Pregenerated sensors for CCDC18 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000056531Ensembl transcript IDs: ENSMUST00000047677.9, ENSMUST00000197718.5
Found 130 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGCCACTTTTTCTTTGTACAGCTGGAAGGCCTTACTCAGCTCTTCTaGATTATAGAGGGCTTCATTCCTTTGTCGCTCAGCTCTTTTTCC | + |
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Preference number: 1 (lower is better) Translates to: SHFFFVQLEGLTQLF*IIEGFIPLSLSSFS Trigger: GGAAAAAGAGCTGAGCGACAAAGGAATGAAGCCCTCTATAATGCAGAAGAGCTGAGTAAGGCCTTCCAGCTGTACAAAGAAAAAGTGGCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000197718.5 |
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| 3UTR-3UTR TCA 90 bp | ATATTTCTGCCATTGCCAATTGTCATTGCTTCTGTTAAGCTCACACTGGGTGTTGGTGAGATGGTTCCATaGGCACTGGCTCCTCTTCCA | + |
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Preference number: 2 (lower is better) Translates to: IFLPLPIVIASVKLTLGVGEMVP*ALAPLP Trigger: TGGAAGAGGAGCCAGTGCTCATGGAACCATCTCACC...AACACCCAGTGTGAGCTTAACAGAAGCAATGACAATTGGCAATGGCAGAAATAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| 3UTR-3UTR CCA 90 bp | ATATTTCTGCCATTGCCAATTGTCATTGCTTCTGTTAAGCTCACACTGGGTGTTTGGTTCCATGAGCACTaGCTCCTCTTCCAGAGGACC | + |
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Preference number: 2 (lower is better) Translates to: IFLPLPIVIASVKLTLGVWFHEH*LLFQRT Trigger: GGTCCTCTGGAAGAGGAGCCAGTGCTCATGGAACCA...AACACCCAGTGTGAGCTTAACAGAAGCAATGACAATTGGCAATGGCAGAAATAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| 3UTR CCA 72 bp | GTACTACTGACATGTGACTGGATAGGGCTGGTGAGATaGTTCCATGAGCACTGGCTCCTCTTCCAGAGGACC | + |
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Preference number: 3 (lower is better) Translates to: VLLTCDWIGLVR*FHEHWLLFQRT Trigger: GGTCCTCTGGAAGAGGAGCCAGTGCTCATGGAACCATCTCACCAGCCCTATCCAGTCACATGTCAGTAGTAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| 3UTR-3UTR CAA 90 bp | TTTTCAGCCACTTTTTCTTTGTACAGCTGGAAGGCCTTACTCAGCTCTTCTGCAGAGGGCTTCATTCCTTaGTCGCTCAGCTCTTTTTCC | + |
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Preference number: 3 (lower is better) Translates to: FSATFSLYSWKALLSSSAEGFIP*SLSSFS Trigger: GGAAAAAGAGCTGAGCGACAAAGGAATGAAGCCCTC...TGCAGAAGAGCTGAGTAAGGCCTTCCAGCTGTACAAAGAAAAAGTGGCTGAAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000197718.5 |
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| 3UTR GCA 72 bp | TTCTTTGTACAGCTGGAAGGCCTTACTCAGCTCTTCTaGATTATAGAGGGCTTCATTCCTTTGTCGCTCAGC | + |
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Preference number: 3 (lower is better) Translates to: FFVQLEGLTQLF*IIEGFIPLSLS Trigger: GCTGAGCGACAAAGGAATGAAGCCCTCTATAATGCAGAAGAGCTGAGTAAGGCCTTCCAGCTGTACAAAGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197718.5 |
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| 3UTR-3UTR CAA 90 bp | GAAGGCCTTACTCAGCTCTTCTGCATTATAGAGGGCTTCATTCCTTTGTCGCTCTTTATACACTCTTCTTaGGCCTCTTGTAAACTGTGC | + |
