Pregenerated sensors for CCDC192 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000058925Ensembl transcript IDs: ENSMUST00000079738.10, ENSMUST00000123872.2, ENSMUST00000127130.9, ENSMUST00000135806.8
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ATGCTTGTCTTTGTATATTCCATAGGTGTCAGAAGAACTTCAGGGTaGCAGCACATGAATGATGTTCCTAGCTTTACTTGGAGCCTTGGG | + |
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Preference number: 1 (lower is better) Translates to: MLVFVYSIGVRRTSG*QHMNDVPSFTWSLG Trigger: CCCAAGGCTCCAAGTAAAGCTAGGAACATCATTCATGTGCTGCCACCCTGAAGTTCTTCTGACACCTATGGAATATACAAAGACAAGCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127130.9 |
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| 3UTR CCA 72 bp | AAATCTTCTGTAAGTCTGTCTTCACCTTGGGGGACCTaGGAAGTGCACTCTGCTTCCAGCTCCTCGATCTTC | + |
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Preference number: 3 (lower is better) Translates to: KSSVSLSSPWGT*EVHSASSSSIF Trigger: GAAGATCGAGGAGCTGGAAGCAGAGTGCACTTCCCAGGTCCCCCAAGGTGAAGACAGACTTACAGAAGATTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135806.8 |
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| 3UTR TCA 72 bp | TCTTTTCCTTTTCCGCTAAGGTGTCTTCGAGCTGAGTaGTCTTCTCCGTCTGAAGGGAAAGTTGGGTGGACA | + |
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Preference number: 3 (lower is better) Translates to: SFPFPLRCLRAE*SSPSEGKVGWT Trigger: TGTCCACCCAACTTTCCCTTCAGACGGAGAAGATCACTCAGCTCGAAGACACCTTAGCGGAAAAGGAAAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135806.8 |
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| 3UTR CCA 72 bp | TTTGTATATTCCATAGGTGTCAGAAGAACTTCAGGGTaGCAGCACATGAATGATGTTCCTAGCTTTACTTGG | + |
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Preference number: 3 (lower is better) Translates to: FVYSIGVRRTSG*QHMNDVPSFTW Trigger: CCAAGTAAAGCTAGGAACATCATTCATGTGCTGCCACCCTGAAGTTCTTCTGACACCTATGGAATATACAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127130.9 |
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| CDS-3UTR TCA 90 bp | GTCTTCACCTTGGGGGACCTGGGAAGTGCACTCTGCTTCCAGCTCCTCGATCTTTCTTGGCAGGCCCATTaGGATCCTCTGTCCATGGAC | + |
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Preference number: 4 (lower is better) Translates to: VFTLGDLGSALCFQLLDLSWQAH*DPLSMD Trigger: GTCCATGGACAGAGGATCTCAATGGGCCTGCCAAGA...AAGATCGAGGAGCTGGAAGCAGAGTGCACTTCCCAGGTCCCCCAAGGTGAAGAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135806.8 |
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| CDS-3UTR TCA 90 bp | GTCTTCACCTTGGGGGACCTGGGAAGTGCACTCTGCTTCCAGCTCCTCGATCTTACAACTTTCTTGCTGTaGCATCCTCCCATCTTGGCA | + |
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Preference number: 4 (lower is better) Translates to: VFTLGDLGSALCFQLLDLTTFLL*HPPILA Trigger: TGCCAAGATGGGAGGATGTCACAGCAAGAAAGTTGT...AAGATCGAGGAGCTGGAAGCAGAGTGCACTTCCCAGGTCCCCCAAGGTGAAGAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135806.8 |
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| CDS-3UTR CCA 90 bp | CTGCTTCCAGCTCCTCGATCTTCTTTTCCTTTTCCGCTAAGGTGTCTTCGAGCTGCTTTCTTCCACAGGTaGGAGACCTCCGGAGAGTAC | + |
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Preference number: 4 (lower is better) Translates to: LLPAPRSSFPFPLRCLRAAFFHR*ETSGEY Trigger: GTACTCTCCGGAGGTCTCCCACCTGTGGAAGAAAGC...AGCTCGAAGACACCTTAGCGGAAAAGGAAAAGAAGATCGAGGAGCTGGAAGCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135806.8 |
