Pregenerated sensors for CCDC182 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034031Ensembl transcript IDs: ENSMUST00000037268.6
Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR GCA 90 bp | TTGAACCAAAGCAGTAAGGAAAAGAGAGGACCAATAGTCCAACTATaGAAGCAGACTGAAACGGCGAGGTCAGGAATTACACAAAGCCGG | + |
Preference number: 1 (lower is better) Translates to: LNQSSKEKRGPIVQL*KQTETARSGITQSR Trigger: CCGGCTTTGTGTAATTCCTGACCTCGCCGTTTCAGTCTGCTTGCATAGTTGGACTATTGGTCCTCTCTTTTCCTTACTGCTTTGGTTCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037268.6 |
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3UTR GCA 90 bp | GTTAAATCTGTTCAACACAACCAGTTTAAGAATACTCAAGAAAAATaGCCCTACATCCAAGCAACCGTACCATTACAAACGGGAAACAGT | + |
Preference number: 1 (lower is better) Translates to: VKSVQHNQFKNTQEK*PYIQATVPLQTGNS Trigger: ACTGTTTCCCGTTTGTAATGGTACGGTTGCTTGGATGTAGGGGCATTTTTCTTGAGTATTCTTAAACTGGTTGTGTTGAACAGATTTAAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037268.6 |
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3UTR CAA 90 bp | CCCACGGAGCAGCCTGTCTTCGGGGTAAATGGAGAGGAAGCAGAGTaGAACCAAAGCAGTAAGGAAAAGAGAGGACCAATAGTCCAACTA | + |
Preference number: 2 (lower is better) Translates to: PTEQPVFGVNGEEAE*NQSSKEKRGPIVQL Trigger: TAGTTGGACTATTGGTCCTCTCTTTTCCTTACTGCTTTGGTTCAACTCTGCTTCCTCTCCATTTACCCCGAAGACAGGCTGCTCCGTGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037268.6 |
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3UTR-3UTR TCA 90 bp | AACCAAAGCAGTAAGGAAAAGAGAGGACCAATAGTCCAACTATGCAAGCAGACTGGATGGTTACAGGTCTaGCATAGTGTCTGGGGCCTC | + |
Preference number: 2 (lower is better) Translates to: NQSSKEKRGPIVQLCKQTGWLQV*HSVWGL Trigger: GAGGCCCCAGACACTATGTCAGACCTGTAACCATCC...AGTCTGCTTGCATAGTTGGACTATTGGTCCTCTCTTTTCCTTACTGCTTTGGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037268.6 |
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3UTR-3UTR CCA 90 bp | CCGTACCATTACAAACGGGAAACAGTTCGAGGGGATGGTTACAGGTCTGACATATTTTGCCTCTCTGCATaGTGTTATTTTGGTAGCAGG | + |
Preference number: 2 (lower is better) Translates to: PYHYKRETVRGDGYRSDIFCLSA*CYFGSR Trigger: CCTGCTACCAAAATAACACCATGCAGAGAGGCAAAA...TATGTCAGACCTGTAACCATCCCCTCGAACTGTTTCCCGTTTGTAATGGTACGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000037268.6 |
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3UTR-3UTR GCA 90 bp | TCACGAAAGCCTGGAGTCATTAAAAGAAAGGTTAAATCTGTTCAACACAACCAGAATACTCAAGAAAAATaGCCCTACATCCAAGCAACC | + |
Preference number: 2 (lower is better) Translates to: SRKPGVIKRKVKSVQHNQNTQEK*PYIQAT Trigger: GGTTGCTTGGATGTAGGGGCATTTTTCTTGAGTATT...CTGGTTGTGTTGAACAGATTTAACCTTTCTTTTAATGACTCCAGGCTTTCGTGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037268.6 |
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3UTR-3UTR CAA 90 bp | TCACGAAAGCCTGGAGTCATTAAAAGAAAGGTTAAATCTGTTCAACACAACCAGCTGGGGCCTCCTTCCTaGACGAGGCTGGATAAACGG | + |