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Preference number: 3 (lower is better) Translates to: EGLTQLFCIIEGFIPLSLFIHSS*ASCKLC Trigger: GCACAGTTTACAAGAGGCCAAAGAAGAGTGTATAAA...GAGCGACAAAGGAATGAAGCCCTCTATAATGCAGAAGAGCTGAGTAAGGCCTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197718.5 |
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| CDS-3UTR TCA 90 bp | ACATGTGACTGGATAGGGCTGGTGAGATGGTTCCATGAGCACTGGCTCCTCTTCATCTGCTGCTGCTGCTaGAGAGTGTGCTGTAGGATG | + |
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Preference number: 4 (lower is better) Translates to: TCDWIGLVRWFHEHWLLFICCCC*RVCCRM Trigger: CATCCTACAGCACACTCTTCAGCAGCAGCAGCAGAT...GAAGAGGAGCCAGTGCTCATGGAACCATCTCACCAGCCCTATCCAGTCACATGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR GCA 90 bp | ACATGTGACTGGATAGGGCTGGTGAGATGGTTCCATGAGCACTGGCTCCTCTTCGGAATGTTGGCTGCCTaGTCTTGTGCAGACTCAAGC | + |
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Preference number: 4 (lower is better) Translates to: TCDWIGLVRWFHEHWLLFGMLAA*SCADSS Trigger: GCTTGAGTCTGCACAAGAGCAGGCAGCCAACATTCC...GAAGAGGAGCCAGTGCTCATGGAACCATCTCACCAGCCCTATCCAGTCACATGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR GCA 90 bp | GGGCTGGTGAGATGGTTCCATGAGCACTGGCTCCTCTTCCAGAGGACCTCTGTTATCTCAAGTTTGGCTTaGCTGGCAGTACCAGTTAGC | + |
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Preference number: 4 (lower is better) Translates to: GLVRWFHEHWLLFQRTSVISSLA*LAVPVS Trigger: GCTAACTGGTACTGCCAGGCAAGCCAAACTTGAGAT...AACAGAGGTCCTCTGGAAGAGGAGCCAGTGCTCATGGAACCATCTCACCAGCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR CCA 90 bp | ACATGTGACTGGATAGGGCTGGTGAGATGGTTCCATGAGCACTGGCTCCTCTTCATTTCCCTCTGTGCTTaGACTTCTTGGCGACGAGCC | + |
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Preference number: 4 (lower is better) Translates to: TCDWIGLVRWFHEHWLLFISLCA*TSWRRA Trigger: GGCTCGTCGCCAAGAAGTCCAAGCACAGAGGGAAAT...GAAGAGGAGCCAGTGCTCATGGAACCATCTCACCAGCCCTATCCAGTCACATGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR TCA 90 bp | GGGCTGGTGAGATGGTTCCATGAGCACTGGCTCCTCTTCCAGAGGACCTCTGTTTCCAAATGTGTAACCTaGGCTGCTCTTTGCTTTAGC | + |
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Preference number: 4 (lower is better) Translates to: GLVRWFHEHWLLFQRTSVSKCVT*AALCFS Trigger: GCTAAAGCAAAGAGCAGCTCAGGTTACACATTTGGA...AACAGAGGTCCTCTGGAAGAGGAGCCAGTGCTCATGGAACCATCTCACCAGCCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR GCA 90 bp | ACATGTGACTGGATAGGGCTGGTGAGATGGTTCCATGAGCACTGGCTCCTCTTCGGCTGCCTGCTCTTGTaGAGACTCAAGCATAGCAAT | + |
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Preference number: 4 (lower is better) Translates to: TCDWIGLVRWFHEHWLLFGCLLL*RLKHSN Trigger: ATTGCTATGCTTGAGTCTGCACAAGAGCAGGCAGCC...GAAGAGGAGCCAGTGCTCATGGAACCATCTCACCAGCCCTATCCAGTCACATGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR GCA 90 bp | ACATGTGACTGGATAGGGCTGGTGAGATGGTTCCATGAGCACTGGCTCCTCTTCCCGGTAGCAAGTCGCTaGTTCTCTCTTTCATACTGC | + |
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Preference number: 4 (lower is better) Translates to: TCDWIGLVRWFHEHWLLFPVASR*FSLSYC Trigger: GCAGTATGAAAGAGAGAAGCAGCGACTTGCTACCGG...GAAGAGGAGCCAGTGCTCATGGAACCATCTCACCAGCCCTATCCAGTCACATGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR CCA 90 bp | GGGCTGGTGAGATGGTTCCATGAGCACTGGCTCCTCTTCCAGAGGACCTCTGTTTTCTGCATTTGCTCCTaGGTTAGCCTCAATTCTTGC | + |
