Pregenerated sensors for CCDC183 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026940Ensembl transcript IDs: ENSMUST00000028309.4
Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CTTGCGCAGCTTCTCCCGAGCCACCTCCAAAGTACTGCGGCCGTGTaGCAGCCTCATGGACGTATCCTTTCCGCAGGCCTTGGAGATGGT | + |
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Preference number: 5 (lower is better) Translates to: LAQLLPSHLQSTAAV*QPHGRILSAGLGDG Trigger: ACCATCTCCAAGGCCTGCGGAAAGGATACGTCCATGAGGCTGGCACACGGCCGCAGTACTTTGGAGGTGGCTCGGGAGAAGCTGCGCAAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS GCA 90 bp | CAAAGACGTACTTGCGCAGCTTCTCCCGAGCCACCTCCAAAGTACTaGGGCCGTGTGCCAGCCTCATGGACGTATCCTTTCCGCAGGCCT | + |
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Preference number: 5 (lower is better) Translates to: QRRTCAASPEPPPKY*GRVPASWTYPFRRP Trigger: AGGCCTGCGGAAAGGATACGTCCATGAGGCTGGCACACGGCCGCAGTACTTTGGAGGTGGCTCGGGAGAAGCTGCGCAAGTACGTCTTTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS TCA 90 bp | CACGGCGGTACTTCTCGCTGGTCTCCTTGGTGTGAATCTTGTCTATaGGCTTCTTCTGCTGGTTCAGCCGGTTCTCCCGGGCTCGTCGCT | + |
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Preference number: 5 (lower is better) Translates to: HGGTSRWSPWCESCL*ASSAGSAGSPGLVA Trigger: AGCGACGAGCCCGGGAGAACCGGCTGAACCAGCAGAAGAAGCTCATAGACAAGATTCACACCAAGGAGACCAGCGAGAAGTACCGCCGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS CCA 90 bp | TCTCCCGAGCCACCTCCAAAGTACTGCGGCCGTGTGCCAGCCTCATaGACGTATCCTTTCCGCAGGCCTTGGAGATGGTCCATTGATCAT | + |
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Preference number: 5 (lower is better) Translates to: SPEPPPKYCGRVPAS*TYPFRRPWRWSIDH Trigger: ATGATCAATGGACCATCTCCAAGGCCTGCGGAAAGGATACGTCCATGAGGCTGGCACACGGCCGCAGTACTTTGGAGGTGGCTCGGGAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS TCA 90 bp | AAGTCCCTCCGGCCACGGCGGTACTTCTCGCTGGTCTCCTTGGTGTaGATCTTGTCTATGAGCTTCTTCTGCTGGTTCAGCCGGTTCTCC | + |
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Preference number: 5 (lower is better) Translates to: KSLRPRRYFSLVSLV*ILSMSFFCWFSRFS Trigger: GGAGAACCGGCTGAACCAGCAGAAGAAGCTCATAGACAAGATTCACACCAAGGAGACCAGCGAGAAGTACCGCCGTGGCCGGAGGGACTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS GCA 90 bp | CTGGTTCAGCCGGTTCTCCCGGGCTCGTCGCTCCTCGATGAAGGTTaGCTCCCCTTGCCTCATGTTCCTCTTGACCTCATCAGTAATCAT | + |
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Preference number: 5 (lower is better) Translates to: LVQPVLPGSSLLDEG*LPLPHVPLDLISNH Trigger: ATGATTACTGATGAGGTCAAGAGGAACATGAGGCAAGGGGAGGCAACCTTCATCGAGGAGCGACGAGCCCGGGAGAACCGGCTGAACCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS TCA 90 bp | TCACACCCTGGATCTGGAGTGCCCGACATTGTTCCTGGAGCCGAGTaGTGGTCCTTAGCTCCGTTATCTGTGCCTCCACAGCTGCTTCAT | + |
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Preference number: 5 (lower is better) Translates to: SHPGSGVPDIVPGAE*WSLAPLSVPPQLLH Trigger: ATGAAGCAGCTGTGGAGGCACAGATAACGGAGCTAAGGACCATCACTCGGCTCCAGGAACAATGTCGGGCACTCCAGATCCAGGGTGTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS CCA 90 bp | GTCTTCTCCTTCACACCCTGGATCTGGAGTGCCCGACATTGTTCCTaGAGCCGAGTGATGGTCCTTAGCTCCGTTATCTGTGCCTCCACA | + |
