Pregenerated sensors for CCDC181 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026578Ensembl transcript IDs: ENSMUST00000027867.7
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AATCCTACTCCCACAATCTGTAGTGACGCCGAGACATGGGGCCCCTaGGGAACAACACACAACATCCTGGTGCCAGCGGCTTCACATGTA | + |
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Preference number: 1 (lower is better) Translates to: NPTPTICSDAETWGP*GTTHNILVPAASHV Trigger: TACATGTGAAGCCGCTGGCACCAGGATGTTGTGTGTTGTTCCCCAGGGGCCCCATGTCTCGGCGTCACTACAGATTGTGGGAGTAGGATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| 3UTR-3UTR CCA 90 bp | GTGCGAAAACAACATAAATCCAGCATCACCAAAAGGCAAATCCTACTCCCACAACAACACACAACATCCTaGTGCCAGCGGCTTCACATG | + |
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Preference number: 2 (lower is better) Translates to: VRKQHKSSITKRQILLPQQHTTS*CQRLHM Trigger: CATGTGAAGCCGCTGGCACCAGGATGTTGTGTGTTG...TTGTGGGAGTAGGATTTGCCTTTTGGTGATGCTGGATTTATGTTGTTTTCGCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| 3UTR CCA 72 bp | CCCACAATCTGTAGTGACGCCGAGACATGGGGCCCCTaGGGAACAACACACAACATCCTGGTGCCAGCGGCT | + |
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Preference number: 3 (lower is better) Translates to: PTICSDAETWGP*GTTHNILVPAA Trigger: AGCCGCTGGCACCAGGATGTTGTGTGTTGTTCCCCAGGGGCCCCATGTCTCGGCGTCACTACAGATTGTGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| 3UTR CCA 72 bp | AATCCTACTCCCACAATCTGTAGTGACGCCGAGACATaGGGCCCCTGGGGAACAACACACAACATCCTGGTG | + |
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Preference number: 3 (lower is better) Translates to: NPTPTICSDAET*GPWGTTHNILV Trigger: CACCAGGATGTTGTGTGTTGTTCCCCAGGGGCCCCATGTCTCGGCGTCACTACAGATTGTGGGAGTAGGATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS-3UTR TCA 90 bp | TGGGGAACAACACACAACATCCTGGTGCCAGCGGCTTCACATGTAGTCTTTCCCGCCTGGCTCTCTCTTTaGCAGCCTGCTGCTCGGCTA | + |
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Preference number: 4 (lower is better) Translates to: WGTTHNILVPAASHVVFPAWLSL*QPAARL Trigger: TAGCCGAGCAGCAGGCTGTCAAAGAGAGAGCCAGGC...GGGAAAGACTACATGTGAAGCCGCTGGCACCAGGATGTTGTGTGTTGTTCCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS-3UTR TCA 90 bp | AACAACACACAACATCCTGGTGCCAGCGGCTTCACATGTAGTCTTTCCCGGGTGCAGACTCTTCTTTCTTaGTCCCACCAACAGACGGGT | + |
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Preference number: 4 (lower is better) Translates to: NNTQHPGASGFTCSLSRVQTLLS*SHQQTG Trigger: ACCCGTCTGTTGGTGGGATCAAGAAAGAAGAGTCTG...CACCCGGGAAAGACTACATGTGAAGCCGCTGGCACCAGGATGTTGTGTGTTGTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS-3UTR TCA 90 bp | AACAACACACAACATCCTGGTGCCAGCGGCTTCACATGTAGTCTTTCCCGGGTGATGGGATCCAACGGCTaGATACTTGGGACAGAAATG | + |
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Preference number: 4 (lower is better) Translates to: NNTQHPGASGFTCSLSRVMGSNG*ILGTEM Trigger: CATTTCTGTCCCAAGTATTCAGCCGTTGGATCCCAT...CACCCGGGAAAGACTACATGTGAAGCCGCTGGCACCAGGATGTTGTGTGTTGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS-3UTR TCA 90 bp | ATCCAGCATCACCAAAAGGCAAATCCTACTCCCACAATCTGTAGTGACGCCGAGATCTGCTTTGCCCGCTaGACTCTCCGCATTTCTATG | + |