Preference number: 3 (lower is better) Translates to: SRKPGVIKRKVKSVQHNQLGPPS*TRLDKR Trigger: CCGTTTATCCAGCCTCGTCAAGGAAGGAGGCCCCAG...CTGGTTGTGTTGAACAGATTTAACCTTTCTTTTAATGACTCCAGGCTTTCGTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037268.6 |
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3UTR GCA 72 bp | AGCAGTAAGGAAAAGAGAGGACCAATAGTCCAACTATaGAAGCAGACTGAAACGGCGAGGTCAGGAATTACA | + |
Preference number: 3 (lower is better) Translates to: SSKEKRGPIVQL*KQTETARSGIT Trigger: TGTAATTCCTGACCTCGCCGTTTCAGTCTGCTTGCATAGTTGGACTATTGGTCCTCTCTTTTCCTTACTGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037268.6 |
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3UTR GCA 72 bp | GTTCAACACAACCAGTTTAAGAATACTCAAGAAAAATaGCCCTACATCCAAGCAACCGTACCATTACAAACG | + |
Preference number: 3 (lower is better) Translates to: VQHNQFKNTQEK*PYIQATVPLQT Trigger: CGTTTGTAATGGTACGGTTGCTTGGATGTAGGGGCATTTTTCTTGAGTATTCTTAAACTGGTTGTGTTGAAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037268.6 |
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CDS-3UTR GCA 90 bp | AAGAAAAATGCCCCTACATCCAAGCAACCGTACCATTACAAACGGGAAACAGTTGCCGCCTGCTCCTCCTaGTGTGCCAGGACGCCACTC | + |
Preference number: 4 (lower is better) Translates to: KKNAPTSKQPYHYKRETVAACSS*CARTPL Trigger: GAGTGGCGTCCTGGCACAGCAGGAGGAGCAGGCGGC...AACTGTTTCCCGTTTGTAATGGTACGGTTGCTTGGATGTAGGGGCATTTTTCTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037268.6 |
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CDS-3UTR GCA 90 bp | AACCGTACCATTACAAACGGGAAACAGTTCGAGGGGATGGTTACAGGTCTGACACAGTGTTCACGAAGCTaGTTCTCCCGGGGCAGGAGG | + |
Preference number: 4 (lower is better) Translates to: NRTITNGKQFEGMVTGLTQCSRS*FSRGRR Trigger: CCTCCTGCCCCGGGAGAAGCAGCTTCGTGAACACTG...TGTCAGACCTGTAACCATCCCCTCGAACTGTTTCCCGTTTGTAATGGTACGGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037268.6 |
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CDS-3UTR TCA 90 bp | AACCAAAGCAGTAAGGAAAAGAGAGGACCAATAGTCCAACTATGCAAGCAGACTGGGGCAGGAGGAAGGTaGGGACCTTGTTGCGGACGA | + |
Preference number: 4 (lower is better) Translates to: NQSSKEKRGPIVQLCKQTGAGGR*GPCCGR Trigger: TCGTCCGCAACAAGGTCCTCACCTTCCTCCTGCCCC...AGTCTGCTTGCATAGTTGGACTATTGGTCCTCTCTTTTCCTTACTGCTTTGGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037268.6 |
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CDS-3UTR GCA 90 bp | GTTCAACACAACCAGTTTAAGAATACTCAAGAAAAATGCCCCTACATCCAAGCACCTTGTTGCGGACGATaGCTCGGTCCTCCTCCTCCC | + |
Preference number: 4 (lower is better) Translates to: VQHNQFKNTQEKCPYIQAPCCGR*LGPPPP Trigger: GGGAGGAGGAGGACCGAGGCATCGTCCGCAACAAGG...TGCTTGGATGTAGGGGCATTTTTCTTGAGTATTCTTAAACTGGTTGTGTTGAAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037268.6 |
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CDS-3UTR GCA 90 bp | TCACGAAAGCCTGGAGTCATTAAAAGAAAGGTTAAATCTGTTCAACACAACCAGCTGCTCCTCCTGCTGTaGCAGGACGCCACTCATCTG | + |