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Preference number: 5 (lower is better) Translates to: VFSFTPWIWSARHCS*SRVMVLSSVICAST Trigger: TGTGGAGGCACAGATAACGGAGCTAAGGACCATCACTCGGCTCCAGGAACAATGTCGGGCACTCCAGATCCAGGGTGTGAAGGAGAAGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS CCA 90 bp | CCGAGCAGTAGTTGGCCACCAGGTTCTGGAGCTTGTCTAGCTCTGTaGGGTACTCTGCCAGCACCTTCTTCAGGTAATCCAGCAGCACTT | + |
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Preference number: 5 (lower is better) Translates to: PSSSWPPGSGACLAL*GTLPAPSSGNPAAL Trigger: AAGTGCTGCTGGATTACCTGAAGAAGGTGCTGGCAGAGTACCCCACAGAGCTAGACAAGCTCCAGAACCTGGTGGCCAACTACTGCTCGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS GCA 90 bp | GGTGGATCAGTATGTTGTGTGTATTCACACGGTCAAAGACGTACTTaGGCAGCTTCTCCCGAGCCACCTCCAAAGTACTGCGGCCGTGTG | + |
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Preference number: 5 (lower is better) Translates to: GGSVCCVYSHGQRRT*AASPEPPPKYCGRV Trigger: CACACGGCCGCAGTACTTTGGAGGTGGCTCGGGAGAAGCTGCGCAAGTACGTCTTTGACCGTGTGAATACACACAACATACTGATCCACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS CCA 90 bp | TCCAGCTGCAAGCTCTCCAACTTCTGTCCGCGTCGCCGAACCAGGTaGATCAGTATGTTGTGTGTATTCACACGGTCAAAGACGTACTTG | + |
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Preference number: 5 (lower is better) Translates to: SSCKLSNFCPRRRTR*ISMLCVFTRSKTYL Trigger: CAAGTACGTCTTTGACCGTGTGAATACACACAACATACTGATCCACCTGGTTCGGCGACGCGGACAGAAGTTGGAGAGCTTGCAGCTGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS TCA 90 bp | CTCATCAGTAATCATCATGGCATCTTGGGACATGACTGTCATGTCTaGCAGCTCCGAGCAGTAGTTGGCCACCAGGTTCTGGAGCTTGTC | + |
|
Preference number: 5 (lower is better) Translates to: LISNHHGILGHDCHV*QLRAVVGHQVLELV Trigger: GACAAGCTCCAGAACCTGGTGGCCAACTACTGCTCGGAGCTGTCAGACATGACAGTCATGTCCCAAGATGCCATGATGATTACTGATGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS CCA 90 bp | GTCTGGATGACCAGCAGCAGCTGCTGGCCCTTATTCATGTTGTTTTaGGCCTGCTTGAGTCTTGCTTCTTCCTCTTCTAGCATGTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: VWMTSSSCWPLFMLF*ACLSLASSSSSMFF Trigger: GAAGAACATGCTAGAAGAGGAAGAAGCAAGACTCAAGCAGGCCCAAAACAACATGAATAAGGGCCAGCAGCTGCTGCTGGTCATCCAGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS CCA 90 bp | ATCTTCTTCTGGATAGAGTTAAAGCCAACAGCGCTGGGAGTCTGGTaGAACTTGAGCACAGCCTCCTCAAGTTCTAGCTTCTTCATCAGG | + |
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Preference number: 5 (lower is better) Translates to: IFFWIELKPTALGVW*NLSTASSSSSFFIR Trigger: CCTGATGAAGAAGCTAGAACTTGAGGAGGCTGTGCTCAAGTTCCACCAGACTCCCAGCGCTGTTGGCTTTAACTCTATCCAGAAGAAGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS GCA 90 bp | ATGACCAGCAGCAGCTGCTGGCCCTTATTCATGTTGTTTTGGGCCTaGTTGAGTCTTGCTTCTTCCTCTTCTAGCATGTTCTTCATCTTC | + |
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Preference number: 5 (lower is better) Translates to: MTSSSCWPLFMLFWA*LSLASSSSSMFFIF Trigger: GAAGATGAAGAACATGCTAGAAGAGGAAGAAGCAAGACTCAAGCAGGCCCAAAACAACATGAATAAGGGCCAGCAGCTGCTGCTGGTCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS CCA 90 bp | TTCATCTTCTTCTGGATAGAGTTAAAGCCAACAGCGCTGGGAGTCTaGTGGAACTTGAGCACAGCCTCCTCAAGTTCTAGCTTCTTCATC | + |