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Preference number: 4 (lower is better) Translates to: GLVRWFHEHWLLFQRTSVFCICS*VSLNSC Trigger: GCAAGAATTGAGGCTAACCCAGGAGCAAATGCAGAA...AACAGAGGTCCTCTGGAAGAGGAGCCAGTGCTCATGGAACCATCTCACCAGCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR TCA 90 bp | GGGCTGGTGAGATGGTTCCATGAGCACTGGCTCCTCTTCCAGAGGACCTCTGTTCTCTCCTTAAGCGCCTaGTCCATTTCAATAAGTTCT | + |
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Preference number: 4 (lower is better) Translates to: GLVRWFHEHWLLFQRTSVLSLSA*SISISS Trigger: AGAACTTATTGAAATGGATCAGGCGCTTAAGGAGAG...AACAGAGGTCCTCTGGAAGAGGAGCCAGTGCTCATGGAACCATCTCACCAGCCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR CCA 90 bp | GGGCTGGTGAGATGGTTCCATGAGCACTGGCTCCTCTTCCAGAGGACCTCTGTTTTTTCTTTGTACAGCTaGAAGGCCTTACTCAGCTCT | + |
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Preference number: 4 (lower is better) Translates to: GLVRWFHEHWLLFQRTSVFSLYS*KALLSS Trigger: AGAGCTGAGTAAGGCCTTCCAGCTGTACAAAGAAAA...AACAGAGGTCCTCTGGAAGAGGAGCCAGTGCTCATGGAACCATCTCACCAGCCC 51% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR GCA 90 bp | GGGCTGGTGAGATGGTTCCATGAGCACTGGCTCCTCTTCCAGAGGACCTCTGTTAGAGCTTCCCGTTTCTaGATGGTTTCTGTTAATTCA | + |
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Preference number: 4 (lower is better) Translates to: GLVRWFHEHWLLFQRTSVRASRF*MVSVNS Trigger: TGAATTAACAGAAACCATGCAGAAACGGGAAGCTCT...AACAGAGGTCCTCTGGAAGAGGAGCCAGTGCTCATGGAACCATCTCACCAGCCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR CCA 90 bp | ACATGTGACTGGATAGGGCTGGTGAGATGGTTCCATGAGCACTGGCTCCTCTTCGAGTGTGCTGTAGGATaGCATTTTGTTCACTCGTCT | + |
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Preference number: 4 (lower is better) Translates to: TCDWIGLVRWFHEHWLLFECAVG*HFVHSS Trigger: AGACGAGTGAACAAAATGCCATCCTACAGCACACTC...GAAGAGGAGCCAGTGCTCATGGAACCATCTCACCAGCCCTATCCAGTCACATGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR TCA 90 bp | GGGCTGGTGAGATGGTTCCATGAGCACTGGCTCCTCTTCCAGAGGACCTCTGTTTGTTGCCTAAGTTTATaGAGTTTCTCTCGAAGGTTT | + |
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Preference number: 4 (lower is better) Translates to: GLVRWFHEHWLLFQRTSVCCLSL*SFSRRF Trigger: AAACCTTCGAGAGAAACTTCATAAACTTAGGCAACA...AACAGAGGTCCTCTGGAAGAGGAGCCAGTGCTCATGGAACCATCTCACCAGCCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR TCA 90 bp | ACATGTGACTGGATAGGGCTGGTGAGATGGTTCCATGAGCACTGGCTCCTCTTCTTGCTCACAGTATCCTaGGCTTCTTCCAATTCTTGT | + |
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Preference number: 4 (lower is better) Translates to: TCDWIGLVRWFHEHWLLFLLTVS*ASSNSC Trigger: ACAAGAATTGGAAGAAGCTCAGGATACTGTGAGCAA...GAAGAGGAGCCAGTGCTCATGGAACCATCTCACCAGCCCTATCCAGTCACATGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR CCA 90 bp | ACATGTGACTGGATAGGGCTGGTGAGATGGTTCCATGAGCACTGGCTCCTCTTCGCTCTCCATTTCTCATaGTCTCTTGCTGTAACATCT | + |
