)
Translates to: HCVESEVPVHSPSCWPTPSLERS*IQESLC
Trigger: ACACAGAGATTCCTGAATTCAGCTCCTCTCTAGTGA...AGGAGTGGGCCAGCAGCTGGGACTGTGCACAGGAACTTCAGATTCCACACAATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122910.3
CDS-3UTR GCA 90 bp TTAGAACATTGTGTGGAATCTGAAGTTCCTGTGCACAGTCCCAGCTGCTGGCCCAAGTTCATGATGAACTaGCTCCTCAATTTCCTGAAG +
Preference number: 4 (lower is better)
Translates to: LEHCVESEVPVHSPSCWPKFMMN*LLNFLK
Trigger: CTTCAGGAAATTGAGGAGGCAGTTCATCATGAACTT...GGGCCAGCAGCTGGGACTGTGCACAGGAACTTCAGATTCCACACAATGTTCTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122910.3
CDS-3UTR CAA 90 bp CATTGTGTGGAATCTGAAGTTCCTGTGCACAGTCCCAGCTGCTGGCCCACTCCTAAGTGGCCCCTGGGCTaGGCCAGGGAGCTCAGTGCT +
Preference number: 5 (lower is better)
Translates to: HCVESEVPVHSPSCWPTPKWPLG*ARELSA
Trigger: AGCACTGAGCTCCCTGGCCAAGCCCAGGGGCCACTT...AGGAGTGGGCCAGCAGCTGGGACTGTGCACAGGAACTTCAGATTCCACACAATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122910.3
CDS-3UTR CAA 90 bp TTAGAACATTGTGTGGAATCTGAAGTTCCTGTGCACAGTCCCAGCTGCTGGCCCTCTTTGGCCAGCTCGTaGCCTGCAGGGCCTCTGTCT +
Preference number: 5 (lower is better)
Translates to: LEHCVESEVPVHSPSCWPSLASS*PAGPLS
Trigger: AGACAGAGGCCCTGCAGGCAACGAGCTGGCCAAAGA...GGGCCAGCAGCTGGGACTGTGCACAGGAACTTCAGATTCCACACAATGTTCTAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122910.3
CDS GCA 90 bp CTCAGTGCTAAGGACCCCCTCTTGGATGGTAAGTTCATGATGAACTaGCTCCTCAATTTCCTGAAGCATCTGGGCCTCCCATTGCCGCAA +
Preference number: 5 (lower is better)
Translates to: LSAKDPLLDGKFMMN*LLNFLKHLGLPLPQ
Trigger: TTGCGGCAATGGGAGGCCCAGATGCTTCAGGAAATTGAGGAGGCAGTTCATCATGAACTTACCATCCAAGAGGGGGTCCTTAGCACTGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000122910.3
CDS GCA 90 bp CAGGGTCCTTCCTCTGCAGCTAAATGGTCTGAATGGGGCCCCTCCTaGTCGCTGGAACTCTCTAAATCCTCAACAGTTGAAAGCCTTTTT +
Preference number: 5 (lower is better)
Translates to: QGPSSAAKWSEWGPS*SLELSKSSTVESLF
Trigger: AAAAAGGCTTTCAACTGTTGAGGATTTAGAGAGTTCCAGCGAGCAGGAGGGGCCCCATTCAGACCATTTAGCTGCAGAGGAAGGACCCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122910.3
CDS-3UTR CAA 90 bp TTAGAACATTGTGTGGAATCTGAAGTTCCTGTGCACAGTCCCAGCTGCTGGCCCGCTAAGGACCCCCTCTaGGATGGTAAGTTCATGATG +
Preference number: 5 (lower is better)
Translates to: LEHCVESEVPVHSPSCWPAKDPL*DGKFMM
Trigger: CATCATGAACTTACCATCCAAGAGGGGGTCCTTAGC...GGGCCAGCAGCTGGGACTGTGCACAGGAACTTCAGATTCCACACAATGTTCTAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000122910.3
CDS CAA 72 bp TTCCTGAAGCATCTGGGCCTCCCATTGCCGCAAGCGTaGCATCGCAGCTGCCCGCTTCTTTGGGTCTCGTCT +
Preference number: 6 (lower is better)
Translates to: FLKHLGLPLPQA*HRSCPLLWVSS
Trigger: AGACGAGACCCAAAGAAGCGGGCAGCTGCGATGCAACGCTTGCGGCAATGGGAGGCCCAGATGCTTCAGGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122910.3