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Preference number: 5 (lower is better) Translates to: FIFFWIELKPTALGV*WNLSTASSSSSFFI Trigger: GATGAAGAAGCTAGAACTTGAGGAGGCTGTGCTCAAGTTCCACCAGACTCCCAGCGCTGTTGGCTTTAACTCTATCCAGAAGAAGATGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS CCA 90 bp | GTACACATCAAGAGTGTTAGAGACTGCTATTTCTTTCTGGAAGGTTaGCAAGGTGATGCCGATGAGCCGGATGTAGAGGTTGTCAATACC | + |
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Preference number: 5 (lower is better) Translates to: VHIKSVRDCYFFLEG*QGDADEPDVEVVNT Trigger: GGTATTGACAACCTCTACATCCGGCTCATCGGCATCACCTTGCCAACCTTCCAGAAAGAAATAGCAGTCTCTAACACTCTTGATGTGTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS CCA 72 bp | CCACCTCCAAAGTACTGCGGCCGTGTGCCAGCCTCATaGACGTATCCTTTCCGCAGGCCTTGGAGATGGTCC | + |
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Preference number: 6 (lower is better) Translates to: PPPKYCGRVPAS*TYPFRRPWRWS Trigger: GGACCATCTCCAAGGCCTGCGGAAAGGATACGTCCATGAGGCTGGCACACGGCCGCAGTACTTTGGAGGTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS GCA 72 bp | ACTTGCGCAGCTTCTCCCGAGCCACCTCCAAAGTACTaGGGCCGTGTGCCAGCCTCATGGACGTATCCTTTC | + |
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Preference number: 6 (lower is better) Translates to: TCAASPEPPPKY*GRVPASWTYPF Trigger: GAAAGGATACGTCCATGAGGCTGGCACACGGCCGCAGTACTTTGGAGGTGGCTCGGGAGAAGCTGCGCAAGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS CAA 90 bp | TGGGCTCCTCGGCGGAGGTTGCTGCGCAGGATTCCCATTGTAGCTTaGTTCTGTGCTGTCTTCTCCTTCACACCCTGGATCTGGAGTGCC | + |
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Preference number: 6 (lower is better) Translates to: WAPRRRLLRRIPIVA*FCAVFSFTPWIWSA Trigger: GGCACTCCAGATCCAGGGTGTGAAGGAGAAGACAGCACAGAACAAAGCTACAATGGGAATCCTGCGCAGCAACCTCCGCCGAGGAGCCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS CAA 72 bp | GGTCCATTGATCATGCTTCTTAGCCAAAGCCCAGTCTaGGGCTCCTCGGCGGAGGTTGCTGCGCAGGATTCC | + |
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Preference number: 6 (lower is better) Translates to: GPLIMLLSQSPV*GSSAEVAAQDS Trigger: GGAATCCTGCGCAGCAACCTCCGCCGAGGAGCCCAAGACTGGGCTTTGGCTAAGAAGCATGATCAATGGACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS TCA 72 bp | GGATCTGGAGTGCCCGACATTGTTCCTGGAGCCGAGTaGTGGTCCTTAGCTCCGTTATCTGTGCCTCCACAG | + |
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Preference number: 6 (lower is better) Translates to: GSGVPDIVPGAE*WSLAPLSVPPQ Trigger: CTGTGGAGGCACAGATAACGGAGCTAAGGACCATCACTCGGCTCCAGGAACAATGTCGGGCACTCCAGATCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS CCA 72 bp | TTTTTGGCTCCCTTGAGCTTCGCCTCGATCAGCTGTTaGGCCTGTTTCTTTATCTCCGCCCGCGAAGGGACG | + |
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Preference number: 6 (lower is better) Translates to: FLAPLSFASISC*ACFFISAREGT Trigger: CGTCCCTTCGCGGGCGGAGATAAAGAAACAGGCCCAACAGCTGATCGAGGCGAAGCTCAAGGGAGCCAAAAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS CAA 72 bp | CTTTTTGGCTCCCTTGAGCTTCGCCTCGATCAGCTGTaGGGCCTGTTTCTTTATCTCCGCCCGCGAAGGGAC | + |