Preference number: 4 (lower is better) Translates to: SRKPGVIKRKVKSVQHNQLLLLL*QDATHL Trigger: CAGATGAGTGGCGTCCTGGCACAGCAGGAGGAGCAG...CTGGTTGTGTTGAACAGATTTAACCTTTCTTTTAATGACTCCAGGCTTTCGTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037268.6 |
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CDS-3UTR TCA 90 bp | TCACGAAAGCCTGGAGTCATTAAAAGAAAGGTTAAATCTGTTCAACACAACCAGGCGGGTTGTGGCTCCTaGCCAACATGTTCTCCAACC | + |
Preference number: 4 (lower is better) Translates to: SRKPGVIKRKVKSVQHNQAGCGS*PTCSPT Trigger: GGTTGGAGAACATGTTGGTCAGGAGCCACAACCCGC...CTGGTTGTGTTGAACAGATTTAACCTTTCTTTTAATGACTCCAGGCTTTCGTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037268.6 |
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CDS-3UTR CCA 90 bp | TCACGAAAGCCTGGAGTCATTAAAAGAAAGGTTAAATCTGTTCAACACAACCAGAGGACGCCACTCATCTaGCAGAAGGCGTCCTCCAAG | + |
Preference number: 4 (lower is better) Translates to: SRKPGVIKRKVKSVQHNQRTPLI*QKASSK Trigger: CTTGGAGGACGCCTTCTGCCAGATGAGTGGCGTCCT...CTGGTTGTGTTGAACAGATTTAACCTTTCTTTTAATGACTCCAGGCTTTCGTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037268.6 |
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CDS-3UTR CCA 90 bp | TCTCAGGAAACCAATTGTGAAGTGATAAATCACGAAAGCCTGGAGTCATTAAAAGAAAGGTCCCCAGACTaGAGCCCGCTTTCCACCATC | + |
Preference number: 4 (lower is better) Translates to: SQETNCEVINHESLESLKERSPD*SPLSTI Trigger: GATGGTGGAAAGCGGGCTCCAGTCTGGGGACCTTTC...TTTTAATGACTCCAGGCTTTCGTGATTTATCACTTCACAATTGGTTTCCTGAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037268.6 |
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CDS-3UTR GCA 90 bp | TCTCAGGAAACCAATTGTGAAGTGATAAATCACGAAAGCCTGGAGTCATTAAAAACGGATGGCCTTCAGTaGCTCCTCCTTGAAGTCCTC | + |
Preference number: 4 (lower is better) Translates to: SQETNCEVINHESLESLKTDGLQ*LLLEVL Trigger: GAGGACTTCAAGGAGGAGGCACTGAAGGCCATCCGT...TTTTAATGACTCCAGGCTTTCGTGATTTATCACTTCACAATTGGTTTCCTGAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037268.6 |
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CDS-3UTR GCA 90 bp | GTTCAACACAACCAGTTTAAGAATACTCAAGAAAAATGCCCCTACATCCAAGCATTTCCACCATCTTCTTaGCCTGTAAGGTATTCACCT | + |
Preference number: 4 (lower is better) Translates to: VQHNQFKNTQEKCPYIQAFPPSS*PVRYSP Trigger: AGGTGAATACCTTACAGGGCAAGAAGATGGTGGAAA...TGCTTGGATGTAGGGGCATTTTTCTTGAGTATTCTTAAACTGGTTGTGTTGAAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037268.6 |
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CDS GCA 90 bp | TCCTCCTCCCTCAGCCGCTGCTTCACTCGCGCCGCCTGCTCCTCCTaGTGTGCCAGGACGCCACTCATCTGGCAGAAGGCGTCCTCCAAG | + |
Preference number: 5 (lower is better) Translates to: SSSLSRCFTRAACSS*CARTPLIWQKASSK Trigger: CTTGGAGGACGCCTTCTGCCAGATGAGTGGCGTCCTGGCACAGCAGGAGGAGCAGGCGGCGCGAGTGAAGCAGCGGCTGAGGGAGGAGGA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037268.6 |
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CDS CCA 90 bp | GCTCGCAGCGGGTTGTGGCTCCTGACCAACATGTTCTCCAACCGCTaGCAGTGTTCACGAAGCTGCTTCTCCCGGGGCAGGAGGAAGGTG | + |