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| CDS-3UTR TCA 90 bp | GTAAGTCTGTCTTCACCTTGGGGGACCTGGGAAGTGCACTCTGCTTCCAGCTCCCTTCTCAAGGAGTTGTaGTTTTGTTGCTTCAGAAGC | + |
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Preference number: 4 (lower is better) Translates to: VSLSSPWGTWEVHSASSSLLKEL*FCCFRS Trigger: GCTTCTGAAGCAACAAAATCACAACTCCTTGAGAAG...GGAGCTGGAAGCAGAGTGCACTTCCCAGGTCCCCCAAGGTGAAGACAGACTTAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135806.8 |
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| CDS-3UTR GCA 90 bp | GTAAGTCTGTCTTCACCTTGGGGGACCTGGGAAGTGCACTCTGCTTCCAGCTCCGCTTTGACTTCAGCTTaGAACTTCTCAATGCACTTG | + |
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Preference number: 4 (lower is better) Translates to: VSLSSPWGTWEVHSASSSALTSA*NFSMHL Trigger: CAAGTGCATTGAGAAGTTGCAAGCTGAAGTCAAAGC...GGAGCTGGAAGCAGAGTGCACTTCCCAGGTCCCCCAAGGTGAAGACAGACTTAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135806.8 |
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| CDS-3UTR CCA 90 bp | GTAAGTCTGTCTTCACCTTGGGGGACCTGGGAAGTGCACTCTGCTTCCAGCTCCATGTTAAGTTTCTCCTaGGAGGCTTTGACTTCAGCT | + |
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Preference number: 4 (lower is better) Translates to: VSLSSPWGTWEVHSASSSMLSFS*EALTSA Trigger: AGCTGAAGTCAAAGCCTCCCAGGAGAAACTTAACAT...GGAGCTGGAAGCAGAGTGCACTTCCCAGGTCCCCCAAGGTGAAGACAGACTTAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135806.8 |
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| CDS-3UTR GCA 90 bp | TTGGGGGACCTGGGAAGTGCACTCTGCTTCCAGCTCCTCGATCTTCTTTTCCTTTCTAGCCTTTTCCTCTaGTTCCTTCAGGCAAATCTC | + |
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Preference number: 4 (lower is better) Translates to: LGDLGSALCFQLLDLLFLSSLFL*FLQANL Trigger: GAGATTTGCCTGAAGGAAGCAGAGGAAAAGGCTAGA...AAGGAAAAGAAGATCGAGGAGCTGGAAGCAGAGTGCACTTCCCAGGTCCCCCAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000135806.8 |
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| 3UTR CAA 72 bp | GCATTTACTGTGCATCGCAGACGGCTTGTCATATTCTaGCATGTAGGATGTGAGCTTAGGAGACTCCGGGAG | + |
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Preference number: 4 (lower is better) Translates to: AFTVHRRRLVIF*HVGCELRRLRE Trigger: CTCCCGGAGTCTCCTAAGCTCACATCCTACATGCAAGAATATGACAAGCCGTCTGCGATGCACAGTAAATGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127130.9 |
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| CDS-3UTR GCA 90 bp | GGTGTCTTCGAGCTGAGTGATCTTCTCCGTCTGAAGGGAAAGTTGGGTGGACAGGGATTACAACTTTCTTaGTGTGACATCCTCCCATCT | + |
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Preference number: 4 (lower is better) Translates to: GVFELSDLLRLKGKLGGQGLQLS*CDILPS Trigger: AGATGGGAGGATGTCACAGCAAGAAAGTTGTAATCC...CTGTCCACCCAACTTTCCCTTCAGACGGAGAAGATCACTCAGCTCGAAGACACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135806.8 |
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| CDS-3UTR TCA 90 bp | TATAAATCTTCTGTAAGTCTGTCTTCACCTTGGGGGACCTGGGAAGTGCACTCTTCTCCTGGGAGGCTTTaGCTTCAGCTTGCAACTTCT | + |
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Preference number: 4 (lower is better) Translates to: YKSSVSLSSPWGTWEVHSSPGRL*LQLATS Trigger: AGAAGTTGCAAGCTGAAGTCAAAGCCTCCCAGGAGA...AGAGTGCACTTCCCAGGTCCCCCAAGGTGAAGACAGACTTACAGAAGATTTATA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135806.8 |
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| CDS-3UTR CCA 90 bp | TTGGGGGACCTGGGAAGTGCACTCTGCTTCCAGCTCCTCGATCTTCTTTTCCTTGTACTTCCACTGAGTTaGTTGATGGATGTTAAGTTT | + |