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Preference number: 4 (lower is better) Translates to: IQHHQKANPTPTICSDAEICFAR*TLRISM Trigger: CATAGAAATGCGGAGAGTTCAGCGGGCAAAGCAGAT...CTCGGCGTCACTACAGATTGTGGGAGTAGGATTTGCCTTTTGGTGATGCTGGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS-3UTR GCA 90 bp | ATCCAGCATCACCAAAAGGCAAATCCTACTCCCACAATCTGTAGTGACGCCGAGTCTCTTCCTCCAGTTTaGGCTGTTCTTCCTCCCTCT | + |
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Preference number: 4 (lower is better) Translates to: IQHHQKANPTPTICSDAESLPPV*AVLPPS Trigger: AGAGGGAGGAAGAACAGCGCAAACTGGAGGAAGAGA...CTCGGCGTCACTACAGATTGTGGGAGTAGGATTTGCCTTTTGGTGATGCTGGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS-3UTR GCA 90 bp | AACAACACACAACATCCTGGTGCCAGCGGCTTCACATGTAGTCTTTCCCGGGTGCTCTGTTCACTTGTCTaGTGCTCATGTCTTCGATCT | + |
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Preference number: 4 (lower is better) Translates to: NNTQHPGASGFTCSLSRVLCSLV*CSCLRS Trigger: AGATCGAAGACATGAGCAGCAGACAAGTGAACAGAG...CACCCGGGAAAGACTACATGTGAAGCCGCTGGCACCAGGATGTTGTGTGTTGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS-3UTR TCA 90 bp | AACAACACACAACATCCTGGTGCCAGCGGCTTCACATGTAGTCTTTCCCGGGTGTACTTGGGACAGAAATaGAATCATTCCTTCTGGGCA | + |
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Preference number: 4 (lower is better) Translates to: NNTQHPGASGFTCSLSRVYLGQK*NHSFWA Trigger: TGCCCAGAAGGAATGATTTCATTTCTGTCCCAAGTA...CACCCGGGAAAGACTACATGTGAAGCCGCTGGCACCAGGATGTTGTGTGTTGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS-3UTR TCA 90 bp | AGCATCACCAAAAGGCAAATCCTACTCCCACAATCTGTAGTGACGCCGAGACATTGGAGAGACTCCTGCTaGCTGTATCCTGTGATTGGA | + |
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Preference number: 4 (lower is better) Translates to: SITKRQILLPQSVVTPRHWRDSC*LYPVIG Trigger: TCCAATCACAGGATACAGTCAGCAGGAGTCTCTCCA...ATGTCTCGGCGTCACTACAGATTGTGGGAGTAGGATTTGCCTTTTGGTGATGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS-3UTR CCA 90 bp | CAGCATCACCAAAAGGCAAATCCTACTCCCACAATCTGTAGTGACGCCGAGACACGTTCCAGCTGTTTTTaGAGTTCCTTCTGTCGTGGT | + |
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Preference number: 4 (lower is better) Translates to: QHHQKANPTPTICSDAETRSSCF*SSFCRG Trigger: ACCACGACAGAAGGAACTCCAAAAACAGCTGGAACG...TGTCTCGGCGTCACTACAGATTGTGGGAGTAGGATTTGCCTTTTGGTGATGCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS-3UTR GCA 90 bp | AACAACACACAACATCCTGGTGCCAGCGGCTTCACATGTAGTCTTTCCCGGGTGCAAGACATGACCCTTTaGTTCAGACTCTTCTTTCTT | + |
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Preference number: 4 (lower is better) Translates to: NNTQHPGASGFTCSLSRVQDMTL*FRLFFL Trigger: AAGAAAGAAGAGTCTGAAGCAAAGGGTCATGTCTTG...CACCCGGGAAAGACTACATGTGAAGCCGCTGGCACCAGGATGTTGTGTGTTGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS-3UTR CCA 90 bp | GTGCGAAAACAACATAAATCCAGCATCACCAAAAGGCAAATCCTACTCCCACAAGACGATTCTTGGGGTTaGGGAGTAGCTGAGGGACCT | + |
