RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CCDC194 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000108900

Ensembl transcript IDs: ENSMUST00000207913.2

Found 83 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGAGGAGGATGCTGGATCCCCTGGGACCAGAGTTTCCCATGTTTGTaGTGTGGTTGTGAAAGCAACCCCGGGTGTCTGCAAGAACAACAG +
Preference number: 1 (lower is better)
Translates to: RGGCWIPWDQSFPCL*CGCESNPGCLQEQQ
Trigger: CTGTTGTTCTTGCAGACACCCGGGGTTGCTTTCACAACCACATCACAAACATGGGAAACTCTGGTCCCAGGGGATCCAGCATCCTCCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
3UTR TCA 90 bp GTTGTAAGGCTCACAAACTGTGAAATAAAGCAAACACGAGATTGTTaGGGAGGACATGGTGCTGTGTACCTTCAAGGGCAGCCAAGGCTA +
Preference number: 1 (lower is better)
Translates to: VVRLTNCEIKQTRDC*GGHGAVYLQGQPRL
Trigger: TAGCCTTGGCTGCCCTTGAAGGTACACAGCACCATGTCCTCCTCAACAATCTCGTGTTTGCTTTATTTCACAGTTTGTGAGCCTTACAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
3UTR CCA 90 bp TTTGTATATACTCATTTCTTGCATGTATATGCACACTTCTGTATGTaGTACCAAAGTAGCTCAGAGGAGGATGCTGGATCCCCTGGGACC +
Preference number: 1 (lower is better)
Translates to: FVYTHFLHVYAHFCM*YQSSSEEDAGSPGT
Trigger: GGTCCCAGGGGATCCAGCATCCTCCTCTGAGCTACTTTGGTACCACATACAGAAGTGTGCATATACATGCAAGAAATGAGTATATACAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
3UTR TCA 90 bp CTCAGAAAAACCCTGTTAAATATGAGTTGTAAGGCTCACAAACTGTaGAATAAAGCAAACACGAGATTGTTGAGGAGGACATGGTGCTGT +
Preference number: 1 (lower is better)
Translates to: LRKTLLNMSCKAHKL*NKANTRLLRRTWCC
Trigger: ACAGCACCATGTCCTCCTCAACAATCTCGTGTTTGCTTTATTTCACAGTTTGTGAGCCTTACAACTCATATTTAACAGGGTTTTTCTGAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
3UTR-3UTR TCA 90 bp ACCAGAGTTTCCCATGTTTGTGATGTGGTTGTGAAAGCAACCCCGGGTGTCTGCCCTTTCCCCGATGTGTaGCCCAGCCAGGTCCCCTTC +
Preference number: 2 (lower is better)
Translates to: TRVSHVCDVVVKATPGVCPFPDV*PSQVPF
Trigger: GAAGGGGACCTGGCTGGGTCACACATCGGGGAAAGG...GCAGACACCCGGGGTTGCTTTCACAACCACATCACAAACATGGGAAACTCTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
3UTR-3UTR TCA 90 bp ACCAGAGTTTCCCATGTTTGTGATGTGGTTGTGAAAGCAACCCCGGGTGTCTGCGCCTCTAAAACACTCTaGCCATCCTGGCCCGAGGCT +
Preference number: 2 (lower is better)
Translates to: TRVSHVCDVVVKATPGVCASKTL*PSWPEA
Trigger: AGCCTCGGGCCAGGATGGTCAGAGTGTTTTAGAGGC...GCAGACACCCGGGGTTGCTTTCACAACCACATCACAAACATGGGAAACTCTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
3UTR-3UTR GCA 90 bp ACCAGAGTTTCCCATGTTTGTGATGTGGTTGTGAAAGCAACCCCGGGTGTCTGCACCTGGAGTTCTGCGTaGTCCAACTGGGTGAGCCCA +
Preference number: 2 (lower is better)
Translates to: TRVSHVCDVVVKATPGVCTWSSA*SNWVSP
Trigger: TGGGCTCACCCAGTTGGAGCACGCAGAACTCCAGGT...GCAGACACCCGGGGTTGCTTTCACAACCACATCACAAACATGGGAAACTCTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
3UTR-3UTR TCA 90 bp TCCCCCAAGCCTCAGTCCTCATGGGTCAGAGACTGGAGGTGTTTGTGGTACTGGTCTTCATGTAGCCCCTaGTCCTCAAGGCTTCTTAGA +
Preference number: 2 (lower is better)
Translates to: SPKPQSSWVRDWRCLWYWSSCSP*SSRLLR
Trigger: TCTAAGAAGCCTTGAGGATCAGGGGCTACATGAAGA...CCAGTACCACAAACACCTCCAGTCTCTGACCCATGAGGACTGAGGCTTGGGGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
3UTR CAA 90 bp GTTTCCCTATGTGATGATCTAGCACTGGGTGCTCCCGTGGAGAGGTaGGTTGTATCTGTGTGCTGCCACCTAGGCAAGTCTTGGGTGTTA +
Preference number: 2 (lower is better)
Translates to: VSLCDDLALGAPVER*VVSVCCHLGKSWVL
Trigger: TAACACCCAAGACTTGCCTAGGTGGCAGCACACAGATACAACCAACCTCTCCACGGGAGCACCCAGTGCTAGATCATCACATAGGGAAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
3UTR-3UTR GCA 90 bp CCAGAGAGAGCCCTTTCCCCGATGTGTGACCCAGCCAGGTCCCCTTCCTACACTAGGCTTCTTAGAATTTaGAAGCCTCATTTTCGTGTG +