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Preference number: 6 (lower is better) Translates to: LFGSLELRLDQL*GLFLYLRPRRD Trigger: GTCCCTTCGCGGGCGGAGATAAAGAAACAGGCCCAACAGCTGATCGAGGCGAAGCTCAAGGGAGCCAAAAAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS CAA 90 bp | CTTGGAGATGGTCCATTGATCATGCTTCTTAGCCAAAGCCCAGTCTaGGGCTCCTCGGCGGAGGTTGCTGCGCAGGATTCCCATTGTAGC | + |
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Preference number: 6 (lower is better) Translates to: LGDGPLIMLLSQSPV*GSSAEVAAQDSHCS Trigger: GCTACAATGGGAATCCTGCGCAGCAACCTCCGCCGAGGAGCCCAAGACTGGGCTTTGGCTAAGAAGCATGATCAATGGACCATCTCCAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS TCA 72 bp | CGGCCACGGCGGTACTTCTCGCTGGTCTCCTTGGTGTaGATCTTGTCTATGAGCTTCTTCTGCTGGTTCAGC | + |
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Preference number: 6 (lower is better) Translates to: RPRRYFSLVSLV*ILSMSFFCWFS Trigger: GCTGAACCAGCAGAAGAAGCTCATAGACAAGATTCACACCAAGGAGACCAGCGAGAAGTACCGCCGTGGCCG 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS GCA 72 bp | AGGAAGCGGCCAGCTATGTCCCAGAGGTGGGAGCACTaGACAGCAGATTTGACCCTCTCTACCAAAGTAGTC | + |
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Preference number: 6 (lower is better) Translates to: RKRPAMSQRWEH*TADLTLSTKVV Trigger: GACTACTTTGGTAGAGAGGGTCAAATCTGCTGTGCAGTGCTCCCACCTCTGGGACATAGCTGGCCGCTTCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS CAA 72 bp | CCGGGCTCGTCGCTCCTCGATGAAGGTTGCCTCCCCTaGCCTCATGTTCCTCTTGACCTCATCAGTAATCAT | + |
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Preference number: 6 (lower is better) Translates to: PGSSLLDEGCLP*PHVPLDLISNH Trigger: ATGATTACTGATGAGGTCAAGAGGAACATGAGGCAAGGGGAGGCAACCTTCATCGAGGAGCGACGAGCCCGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS TCA 72 bp | ACTTCTCGCTGGTCTCCTTGGTGTGAATCTTGTCTATaGGCTTCTTCTGCTGGTTCAGCCGGTTCTCCCGGG | + |
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Preference number: 6 (lower is better) Translates to: TSRWSPWCESCL*ASSAGSAGSPG Trigger: CCCGGGAGAACCGGCTGAACCAGCAGAAGAAGCTCATAGACAAGATTCACACCAAGGAGACCAGCGAGAAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS CCA 72 bp | TTCACACCCTGGATCTGGAGTGCCCGACATTGTTCCTaGAGCCGAGTGATGGTCCTTAGCTCCGTTATCTGT | + |
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Preference number: 6 (lower is better) Translates to: FTPWIWSARHCS*SRVMVLSSVIC Trigger: ACAGATAACGGAGCTAAGGACCATCACTCGGCTCCAGGAACAATGTCGGGCACTCCAGATCCAGGGTGTGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS CCA 72 bp | AGTTGGCCACCAGGTTCTGGAGCTTGTCTAGCTCTGTaGGGTACTCTGCCAGCACCTTCTTCAGGTAATCCA | + |
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Preference number: 6 (lower is better) Translates to: SWPPGSGACLAL*GTLPAPSSGNP Trigger: TGGATTACCTGAAGAAGGTGCTGGCAGAGTACCCCACAGAGCTAGACAAGCTCCAGAACCTGGTGGCCAACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS CAA 90 bp | AGGTGGATCAGTATGTTGTGTGTATTCACACGGTCAAAGACGTACTaGCGCAGCTTCTCCCGAGCCACCTCCAAAGTACTGCGGCCGTGT | + |
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Preference number: 6 (lower is better) Translates to: RWISMLCVFTRSKTY*RSFSRATSKVLRPC Trigger: ACACGGCCGCAGTACTTTGGAGGTGGCTCGGGAGAAGCTGCGCAAGTACGTCTTTGACCGTGTGAATACACACAACATACTGATCCACCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS CAA 90 bp | CTCTCCAACTTCTGTCCGCGTCGCCGAACCAGGTGGATCAGTATGTaGTGTGTATTCACACGGTCAAAGACGTACTTGCGCAGCTTCTCC | + |