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Preference number: 4 (lower is better) Translates to: VRKQHKSSITKRQILLPQDDSWG*GVAEGP Trigger: AGGTCCCTCAGCTACTCCCCAACCCCAAGAATCGTC...TTGTGGGAGTAGGATTTGCCTTTTGGTGATGCTGGATTTATGTTGTTTTCGCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS-3UTR GCA 90 bp | TGGGGAACAACACACAACATCCTGGTGCCAGCGGCTTCACATGTAGTCTTTCCCTTCATCTGCTCCTCATaGTTTTTCTTAAGCCATAAC | + |
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Preference number: 4 (lower is better) Translates to: WGTTHNILVPAASHVVFPFICSS*FFLSHN Trigger: GTTATGGCTTAAGAAAAAGCATGAGGAGCAGATGAA...GGGAAAGACTACATGTGAAGCCGCTGGCACCAGGATGTTGTGTGTTGTTCCCCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS-3UTR TCA 90 bp | GTGCGAAAACAACATAAATCCAGCATCACCAAAAGGCAAATCCTACTCCCACAAGCTGACTGTATCCTGTaGTTGGACCTCCTGGCTTTT | + |
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Preference number: 4 (lower is better) Translates to: VRKQHKSSITKRQILLPQADCIL*LDLLAF Trigger: AAAAGCCAGGAGGTCCAATCACAGGATACAGTCAGC...TTGTGGGAGTAGGATTTGCCTTTTGGTGATGCTGGATTTATGTTGTTTTCGCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS-3UTR CCA 90 bp | GTGCGAAAACAACATAAATCCAGCATCACCAAAAGGCAAATCCTACTCCCACAACCGAAAAGCTTGCTGTaGGTCTCTGTTCACTTGTCT | + |
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Preference number: 4 (lower is better) Translates to: VRKQHKSSITKRQILLPQPKSLL*VSVHLS Trigger: AGACAAGTGAACAGAGACCCACAGCAAGCTTTTCGG...TTGTGGGAGTAGGATTTGCCTTTTGGTGATGCTGGATTTATGTTGTTTTCGCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS-3UTR CCA 90 bp | TTTGTGCGAAAACAACATAAATCCAGCATCACCAAAAGGCAAATCCTACTCCCATCCTCCAGGTCTTTCTaGTTTTCTGGTTTGGAATCC | + |
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Preference number: 4 (lower is better) Translates to: FVRKQHKSSITKRQILLPSSRSF*FSGLES Trigger: GGATTCCAAACCAGAAAACCAGAAAGACCTGGAGGA...TGGGAGTAGGATTTGCCTTTTGGTGATGCTGGATTTATGTTGTTTTCGCACAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS-3UTR TCA 90 bp | TTTGTGCGAAAACAACATAAATCCAGCATCACCAAAAGGCAAATCCTACTCCCACAACCAATTTGTCTTTaGACTTCAGTTTTCGCTCCC | + |
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Preference number: 4 (lower is better) Translates to: FVRKQHKSSITKRQILLPQPICL*TSVFAP Trigger: GGGAGCGAAAACTGAAGTTCAAAGACAAATTGGTTG...TGGGAGTAGGATTTGCCTTTTGGTGATGCTGGATTTATGTTGTTTTCGCACAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS-3UTR CCA 90 bp | TTTGTGCGAAAACAACATAAATCCAGCATCACCAAAAGGCAAATCCTACTCCCATCTGGTTTTCTGGTTTaGAATCCTGGAAGGAGTTCT | + |
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Preference number: 4 (lower is better) Translates to: FVRKQHKSSITKRQILLPSGFLV*NPGRSS Trigger: AGAACTCCTTCCAGGATTCCAAACCAGAAAACCAGA...TGGGAGTAGGATTTGCCTTTTGGTGATGCTGGATTTATGTTGTTTTCGCACAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS-3UTR CCA 90 bp | GTGCGAAAACAACATAAATCCAGCATCACCAAAAGGCAAATCCTACTCCCACAAGTTTCCCAGACATATTaGTCTCGTTTTCTAAGAGAG | + |
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Preference number: 4 (lower is better) Translates to: VRKQHKSSITKRQILLPQVSQTY*SRFLRE Trigger: CTCTCTTAGAAAACGAGACCAATATGTCTGGGAAAC...TTGTGGGAGTAGGATTTGCCTTTTGGTGATGCTGGATTTATGTTGTTTTCGCAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS GCA 90 bp | AGGCTGCTCTGTAGCTGTTTGGAGCGGCGGGCTTCGAGCCGGAGCTaGCTGGCTCTCTCTTTGACAGCCTGCTGCTCGGCTATCTTCTCG | + |