Preference number: 2 (lower is better)
Translates to: PERALSPMCDPARSPSYTRLLRI*KPHFRV
Trigger: CACACGAAAATGAGGCTTGCAAATTCTAAGAAGCCT...AGTGTAGGAAGGGGACCTGGCTGGGTCACACATCGGGGAAAGGGCTCTCTCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
3UTR-3UTR TCA 90 bp TCCCCCAAGCCTCAGTCCTCATGGGTCAGAGACTGGAGGTGTTTGTGGTACTGGGCCCAGCATCAACTATaGGATAAATGTTGTGTCTTG +
Preference number: 2 (lower is better)
Translates to: SPKPQSSWVRDWRCLWYWAQHQL*DKCCVL
Trigger: CAAGACACAACATTTATCTCATAGTTGATGCTGGGC...CCAGTACCACAAACACCTCCAGTCTCTGACCCATGAGGACTGAGGCTTGGGGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
3UTR-3UTR GCA 90 bp ACCAGAGTTTCCCATGTTTGTGATGTGGTTGTGAAAGCAACCCCGGGTGTCTGCTTGAGGAGGACATGGTaGTGTGTACCTTCAAGGGCA +
Preference number: 2 (lower is better)
Translates to: TRVSHVCDVVVKATPGVCLRRTW*CVPSRA
Trigger: TGCCCTTGAAGGTACACAGCACCATGTCCTCCTCAA...GCAGACACCCGGGGTTGCTTTCACAACCACATCACAAACATGGGAAACTCTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
3UTR CAA 90 bp TTCTTAGAATTTGCAAGCCTCATTTTCGTGTGCCTCTGTTCTCTGTaGAAATCCCACCTGGAGTTCTGCGTGCTCCAACTGGGTGAGCCC +
Preference number: 2 (lower is better)
Translates to: FLEFASLIFVCLCSL*KSHLEFCVLQLGEP
Trigger: GGGCTCACCCAGTTGGAGCACGCAGAACTCCAGGTGGGATTTCAACAGAGAACAGAGGCACACGAAAATGAGGCTTGCAAATTCTAAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
3UTR CAA 90 bp GAGAGAAAGGAGGAGAGTAGACGGGAGGGTGAGGTATTGTTTGACTaGTCAATGATTCTTTTGAGTCCCAGAGAGAGCCCTTTCCCCGAT +
Preference number: 2 (lower is better)
Translates to: ERKEESRREGEVLFD*SMILLSPRESPFPD
Trigger: ATCGGGGAAAGGGCTCTCTCTGGGACTCAAAAGAATCATTGACAAGTCAAACAATACCTCACCCTCCCGTCTACTCTCCTCCTTTCTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
3UTR-3UTR CCA 90 bp GATGCTGGATCCCCTGGGACCAGAGTTTCCCATGTTTGTGATGTGGTTGTGAAATTGTTGAGGAGGACATaGTGCTGTGTACCTTCAAGG +
Preference number: 2 (lower is better)
Translates to: DAGSPGTRVSHVCDVVVKLLRRT*CCVPSR
Trigger: CCTTGAAGGTACACAGCACCATGTCCTCCTCAACAA...TTTCACAACCACATCACAAACATGGGAAACTCTGGTCCCAGGGGATCCAGCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
3UTR-3UTR TCA 90 bp TGCATGTATATGCACACTTCTGTATGTGGTACCAAAGTAGCTCAGAGGAGGATGCAGGGCCTGAGTAAATaGGCCTCAGTTTCCCTATGT +
Preference number: 2 (lower is better)
Translates to: CMYMHTSVCGTKVAQRRMQGLSK*ASVSLC
Trigger: ACATAGGGAAACTGAGGCTCATTTACTCAGGCCCTG...CATCCTCCTCTGAGCTACTTTGGTACCACATACAGAAGTGTGCATATACATGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
3UTR-3UTR CAA 90 bp CCAGAGAGAGCCCTTTCCCCGATGTGTGACCCAGCCAGGTCCCCTTCCTACACTTGCCTCTGTTCTCTGTaGAAATCCCACCTGGAGTTC +
Preference number: 3 (lower is better)
Translates to: PERALSPMCDPARSPSYTCLCSL*KSHLEF
Trigger: GAACTCCAGGTGGGATTTCAACAGAGAACAGAGGCA...AGTGTAGGAAGGGGACCTGGCTGGGTCACACATCGGGGAAAGGGCTCTCTCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
3UTR TCA 72 bp TGCTGGATCCCCTGGGACCAGAGTTTCCCATGTTTGTaGTGTGGTTGTGAAAGCAACCCCGGGTGTCTGCAA +
Preference number: 3 (lower is better)
Translates to: CWIPWDQSFPCL*CGCESNPGCLQ
Trigger: TTGCAGACACCCGGGGTTGCTTTCACAACCACATCACAAACATGGGAAACTCTGGTCCCAGGGGATCCAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
3UTR TCA 72 bp CTGGGACCAGAGTTTCCCATGTTTGTGATGTGGTTGTaGAAGCAACCCCGGGTGTCTGCAAGAACAACAGGT +
Preference number: 3 (lower is better)
Translates to: LGPEFPMFVMWL*KQPRVSARTTG
Trigger: ACCTGTTGTTCTTGCAGACACCCGGGGTTGCTTTCACAACCACATCACAAACATGGGAAACTCTGGTCCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
3UTR-3UTR CAA 90 bp ATGCACACTTCTGTATGTGGTACCAAAGTAGCTCAGAGGAGGATGCTGGATCCCCCACCTAGGCAAGTCTaGGGTGTTAAGTTGATCGTG +
Preference number: 3 (lower is better)