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Preference number: 6 (lower is better) Translates to: LSNFCPRRRTRWISM*CVFTRSKTYLRSFS Trigger: GGAGAAGCTGCGCAAGTACGTCTTTGACCGTGTGAATACACACAACATACTGATCCACCTGGTTCGGCGACGCGGACAGAAGTTGGAGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS CAA 72 bp | TTCTGTCCGCGTCGCCGAACCAGGTGGATCAGTATGTaGTGTGTATTCACACGGTCAAAGACGTACTTGCGC | + |
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Preference number: 6 (lower is better) Translates to: FCPRRRTRWISM*CVFTRSKTYLR Trigger: GCGCAAGTACGTCTTTGACCGTGTGAATACACACAACATACTGATCCACCTGGTTCGGCGACGCGGACAGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS CAA 90 bp | TTCTGGATAGAGTTAAAGCCAACAGCGCTGGGAGTCTGGTGGAACTaGAGCACAGCCTCCTCAAGTTCTAGCTTCTTCATCAGGGCCTCT | + |
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Preference number: 6 (lower is better) Translates to: FWIELKPTALGVWWN*STASSSSSFFIRAS Trigger: AGAGGCCCTGATGAAGAAGCTAGAACTTGAGGAGGCTGTGCTCAAGTTCCACCAGACTCCCAGCGCTGTTGGCTTTAACTCTATCCAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS CAA 90 bp | CTTTTTCTTCTTTTTGGCTCCCTTGAGCTTCGCCTCGATCAGCTGTaGGGCCTGTTTCTTTATCTCCGCCCGCGAAGGGACGTAACTATG | + |
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Preference number: 6 (lower is better) Translates to: LFLLFGSLELRLDQL*GLFLYLRPRRDVTM Trigger: CATAGTTACGTCCCTTCGCGGGCGGAGATAAAGAAACAGGCCCAACAGCTGATCGAGGCGAAGCTCAAGGGAGCCAAAAAGAAGAAAAAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS TCA 72 bp | AATCATCATGGCATCTTGGGACATGACTGTCATGTCTaGCAGCTCCGAGCAGTAGTTGGCCACCAGGTTCTG | + |
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Preference number: 6 (lower is better) Translates to: NHHGILGHDCHV*QLRAVVGHQVL Trigger: CAGAACCTGGTGGCCAACTACTGCTCGGAGCTGTCAGACATGACAGTCATGTCCCAAGATGCCATGATGATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS GCA 72 bp | GTATGTTGTGTGTATTCACACGGTCAAAGACGTACTTaGGCAGCTTCTCCCGAGCCACCTCCAAAGTACTGC | + |
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Preference number: 6 (lower is better) Translates to: VCCVYSHGQRRT*AASPEPPPKYC Trigger: GCAGTACTTTGGAGGTGGCTCGGGAGAAGCTGCGCAAGTACGTCTTTGACCGTGTGAATACACACAACATAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS CCA 72 bp | TGGATAGAGTTAAAGCCAACAGCGCTGGGAGTCTGGTaGAACTTGAGCACAGCCTCCTCAAGTTCTAGCTTC | + |
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Preference number: 6 (lower is better) Translates to: WIELKPTALGVW*NLSTASSSSSF Trigger: GAAGCTAGAACTTGAGGAGGCTGTGCTCAAGTTCCACCAGACTCCCAGCGCTGTTGGCTTTAACTCTATCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS CCA 72 bp | TTCTGGATAGAGTTAAAGCCAACAGCGCTGGGAGTCTaGTGGAACTTGAGCACAGCCTCCTCAAGTTCTAGC | + |
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Preference number: 6 (lower is better) Translates to: FWIELKPTALGV*WNLSTASSSSS Trigger: GCTAGAACTTGAGGAGGCTGTGCTCAAGTTCCACCAGACTCCCAGCGCTGTTGGCTTTAACTCTATCCAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS CCA 72 bp | ACCAGCAGCAGCTGCTGGCCCTTATTCATGTTGTTTTaGGCCTGCTTGAGTCTTGCTTCTTCCTCTTCTAGC | + |