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Preference number: 5 (lower is better) Translates to: RLLCSCLERRASSRS*LALSLTACCSAIFS Trigger: CGAGAAGATAGCCGAGCAGCAGGCTGTCAAAGAGAGAGCCAGGCAGCTCCGGCTCGAAGCCCGCCGCTCCAAACAGCTACAGAGCAGCCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS GCA 90 bp | CGGGCTTCGAGCCGGAGCTGCCTGGCTCTCTCTTTGACAGCCTGCTaGTCGGCTATCTTCTCGATCTGTTTCCTTCTGAGCCATTGTCGA | + |
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Preference number: 5 (lower is better) Translates to: RASSRSCLALSLTAC*SAIFSICFLLSHCR Trigger: TCGACAATGGCTCAGAAGGAAACAGATCGAGAAGATAGCCGAGCAGCAGGCTGTCAAAGAGAGAGCCAGGCAGCTCCGGCTCGAAGCCCG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS-3UTR CAA 90 bp | AACAACACACAACATCCTGGTGCCAGCGGCTTCACATGTAGTCTTTCCCGGGTGTGGATCAGAGAGCTGTaGGCCAAGTTCTGTTTCTGT | + |
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Preference number: 5 (lower is better) Translates to: NNTQHPGASGFTCSLSRVWIREL*AKFCFC Trigger: ACAGAAACAGAACTTGGCCAACAGCTCTCTGATCCA...CACCCGGGAAAGACTACATGTGAAGCCGCTGGCACCAGGATGTTGTGTGTTGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS-3UTR CAA 90 bp | CAGCATCACCAAAAGGCAAATCCTACTCCCACAATCTGTAGTGACGCCGAGACAGCAAGGCCTCATCCTTaGGAGAGTTATCTGGATCAG | + |
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Preference number: 5 (lower is better) Translates to: QHHQKANPTPTICSDAETARPHP*ESYLDQ Trigger: CTGATCCAGATAACTCTCCAAAGGATGAGGCCTTGC...TGTCTCGGCGTCACTACAGATTGTGGGAGTAGGATTTGCCTTTTGGTGATGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS-3UTR CAA 90 bp | TGGGGAACAACACACAACATCCTGGTGCCAGCGGCTTCACATGTAGTCTTTCCCTTCTGGTTTTCTGGTTaGGAATCCTGGAAGGAGTTC | + |
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Preference number: 5 (lower is better) Translates to: WGTTHNILVPAASHVVFPFWFSG*ESWKEF Trigger: GAACTCCTTCCAGGATTCCAAACCAGAAAACCAGAA...GGGAAAGACTACATGTGAAGCCGCTGGCACCAGGATGTTGTGTGTTGTTCCCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS-3UTR CAA 90 bp | GTGCGAAAACAACATAAATCCAGCATCACCAAAAGGCAAATCCTACTCCCACAATGCCTGGCTCTCTCTTaGACAGCCTGCTGCTCGGCT | + |
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Preference number: 5 (lower is better) Translates to: VRKQHKSSITKRQILLPQCLALS*TACCSA Trigger: AGCCGAGCAGCAGGCTGTCAAAGAGAGAGCCAGGCA...TTGTGGGAGTAGGATTTGCCTTTTGGTGATGCTGGATTTATGTTGTTTTCGCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS-3UTR CAA 90 bp | GTGCGAAAACAACATAAATCCAGCATCACCAAAAGGCAAATCCTACTCCCACAAGGTTGGCAGCAGAGCTaGGACGATTCTTGGGGTTGG | + |
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Preference number: 5 (lower is better) Translates to: VRKQHKSSITKRQILLPQGWQQS*DDSWGW Trigger: CCAACCCCAAGAATCGTCCAAGCTCTGCTGCCAACC...TTGTGGGAGTAGGATTTGCCTTTTGGTGATGCTGGATTTATGTTGTTTTCGCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS-3UTR CAA 90 bp | ATCCAGCATCACCAAAAGGCAAATCCTACTCCCACAATCTGTAGTGACGCCGAGTGTTCTTCCTCCCTCTaGAGCTTTTCACGCTTTCGT | + |