Translates to: MHTSVCGTKVAQRRMLDPPPRQV*GVKLIV
Trigger: CACGATCAACTTAACACCCAAGACTTGCCTAGGTGG...GGGATCCAGCATCCTCCTCTGAGCTACTTTGGTACCACATACAGAAGTGTGCAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
3UTR-3UTR CAA 90 bp TTGTTTGACTTGTCAATGATTCTTTTGAGTCCCAGAGAGAGCCCTTTCCCCGATGCTCCCGTGGAGAGGTaGGTTGTATCTGTGTGCTGC +
Preference number: 3 (lower is better)
Translates to: LFDLSMILLSPRESPFPDAPVER*VVSVCC
Trigger: GCAGCACACAGATACAACCAACCTCTCCACGGGAGC...ATCGGGGAAAGGGCTCTCTCTGGGACTCAAAAGAATCATTGACAAGTCAAACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
3UTR GCA 72 bp TGGGTCAGAGACTGGAGGTGTTTGTGGTACTGGTCCTaGCTGCTATGTGCTGTCTCAGAAACAAATGAAGAG +
Preference number: 3 (lower is better)
Translates to: WVRDWRCLWYWS*LLCAVSETNEE
Trigger: CTCTTCATTTGTTTCTGAGACAGCACATAGCAGGCAGGACCAGTACCACAAACACCTCCAGTCTCTGACCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
3UTR CCA 72 bp TCCTCATGGGTCAGAGACTGGAGGTGTTTGTGGTACTaGTCCTGCCTGCTATGTGCTGTCTCAGAAACAAAT +
Preference number: 3 (lower is better)
Translates to: SSWVRDWRCLWY*SCLLCAVSETN
Trigger: ATTTGTTTCTGAGACAGCACATAGCAGGCAGGACCAGTACCACAAACACCTCCAGTCTCTGACCCATGAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
3UTR-3UTR CAA 90 bp ATGCACACTTCTGTATGTGGTACCAAAGTAGCTCAGAGGAGGATGCTGGATCCCGTCTTGGGTGTTAAGTaGATCGTGGATGTTGTGAGC +
Preference number: 3 (lower is better)
Translates to: MHTSVCGTKVAQRRMLDPVLGVK*IVDVVS
Trigger: GCTCACAACATCCACGATCAACTTAACACCCAAGAC...GGGATCCAGCATCCTCCTCTGAGCTACTTTGGTACCACATACAGAAGTGTGCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
3UTR GCA 72 bp AATAAAGCAAACACGAGATTGTTGAGGAGGACATGGTaGTGTGTACCTTCAAGGGCAGCCAAGGCTAAGCTA +
Preference number: 3 (lower is better)
Translates to: NKANTRLLRRTW*CVPSRAAKAKL
Trigger: TAGCTTAGCCTTGGCTGCCCTTGAAGGTACACAGCACCATGTCCTCCTCAACAATCTCGTGTTTGCTTTATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
3UTR TCA 72 bp CTCACAAACTGTGAAATAAAGCAAACACGAGATTGTTaGGGAGGACATGGTGCTGTGTACCTTCAAGGGCAG +
Preference number: 3 (lower is better)
Translates to: LTNCEIKQTRDC*GGHGAVYLQGQ
Trigger: CTGCCCTTGAAGGTACACAGCACCATGTCCTCCTCAACAATCTCGTGTTTGCTTTATTTCACAGTTTGTGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
3UTR GCA 72 bp TCAGAGACTGGAGGTGTTTGTGGTACTGGTCCTGCCTaGTATGTGCTGTCTCAGAAACAAATGAAGAGTAAA +
Preference number: 3 (lower is better)
Translates to: SETGGVCGTGPA*YVLSQKQMKSK
Trigger: TTTACTCTTCATTTGTTTCTGAGACAGCACATAGCAGGCAGGACCAGTACCACAAACACCTCCAGTCTCTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
3UTR TCA 72 bp AAATGTTGTGTCTTGATTACCAGGGACATCAGGGCCTaGGTAAATGAGCCTCAGTTTCCCTATGTGATGATC +
Preference number: 3 (lower is better)
Translates to: KCCVLITRDIRA*VNEPQFPYVMI
Trigger: GATCATCACATAGGGAAACTGAGGCTCATTTACTCAGGCCCTGATGTCCCTGGTAATCAAGACACAACATTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
3UTR CCA 72 bp ACTCATTTCTTGCATGTATATGCACACTTCTGTATGTaGTACCAAAGTAGCTCAGAGGAGGATGCTGGATCC +
Preference number: 3 (lower is better)
Translates to: THFLHVYAHFCM*YQSSSEEDAGS
Trigger: GGATCCAGCATCCTCCTCTGAGCTACTTTGGTACCACATACAGAAGTGTGCATATACATGCAAGAAATGAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
3UTR TCA 72 bp ACCCTGTTAAATATGAGTTGTAAGGCTCACAAACTGTaGAATAAAGCAAACACGAGATTGTTGAGGAGGACA +
Preference number: 3 (lower is better)
Translates to: TLLNMSCKAHKL*NKANTRLLRRT
Trigger: TGTCCTCCTCAACAATCTCGTGTTTGCTTTATTTCACAGTTTGTGAGCCTTACAACTCATATTTAACAGGGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS-3UTR GCA 90 bp CCAGAGAGAGCCCTTTCCCCGATGTGTGACCCAGCCAGGTCCCCTTCCTACACTCCTCTTGTCGCCCTCTaGGCGCTGCAGCTGCCAGAC +
