RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CCDC182 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000034031

Ensembl transcript IDs: ENSMUST00000037268.6

Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TTGAACCAAAGCAGTAAGGAAAAGAGAGGACCAATAGTCCAACTATaGAAGCAGACTGAAACGGCGAGGTCAGGAATTACACAAAGCCGG +
Preference number: 1 (lower is better)
Translates to: LNQSSKEKRGPIVQL*KQTETARSGITQSR
Trigger: CCGGCTTTGTGTAATTCCTGACCTCGCCGTTTCAGTCTGCTTGCATAGTTGGACTATTGGTCCTCTCTTTTCCTTACTGCTTTGGTTCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037268.6
3UTR GCA 90 bp GTTAAATCTGTTCAACACAACCAGTTTAAGAATACTCAAGAAAAATaGCCCTACATCCAAGCAACCGTACCATTACAAACGGGAAACAGT +
Preference number: 1 (lower is better)
Translates to: VKSVQHNQFKNTQEK*PYIQATVPLQTGNS
Trigger: ACTGTTTCCCGTTTGTAATGGTACGGTTGCTTGGATGTAGGGGCATTTTTCTTGAGTATTCTTAAACTGGTTGTGTTGAACAGATTTAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037268.6
3UTR CAA 90 bp CCCACGGAGCAGCCTGTCTTCGGGGTAAATGGAGAGGAAGCAGAGTaGAACCAAAGCAGTAAGGAAAAGAGAGGACCAATAGTCCAACTA +
Preference number: 2 (lower is better)
Translates to: PTEQPVFGVNGEEAE*NQSSKEKRGPIVQL
Trigger: TAGTTGGACTATTGGTCCTCTCTTTTCCTTACTGCTTTGGTTCAACTCTGCTTCCTCTCCATTTACCCCGAAGACAGGCTGCTCCGTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037268.6
3UTR-3UTR TCA 90 bp AACCAAAGCAGTAAGGAAAAGAGAGGACCAATAGTCCAACTATGCAAGCAGACTGGATGGTTACAGGTCTaGCATAGTGTCTGGGGCCTC +
Preference number: 2 (lower is better)
Translates to: NQSSKEKRGPIVQLCKQTGWLQV*HSVWGL
Trigger: GAGGCCCCAGACACTATGTCAGACCTGTAACCATCC...AGTCTGCTTGCATAGTTGGACTATTGGTCCTCTCTTTTCCTTACTGCTTTGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037268.6
3UTR-3UTR CCA 90 bp CCGTACCATTACAAACGGGAAACAGTTCGAGGGGATGGTTACAGGTCTGACATATTTTGCCTCTCTGCATaGTGTTATTTTGGTAGCAGG +
Preference number: 2 (lower is better)
Translates to: PYHYKRETVRGDGYRSDIFCLSA*CYFGSR
Trigger: CCTGCTACCAAAATAACACCATGCAGAGAGGCAAAA...TATGTCAGACCTGTAACCATCCCCTCGAACTGTTTCCCGTTTGTAATGGTACGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000037268.6
3UTR-3UTR GCA 90 bp TCACGAAAGCCTGGAGTCATTAAAAGAAAGGTTAAATCTGTTCAACACAACCAGAATACTCAAGAAAAATaGCCCTACATCCAAGCAACC +
Preference number: 2 (lower is better)
Translates to: SRKPGVIKRKVKSVQHNQNTQEK*PYIQAT
Trigger: GGTTGCTTGGATGTAGGGGCATTTTTCTTGAGTATT...CTGGTTGTGTTGAACAGATTTAACCTTTCTTTTAATGACTCCAGGCTTTCGTGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037268.6
3UTR-3UTR CAA 90 bp TCACGAAAGCCTGGAGTCATTAAAAGAAAGGTTAAATCTGTTCAACACAACCAGCTGGGGCCTCCTTCCTaGACGAGGCTGGATAAACGG +