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Preference number: 5 (lower is better) Translates to: IQHHQKANPTPTICSDAECSSSL*SFSRFR Trigger: ACGAAAGCGTGAAAAGCTCAAGAGGGAGGAAGAACA...CTCGGCGTCACTACAGATTGTGGGAGTAGGATTTGCCTTTTGGTGATGCTGGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS-3UTR CAA 90 bp | AACAACACACAACATCCTGGTGCCAGCGGCTTCACATGTAGTCTTTCCCGGGTGTCAACCAATTTGTCTTaGAACTTCAGTTTTCGCTCC | + |
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Preference number: 5 (lower is better) Translates to: NNTQHPGASGFTCSLSRVSTNLS*NFSFRS Trigger: GGAGCGAAAACTGAAGTTCAAAGACAAATTGGTTGA...CACCCGGGAAAGACTACATGTGAAGCCGCTGGCACCAGGATGTTGTGTGTTGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS-3UTR CAA 90 bp | CAGCATCACCAAAAGGCAAATCCTACTCCCACAATCTGTAGTGACGCCGAGACAAGATCATCTTCCTTCTaGCAAGCCATCTCTATTGTG | + |
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Preference number: 5 (lower is better) Translates to: QHHQKANPTPTICSDAETRSSSF*QAISIV Trigger: CACAATAGAGATGGCTTGCAAGAAGGAAGATGATCT...TGTCTCGGCGTCACTACAGATTGTGGGAGTAGGATTTGCCTTTTGGTGATGCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS-3UTR CAA 90 bp | AGCATCACCAAAAGGCAAATCCTACTCCCACAATCTGTAGTGACGCCGAGACATGCAAGACATGACCCTTaGCTTCAGACTCTTCTTTCT | + |
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Preference number: 5 (lower is better) Translates to: SITKRQILLPQSVVTPRHARHDP*LQTLLS Trigger: AGAAAGAAGAGTCTGAAGCAAAGGGTCATGTCTTGC...ATGTCTCGGCGTCACTACAGATTGTGGGAGTAGGATTTGCCTTTTGGTGATGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS GCA 90 bp | TTCATCTGCTCCTCATGCTTTTTCTTAAGCCATAACCGAAAAGCTTaGTGTGGGTCTCTGTTCACTTGTCTGCTGCTCATGTCTTCGATC | + |
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Preference number: 5 (lower is better) Translates to: FICSSCFFLSHNRKA*CGSLFTCLLLMSSI Trigger: GATCGAAGACATGAGCAGCAGACAAGTGAACAGAGACCCACAGCAAGCTTTTCGGTTATGGCTTAAGAAAAAGCATGAGGAGCAGATGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS-3UTR CAA 90 bp | GTGCGAAAACAACATAAATCCAGCATCACCAAAAGGCAAATCCTACTCCCACAATGGGTCTCTGTTCACTaGTCTGCTGCTCATGTCTTC | + |
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Preference number: 5 (lower is better) Translates to: VRKQHKSSITKRQILLPQWVSVH*SAAHVF Trigger: GAAGACATGAGCAGCAGACAAGTGAACAGAGACCCA...TTGTGGGAGTAGGATTTGCCTTTTGGTGATGCTGGATTTATGTTGTTTTCGCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS GCA 72 bp | TGTAGCTGTTTGGAGCGGCGGGCTTCGAGCCGGAGCTaGCTGGCTCTCTCTTTGACAGCCTGCTGCTCGGCT | + |
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Preference number: 6 (lower is better) Translates to: CSCLERRASSRS*LALSLTACCSA Trigger: AGCCGAGCAGCAGGCTGTCAAAGAGAGAGCCAGGCAGCTCCGGCTCGAAGCCCGCCGCTCCAAACAGCTACA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS CCA 72 bp | CTTCGGGTATGCTGTACAGGCTGCTCTGTAGCTGTTTaGAGCGGCGGGCTTCGAGCCGGAGCTGCCTGGCTC | + |
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Preference number: 6 (lower is better) Translates to: LRVCCTGCSVAV*SGGLRAGAAWL Trigger: GAGCCAGGCAGCTCCGGCTCGAAGCCCGCCGCTCCAAACAGCTACAGAGCAGCCTGTACAGCATACCCGAAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS CAA 72 bp | CGGCGGGCTTCGAGCCGGAGCTGCCTGGCTCTCTCTTaGACAGCCTGCTGCTCGGCTATCTTCTCGATCTGT | + |