Preference number: 4 (lower is better)
Translates to: PERALSPMCDPARSPSYTPLVAL*ALQLPD
Trigger: GTCTGGCAGCTGCAGCGCGCAGAGGGCGACAAGAGG...AGTGTAGGAAGGGGACCTGGCTGGGTCACACATCGGGGAAAGGGCTCTCTCTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS-3UTR GCA 90 bp CCAGAGAGAGCCCTTTCCCCGATGTGTGACCCAGCCAGGTCCCCTTCCTACACTACTCTTTCCGCAGGGTaGCAAGCTCAGCTTCCAGAG +
Preference number: 4 (lower is better)
Translates to: PERALSPMCDPARSPSYTTLSAG*QAQLPE
Trigger: CTCTGGAAGCTGAGCTTGGCACCCTGCGGAAAGAGT...AGTGTAGGAAGGGGACCTGGCTGGGTCACACATCGGGGAAAGGGCTCTCTCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS-3UTR GCA 90 bp TATGCACACTTCTGTATGTGGTACCAAAGTAGCTCAGAGGAGGATGCTGGATCCCTCGCCGGCTGCCTCTaGTGCGCCTGCGCGTTGCAG +
Preference number: 4 (lower is better)
Translates to: YAHFCMWYQSSSEEDAGSLAGCL*CACALQ
Trigger: CTGCAACGCGCAGGCGCAGCAGAGGCAGCCGGCGAG...GGATCCAGCATCCTCCTCTGAGCTACTTTGGTACCACATACAGAAGTGTGCATA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS-3UTR CCA 90 bp TCAGAGACTGGAGGTGTTTGTGGTACTGGTCCTGCCTGCTATGTGCTGTCTCAGCAGACCAGGTTCTCCTaGGCTTGCTCAGCTTCGGCC +
Preference number: 4 (lower is better)
Translates to: SETGGVCGTGPACYVLSQQTRFS*ACSASA
Trigger: GGCCGAAGCTGAGCAAGCCCAGGAGAACCTGGTCTG...CTGAGACAGCACATAGCAGGCAGGACCAGTACCACAAACACCTCCAGTCTCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS-3UTR CCA 90 bp TCAGAGACTGGAGGTGTTTGTGGTACTGGTCCTGCCTGCTATGTGCTGTCTCAGGTTGCTTGGACTCAGTaGCTGTCGCCTCCCAGCGCA +
Preference number: 4 (lower is better)
Translates to: SETGGVCGTGPACYVLSQVAWTQ*LSPPSA
Trigger: TGCGCTGGGAGGCGACAGCCACTGAGTCCAAGCAAC...CTGAGACAGCACATAGCAGGCAGGACCAGTACCACAAACACCTCCAGTCTCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS-3UTR TCA 90 bp ATGCACACTTCTGTATGTGGTACCAAAGTAGCTCAGAGGAGGATGCTGGATCCCTGTCTTTGCAGGCCTTaGGCGCAGCCTCCAACTCCC +
Preference number: 4 (lower is better)
Translates to: MHTSVCGTKVAQRRMLDPCLCRP*AQPPTP
Trigger: GGGAGTTGGAGGCTGCGCTCAAGGCCTGCAAAGACA...GGGATCCAGCATCCTCCTCTGAGCTACTTTGGTACCACATACAGAAGTGTGCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS-3UTR GCA 90 bp TATGCACACTTCTGTATGTGGTACCAAAGTAGCTCAGAGGAGGATGCTGGATCCTCTGCGCGCTGCAGCTaGCAGACCAGGTTCTCCTGG +
Preference number: 4 (lower is better)
Translates to: YAHFCMWYQSSSEEDAGSSARCS*QTRFSW
Trigger: CCAGGAGAACCTGGTCTGGCAGCTGCAGCGCGCAGA...GGATCCAGCATCCTCCTCTGAGCTACTTTGGTACCACATACAGAAGTGTGCATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS-3UTR CCA 90 bp TCCCCCAAGCCTCAGTCCTCATGGGTCAGAGACTGGAGGTGTTTGTGGTACTGGCCTCTGACTTTGGCCTaGTCCATCTCAATCTTCAGG +
Preference number: 4 (lower is better)
Translates to: SPKPQSSWVRDWRCLWYWPLTLA*SISIFR
Trigger: CCTGAAGATTGAGATGGACCAGGCCAAAGTCAGAGG...CCAGTACCACAAACACCTCCAGTCTCTGACCCATGAGGACTGAGGCTTGGGGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
3UTR CAA 72 bp TGTGATGATCTAGCACTGGGTGCTCCCGTGGAGAGGTaGGTTGTATCTGTGTGCTGCCACCTAGGCAAGTCT +
Preference number: 4 (lower is better)
Translates to: CDDLALGAPVER*VVSVCCHLGKS
Trigger: AGACTTGCCTAGGTGGCAGCACACAGATACAACCAACCTCTCCACGGGAGCACCCAGTGCTAGATCATCACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
3UTR CAA 72 bp AAGCCTCAGTCCTCATGGGTCAGAGACTGGAGGTGTTaGTGGTACTGGTCCTGCCTGCTATGTGCTGTCTCA +
Preference number: 4 (lower is better)
Translates to: KPQSSWVRDWRC*WYWSCLLCAVS
Trigger: TGAGACAGCACATAGCAGGCAGGACCAGTACCACAAACACCTCCAGTCTCTGACCCATGAGGACTGAGGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS-3UTR GCA 90 bp TATGCACACTTCTGTATGTGGTACCAAAGTAGCTCAGAGGAGGATGCTGGATCCGCCTGCGCGTTGCAGTaGCTCTTCCAGCTGTTGCTT +
Preference number: 4 (lower is better)
Translates to: YAHFCMWYQSSSEEDAGSACALQ*LFQLLL