CDS CCA 72 bp GGATCTATCCTAACTGTACTGATGCTAAGTGGCCCCTaGGCTTGGCCAGGGAGCTCAGTGCTAAGGACCCCC +
Preference number: 6 (lower is better)
Translates to: GSILTVLMLSGP*AWPGSSVLRTP
Trigger: GGGGGTCCTTAGCACTGAGCTCCCTGGCCAAGCCCAGGGGCCACTTAGCATCAGTACAGTTAGGATAGATCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122910.3
CDS CCA 72 bp GGCCTGGGGATCTATCCTAACTGTACTGATGCTAAGTaGCCCCTGGGCTTGGCCAGGGAGCTCAGTGCTAAG +
Preference number: 6 (lower is better)
Translates to: GLGIYPNCTDAK*PLGLARELSAK
Trigger: CTTAGCACTGAGCTCCCTGGCCAAGCCCAGGGGCCACTTAGCATCAGTACAGTTAGGATAGATCCCCAGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122910.3
CDS CAA 72 bp TGCCTCCTCAATTTCCTGAAGCATCTGGGCCTCCCATaGCCGCAAGCGTTGCATCGCAGCTGCCCGCTTCTT +
Preference number: 6 (lower is better)
Translates to: CLLNFLKHLGLP*PQALHRSCPLL
Trigger: AAGAAGCGGGCAGCTGCGATGCAACGCTTGCGGCAATGGGAGGCCCAGATGCTTCAGGAAATTGAGGAGGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122910.3
CDS CAA 90 bp TGGCCCCTGGGCTTGGCCAGGGAGCTCAGTGCTAAGGACCCCCTCTaGGATGGTAAGTTCATGATGAACTGCCTCCTCAATTTCCTGAAG +
Preference number: 6 (lower is better)
Translates to: WPLGLARELSAKDPL*DGKFMMNCLLNFLK
Trigger: CTTCAGGAAATTGAGGAGGCAGTTCATCATGAACTTACCATCCAAGAGGGGGTCCTTAGCACTGAGCTCCCTGGCCAAGCCCAGGGGCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000122910.3
CDS CAA 72 bp GGCTTGGCCAGGGAGCTCAGTGCTAAGGACCCCCTCTaGGATGGTAAGTTCATGATGAACTGCCTCCTCAAT +
Preference number: 6 (lower is better)
Translates to: GLARELSAKDPL*DGKFMMNCLLN
Trigger: ATTGAGGAGGCAGTTCATCATGAACTTACCATCCAAGAGGGGGTCCTTAGCACTGAGCTCCCTGGCCAAGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000122910.3
CDS CAA 90 bp TCTTTCGACAGGCGATGTCTGAGATTCCAGGCATTCCTGAGTTCTTaGGCCAGCTCGTTGCCTGCAGGGCCTCTGTCTTCTTCTGATGCT +
Preference number: 6 (lower is better)
Translates to: SFDRRCLRFQAFLSS*ASSLPAGPLSSSDA
Trigger: AGCATCAGAAGAAGACAGAGGCCCTGCAGGCAACGAGCTGGCCAAAGAACTCAGGAATGCCTGGAATCTCAGACATCGCCTGTCGAAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122910.3
CDS GCA 72 bp TCCTCTGCAGCTAAATGGTCTGAATGGGGCCCCTCCTaGTCGCTGGAACTCTCTAAATCCTCAACAGTTGAA +
Preference number: 6 (lower is better)
Translates to: SSAAKWSEWGPS*SLELSKSSTVE
Trigger: TTCAACTGTTGAGGATTTAGAGAGTTCCAGCGAGCAGGAGGGGCCCCATTCAGACCATTTAGCTGCAGAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122910.3
CDS GCA 72 bp AAGGACCCCCTCTTGGATGGTAAGTTCATGATGAACTaGCTCCTCAATTTCCTGAAGCATCTGGGCCTCCCA +
Preference number: 6 (lower is better)
Translates to: KDPLLDGKFMMN*LLNFLKHLGLP
Trigger: TGGGAGGCCCAGATGCTTCAGGAAATTGAGGAGGCAGTTCATCATGAACTTACCATCCAAGAGGGGGTCCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000122910.3