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Preference number: 6 (lower is better) Translates to: RRASSRSCLALS*TACCSAIFSIC Trigger: ACAGATCGAGAAGATAGCCGAGCAGCAGGCTGTCAAAGAGAGAGCCAGGCAGCTCCGGCTCGAAGCCCGCCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS TCA 72 bp | GGCGGGCTTCGAGCCGGAGCTGCCTGGCTCTCTCTTTaGCAGCCTGCTGCTCGGCTATCTTCTCGATCTGTT | + |
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Preference number: 6 (lower is better) Translates to: GGLRAGAAWLSL*QPAARLSSRSV Trigger: AACAGATCGAGAAGATAGCCGAGCAGCAGGCTGTCAAAGAGAGAGCCAGGCAGCTCCGGCTCGAAGCCCGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS CAA 90 bp | AAAGCCTTGGCTTCGGGTATGCTGTACAGGCTGCTCTGTAGCTGTTaGGAGCGGCGGGCTTCGAGCCGGAGCTGCCTGGCTCTCTCTTTG | + |
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Preference number: 6 (lower is better) Translates to: KALASGMLYRLLCSC*ERRASSRSCLALSL Trigger: CAAAGAGAGAGCCAGGCAGCTCCGGCTCGAAGCCCGCCGCTCCAAACAGCTACAGAGCAGCCTGTACAGCATACCCGAAGCCAAGGCTTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS CAA 90 bp | TGTTTGGAGCGGCGGGCTTCGAGCCGGAGCTGCCTGGCTCTCTCTTaGACAGCCTGCTGCTCGGCTATCTTCTCGATCTGTTTCCTTCTG | + |
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Preference number: 6 (lower is better) Translates to: CLERRASSRSCLALS*TACCSAIFSICFLL Trigger: CAGAAGGAAACAGATCGAGAAGATAGCCGAGCAGCAGGCTGTCAAAGAGAGAGCCAGGCAGCTCCGGCTCGAAGCCCGCCGCTCCAAACA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS GCA 72 bp | AGCCGGAGCTGCCTGGCTCTCTCTTTGACAGCCTGCTaGTCGGCTATCTTCTCGATCTGTTTCCTTCTGAGC | + |
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Preference number: 6 (lower is better) Translates to: SRSCLALSLTAC*SAIFSICFLLS Trigger: GCTCAGAAGGAAACAGATCGAGAAGATAGCCGAGCAGCAGGCTGTCAAAGAGAGAGCCAGGCAGCTCCGGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS GCA 72 bp | TCGAGCCGGAGCTGCCTGGCTCTCTCTTTGACAGCCTaGTGCTCGGCTATCTTCTCGATCTGTTTCCTTCTG | + |
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Preference number: 6 (lower is better) Translates to: SSRSCLALSLTA*CSAIFSICFLL Trigger: CAGAAGGAAACAGATCGAGAAGATAGCCGAGCAGCAGGCTGTCAAAGAGAGAGCCAGGCAGCTCCGGCTCGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS CCA 72 bp | CCACCAACAGACGGGTTGGGAGCCCTGAGCGGCAACTaGGAGGATTCATGTTCCACACTATTAGCGCTGCTA | + |
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Preference number: 6 (lower is better) Translates to: PPTDGLGALSGN*EDSCSTLLALL Trigger: TAGCAGCGCTAATAGTGTGGAACATGAATCCTCCCAGTTGCCGCTCAGGGCTCCCAACCCGTCTGTTGGTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS CAA 72 bp | CTCGGCTATCTTCTCGATCTGTTTCCTTCTGAGCCATaGTCGAAAGGCTCTCTCGCGGCCCTCTGTTCCCCT | + |
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Preference number: 6 (lower is better) Translates to: LGYLLDLFPSEP*SKGSLAALCSP Trigger: AGGGGAACAGAGGGCCGCGAGAGAGCCTTTCGACAATGGCTCAGAAGGAAACAGATCGAGAAGATAGCCGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS GCA 72 bp | GAAAAGCTTGCTGTGGGTCTCTGTTCACTTGTCTGCTaGTCATGTCTTCGATCTGCTTTGCCCGCTGAACTC | + |