Trigger: AAGCAACAGCTGGAAGAGGCACTGCAACGCGCAGGC...GGATCCAGCATCCTCCTCTGAGCTACTTTGGTACCACATACAGAAGTGTGCATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS-3UTR CCA 90 bp TTGTTTGACTTGTCAATGATTCTTTTGAGTCCCAGAGAGAGCCCTTTCCCCGATCTGGGGGCCGCACCGTaGCATTCATCTGCTCAGGTT +
Preference number: 4 (lower is better)
Translates to: LFDLSMILLSPRESPFPDLGAAP*HSSAQV
Trigger: AACCTGAGCAGATGAATGCCACGGTGCGGCCCCCAG...ATCGGGGAAAGGGCTCTCTCTGGGACTCAAAAGAATCATTGACAAGTCAAACAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
3UTR CAA 72 bp GTTGGTTGTATCTGTGTGCTGCCACCTAGGCAAGTCTaGGGTGTTAAGTTGATCGTGGATGTTGTGAGCCAC +
Preference number: 4 (lower is better)
Translates to: VGCICVLPPRQV*GVKLIVDVVSH
Trigger: GTGGCTCACAACATCCACGATCAACTTAACACCCAAGACTTGCCTAGGTGGCAGCACACAGATACAACCAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
3UTR CAA 72 bp TTTGCAAGCCTCATTTTCGTGTGCCTCTGTTCTCTGTaGAAATCCCACCTGGAGTTCTGCGTGCTCCAACTG +
Preference number: 4 (lower is better)
Translates to: FASLIFVCLCSL*KSHLEFCVLQL
Trigger: CAGTTGGAGCACGCAGAACTCCAGGTGGGATTTCAACAGAGAACAGAGGCACACGAAAATGAGGCTTGCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS-3UTR CCA 90 bp TGCATGTATATGCACACTTCTGTATGTGGTACCAAAGTAGCTCAGAGGAGGATGAGTGGATCCAGACTTTaGGCGGTGGCTGATGCTAGG +
Preference number: 4 (lower is better)
Translates to: CMYMHTSVCGTKVAQRRMSGSRL*AVADAR
Trigger: CCTAGCATCAGCCACCGCCCAAAGTCTGGATCCACT...CATCCTCCTCTGAGCTACTTTGGTACCACATACAGAAGTGTGCATATACATGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS CCA 90 bp TGCCGAGTCTGGGGGCCGCACCGTGGCATTCATCTGCTCAGGTTCTaGACAACGGGGGCTCCGGGCCGTCGAGGCCGCCAGATTCCAGGC +
Preference number: 5 (lower is better)
Translates to: CRVWGPHRGIHLLRF*TTGAPGRRGRQIPG
Trigger: GCCTGGAATCTGGCGGCCTCGACGGCCCGGAGCCCCCGTTGTCCAGAACCTGAGCAGATGAATGCCACGGTGCGGCCCCCAGACTCGGCA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS CCA 90 bp GCCGCAGTTCTTCGACCTCGGGTGCCGAGTCTGGGGGCCGCACCGTaGCATTCATCTGCTCAGGTTCTGGACAACGGGGGCTCCGGGCCG +
Preference number: 5 (lower is better)
Translates to: AAVLRPRVPSLGAAP*HSSAQVLDNGGSGP
Trigger: CGGCCCGGAGCCCCCGTTGTCCAGAACCTGAGCAGATGAATGCCACGGTGCGGCCCCCAGACTCGGCACCCGAGGTCGAAGAACTGCGGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS GCA 90 bp TCGCCCTCTGCGCGCTGCAGCTGCCAGACCAGGTTCTCCTGGGCTTaGTCAGCTTCGGCCAGCCGTCGCCGCAGTTCTTCGACCTCGGGT +
Preference number: 5 (lower is better)
Translates to: SPSARCSCQTRFSWA*SASASRRRSSSTSG
Trigger: ACCCGAGGTCGAAGAACTGCGGCGACGGCTGGCCGAAGCTGAGCAAGCCCAGGAGAACCTGGTCTGGCAGCTGCAGCGCGCAGAGGGCGA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS GCA 90 bp AGCGCAGCCTCCAACTCCCTCTTGTCGCCCTCTGCGCGCTGCAGCTaGCAGACCAGGTTCTCCTGGGCTTGCTCAGCTTCGGCCAGCCGT +
Preference number: 5 (lower is better)
Translates to: SAASNSLLSPSARCS*QTRFSWACSASASR
Trigger: ACGGCTGGCCGAAGCTGAGCAAGCCCAGGAGAACCTGGTCTGGCAGCTGCAGCGCGCAGAGGGCGACAAGAGGGAGTTGGAGGCTGCGCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS GCA 90 bp GCCTTGAGCGCAGCCTCCAACTCCCTCTTGTCGCCCTCTGCGCGCTaGAGCTGCCAGACCAGGTTCTCCTGGGCTTGCTCAGCTTCGGCC +
Preference number: 5 (lower is better)
Translates to: ALSAASNSLLSPSAR*SCQTRFSWACSASA
Trigger: GGCCGAAGCTGAGCAAGCCCAGGAGAACCTGGTCTGGCAGCTGCAGCGCGCAGAGGGCGACAAGAGGGAGTTGGAGGCTGCGCTCAAGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS GCA 90 bp CAGCGCCACCTCGCGGCTAACACAAGCCTCGCCGGCTGCCTCTGCTaGGCCTGCGCGTTGCAGTGCCTCTTCCAGCTGTTGCTTGGACTC +
Preference number: 5 (lower is better)
Translates to: QRHLAANTSLAGCLC*ACALQCLFQLLLGL
Trigger: GAGTCCAAGCAACAGCTGGAAGAGGCACTGCAACGCGCAGGCGCAGCAGAGGCAGCCGGCGAGGCTTGTGTTAGCCGCGAGGTGGCGCTG