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Preference number: 4 (lower is better) Translates to: LGDLGSALCFQLLDLLFLVLPLS*LMDVKF Trigger: AAACTTAACATCCATCAACCAACTCAGTGGAAGTAC...AAGGAAAAGAAGATCGAGGAGCTGGAAGCAGAGTGCACTTCCCAGGTCCCCCAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135806.8 |
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| CDS-3UTR GCA 90 bp | GCTTGTCTTTGTATATTCCATAGGTGTCAGAAGAACTTCAGGGTGGCAGCACATTCTAGCCTTTTCCTCTaGTTCCTTCAGGCAAATCTC | + |
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Preference number: 4 (lower is better) Translates to: ACLCIFHRCQKNFRVAAHSSLFL*FLQANL Trigger: GAGATTTGCCTGAAGGAAGCAGAGGAAAAGGCTAGA...ATGTGCTGCCACCCTGAAGTTCTTCTGACACCTATGGAATATACAAAGACAAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127130.9 |
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| CDS-3UTR TCA 90 bp | AAAATGCTTGTCTTTGTATATTCCATAGGTGTCAGAAGAACTTCAGGGTGGCAGACAACTTTCTTGCTGTaGCATCCTCCCATCTTGGCA | + |
|
Preference number: 4 (lower is better) Translates to: KMLVFVYSIGVRRTSGWQTTFLL*HPPILA Trigger: TGCCAAGATGGGAGGATGTCACAGCAAGAAAGTTGT...CTGCCACCCTGAAGTTCTTCTGACACCTATGGAATATACAAAGACAAGCATTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127130.9 |
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| CDS-3UTR GCA 90 bp | GCTTGTCTTTGTATATTCCATAGGTGTCAGAAGAACTTCAGGGTGGCAGCACATGGATTACAACTTTCTTaGTGTGACATCCTCCCATCT | + |
|
Preference number: 4 (lower is better) Translates to: ACLCIFHRCQKNFRVAAHGLQLS*CDILPS Trigger: AGATGGGAGGATGTCACAGCAAGAAAGTTGTAATCC...ATGTGCTGCCACCCTGAAGTTCTTCTGACACCTATGGAATATACAAAGACAAGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127130.9 |
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| CDS-3UTR GCA 90 bp | TATAAATCTTCTGTAAGTCTGTCTTCACCTTGGGGGACCTGGGAAGTGCACTCTCTTGCAACTTCTCAATaGACTTGTCTTTCTCAAGAA | + |
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Preference number: 4 (lower is better) Translates to: YKSSVSLSSPWGTWEVHSLATSQ*TCLSQE Trigger: TTCTTGAGAAAGACAAGTGCATTGAGAAGTTGCAAG...AGAGTGCACTTCCCAGGTCCCCCAAGGTGAAGACAGACTTACAGAAGATTTATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135806.8 |
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| CDS TCA 90 bp | GTCGCTTTCTTCCACAGGTGGGAGACCTCCGGAGAGTACTTCCACTaGGTTGGTTGCTCTAGGGAAGGGCCTTCCTTCACAGAGTGTCAT | + |
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Preference number: 5 (lower is better) Translates to: VAFFHRWETSGEYFH*VGCSREGPSFTECH Trigger: ATGACACTCTGTGAAGGAAGGCCCTTCCCTAGAGCAACCAACTCAGTGGAAGTACTCTCCGGAGGTCTCCCACCTGTGGAAGAAAGCGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079738.10 ENSMUST00000123872.2 |
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| CDS-3UTR CAA 90 bp | GGACGGACGGCAGGGGGTTCCTATAAATCTTCTGTAAGTCTGTCTTCACCTTGGATCTTGGCAGGCCCATaGAGATCCTCTGTCCATGGA | + |
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Preference number: 5 (lower is better) Translates to: GRTAGGSYKSSVSLSSPWILAGP*RSSVHG Trigger: TCCATGGACAGAGGATCTCAATGGGCCTGCCAAGAT...CCAAGGTGAAGACAGACTTACAGAAGATTTATAGGAACCCCCTGCCGTCCGTCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135806.8 |
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| CDS-3UTR CAA 90 bp | GGACGGACGGCAGGGGGTTCCTATAAATCTTCTGTAAGTCTGTCTTCACCTTGGTTCTCCTGGGAGGCTTaGACTTCAGCTTGCAACTTC | + |