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Preference number: 6 (lower is better) Translates to: TSSSCWPLFMLF*ACLSLASSSSS Trigger: GCTAGAAGAGGAAGAAGCAAGACTCAAGCAGGCCCAAAACAACATGAATAAGGGCCAGCAGCTGCTGCTGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS CAA 72 bp | GCTATGTCCCAGAGGTGGGAGCACTGCACAGCAGATTaGACCCTCTCTACCAAAGTAGTCACTTTTGTCTGG | + |
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Preference number: 6 (lower is better) Translates to: AMSQRWEHCTAD*TLSTKVVTFVW Trigger: CCAGACAAAAGTGACTACTTTGGTAGAGAGGGTCAAATCTGCTGTGCAGTGCTCCCACCTCTGGGACATAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS CAA 72 bp | GAGTTAAAGCCAACAGCGCTGGGAGTCTGGTGGAACTaGAGCACAGCCTCCTCAAGTTCTAGCTTCTTCATC | + |
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Preference number: 6 (lower is better) Translates to: ELKPTALGVWWN*STASSSSSFFI Trigger: GATGAAGAAGCTAGAACTTGAGGAGGCTGTGCTCAAGTTCCACCAGACTCCCAGCGCTGTTGGCTTTAACTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS CAA 72 bp | TGGATGACCAGCAGCAGCTGCTGGCCCTTATTCATGTaGTTTTGGGCCTGCTTGAGTCTTGCTTCTTCCTCT | + |
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Preference number: 6 (lower is better) Translates to: WMTSSSCWPLFM*FWACLSLASSS Trigger: AGAGGAAGAAGCAAGACTCAAGCAGGCCCAAAACAACATGAATAAGGGCCAGCAGCTGCTGCTGGTCATCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS CAA 90 bp | AAGCGGCCAGCTATGTCCCAGAGGTGGGAGCACTGCACAGCAGATTaGACCCTCTCTACCAAAGTAGTCACTTTTGTCTGGTATTGTATG | + |
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Preference number: 6 (lower is better) Translates to: KRPAMSQRWEHCTAD*TLSTKVVTFVWYCM Trigger: CATACAATACCAGACAAAAGTGACTACTTTGGTAGAGAGGGTCAAATCTGCTGTGCAGTGCTCCCACCTCTGGGACATAGCTGGCCGCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS CAA 90 bp | ATACCTGTCTGGATGACCAGCAGCAGCTGCTGGCCCTTATTCATGTaGTTTTGGGCCTGCTTGAGTCTTGCTTCTTCCTCTTCTAGCATG | + |
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Preference number: 6 (lower is better) Translates to: IPVWMTSSSCWPLFM*FWACLSLASSSSSM Trigger: CATGCTAGAAGAGGAAGAAGCAAGACTCAAGCAGGCCCAAAACAACATGAATAAGGGCCAGCAGCTGCTGCTGGTCATCCAGACAGGTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS CAA 72 bp | AGTATGTTGTGTGTATTCACACGGTCAAAGACGTACTaGCGCAGCTTCTCCCGAGCCACCTCCAAAGTACTG | + |
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Preference number: 6 (lower is better) Translates to: SMLCVFTRSKTY*RSFSRATSKVL Trigger: CAGTACTTTGGAGGTGGCTCGGGAGAAGCTGCGCAAGTACGTCTTTGACCGTGTGAATACACACAACATACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS CAA 72 bp | CACCTTTGTGTCAACCTCCTCATTTCTGGACAACGTTaGCATGCGCTCAGCCAGGTAGATAAGCTTTCCCTC | + |
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Preference number: 6 (lower is better) Translates to: HLCVNLLISGQR*HALSQVDKLSL Trigger: GAGGGAAAGCTTATCTACCTGGCTGAGCGCATGCAAACGTTGTCCAGAAATGAGGAGGTTGACACAAAGGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS CAA 90 bp | GCTGGTGGTGATCTTGATCACCGTCTTTTCAATGTTGTTCTCCAGTaGGCGGATAATCTGAAGCTGCCGCAGTTCGTCCTTAGTAGCATC | + |
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Preference number: 6 (lower is better) Translates to: AGGDLDHRLFNVVLQ*ADNLKLPQFVLSSI Trigger: GATGCTACTAAGGACGAACTGCGGCAGCTTCAGATTATCCGCCAACTGGAGAACAACATTGAAAAGACGGTGATCAAGATCACCACCAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS CAA 90 bp | GGTGTCCCTCACCTTTGTGTCAACCTCCTCATTTCTGGACAACGTTaGCATGCGCTCAGCCAGGTAGATAAGCTTTCCCTCACAATAATC | + |