Preference number: 3 (lower is better)
Translates to: SRKPGVIKRKVKSVQHNQLGPPS*TRLDKR
Trigger: CCGTTTATCCAGCCTCGTCAAGGAAGGAGGCCCCAG...CTGGTTGTGTTGAACAGATTTAACCTTTCTTTTAATGACTCCAGGCTTTCGTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037268.6
3UTR GCA 72 bp AGCAGTAAGGAAAAGAGAGGACCAATAGTCCAACTATaGAAGCAGACTGAAACGGCGAGGTCAGGAATTACA +
Preference number: 3 (lower is better)
Translates to: SSKEKRGPIVQL*KQTETARSGIT
Trigger: TGTAATTCCTGACCTCGCCGTTTCAGTCTGCTTGCATAGTTGGACTATTGGTCCTCTCTTTTCCTTACTGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037268.6
3UTR GCA 72 bp GTTCAACACAACCAGTTTAAGAATACTCAAGAAAAATaGCCCTACATCCAAGCAACCGTACCATTACAAACG +
Preference number: 3 (lower is better)
Translates to: VQHNQFKNTQEK*PYIQATVPLQT
Trigger: CGTTTGTAATGGTACGGTTGCTTGGATGTAGGGGCATTTTTCTTGAGTATTCTTAAACTGGTTGTGTTGAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037268.6
CDS-3UTR GCA 90 bp AAGAAAAATGCCCCTACATCCAAGCAACCGTACCATTACAAACGGGAAACAGTTGCCGCCTGCTCCTCCTaGTGTGCCAGGACGCCACTC +
Preference number: 4 (lower is better)
Translates to: KKNAPTSKQPYHYKRETVAACSS*CARTPL
Trigger: GAGTGGCGTCCTGGCACAGCAGGAGGAGCAGGCGGC...AACTGTTTCCCGTTTGTAATGGTACGGTTGCTTGGATGTAGGGGCATTTTTCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037268.6
CDS-3UTR GCA 90 bp AACCGTACCATTACAAACGGGAAACAGTTCGAGGGGATGGTTACAGGTCTGACACAGTGTTCACGAAGCTaGTTCTCCCGGGGCAGGAGG +
Preference number: 4 (lower is better)
Translates to: NRTITNGKQFEGMVTGLTQCSRS*FSRGRR
Trigger: CCTCCTGCCCCGGGAGAAGCAGCTTCGTGAACACTG...TGTCAGACCTGTAACCATCCCCTCGAACTGTTTCCCGTTTGTAATGGTACGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037268.6
CDS-3UTR TCA 90 bp AACCAAAGCAGTAAGGAAAAGAGAGGACCAATAGTCCAACTATGCAAGCAGACTGGGGCAGGAGGAAGGTaGGGACCTTGTTGCGGACGA +
Preference number: 4 (lower is better)
Translates to: NQSSKEKRGPIVQLCKQTGAGGR*GPCCGR
Trigger: TCGTCCGCAACAAGGTCCTCACCTTCCTCCTGCCCC...AGTCTGCTTGCATAGTTGGACTATTGGTCCTCTCTTTTCCTTACTGCTTTGGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037268.6
CDS-3UTR GCA 90 bp GTTCAACACAACCAGTTTAAGAATACTCAAGAAAAATGCCCCTACATCCAAGCACCTTGTTGCGGACGATaGCTCGGTCCTCCTCCTCCC +
Preference number: 4 (lower is better)
Translates to: VQHNQFKNTQEKCPYIQAPCCGR*LGPPPP
Trigger: GGGAGGAGGAGGACCGAGGCATCGTCCGCAACAAGG...TGCTTGGATGTAGGGGCATTTTTCTTGAGTATTCTTAAACTGGTTGTGTTGAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037268.6
CDS-3UTR GCA 90 bp TCACGAAAGCCTGGAGTCATTAAAAGAAAGGTTAAATCTGTTCAACACAACCAGCTGCTCCTCCTGCTGTaGCAGGACGCCACTCATCTG +
Preference number: 4 (lower is better)