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Preference number: 5 (lower is better) Translates to: GRTAGGSYKSSVSLSSPWFSWEA*TSACNF Trigger: GAAGTTGCAAGCTGAAGTCAAAGCCTCCCAGGAGAA...CCAAGGTGAAGACAGACTTACAGAAGATTTATAGGAACCCCCTGCCGTCCGTCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135806.8 |
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| CDS GCA 90 bp | AGAAAGGCTCCAATCAGAGCAAGCATTATGATCTCCCTGGGTGTGTaGCGTTTTCTTGCTGCTGCTTCTGCTGGACAGCTGTTTCTGATC | + |
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Preference number: 5 (lower is better) Translates to: RKAPIRASIMISLGV*RFLAAASAGQLFLI Trigger: GATCAGAAACAGCTGTCCAGCAGAAGCAGCAGCAAGAAAACGGCACACACCCAGGGAGATCATAATGCTTGCTCTGATTGGAGCCTTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123872.2 |
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| CDS CCA 90 bp | TTTCTTCCACAGGTGGGAGACCTCCGGAGAGTACTTCCACTGAGTTaGTTGATGGATGTTAAGTTTCTCCTGGGAGGCTTTGACTTCAGC | + |
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Preference number: 5 (lower is better) Translates to: FLPQVGDLRRVLPLS*LMDVKFLLGGFDFS Trigger: GCTGAAGTCAAAGCCTCCCAGGAGAAACTTAACATCCATCAACCAACTCAGTGGAAGTACTCTCCGGAGGTCTCCCACCTGTGGAAGAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135806.8 |
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| CDS-3UTR CAA 90 bp | CTGCTTCCAGCTCCTCGATCTTCTTTTCCTTTTCCGCTAAGGTGTCTTCGAGCTCTTCCACTGAGTTGGTaGATGGATGTTAAGTTTCTC | + |
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Preference number: 5 (lower is better) Translates to: LLPAPRSSFPFPLRCLRALPLSW*MDVKFL Trigger: GAGAAACTTAACATCCATCAACCAACTCAGTGGAAG...AGCTCGAAGACACCTTAGCGGAAAAGGAAAAGAAGATCGAGGAGCTGGAAGCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135806.8 |
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| CDS GCA 90 bp | GTCATTATCTTCTCATTGAGTTCCAGGACAGTGATGGCAGCCTCTTaGTTAGCTATTGCCAAATCAGTTTGTAGCTTTTTCACTGCCTTT | + |
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Preference number: 5 (lower is better) Translates to: VIIFSLSSRTVMAAS*LAIAKSVCSFFTAF Trigger: AAAGGCAGTGAAAAAGCTACAAACTGATTTGGCAATAGCTAAGCAAGAGGCTGCCATCACTGTCCTGGAACTCAATGAGAAGATAATGAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000079738.10 ENSMUST00000123872.2 |
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| CDS GCA 90 bp | AGTTTATGGATGTTAAGTTTCTCCTGGGAGGCTTTGACTTCAGCTTaGAACTTCTCAATGCACTTGTCTTTCTCAAGAACCATGTTTTCA | + |
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Preference number: 5 (lower is better) Translates to: SLWMLSFSWEALTSA*NFSMHLSFSRTMFS Trigger: TGAAAACATGGTTCTTGAGAAAGACAAGTGCATTGAGAAGTTGCAAGCTGAAGTCAAAGCCTCCCAGGAGAAACTTAACATCCATAAACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079738.10 ENSMUST00000123872.2 |
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| CDS TCA 72 bp | TTCCACAGGTGGGAGACCTCCGGAGAGTACTTCCACTaGGTTGGTTGCTCTAGGGAAGGGCCTTCCTTCACA | + |
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Preference number: 6 (lower is better) Translates to: FHRWETSGEYFH*VGCSREGPSFT Trigger: TGTGAAGGAAGGCCCTTCCCTAGAGCAACCAACTCAGTGGAAGTACTCTCCGGAGGTCTCCCACCTGTGGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079738.10 ENSMUST00000123872.2 |
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| CDS CAA 72 bp | ACAGGTGGGAGACCTCCGGAGAGTACTTCCACTGAGTaGGTTGCTCTAGGGAAGGGCCTTCCTTCACAGAGT | + |
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Preference number: 6 (lower is better) Translates to: TGGRPPESTSTE*VALGKGLPSQS Trigger: ACTCTGTGAAGGAAGGCCCTTCCCTAGAGCAACCAACTCAGTGGAAGTACTCTCCGGAGGTCTCCCACCTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079738.10 ENSMUST00000123872.2 |