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Preference number: 4 (lower is better) Translates to: TCDWIGLVRWFHEHWLLFALHFS*SLAVTS Trigger: AGATGTTACAGCAAGAGACCATGAGAAATGGAGAGC...GAAGAGGAGCCAGTGCTCATGGAACCATCTCACCAGCCCTATCCAGTCACATGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR CCA 90 bp | GGGCTGGTGAGATGGTTCCATGAGCACTGGCTCCTCTTCCAGAGGACCTCTGTTCTCGAAGCTGTTCTTTaGCATTTTGCAACTTTTCAT | + |
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Preference number: 4 (lower is better) Translates to: GLVRWFHEHWLLFQRTSVLEAVL*HFATFH Trigger: ATGAAAAGTTGCAAAATGCCAAAGAACAGCTTCGAG...AACAGAGGTCCTCTGGAAGAGGAGCCAGTGCTCATGGAACCATCTCACCAGCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR TCA 90 bp | ACATGTGACTGGATAGGGCTGGTGAGATGGTTCCATGAGCACTGGCTCCTCTTCCTTTCCCTTTGTTTCTaGAGCTCTTGTTCTTGCTTT | + |
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Preference number: 4 (lower is better) Translates to: TCDWIGLVRWFHEHWLLFLSLCF*SSCSCF Trigger: AAAGCAAGAACAAGAGCTTCAGAAACAAAGGGAAAG...GAAGAGGAGCCAGTGCTCATGGAACCATCTCACCAGCCCTATCCAGTCACATGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR TCA 90 bp | CCTCTTCCAGAGGACCTCTGTTTGACTCTCAGCACTCACATGATGACTAGTAACTCCACCAGTTCTGAATaGGTGTTCTGCATTTGCTCC | + |
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Preference number: 4 (lower is better) Translates to: PLPEDLCLTLSTHMMTSNSTSSE*VFCICS Trigger: GGAGCAAATGCAGAACACTCATTCAGAACTGGTGGA...GTTACTAGTCATCATGTGAGTGCTGAGAGTCAAACAGAGGTCCTCTGGAAGAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR TCA 90 bp | CCTCTTCCAGAGGACCTCTGTTTGACTCTCAGCACTCACATGATGACTAGTAACAGCCTCCACCAGTTCTaGATGAGTGTTCTGCATTTG | + |
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Preference number: 4 (lower is better) Translates to: PLPEDLCLTLSTHMMTSNSLHQF*MSVLHL Trigger: CAAATGCAGAACACTCATTCAGAACTGGTGGAGGCT...GTTACTAGTCATCATGTGAGTGCTGAGAGTCAAACAGAGGTCCTCTGGAAGAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR GCA 90 bp | ACATGTGACTGGATAGGGCTGGTGAGATGGTTCCATGAGCACTGGCTCCTCTTCCTTACTCAGCTCTTCTaGATTATAGAGGGCTTCATT | + |
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Preference number: 4 (lower is better) Translates to: TCDWIGLVRWFHEHWLLFLTQLF*IIEGFI Trigger: AATGAAGCCCTCTATAATGCAGAAGAGCTGAGTAAG...GAAGAGGAGCCAGTGCTCATGGAACCATCTCACCAGCCCTATCCAGTCACATGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR CCA 90 bp | CCTCTTCCAGAGGACCTCTGTTTGACTCTCAGCACTCACATGATGACTAGTAACCTAAGATTGGAATGTTaGCTGCCTGCTCTTGTGCAG | + |
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Preference number: 4 (lower is better) Translates to: PLPEDLCLTLSTHMMTSNLRLEC*LPALVQ Trigger: CTGCACAAGAGCAGGCAGCCAACATTCCAATCTTAG...GTTACTAGTCATCATGTGAGTGCTGAGAGTCAAACAGAGGTCCTCTGGAAGAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR CCA 90 bp | GAAGGCCTTACTCAGCTCTTCTGCATTATAGAGGGCTTCATTCCTTTGTCGCTCCTAAGATTGGAATGTTaGCTGCCTGCTCTTGTGCAG | + |
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Preference number: 4 (lower is better) Translates to: EGLTQLFCIIEGFIPLSLLRLEC*LPALVQ Trigger: CTGCACAAGAGCAGGCAGCCAACATTCCAATCTTAG...GAGCGACAAAGGAATGAAGCCCTCTATAATGCAGAAGAGCTGAGTAAGGCCTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197718.5 |