67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS CCA 90 bp CTCTTGTCGCCCTCTGCGCGCTGCAGCTGCCAGACCAGGTTCTCCTaGGCTTGCTCAGCTTCGGCCAGCCGTCGCCGCAGTTCTTCGACC +
Preference number: 5 (lower is better)
Translates to: LLSPSARCSCQTRFS*ACSASASRRRSSST
Trigger: GGTCGAAGAACTGCGGCGACGGCTGGCCGAAGCTGAGCAAGCCCAGGAGAACCTGGTCTGGCAGCTGCAGCGCGCAGAGGGCGACAAGAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS GCA 90 bp TTTGCAGGCCTTGAGCGCAGCCTCCAACTCCCTCTTGTCGCCCTCTaGGCGCTGCAGCTGCCAGACCAGGTTCTCCTGGGCTTGCTCAGC +
Preference number: 5 (lower is better)
Translates to: FAGLERSLQLPLVAL*ALQLPDQVLLGLLS
Trigger: GCTGAGCAAGCCCAGGAGAACCTGGTCTGGCAGCTGCAGCGCGCAGAGGGCGACAAGAGGGAGTTGGAGGCTGCGCTCAAGGCCTGCAAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS GCA 90 bp GCTGCCTCTGCTGCGCCTGCGCGTTGCAGTGCCTCTTCCAGCTGTTaGTTGGACTCAGTGGCTGTCGCCTCCCAGCGCACCAAGGCTTCT +
Preference number: 5 (lower is better)
Translates to: AASAAPARCSASSSC*LDSVAVASQRTKAS
Trigger: AGAAGCCTTGGTGCGCTGGGAGGCGACAGCCACTGAGTCCAAGCAACAGCTGGAAGAGGCACTGCAACGCGCAGGCGCAGCAGAGGCAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS GCA 90 bp AACACAAGCCTCGCCGGCTGCCTCTGCTGCGCCTGCGCGTTGCAGTaGCTCTTCCAGCTGTTGCTTGGACTCAGTGGCTGTCGCCTCCCA +
Preference number: 5 (lower is better)
Translates to: NTSLAGCLCCACALQ*LFQLLLGLSGCRLP
Trigger: TGGGAGGCGACAGCCACTGAGTCCAAGCAACAGCTGGAAGAGGCACTGCAACGCGCAGGCGCAGCAGAGGCAGCCGGCGAGGCTTGTGTT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS CCA 90 bp CCTCTGCTGCGCCTGCGCGTTGCAGTGCCTCTTCCAGCTGTTGCTTaGACTCAGTGGCTGTCGCCTCCCAGCGCACCAAGGCTTCTGTCA +
Preference number: 5 (lower is better)
Translates to: PLLRLRVAVPLPAVA*TQWLSPPSAPRLLS
Trigger: TGACAGAAGCCTTGGTGCGCTGGGAGGCGACAGCCACTGAGTCCAAGCAACAGCTGGAAGAGGCACTGCAACGCGCAGGCGCAGCAGAGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS TCA 90 bp CCTTTAGTTGGGTCTGAAGCCGACTCTGGCTGTCTTTGCAGGCCTTaGGCGCAGCCTCCAACTCCCTCTTGTCGCCCTCTGCGCGCTGCA +
Preference number: 5 (lower is better)
Translates to: PLVGSEADSGCLCRP*AQPPTPSCRPLRAA
Trigger: TGCAGCGCGCAGAGGGCGACAAGAGGGAGTTGGAGGCTGCGCTCAAGGCCTGCAAAGACAGCCAGAGTCGGCTTCAGACCCAACTAAAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS CCA 90 bp CGCCTGCGCGTTGCAGTGCCTCTTCCAGCTGTTGCTTGGACTCAGTaGCTGTCGCCTCCCAGCGCACCAAGGCTTCTGTCAGCATTCCAT +
Preference number: 5 (lower is better)
Translates to: RLRVAVPLPAVAWTQ*LSPPSAPRLLSAFH
Trigger: ATGGAATGCTGACAGAAGCCTTGGTGCGCTGGGAGGCGACAGCCACTGAGTCCAAGCAACAGCTGGAAGAGGCACTGCAACGCGCAGGCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS-3UTR CAA 90 bp ACTGGGTGCTCCCGTGGAGAGGTTGGTTGTATCTGTGTGCTGCCACCTAGGCAACAGGTTCTCCTGGGCTaGCTCAGCTTCGGCCAGCCG +
Preference number: 5 (lower is better)
Translates to: TGCSRGEVGCICVLPPRQQVLLG*LSFGQP
Trigger: CGGCTGGCCGAAGCTGAGCAAGCCCAGGAGAACCTG...TTGCCTAGGTGGCAGCACACAGATACAACCAACCTCTCCACGGGAGCACCCAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS-3UTR CAA 90 bp CCAGAGAGAGCCCTTTCCCCGATGTGTGACCCAGCCAGGTCCCCTTCCTACACTTGCCTCTTCCAGCTGTaGCTTGGACTCAGTGGCTGT +
Preference number: 5 (lower is better)
Translates to: PERALSPMCDPARSPSYTCLFQL*LGLSGC
Trigger: ACAGCCACTGAGTCCAAGCAACAGCTGGAAGAGGCA...AGTGTAGGAAGGGGACCTGGCTGGGTCACACATCGGGGAAAGGGCTCTCTCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS TCA 90 bp ACTTTGGCCTGGTCCATCTCAATCTTCAGGGCCTTTAGTTGGGTCTaGAGCCGACTCTGGCTGTCTTTGCAGGCCTTGAGCGCAGCCTCC +
Preference number: 5 (lower is better)
Translates to: TLAWSISIFRAFSWV*SRLWLSLQALSAAS