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| CDS TCA 72 bp | TCTTGCTGTGACATCCTCCCATCTTGGCAGGCCCATTaGGATCCTCTGTCCATGGACAGACACCGACTAACC | + |
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Preference number: 6 (lower is better) Translates to: SCCDILPSWQAH*DPLSMDRHRLT Trigger: GGTTAGTCGGTGTCTGTCCATGGACAGAGGATCTCAATGGGCCTGCCAAGATGGGAGGATGTCACAGCAAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079738.10 ENSMUST00000135806.8 |
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| CDS GCA 72 bp | CCAATCAGAGCAAGCATTATGATCTCCCTGGGTGTGTaGCGTTTTCTTGCTGCTGCTTCTGCTGGACAGCTG | + |
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Preference number: 6 (lower is better) Translates to: PIRASIMISLGV*RFLAAASAGQL Trigger: CAGCTGTCCAGCAGAAGCAGCAGCAAGAAAACGGCACACACCCAGGGAGATCATAATGCTTGCTCTGATTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123872.2 |
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| CDS CAA 90 bp | CTTTCTTCCACAGGTGGGAGACCTCCGGAGAGTACTTCCACTGAGTaGGTTGCTCTAGGGAAGGGCCTTCCTTCACAGAGTGTCATTATC | + |
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Preference number: 6 (lower is better) Translates to: LSSTGGRPPESTSTE*VALGKGLPSQSVII Trigger: GATAATGACACTCTGTGAAGGAAGGCCCTTCCCTAGAGCAACCAACTCAGTGGAAGTACTCTCCGGAGGTCTCCCACCTGTGGAAGAAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079738.10 ENSMUST00000123872.2 |
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| CDS TCA 72 bp | TCTCCGTCTGAAGGGAAAGTTGGGTGGACAGCTCCATaGTCAGGGAAAACTTCCTGTCGCTTTCTTCCACAG | + |
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Preference number: 6 (lower is better) Translates to: SPSEGKVGWTAP*SGKTSCRFLPQ Trigger: CTGTGGAAGAAAGCGACAGGAAGTTTTCCCTGATCATGGAGCTGTCCACCCAACTTTCCCTTCAGACGGAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079738.10 ENSMUST00000123872.2 |
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| CDS GCA 72 bp | TATGATCTCCCTGGGTGTGTGCCGTTTTCTTGCTGCTaGTTCTGCTGGACAGCTGTTTCTGATCAACCCCTA | + |
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Preference number: 6 (lower is better) Translates to: YDLPGCVPFSCC*FCWTAVSDQPL Trigger: TAGGGGTTGATCAGAAACAGCTGTCCAGCAGAAGCAGCAGCAAGAAAACGGCACACACCCAGGGAGATCATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000123872.2 |
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| CDS GCA 72 bp | CATTATGATCTCCCTGGGTGTGTGCCGTTTTCTTGCTaGTGCTTCTGCTGGACAGCTGTTTCTGATCAACCC | + |
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Preference number: 6 (lower is better) Translates to: HYDLPGCVPFSC*CFCWTAVSDQP Trigger: GGGTTGATCAGAAACAGCTGTCCAGCAGAAGCAGCAGCAAGAAAACGGCACACACCCAGGGAGATCATAATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123872.2 |
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| CDS CCA 72 bp | CAGGTGGGAGACCTCCGGAGAGTACTTCCACTGAGTTaGTTGATGGATGTTAAGTTTCTCCTGGGAGGCTTT | + |
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Preference number: 6 (lower is better) Translates to: QVGDLRRVLPLS*LMDVKFLLGGF Trigger: AAAGCCTCCCAGGAGAAACTTAACATCCATCAACCAACTCAGTGGAAGTACTCTCCGGAGGTCTCCCACCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135806.8 |
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| CDS CAA 72 bp | GTGGGAGACCTCCGGAGAGTACTTCCACTGAGTTGGTaGATGGATGTTAAGTTTCTCCTGGGAGGCTTTGAC | + |