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| CDS-3UTR CCA 90 bp | ACATGTGACTGGATAGGGCTGGTGAGATGGTTCCATGAGCACTGGCTCCTCTTCACTGAGAAAGCTGCATaGATTTATTTTCCCCATCTC | + |
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Preference number: 4 (lower is better) Translates to: TCDWIGLVRWFHEHWLLFTEKAA*IYFPHL Trigger: GAGATGGGGAAAATAAATCCATGCAGCTTTCTCAGT...GAAGAGGAGCCAGTGCTCATGGAACCATCTCACCAGCCCTATCCAGTCACATGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR TCA 90 bp | ACATGTGACTGGATAGGGCTGGTGAGATGGTTCCATGAGCACTGGCTCCTCTTCCTTTTCAATTCTCCATaGGCATTCTGTAGTTCGTTT | + |
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Preference number: 4 (lower is better) Translates to: TCDWIGLVRWFHEHWLLFLFNSP*AFCSSF Trigger: AAACGAACTACAGAATGCTCATGGAGAATTGAAAAG...GAAGAGGAGCCAGTGCTCATGGAACCATCTCACCAGCCCTATCCAGTCACATGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR TCA 90 bp | CCTCTTCCAGAGGACCTCTGTTTGACTCTCAGCACTCACATGATGACTAGTAACCATTACCATGACTTTTaGAACTCAGGTCACTGGCAC | + |
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Preference number: 4 (lower is better) Translates to: PLPEDLCLTLSTHMMTSNHYHDF*NSGHWH Trigger: GTGCCAGTGACCTGAGTTTCAAAAGTCATGGTAATG...GTTACTAGTCATCATGTGAGTGCTGAGAGTCAAACAGAGGTCCTCTGGAAGAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR GCA 90 bp | ACATGTGACTGGATAGGGCTGGTGAGATGGTTCCATGAGCACTGGCTCCTCTTCCAGATCTTGAAGGACTaGAGACATACTCAGAATTTT | + |
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Preference number: 4 (lower is better) Translates to: TCDWIGLVRWFHEHWLLFQILKD*RHTQNF Trigger: AAAATTCTGAGTATGTCTGCAGTCCTTCAAGATCTG...GAAGAGGAGCCAGTGCTCATGGAACCATCTCACCAGCCCTATCCAGTCACATGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR GCA 90 bp | CTTTGGCCTCTTGTAAACTGTGCTCCTTTTCAATCACCATTTTCTGACTCTGCTGGAATGTTGGCTGCCTaGTCTTGTGCAGACTCAAGC | + |
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Preference number: 4 (lower is better) Translates to: LWPLVNCAPFQSPFSDSAGMLAA*SCADSS Trigger: GCTTGAGTCTGCACAAGAGCAGGCAGCCAACATTCC...AGCAGAGTCAGAAAATGGTGATTGAAAAGGAGCACAGTTTACAAGAGGCCAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197718.5 |
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| CDS-3UTR TCA 90 bp | CCTCTTCCAGAGGACCTCTGTTTGACTCTCAGCACTCACATGATGACTAGTAACTCATTAGCAACATTTTaGGAGAGCTGGTTCACAGTC | + |
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Preference number: 4 (lower is better) Translates to: PLPEDLCLTLSTHMMTSNSLATF*ESWFTV Trigger: GACTGTGAACCAGCTCTCTCAAAATGTTGCTAATGA...GTTACTAGTCATCATGTGAGTGCTGAGAGTCAAACAGAGGTCCTCTGGAAGAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR TCA 90 bp | CCTCTTCCAGAGGACCTCTGTTTGACTCTCAGCACTCACATGATGACTAGTAACAGATCGTCATTACCATaGCTTTTGAAACTCAGGTCA | + |
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Preference number: 4 (lower is better) Translates to: PLPEDLCLTLSTHMMTSNRSSLP*LLKLRS Trigger: TGACCTGAGTTTCAAAAGTCATGGTAATGACGATCT...GTTACTAGTCATCATGTGAGTGCTGAGAGTCAAACAGAGGTCCTCTGGAAGAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR TCA 90 bp | CCTCTTCCAGAGGACCTCTGTTTGACTCTCAGCACTCACATGATGACTAGTAACATCCATAGAAACAGATaGAAAAGACACCTGATCTCT | + |