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Preference number: 6 (lower is better) Translates to: GVPHLCVNLLISGQR*HALSQVDKLSLTII Trigger: GATTATTGTGAGGGAAAGCTTATCTACCTGGCTGAGCGCATGCAAACGTTGTCCAGAAATGAGGAGGTTGACACAAAGGTGAGGGACACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS CCA 72 bp | TTCCTCTTGACCTCATCAGTAATCATCATGGCATCTTaGGACATGACTGTCATGTCTGACAGCTCCGAGCAG | + |
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Preference number: 6 (lower is better) Translates to: FLLTSSVIIMAS*DMTVMSDSSEQ Trigger: CTGCTCGGAGCTGTCAGACATGACAGTCATGTCCCAAGATGCCATGATGATTACTGATGAGGTCAAGAGGAA 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS TCA 72 bp | GTCTTTTCAATGTTGTTCTCCAGTTGGCGGATAATCTaGAGCTGCCGCAGTTCGTCCTTAGTAGCATCAGGT | + |
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Preference number: 6 (lower is better) Translates to: VFSMLFSSWRII*SCRSSSLVASG Trigger: ACCTGATGCTACTAAGGACGAACTGCGGCAGCTTCAGATTATCCGCCAACTGGAGAACAACATTGAAAAGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS TCA 72 bp | GCTGCTGGCCCTTATTCATGTTGTTTTGGGCCTGCTTaGGTCTTGCTTCTTCCTCTTCTAGCATGTTCTTCA | + |
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Preference number: 6 (lower is better) Translates to: AAGPYSCCFGPA*VLLLPLLACSS Trigger: TGAAGAACATGCTAGAAGAGGAAGAAGCAAGACTCAAGCAGGCCCAAAACAACATGAATAAGGGCCAGCAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS CCA 72 bp | AAGAGTGTTAGAGACTGCTATTTCTTTCTGGAAGGTTaGCAAGGTGATGCCGATGAGCCGGATGTAGAGGTT | + |
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Preference number: 6 (lower is better) Translates to: KSVRDCYFFLEG*QGDADEPDVEV Trigger: AACCTCTACATCCGGCTCATCGGCATCACCTTGCCAACCTTCCAGAAAGAAATAGCAGTCTCTAACACTCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS CAA 72 bp | GATCTTGATCACCGTCTTTTCAATGTTGTTCTCCAGTaGGCGGATAATCTGAAGCTGCCGCAGTTCGTCCTT | + |
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Preference number: 6 (lower is better) Translates to: DLDHRLFNVVLQ*ADNLKLPQFVL Trigger: AAGGACGAACTGCGGCAGCTTCAGATTATCCGCCAACTGGAGAACAACATTGAAAAGACGGTGATCAAGATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS CAA 90 bp | TATGTTTCTCTTTTAGAGTTGATGACTCCAAGGTGTCCCTCACCTTaGTGTCAACCTCCTCATTTCTGGACAACGTTTGCATGCGCTCAG | + |
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Preference number: 6 (lower is better) Translates to: YVSLLELMTPRCPSP*CQPPHFWTTFACAQ Trigger: CTGAGCGCATGCAAACGTTGTCCAGAAATGAGGAGGTTGACACAAAGGTGAGGGACACCTTGGAGTCATCAACTCTAAAAGAGAAACATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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| CDS CCA 72 bp | ATCCGCAAACTGGAAGGTTTCTATCATGTCCTCCTCTaGGTCCTCAAAGGTAATTCTGGTATTATGTTTCTC | + |
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Preference number: 6 (lower is better) Translates to: IRKLEGFYHVLL*VLKGNSGIMFL Trigger: GAGAAACATAATACCAGAATTACCTTTGAGGACCCAGAGGAGGACATGATAGAAACCTTCCAGTTTGCGGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028309.4 |
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