Trigger: GGAGGCTGCGCTCAAGGCCTGCAAAGACAGCCAGAGTCGGCTTCAGACCCAACTAAAGGCCCTGAAGATTGAGATGGACCAGGCCAAAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS-3UTR CAA 90 bp TCCCCCAAGCCTCAGTCCTCATGGGTCAGAGACTGGAGGTGTTTGTGGTACTGGTGCGTGCCTCTGACTTaGGCCTGGTCCATCTCAATC +
Preference number: 5 (lower is better)
Translates to: SPKPQSSWVRDWRCLWYWCVPLT*AWSISI
Trigger: GATTGAGATGGACCAGGCCAAAGTCAGAGGCACGCA...CCAGTACCACAAACACCTCCAGTCTCTGACCCATGAGGACTGAGGCTTGGGGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS TCA 90 bp AGGCTTCTGTCAGCATTCCATTCTCCAGCCCCATCTGCGTGCCTCTaGCTTTGGCCTGGTCCATCTCAATCTTCAGGGCCTTTAGTTGGG +
Preference number: 5 (lower is better)
Translates to: RLLSAFHSPAPSACL*LWPGPSQSSGPLVG
Trigger: CCCAACTAAAGGCCCTGAAGATTGAGATGGACCAGGCCAAAGTCAGAGGCACGCAGATGGGGCTGGAGAATGGAATGCTGACAGAAGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS-3UTR CAA 90 bp GATGCTGGATCCCCTGGGACCAGAGTTTCCCATGTTTGTGATGTGGTTGTGAAACTGTCTTTGCAGGCCTaGAGCGCAGCCTCCAACTCC +
Preference number: 5 (lower is better)
Translates to: DAGSPGTRVSHVCDVVVKLSLQA*SAASNS
Trigger: GGAGTTGGAGGCTGCGCTCAAGGCCTGCAAAGACAG...TTTCACAACCACATCACAAACATGGGAAACTCTGGTCCCAGGGGATCCAGCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS-3UTR CAA 90 bp TTGTTTGACTTGTCAATGATTCTTTTGAGTCCCAGAGAGAGCCCTTTCCCCGATTCTTCCAGCTGTTGCTaGGACTCAGTGGCTGTCGCC +
Preference number: 5 (lower is better)
Translates to: LFDLSMILLSPRESPFPDSSSCC*DSVAVA
Trigger: GGCGACAGCCACTGAGTCCAAGCAACAGCTGGAAGA...ATCGGGGAAAGGGCTCTCTCTGGGACTCAAAAGAATCATTGACAAGTCAAACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS CCA 72 bp CCCTCTGCGCGCTGCAGCTGCCAGACCAGGTTCTCCTaGGCTTGCTCAGCTTCGGCCAGCCGTCGCCGCAGT +
Preference number: 6 (lower is better)
Translates to: PSARCSCQTRFS*ACSASASRRRS
Trigger: ACTGCGGCGACGGCTGGCCGAAGCTGAGCAAGCCCAGGAGAACCTGGTCTGGCAGCTGCAGCGCGCAGAGGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS GCA 72 bp GCGCGCTGCAGCTGCCAGACCAGGTTCTCCTGGGCTTaGTCAGCTTCGGCCAGCCGTCGCCGCAGTTCTTCG +
Preference number: 6 (lower is better)
Translates to: ARCSCQTRFSWA*SASASRRRSSS
Trigger: CGAAGAACTGCGGCGACGGCTGGCCGAAGCTGAGCAAGCCCAGGAGAACCTGGTCTGGCAGCTGCAGCGCGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS GCA 72 bp CTCGCGGCTAACACAAGCCTCGCCGGCTGCCTCTGCTaGGCCTGCGCGTTGCAGTGCCTCTTCCAGCTGTTG +
Preference number: 6 (lower is better)
Translates to: LAANTSLAGCLC*ACALQCLFQLL
Trigger: CAACAGCTGGAAGAGGCACTGCAACGCGCAGGCGCAGCAGAGGCAGCCGGCGAGGCTTGTGTTAGCCGCGAG
67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS CCA 72 bp CTTCGACCTCGGGTGCCGAGTCTGGGGGCCGCACCGTaGCATTCATCTGCTCAGGTTCTGGACAACGGGGGC +
Preference number: 6 (lower is better)
Translates to: LRPRVPSLGAAP*HSSAQVLDNGG
Trigger: GCCCCCGTTGTCCAGAACCTGAGCAGATGAATGCCACGGTGCGGCCCCCAGACTCGGCACCCGAGGTCGAAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS CAA 72 bp TGCGCGCTGCAGCTGCCAGACCAGGTTCTCCTGGGCTaGCTCAGCTTCGGCCAGCCGTCGCCGCAGTTCTTC +
Preference number: 6 (lower is better)
Translates to: CALQLPDQVLLG*LSFGQPSPQFF
Trigger: GAAGAACTGCGGCGACGGCTGGCCGAAGCTGAGCAAGCCCAGGAGAACCTGGTCTGGCAGCTGCAGCGCGCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS GCA 72 bp GCAGCCTCCAACTCCCTCTTGTCGCCCTCTGCGCGCTaGAGCTGCCAGACCAGGTTCTCCTGGGCTTGCTCA +
Preference number: 6 (lower is better)
Translates to: AASNSLLSPSAR*SCQTRFSWACS
Trigger: TGAGCAAGCCCAGGAGAACCTGGTCTGGCAGCTGCAGCGCGCAGAGGGCGACAAGAGGGAGTTGGAGGCTGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS GCA 72 bp CAAGCCTCGCCGGCTGCCTCTGCTGCGCCTGCGCGTTaGAGTGCCTCTTCCAGCTGTTGCTTGGACTCAGTG +
Preference number: 6 (lower is better)
Translates to: QASPAASAAPAR*SASSSCCLDSV