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Preference number: 4 (lower is better) Translates to: PLPEDLCLTLSTHMMTSNIHRNR*KRHLIS Trigger: AGAGATCAGGTGTCTTTTTCATCTGTTTCTATGGAT...GTTACTAGTCATCATGTGAGTGCTGAGAGTCAAACAGAGGTCCTCTGGAAGAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR TCA 90 bp | CCTCTTCCAGAGGACCTCTGTTTGACTCTCAGCACTCACATGATGACTAGTAACTCAATTCAGAAATCATaGGTTTATTTGCCTCACAGC | + |
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Preference number: 4 (lower is better) Translates to: PLPEDLCLTLSTHMMTSNSIQKS*VYLPHS Trigger: GCTGTGAGGCAAATAAACTCATGATTTCTGAATTGA...GTTACTAGTCATCATGTGAGTGCTGAGAGTCAAACAGAGGTCCTCTGGAAGAGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR TCA 90 bp | CCTCTTCCAGAGGACCTCTGTTTGACTCTCAGCACTCACATGATGACTAGTAACTCTGCATTTGAAAAGTaGTATCTGAGAATGTTTGGC | + |
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Preference number: 4 (lower is better) Translates to: PLPEDLCLTLSTHMMTSNSAFEK*YLRMFG Trigger: GCCAAACATTCTCAGATATCACTTTTCAAATGCAGA...GTTACTAGTCATCATGTGAGTGCTGAGAGTCAAACAGAGGTCCTCTGGAAGAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR GCA 90 bp | TGCCAATTGTCATTGCTTCTGTTAAGCTCACACTGGGTGTTTTCAACTTTCAAACCTCACAGCAGCCAATaGATTTGTCCTCCTTGTCAG | + |
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Preference number: 4 (lower is better) Translates to: CQLSLLLLSSHWVFSTFKPHSSQ*ICPPCQ Trigger: CTGACAAGGAGGACAAATGCATTGGCTGCTGTGAGG...TTTGAAAGTTGAAAACACCCAGTGTGAGCTTAACAGAAGCAATGACAATTGGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR GCA 90 bp | ATATTTCTGCCATTGCCAATTGTCATTGCTTCTGTTAAGCTCACACTGGGTGTTTTCTATTTCCCTCTGTaGTTGGACTTCTTGGCGACG | + |
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Preference number: 4 (lower is better) Translates to: IFLPLPIVIASVKLTLGVFYFPL*LDFLAT Trigger: CGTCGCCAAGAAGTCCAAGCACAGAGGGAAATAGAA...AACACCCAGTGTGAGCTTAACAGAAGCAATGACAATTGGCAATGGCAGAAATAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| 3UTR CAA 72 bp | ACTCAGCTCTTCTGCATTATAGAGGGCTTCATTCCTTaGTCGCTCAGCTCTTTTTCCTTGTTTACTCTGTTC | + |
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Preference number: 4 (lower is better) Translates to: TQLFCIIEGFIP*SLSSFSLFTLF Trigger: GAACAGAGTAAACAAGGAAAAAGAGCTGAGCGACAAAGGAATGAAGCCCTCTATAATGCAGAAGAGCTGAGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000197718.5 |
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| CDS-3UTR TCA 90 bp | GAGGGCTTCATTCCTTTGTCGCTCAGCTCTTTTTCCTTGTTTACTCTGTTCAAGTGTTGCCTAAGTTTATaGAGTTTCTCTCGAAGGTTT | + |
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Preference number: 4 (lower is better) Translates to: EGFIPLSLSSFSLFTLFKCCLSL*SFSRRF Trigger: AAACCTTCGAGAGAAACTTCATAAACTTAGGCAACA...CTTGAACAGAGTAAACAAGGAAAAAGAGCTGAGCGACAAAGGAATGAAGCCCTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000197718.5 |
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| CDS-3UTR TCA 90 bp | ATATTTCTGCCATTGCCAATTGTCATTGCTTCTGTTAAGCTCACACTGGGTGTTTCTCTTTTCTCCAGTTaGGTTTCGAGTTGCTCAATC | + |