Translates to: SRKPGVIKRKVKSVQHNQLLLLL*QDATHL
Trigger: CAGATGAGTGGCGTCCTGGCACAGCAGGAGGAGCAG...CTGGTTGTGTTGAACAGATTTAACCTTTCTTTTAATGACTCCAGGCTTTCGTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037268.6
CDS-3UTR TCA 90 bp TCACGAAAGCCTGGAGTCATTAAAAGAAAGGTTAAATCTGTTCAACACAACCAGGCGGGTTGTGGCTCCTaGCCAACATGTTCTCCAACC +
Preference number: 4 (lower is better)
Translates to: SRKPGVIKRKVKSVQHNQAGCGS*PTCSPT
Trigger: GGTTGGAGAACATGTTGGTCAGGAGCCACAACCCGC...CTGGTTGTGTTGAACAGATTTAACCTTTCTTTTAATGACTCCAGGCTTTCGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037268.6
CDS-3UTR CCA 90 bp TCACGAAAGCCTGGAGTCATTAAAAGAAAGGTTAAATCTGTTCAACACAACCAGAGGACGCCACTCATCTaGCAGAAGGCGTCCTCCAAG +
Preference number: 4 (lower is better)
Translates to: SRKPGVIKRKVKSVQHNQRTPLI*QKASSK
Trigger: CTTGGAGGACGCCTTCTGCCAGATGAGTGGCGTCCT...CTGGTTGTGTTGAACAGATTTAACCTTTCTTTTAATGACTCCAGGCTTTCGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037268.6
CDS-3UTR CCA 90 bp TCTCAGGAAACCAATTGTGAAGTGATAAATCACGAAAGCCTGGAGTCATTAAAAGAAAGGTCCCCAGACTaGAGCCCGCTTTCCACCATC +
Preference number: 4 (lower is better)
Translates to: SQETNCEVINHESLESLKERSPD*SPLSTI
Trigger: GATGGTGGAAAGCGGGCTCCAGTCTGGGGACCTTTC...TTTTAATGACTCCAGGCTTTCGTGATTTATCACTTCACAATTGGTTTCCTGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037268.6
CDS-3UTR GCA 90 bp TCTCAGGAAACCAATTGTGAAGTGATAAATCACGAAAGCCTGGAGTCATTAAAAACGGATGGCCTTCAGTaGCTCCTCCTTGAAGTCCTC +
Preference number: 4 (lower is better)
Translates to: SQETNCEVINHESLESLKTDGLQ*LLLEVL
Trigger: GAGGACTTCAAGGAGGAGGCACTGAAGGCCATCCGT...TTTTAATGACTCCAGGCTTTCGTGATTTATCACTTCACAATTGGTTTCCTGAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037268.6
CDS-3UTR GCA 90 bp GTTCAACACAACCAGTTTAAGAATACTCAAGAAAAATGCCCCTACATCCAAGCATTTCCACCATCTTCTTaGCCTGTAAGGTATTCACCT +
Preference number: 4 (lower is better)
Translates to: VQHNQFKNTQEKCPYIQAFPPSS*PVRYSP
Trigger: AGGTGAATACCTTACAGGGCAAGAAGATGGTGGAAA...TGCTTGGATGTAGGGGCATTTTTCTTGAGTATTCTTAAACTGGTTGTGTTGAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037268.6
CDS GCA 90 bp TCCTCCTCCCTCAGCCGCTGCTTCACTCGCGCCGCCTGCTCCTCCTaGTGTGCCAGGACGCCACTCATCTGGCAGAAGGCGTCCTCCAAG +
Preference number: 5 (lower is better)
Translates to: SSSLSRCFTRAACSS*CARTPLIWQKASSK
Trigger: CTTGGAGGACGCCTTCTGCCAGATGAGTGGCGTCCTGGCACAGCAGGAGGAGCAGGCGGCGCGAGTGAAGCAGCGGCTGAGGGAGGAGGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037268.6
CDS CCA 90 bp GCTCGCAGCGGGTTGTGGCTCCTGACCAACATGTTCTCCAACCGCTaGCAGTGTTCACGAAGCTGCTTCTCCCGGGGCAGGAGGAAGGTG +