Trigger: CACTGAGTCCAAGCAACAGCTGGAAGAGGCACTGCAACGCGCAGGCGCAGCAGAGGCAGCCGGCGAGGCTTG
65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS CCA 72 bp CGCCTGCGCGTTGCAGTGCCTCTTCCAGCTGTTGCTTaGACTCAGTGGCTGTCGCCTCCCAGCGCACCAAGG +
Preference number: 6 (lower is better)
Translates to: RLRVAVPLPAVA*TQWLSPPSAPR
Trigger: CCTTGGTGCGCTGGGAGGCGACAGCCACTGAGTCCAAGCAACAGCTGGAAGAGGCACTGCAACGCGCAGGCG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS CAA 72 bp TCTTTGCAGGCCTTGAGCGCAGCCTCCAACTCCCTCTaGTCGCCCTCTGCGCGCTGCAGCTGCCAGACCAGG +
Preference number: 6 (lower is better)
Translates to: SLQALSAASNSL*SPSARCSCQTR
Trigger: CCTGGTCTGGCAGCTGCAGCGCGCAGAGGGCGACAAGAGGGAGTTGGAGGCTGCGCTCAAGGCCTGCAAAGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS CAA 72 bp GCGCCTGCGCGTTGCAGTGCCTCTTCCAGCTGTTGCTaGGACTCAGTGGCTGTCGCCTCCCAGCGCACCAAG +
Preference number: 6 (lower is better)
Translates to: APARCSASSSCC*DSVAVASQRTK
Trigger: CTTGGTGCGCTGGGAGGCGACAGCCACTGAGTCCAAGCAACAGCTGGAAGAGGCACTGCAACGCGCAGGCGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS CAA 90 bp GCCTCTGCTGCGCCTGCGCGTTGCAGTGCCTCTTCCAGCTGTTGCTaGGACTCAGTGGCTGTCGCCTCCCAGCGCACCAAGGCTTCTGTC +
Preference number: 6 (lower is better)
Translates to: ASAAPARCSASSSCC*DSVAVASQRTKASV
Trigger: GACAGAAGCCTTGGTGCGCTGGGAGGCGACAGCCACTGAGTCCAAGCAACAGCTGGAAGAGGCACTGCAACGCGCAGGCGCAGCAGAGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS GCA 72 bp TCCAACTCCCTCTTGTCGCCCTCTGCGCGCTGCAGCTaGCAGACCAGGTTCTCCTGGGCTTGCTCAGCTTCG +
Preference number: 6 (lower is better)
Translates to: SNSLLSPSARCS*QTRFSWACSAS
Trigger: CGAAGCTGAGCAAGCCCAGGAGAACCTGGTCTGGCAGCTGCAGCGCGCAGAGGGCGACAAGAGGGAGTTGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS GCA 72 bp GCTAACACAAGCCTCGCCGGCTGCCTCTGCTGCGCCTaGGCGTTGCAGTGCCTCTTCCAGCTGTTGCTTGGA +
Preference number: 6 (lower is better)
Translates to: ANTSLAGCLCCA*ALQCLFQLLLG
Trigger: TCCAAGCAACAGCTGGAAGAGGCACTGCAACGCGCAGGCGCAGCAGAGGCAGCCGGCGAGGCTTGTGTTAGC
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS CAA 72 bp ACAAGCCTCGCCGGCTGCCTCTGCTGCGCCTGCGCGTaGCAGTGCCTCTTCCAGCTGTTGCTTGGACTCAGT +
Preference number: 6 (lower is better)
Translates to: TSLAGCLCCACA*QCLFQLLLGLS
Trigger: ACTGAGTCCAAGCAACAGCTGGAAGAGGCACTGCAACGCGCAGGCGCAGCAGAGGCAGCCGGCGAGGCTTGT
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS CAA 72 bp GTGGATCCAGACTTTGGGCGGTGGCTGATGCTAGGCTaGGTCCTAGATCCAGAGCGGGGTCGGAGGCGCGAC +
Preference number: 6 (lower is better)
Translates to: VDPDFGRWLMLG*VLDPERGRRRD
Trigger: GTCGCGCCTCCGACCCCGCTCTGGATCTAGGACCAAGCCTAGCATCAGCCACCGCCCAAAGTCTGGATCCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS CCA 72 bp GTTGCAGTGCCTCTTCCAGCTGTTGCTTGGACTCAGTaGCTGTCGCCTCCCAGCGCACCAAGGCTTCTGTCA +
Preference number: 6 (lower is better)
Translates to: VAVPLPAVAWTQ*LSPPSAPRLLS
Trigger: TGACAGAAGCCTTGGTGCGCTGGGAGGCGACAGCCACTGAGTCCAAGCAACAGCTGGAAGAGGCACTGCAAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS TCA 72 bp TGGTCCATCTCAATCTTCAGGGCCTTTAGTTGGGTCTaGAGCCGACTCTGGCTGTCTTTGCAGGCCTTGAGC +
Preference number: 6 (lower is better)
Translates to: WSISIFRAFSWV*SRLWLSLQALS
Trigger: GCTCAAGGCCTGCAAAGACAGCCAGAGTCGGCTTCAGACCCAACTAAAGGCCCTGAAGATTGAGATGGACCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2
CDS CAA 72 bp ATTCCATTCTCCAGCCCCATCTGCGTGCCTCTGACTTaGGCCTGGTCCATCTCAATCTTCAGGGCCTTTAGT +
Preference number: 6 (lower is better)
Translates to: IPFSSPICVPLT*AWSISIFRAFS
Trigger: ACTAAAGGCCCTGAAGATTGAGATGGACCAGGCCAAAGTCAGAGGCACGCAGATGGGGCTGGAGAATGGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207913.2