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Preference number: 4 (lower is better) Translates to: IFLPLPIVIASVKLTLGVSLFSS*VSSCSI Trigger: GATTGAGCAACTCGAAACTCAACTGGAGAAAAGAGA...AACACCCAGTGTGAGCTTAACAGAAGCAATGACAATTGGCAATGGCAGAAATAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR GCA 90 bp | ATATTTCTGCCATTGCCAATTGTCATTGCTTCTGTTAAGCTCACACTGGGTGTTCTGACTAGTTCTGTGTaGCATGTTAACCTTCAAGTC | + |
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Preference number: 4 (lower is better) Translates to: IFLPLPIVIASVKLTLGVLTSSV*HVNLQV Trigger: GACTTGAAGGTTAACATGGCACACAGAACTAGTCAG...AACACCCAGTGTGAGCTTAACAGAAGCAATGACAATTGGCAATGGCAGAAATAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR GCA 90 bp | TGCCAATTGTCATTGCTTCTGTTAAGCTCACACTGGGTGTTTTCAACTTTCAAATTTCTCATGGTCTCTTaGTGTAACATCTGCTGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: CQLSLLLLSSHWVFSTFKFLMVS*CNICCC Trigger: GCAGCAGCAGATGTTACAGCAAGAGACCATGAGAAA...TTTGAAAGTTGAAAACACCCAGTGTGAGCTTAACAGAAGCAATGACAATTGGCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
||
| CDS-3UTR GCA 90 bp | TGCCAATTGTCATTGCTTCTGTTAAGCTCACACTGGGTGTTTTCAACTTTCAAAGTTAGCCTCAATTCTTaGCCCAAATCAATGACCTCC | + |
|
Preference number: 4 (lower is better) Translates to: CQLSLLLLSSHWVFSTFKVSLNS*PKSMTS Trigger: GGAGGTCATTGATTTGGGGCAAGAATTGAGGCTAAC...TTTGAAAGTTGAAAACACCCAGTGTGAGCTTAACAGAAGCAATGACAATTGGCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
||
| CDS-3UTR TCA 90 bp | CTTTGGCCTCTTGTAAACTGTGCTCCTTTTCAATCACCATTTTCTGACTCTGCTATCCATAGAAACAGATaGAAAAGACACCTGATCTCT | + |
|
Preference number: 4 (lower is better) Translates to: LWPLVNCAPFQSPFSDSAIHRNR*KRHLIS Trigger: AGAGATCAGGTGTCTTTTTCATCTGTTTCTATGGAT...AGCAGAGTCAGAAAATGGTGATTGAAAAGGAGCACAGTTTACAAGAGGCCAAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000197718.5 |
||
| CDS-3UTR TCA 90 bp | ATATTTCTGCCATTGCCAATTGTCATTGCTTCTGTTAAGCTCACACTGGGTGTTCCGTTAACTGTGACATaGCTTCTGAGTTTTTCATTG | + |
|
Preference number: 4 (lower is better) Translates to: IFLPLPIVIASVKLTLGVPLTVT*LLSFSL Trigger: CAATGAAAAACTCAGAAGTCATGTCACAGTTAACGG...AACACCCAGTGTGAGCTTAACAGAAGCAATGACAATTGGCAATGGCAGAAATAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
||
| CDS-3UTR TCA 90 bp | TGCCAATTGTCATTGCTTCTGTTAAGCTCACACTGGGTGTTTTCAACTTTCAAATTGTTCACAGTCTGCTaGTCTCCATCCTTTATACTT | + |
|
Preference number: 4 (lower is better) Translates to: CQLSLLLLSSHWVFSTFKLFTVC*SPSFIL Trigger: AAGTATAAAGGATGGAGATCAGCAGACTGTGAACAA...TTTGAAAGTTGAAAACACCCAGTGTGAGCTTAACAGAAGCAATGACAATTGGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
||
| CDS-3UTR TCA 90 bp | TGCCAATTGTCATTGCTTCTGTTAAGCTCACACTGGGTGTTTTCAACTTTCAAACATTTGCAGCTTCAATaGCTTCATTCCTGTCTTGAA | + |
|
Preference number: 4 (lower is better) Translates to: CQLSLLLLSSHWVFSTFKHLQLQ*LHSCLE Trigger: TTCAAGACAGGAATGAAGTCATTGAAGCTGCAAATG...TTTGAAAGTTGAAAACACCCAGTGTGAGCTTAACAGAAGCAATGACAATTGGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
||
| CDS-3UTR TCA 90 bp | TGCCAATTGTCATTGCTTCTGTTAAGCTCACACTGGGTGTTTTCAACTTTCAAATACAATTTTCCTCCCTaGCTTAAACCAGTAGCTGTT | + |
|
Preference number: 4 (lower is better) Translates to: CQLSLLLLSSHWVFSTFKYNFPP*LKPVAV Trigger: AACAGCTACTGGTTTAAGTCAGGGAGGAAAATTGTA...TTTGAAAGTTGAAAACACCCAGTGTGAGCTTAACAGAAGCAATGACAATTGGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