Preference number: 5 (lower is better) Translates to: ARSGLWLLTNMFSNR*QCSRSCFSRGRRKV Trigger: CACCTTCCTCCTGCCCCGGGAGAAGCAGCTTCGTGAACACTGCCAGCGGTTGGAGAACATGTTGGTCAGGAGCCACAACCCGCTGCGAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037268.6 |
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CDS GCA 90 bp | CTCCTGACCAACATGTTCTCCAACCGCTGGCAGTGTTCACGAAGCTaGTTCTCCCGGGGCAGGAGGAAGGTGAGGACCTTGTTGCGGACG | + |
Preference number: 5 (lower is better) Translates to: LLTNMFSNRWQCSRS*FSRGRRKVRTLLRT Trigger: CGTCCGCAACAAGGTCCTCACCTTCCTCCTGCCCCGGGAGAAGCAGCTTCGTGAACACTGCCAGCGGTTGGAGAACATGTTGGTCAGGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037268.6 |
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CDS-3UTR CAA 90 bp | CACCCCACGGAGCAGCCTGTCTTCGGGGTAAATGGAGAGGAAGCAGAGTTGAACAGGAAGGTGAGGACCTaGTTGCGGACGATGCCTCGG | + |
Preference number: 5 (lower is better) Translates to: HPTEQPVFGVNGEEAELNRKVRT*LRTMPR Trigger: CCGAGGCATCGTCCGCAACAAGGTCCTCACCTTCCT...GTTCAACTCTGCTTCCTCTCCATTTACCCCGAAGACAGGCTGCTCCGTGGGGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037268.6 |
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CDS GCA 90 bp | ACTCATCTGGCAGAAGGCGTCCTCCAAGTAACGGATGGCCTTCAGTaGCTCCTCCTTGAAGTCCTCCAACTCCCTTTGTACCCCGGCCAC | + |
Preference number: 5 (lower is better) Translates to: THLAEGVLQVTDGLQ*LLLEVLQLPLYPGH Trigger: GTGGCCGGGGTACAAAGGGAGTTGGAGGACTTCAAGGAGGAGGCACTGAAGGCCATCCGTTACTTGGAGGACGCCTTCTGCCAGATGAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037268.6 |
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CDS TCA 90 bp | AGAAGGCGTCCTCCAAGTAACGGATGGCCTTCAGTGCCTCCTCCTTaGAGTCCTCCAACTCCCTTTGTACCCCGGCCACCTTCTGCTGTA | + |
Preference number: 5 (lower is better) Translates to: RRRPPSNGWPSVPPP*SPPTPFVPRPPSAV Trigger: TACAGCAGAAGGTGGCCGGGGTACAAAGGGAGTTGGAGGACTTCAAGGAGGAGGCACTGAAGGCCATCCGTTACTTGGAGGACGCCTTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037268.6 |
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CDS-3UTR CAA 90 bp | TCACCCCACGGAGCAGCCTGTCTTCGGGGTAAATGGAGAGGAAGCAGAGTTGAATTCAGTGCCTCCTCCTaGAAGTCCTCCAACTCCCTT | + |
Preference number: 5 (lower is better) Translates to: SPHGAACLRGKWRGSRVEFSASS*KSSNSL Trigger: AAGGGAGTTGGAGGACTTCAAGGAGGAGGCACTGAA...TTCAACTCTGCTTCCTCTCCATTTACCCCGAAGACAGGCTGCTCCGTGGGGTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037268.6 |
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CDS-3UTR CAA 90 bp | TCACGAAAGCCTGGAGTCATTAAAAGAAAGGTTAAATCTGTTCAACACAACCAGCTTTCCACCATCTTCTaGCCCTGTAAGGTATTCACC | + |
Preference number: 5 (lower is better) Translates to: SRKPGVIKRKVKSVQHNQLSTIF*PCKVFT Trigger: GGTGAATACCTTACAGGGCAAGAAGATGGTGGAAAG...CTGGTTGTGTTGAACAGATTTAACCTTTCTTTTAATGACTCCAGGCTTTCGTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037268.6 |
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CDS GCA 72 bp | CTCAGCCGCTGCTTCACTCGCGCCGCCTGCTCCTCCTaGTGTGCCAGGACGCCACTCATCTGGCAGAAGGCG | + |