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Preference number: 6 (lower is better) Translates to: EKLAVGLCSLVC*SCLRSALPAEL Trigger: GAGTTCAGCGGGCAAAGCAGATCGAAGACATGAGCAGCAGACAAGTGAACAGAGACCCACAGCAAGCTTTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS TCA 72 bp | GCCAATGGCTCTCCTGCTGGAGAGATAGGCAAGACATaGCCCTTTGCTTCAGACTCTTCTTTCTTGATCCCA | + |
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Preference number: 6 (lower is better) Translates to: ANGSPAGEIGKT*PFASDSSFLIP Trigger: TGGGATCAAGAAAGAAGAGTCTGAAGCAAAGGGTCATGTCTTGCCTATCTCTCCAGCAGGAGAGCCATTGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS CCA 72 bp | CCTTCTGGGCAAGGCCTCATCCTTTGGAGAGTTATCTaGATCAGAGAGCTGTTGGCCAAGTTCTGTTTCTGT | + |
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Preference number: 6 (lower is better) Translates to: PSGQGLILWRVI*IRELLAKFCFC Trigger: ACAGAAACAGAACTTGGCCAACAGCTCTCTGATCCAGATAACTCTCCAAAGGATGAGGCCTTGCCCAGAAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS TCA 72 bp | TCTCTTCCTCCAGTTTGCGCTGTTCTTCCTCCCTCTTaGGCTTTTCACGCTTTCGTTCCAGCTGTTTTTGGA | + |
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Preference number: 6 (lower is better) Translates to: SLPPVCAVLPPS*AFHAFVPAVFG Trigger: TCCAAAAACAGCTGGAACGAAAGCGTGAAAAGCTCAAGAGGGAGGAAGAACAGCGCAAACTGGAGGAAGAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS CCA 72 bp | CCTCTTCATCCTCCAGGTCTTTCTGGTTTTCTGGTTTaGAATCCTGGAAGGAGTTCTCACTGTCTGAGTCTG | + |
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Preference number: 6 (lower is better) Translates to: PLHPPGLSGFLV*NPGRSSHCLSL Trigger: CAGACTCAGACAGTGAGAACTCCTTCCAGGATTCCAAACCAGAAAACCAGAAAGACCTGGAGGATGAAGAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS CAA 72 bp | TTCTCTTCCTCCAGTTTGCGCTGTTCTTCCTCCCTCTaGAGCTTTTCACGCTTTCGTTCCAGCTGTTTTTGG | + |
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Preference number: 6 (lower is better) Translates to: FSSSSLRCSSSL*SFSRFRSSCFW Trigger: CCAAAAACAGCTGGAACGAAAGCGTGAAAAGCTCAAGAGGGAGGAAGAACAGCGCAAACTGGAGGAAGAGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS CCA 72 bp | AATGAAATCATTCCTTCTGGGCAAGGCCTCATCCTTTaGAGAGTTATCTGGATCAGAGAGCTGTTGGCCAAG | + |
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Preference number: 6 (lower is better) Translates to: NEIIPSGQGLIL*RVIWIRELLAK Trigger: CTTGGCCAACAGCTCTCTGATCCAGATAACTCTCCAAAGGATGAGGCCTTGCCCAGAAGGAATGATTTCATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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| CDS GCA 72 bp | TCCTCATGCTTTTTCTTAAGCCATAACCGAAAAGCTTaGTGTGGGTCTCTGTTCACTTGTCTGCTGCTCATG | + |
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Preference number: 6 (lower is better) Translates to: SSCFFLSHNRKA*CGSLFTCLLLM Trigger: CATGAGCAGCAGACAAGTGAACAGAGACCCACAGCAAGCTTTTCGGTTATGGCTTAAGAAAAAGCATGAGGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027867.7 |
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