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Preference number: 6 (lower is better) Translates to: VGDLRRVLPLSW*MDVKFLLGGFD Trigger: GTCAAAGCCTCCCAGGAGAAACTTAACATCCATCAACCAACTCAGTGGAAGTACTCTCCGGAGGTCTCCCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135806.8 |
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| CDS CAA 90 bp | GCTCTAGGGAAGGGCCTTCCTTCACAGAGTGTCATTATCTTCTCATaGAGTTCCAGGACAGTGATGGCAGCCTCTTGCTTAGCTATTGCC | + |
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Preference number: 6 (lower is better) Translates to: ALGKGLPSQSVIIFS*SSRTVMAASCLAIA Trigger: GGCAATAGCTAAGCAAGAGGCTGCCATCACTGTCCTGGAACTCAATGAGAAGATAATGACACTCTGTGAAGGAAGGCCCTTCCCTAGAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079738.10 ENSMUST00000123872.2 |
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| CDS TCA 72 bp | GAGGTCTCAATATCTGGGATTACAACTTTCTTGCTGTaGCATCCTCCCATCTTGGCAGGCCCATTGAGATCC | + |
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Preference number: 6 (lower is better) Translates to: EVSISGITTFLL*HPPILAGPLRS Trigger: GGATCTCAATGGGCCTGCCAAGATGGGAGGATGTCACAGCAAGAAAGTTGTAATCCCAGATATTGAGACCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000079738.10 ENSMUST00000127130.9 ENSMUST00000135806.8 |
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| CDS GCA 72 bp | AAGCATTATGATCTCCCTGGGTGTGTGCCGTTTTCTTaGTGCTGCTTCTGCTGGACAGCTGTTTCTGATCAA | + |
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Preference number: 6 (lower is better) Translates to: KHYDLPGCVPFS*CCFCWTAVSDQ Trigger: TTGATCAGAAACAGCTGTCCAGCAGAAGCAGCAGCAAGAAAACGGCACACACCCAGGGAGATCATAATGCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123872.2 |
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| CDS TCA 72 bp | CCTTCCCTCCAGCATGGAGACCTTCTCAAGGAGTTGTaGTTTTGTTGCTTCAGAAGCTGTAAGCTGTTCCAA | + |
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Preference number: 6 (lower is better) Translates to: PSLQHGDLLKEL*FCCFRSCKLFQ Trigger: TTGGAACAGCTTACAGCTTCTGAAGCAACAAAATCACAACTCCTTGAGAAGGTCTCCATGCTGGAGGGAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000079738.10 ENSMUST00000123872.2 ENSMUST00000135806.8 |
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| CDS TCA 72 bp | GTGTTCCAGAGAAAATACTGTCTGTCCACTGTCTGGTaGGTTTCCAACAGAAAGGCTCCAATCAGAGCAAGC | + |
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Preference number: 6 (lower is better) Translates to: VFQRKYCLSTVW*VSNRKAPIRAS Trigger: GCTTGCTCTGATTGGAGCCTTTCTGTTGGAAACTCACCAGACAGTGGACAGACAGTATTTTCTCTGGAACAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123872.2 |
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| CDS CAA 72 bp | AAGGGCCTTCCTTCACAGAGTGTCATTATCTTCTCATaGAGTTCCAGGACAGTGATGGCAGCCTCTTGCTTA | + |
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Preference number: 6 (lower is better) Translates to: KGLPSQSVIIFS*SSRTVMAASCL Trigger: TAAGCAAGAGGCTGCCATCACTGTCCTGGAACTCAATGAGAAGATAATGACACTCTGTGAAGGAAGGCCCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079738.10 ENSMUST00000123872.2 |
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| CDS CAA 90 bp | TTCTCCTGGGAGGCTTTGACTTCAGCTTGCAACTTCTCAATGCACTaGTCTTTCTCAAGAACCATGTTTTCATACAACTCTCCACCAACG | + |
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Preference number: 6 (lower is better) Translates to: FSWEALTSACNFSMH*SFSRTMFSYNSPPT Trigger: CGTTGGTGGAGAGTTGTATGAAAACATGGTTCTTGAGAAAGACAAGTGCATTGAGAAGTTGCAAGCTGAAGTCAAAGCCTCCCAGGAGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000079738.10 ENSMUST00000123872.2 ENSMUST00000135806.8 |