Preference number: 6 (lower is better) Translates to: LSRCFTRAACSS*CARTPLIWQKA Trigger: CGCCTTCTGCCAGATGAGTGGCGTCCTGGCACAGCAGGAGGAGCAGGCGGCGCGAGTGAAGCAGCGGCTGAG 68% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037268.6 |
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CDS CAA 90 bp | TGTTCACGAAGCTGCTTCTCCCGGGGCAGGAGGAAGGTGAGGACCTaGTTGCGGACGATGCCTCGGTCCTCCTCCTCCCTCAGCCGCTGC | + |
Preference number: 6 (lower is better) Translates to: CSRSCFSRGRRKVRT*LRTMPRSSSSLSRC Trigger: GCAGCGGCTGAGGGAGGAGGAGGACCGAGGCATCGTCCGCAACAAGGTCCTCACCTTCCTCCTGCCCCGGGAGAAGCAGCTTCGTGAACA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037268.6 |
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CDS CCA 72 bp | TCCGCCTGGCTCTTCCTGATGGCTCGCAGCGGGTTGTaGCTCCTGACCAACATGTTCTCCAACCGCTGGCAG | + |
Preference number: 6 (lower is better) Translates to: SAWLFLMARSGL*LLTNMFSNRWQ Trigger: CTGCCAGCGGTTGGAGAACATGTTGGTCAGGAGCCACAACCCGCTGCGAGCCATCAGGAAGAGCCAGGCGGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037268.6 |
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CDS CAA 72 bp | CAGTCCGCCTGGCTCTTCCTGATGGCTCGCAGCGGGTaGTGGCTCCTGACCAACATGTTCTCCAACCGCTGG | + |
Preference number: 6 (lower is better) Translates to: QSAWLFLMARSG*WLLTNMFSNRW Trigger: CCAGCGGTTGGAGAACATGTTGGTCAGGAGCCACAACCCGCTGCGAGCCATCAGGAAGAGCCAGGCGGACTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037268.6 |
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CDS GCA 72 bp | AAGTCCTCCAACTCCCTTTGTACCCCGGCCACCTTCTaGTGTAGGATCTCCAAGTCGGCCGGCAGAGGGAGG | + |
Preference number: 6 (lower is better) Translates to: KSSNSLCTPATF*CRISKSAGRGR Trigger: CCTCCCTCTGCCGGCCGACTTGGAGATCCTACAGCAGAAGGTGGCCGGGGTACAAAGGGAGTTGGAGGACTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037268.6 |
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CDS TCA 72 bp | CCTCCAAGTAACGGATGGCCTTCAGTGCCTCCTCCTTaGAGTCCTCCAACTCCCTTTGTACCCCGGCCACCT | + |
Preference number: 6 (lower is better) Translates to: PPSNGWPSVPPP*SPPTPFVPRPP Trigger: AGGTGGCCGGGGTACAAAGGGAGTTGGAGGACTTCAAGGAGGAGGCACTGAAGGCCATCCGTTACTTGGAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037268.6 |
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CDS GCA 72 bp | GCAGAAGGCGTCCTCCAAGTAACGGATGGCCTTCAGTaGCTCCTCCTTGAAGTCCTCCAACTCCCTTTGTAC | + |
Preference number: 6 (lower is better) Translates to: AEGVLQVTDGLQ*LLLEVLQLPLY Trigger: GTACAAAGGGAGTTGGAGGACTTCAAGGAGGAGGCACTGAAGGCCATCCGTTACTTGGAGGACGCCTTCTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037268.6 |
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CDS CAA 72 bp | AGGTCCCCAGACTGGAGCCCGCTTTCCACCATCTTCTaGCCCTGTAAGGTATTCACCTTCATAAGAATGGAC | + |
Preference number: 6 (lower is better) Translates to: RSPDWSPLSTIF*PCKVFTFIRMD Trigger: GTCCATTCTTATGAAGGTGAATACCTTACAGGGCAAGAAGATGGTGGAAAGCGGGCTCCAGTCTGGGGACCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037268.6 |