Preference number: 5 (lower is better)
Translates to: ARSGLWLLTNMFSNR*QCSRSCFSRGRRKV
Trigger: CACCTTCCTCCTGCCCCGGGAGAAGCAGCTTCGTGAACACTGCCAGCGGTTGGAGAACATGTTGGTCAGGAGCCACAACCCGCTGCGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037268.6
CDS GCA 90 bp CTCCTGACCAACATGTTCTCCAACCGCTGGCAGTGTTCACGAAGCTaGTTCTCCCGGGGCAGGAGGAAGGTGAGGACCTTGTTGCGGACG +
Preference number: 5 (lower is better)
Translates to: LLTNMFSNRWQCSRS*FSRGRRKVRTLLRT
Trigger: CGTCCGCAACAAGGTCCTCACCTTCCTCCTGCCCCGGGAGAAGCAGCTTCGTGAACACTGCCAGCGGTTGGAGAACATGTTGGTCAGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037268.6
CDS-3UTR CAA 90 bp CACCCCACGGAGCAGCCTGTCTTCGGGGTAAATGGAGAGGAAGCAGAGTTGAACAGGAAGGTGAGGACCTaGTTGCGGACGATGCCTCGG +
Preference number: 5 (lower is better)
Translates to: HPTEQPVFGVNGEEAELNRKVRT*LRTMPR
Trigger: CCGAGGCATCGTCCGCAACAAGGTCCTCACCTTCCT...GTTCAACTCTGCTTCCTCTCCATTTACCCCGAAGACAGGCTGCTCCGTGGGGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037268.6
CDS GCA 90 bp ACTCATCTGGCAGAAGGCGTCCTCCAAGTAACGGATGGCCTTCAGTaGCTCCTCCTTGAAGTCCTCCAACTCCCTTTGTACCCCGGCCAC +
Preference number: 5 (lower is better)
Translates to: THLAEGVLQVTDGLQ*LLLEVLQLPLYPGH
Trigger: GTGGCCGGGGTACAAAGGGAGTTGGAGGACTTCAAGGAGGAGGCACTGAAGGCCATCCGTTACTTGGAGGACGCCTTCTGCCAGATGAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037268.6
CDS TCA 90 bp AGAAGGCGTCCTCCAAGTAACGGATGGCCTTCAGTGCCTCCTCCTTaGAGTCCTCCAACTCCCTTTGTACCCCGGCCACCTTCTGCTGTA +
Preference number: 5 (lower is better)
Translates to: RRRPPSNGWPSVPPP*SPPTPFVPRPPSAV
Trigger: TACAGCAGAAGGTGGCCGGGGTACAAAGGGAGTTGGAGGACTTCAAGGAGGAGGCACTGAAGGCCATCCGTTACTTGGAGGACGCCTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037268.6
CDS-3UTR CAA 90 bp TCACCCCACGGAGCAGCCTGTCTTCGGGGTAAATGGAGAGGAAGCAGAGTTGAATTCAGTGCCTCCTCCTaGAAGTCCTCCAACTCCCTT +
Preference number: 5 (lower is better)
Translates to: SPHGAACLRGKWRGSRVEFSASS*KSSNSL
Trigger: AAGGGAGTTGGAGGACTTCAAGGAGGAGGCACTGAA...TTCAACTCTGCTTCCTCTCCATTTACCCCGAAGACAGGCTGCTCCGTGGGGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037268.6
CDS-3UTR CAA 90 bp TCACGAAAGCCTGGAGTCATTAAAAGAAAGGTTAAATCTGTTCAACACAACCAGCTTTCCACCATCTTCTaGCCCTGTAAGGTATTCACC +
Preference number: 5 (lower is better)
Translates to: SRKPGVIKRKVKSVQHNQLSTIF*PCKVFT
Trigger: GGTGAATACCTTACAGGGCAAGAAGATGGTGGAAAG...CTGGTTGTGTTGAACAGATTTAACCTTTCTTTTAATGACTCCAGGCTTTCGTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037268.6
CDS GCA 72 bp CTCAGCCGCTGCTTCACTCGCGCCGCCTGCTCCTCCTaGTGTGCCAGGACGCCACTCATCTGGCAGAAGGCG +