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| CDS GCA 72 bp | ATGTTAAGTTTCTCCTGGGAGGCTTTGACTTCAGCTTaGAACTTCTCAATGCACTTGTCTTTCTCAAGAACC | + |
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Preference number: 6 (lower is better) Translates to: MLSFSWEALTSA*NFSMHLSFSRT Trigger: GGTTCTTGAGAAAGACAAGTGCATTGAGAAGTTGCAAGCTGAAGTCAAAGCCTCCCAGGAGAAACTTAACAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000079738.10 ENSMUST00000123872.2 ENSMUST00000135806.8 |
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| CDS GCA 72 bp | TTCTCATTGAGTTCCAGGACAGTGATGGCAGCCTCTTaGTTAGCTATTGCCAAATCAGTTTGTAGCTTTTTC | + |
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Preference number: 6 (lower is better) Translates to: FSLSSRTVMAAS*LAIAKSVCSFF Trigger: GAAAAAGCTACAAACTGATTTGGCAATAGCTAAGCAAGAGGCTGCCATCACTGTCCTGGAACTCAATGAGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000079738.10 ENSMUST00000123872.2 |
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| CDS CAA 72 bp | GATGTTAAGTTTCTCCTGGGAGGCTTTGACTTCAGCTaGCAACTTCTCAATGCACTTGTCTTTCTCAAGAAC | + |
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Preference number: 6 (lower is better) Translates to: DVKFLLGGFDFS*QLLNALVFLKN Trigger: GTTCTTGAGAAAGACAAGTGCATTGAGAAGTTGCAAGCTGAAGTCAAAGCCTCCCAGGAGAAACTTAACATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000079738.10 ENSMUST00000123872.2 ENSMUST00000135806.8 |
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| CDS CAA 90 bp | TGGTTGATGGATGTTAAGTTTCTCCTGGGAGGCTTTGACTTCAGCTaGCAACTTCTCAATGCACTTGTCTTTCTCAAGAACCATGTTTTC | + |
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Preference number: 6 (lower is better) Translates to: WLMDVKFLLGGFDFS*QLLNALVFLKNHVF Trigger: GAAAACATGGTTCTTGAGAAAGACAAGTGCATTGAGAAGTTGCAAGCTGAAGTCAAAGCCTCCCAGGAGAAACTTAACATCCATCAACCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135806.8 |
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| CDS CAA 72 bp | GAGGCTTTGACTTCAGCTTGCAACTTCTCAATGCACTaGTCTTTCTCAAGAACCATGTTTTCATACAACTCT | + |
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Preference number: 6 (lower is better) Translates to: EALTSACNFSMH*SFSRTMFSYNS Trigger: AGAGTTGTATGAAAACATGGTTCTTGAGAAAGACAAGTGCATTGAGAAGTTGCAAGCTGAAGTCAAAGCCTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000079738.10 ENSMUST00000123872.2 ENSMUST00000135806.8 |
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| CDS CAA 72 bp | TTTAGTTTATGGATGTTAAGTTTCTCCTGGGAGGCTTaGACTTCAGCTTGCAACTTCTCAATGCACTTGTCT | + |
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Preference number: 6 (lower is better) Translates to: FSLWMLSFSWEA*TSACNFSMHLS Trigger: AGACAAGTGCATTGAGAAGTTGCAAGCTGAAGTCAAAGCCTCCCAGGAGAAACTTAACATCCATAAACTAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079738.10 ENSMUST00000123872.2 |
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| CDS CAA 90 bp | TTTTTGTGCTTTAGTTTATGGATGTTAAGTTTCTCCTGGGAGGCTTaGACTTCAGCTTGCAACTTCTCAATGCACTTGTCTTTCTCAAGA | + |
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Preference number: 6 (lower is better) Translates to: FLCFSLWMLSFSWEA*TSACNFSMHLSFSR Trigger: TCTTGAGAAAGACAAGTGCATTGAGAAGTTGCAAGCTGAAGTCAAAGCCTCCCAGGAGAAACTTAACATCCATAAACTAAAGCACAAAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000079738.10 ENSMUST00000123872.2 |
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