Preference number: 6 (lower is better)
Translates to: LSRCFTRAACSS*CARTPLIWQKA
Trigger: CGCCTTCTGCCAGATGAGTGGCGTCCTGGCACAGCAGGAGGAGCAGGCGGCGCGAGTGAAGCAGCGGCTGAG
68% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037268.6
CDS CAA 90 bp TGTTCACGAAGCTGCTTCTCCCGGGGCAGGAGGAAGGTGAGGACCTaGTTGCGGACGATGCCTCGGTCCTCCTCCTCCCTCAGCCGCTGC +
Preference number: 6 (lower is better)
Translates to: CSRSCFSRGRRKVRT*LRTMPRSSSSLSRC
Trigger: GCAGCGGCTGAGGGAGGAGGAGGACCGAGGCATCGTCCGCAACAAGGTCCTCACCTTCCTCCTGCCCCGGGAGAAGCAGCTTCGTGAACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037268.6
CDS CCA 72 bp TCCGCCTGGCTCTTCCTGATGGCTCGCAGCGGGTTGTaGCTCCTGACCAACATGTTCTCCAACCGCTGGCAG +
Preference number: 6 (lower is better)
Translates to: SAWLFLMARSGL*LLTNMFSNRWQ
Trigger: CTGCCAGCGGTTGGAGAACATGTTGGTCAGGAGCCACAACCCGCTGCGAGCCATCAGGAAGAGCCAGGCGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037268.6
CDS CAA 72 bp CAGTCCGCCTGGCTCTTCCTGATGGCTCGCAGCGGGTaGTGGCTCCTGACCAACATGTTCTCCAACCGCTGG +
Preference number: 6 (lower is better)
Translates to: QSAWLFLMARSG*WLLTNMFSNRW
Trigger: CCAGCGGTTGGAGAACATGTTGGTCAGGAGCCACAACCCGCTGCGAGCCATCAGGAAGAGCCAGGCGGACTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037268.6
CDS GCA 72 bp AAGTCCTCCAACTCCCTTTGTACCCCGGCCACCTTCTaGTGTAGGATCTCCAAGTCGGCCGGCAGAGGGAGG +
Preference number: 6 (lower is better)
Translates to: KSSNSLCTPATF*CRISKSAGRGR
Trigger: CCTCCCTCTGCCGGCCGACTTGGAGATCCTACAGCAGAAGGTGGCCGGGGTACAAAGGGAGTTGGAGGACTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037268.6
CDS TCA 72 bp CCTCCAAGTAACGGATGGCCTTCAGTGCCTCCTCCTTaGAGTCCTCCAACTCCCTTTGTACCCCGGCCACCT +
Preference number: 6 (lower is better)
Translates to: PPSNGWPSVPPP*SPPTPFVPRPP
Trigger: AGGTGGCCGGGGTACAAAGGGAGTTGGAGGACTTCAAGGAGGAGGCACTGAAGGCCATCCGTTACTTGGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037268.6
CDS GCA 72 bp GCAGAAGGCGTCCTCCAAGTAACGGATGGCCTTCAGTaGCTCCTCCTTGAAGTCCTCCAACTCCCTTTGTAC +
Preference number: 6 (lower is better)
Translates to: AEGVLQVTDGLQ*LLLEVLQLPLY
Trigger: GTACAAAGGGAGTTGGAGGACTTCAAGGAGGAGGCACTGAAGGCCATCCGTTACTTGGAGGACGCCTTCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037268.6
CDS CAA 72 bp AGGTCCCCAGACTGGAGCCCGCTTTCCACCATCTTCTaGCCCTGTAAGGTATTCACCTTCATAAGAATGGAC +
Preference number: 6 (lower is better)
Translates to: RSPDWSPLSTIF*PCKVFTFIRMD
Trigger: GTCCATTCTTATGAAGGTGAATACCTTACAGGGCAAGAAGATGGTGGAAAGCGGGCTCCAGTCTGGGGACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037268.6