||
| CDS-3UTR GCA 90 bp | ATATTTCTGCCATTGCCAATTGTCATTGCTTCTGTTAAGCTCACACTGGGTGTTTTCAGCCTCTCTTATTaGAAGCTTAATCCTCAATTC | + |
|
Preference number: 4 (lower is better) Translates to: IFLPLPIVIASVKLTLGVFSLSY*KLNPQF Trigger: GAATTGAGGATTAAGCTTGCAATAAGAGAGGCTGAA...AACACCCAGTGTGAGCTTAACAGAAGCAATGACAATTGGCAATGGCAGAAATAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
||
| CDS-3UTR GCA 90 bp | TGCCAATTGTCATTGCTTCTGTTAAGCTCACACTGGGTGTTTTCAACTTTCAAACTTGTTGATGCAAATTaGTCACAGTATCCTGAGCTT | + |
|
Preference number: 4 (lower is better) Translates to: CQLSLLLLSSHWVFSTFKLVDAN*SQYPEL Trigger: AAGCTCAGGATACTGTGAGCAATTTGCATCAACAAG...TTTGAAAGTTGAAAACACCCAGTGTGAGCTTAACAGAAGCAATGACAATTGGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
||
| CDS-3UTR CCA 90 bp | ATATTTCTGCCATTGCCAATTGTCATTGCTTCTGTTAAGCTCACACTGGGTGTTCTTCCCGTTTCTGCATaGTTTCTGTTAATTCAGTTT | + |
|
Preference number: 4 (lower is better) Translates to: IFLPLPIVIASVKLTLGVLPVSA*FLLIQF Trigger: AAACTGAATTAACAGAAACCATGCAGAAACGGGAAG...AACACCCAGTGTGAGCTTAACAGAAGCAATGACAATTGGCAATGGCAGAAATAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
||
| CDS-3UTR CCA 90 bp | TGCCAATTGTCATTGCTTCTGTTAAGCTCACACTGGGTGTTTTCAACTTTCAAAGAGCTGGTAGATACTTaGTGTCTTCTGTCTTTTCAT | + |
|
Preference number: 4 (lower is better) Translates to: CQLSLLLLSSHWVFSTFKELVDT*CLLSFH Trigger: ATGAAAAGACAGAAGACACCAAGTATCTACCAGCTC...TTTGAAAGTTGAAAACACCCAGTGTGAGCTTAACAGAAGCAATGACAATTGGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
||
| CDS-3UTR GCA 90 bp | ATATTTCTGCCATTGCCAATTGTCATTGCTTCTGTTAAGCTCACACTGGGTGTTTCTTCCCCTAAATTGTaGAAACTCCATTCTGTTATT | + |
|
Preference number: 4 (lower is better) Translates to: IFLPLPIVIASVKLTLGVSSPKL*KLHSVI Trigger: AATAACAGAATGGAGTTTGCACAATTTAGGGGAAGA...AACACCCAGTGTGAGCTTAACAGAAGCAATGACAATTGGCAATGGCAGAAATAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
||
| CDS-3UTR CCA 90 bp | ATATTTCTGCCATTGCCAATTGTCATTGCTTCTGTTAAGCTCACACTGGGTGTTCATGTCCAGAAATTTTaGCTTGCAATCTGGTTAATT | + |
|
Preference number: 4 (lower is better) Translates to: IFLPLPIVIASVKLTLGVHVQKF*LAIWLI Trigger: AATTAACCAGATTGCAAGCCAAAATTTCTGGACATG...AACACCCAGTGTGAGCTTAACAGAAGCAATGACAATTGGCAATGGCAGAAATAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
||
| CDS-3UTR GCA 90 bp | ACCTTCAATTTTATACACTCTTCTTTGGCCTCTTGTAAACTGTGCTCCTTTTCACAGATCTTGAAGGACTaGAGACATACTCAGAATTTT | + |
|
Preference number: 4 (lower is better) Translates to: TFNFIHSSLASCKLCSFSQILKD*RHTQNF Trigger: AAAATTCTGAGTATGTCTGCAGTCCTTCAAGATCTG...TGAAAAGGAGCACAGTTTACAAGAGGCCAAAGAAGAGTGTATAAAATTGAAGGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197718.5 |
||
| CDS-3UTR GCA 90 bp | TGCCAATTGTCATTGCTTCTGTTAAGCTCACACTGGGTGTTTTCAACTTTCAAAGTTCACAGTCAGATTTaGATGAAGCTTTTGAATTTC | + |
|
Preference number: 4 (lower is better) Translates to: CQLSLLLLSSHWVFSTFKVHSQI*MKLLNF Trigger: GAAATTCAAAAGCTTCATGCAAATCTGACTGTGAAC...TTTGAAAGTTGAAAACACCCAGTGTGAGCTTAACAGAAGCAATGACAATTGGCA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
||
| CDS-3UTR GCA 90 bp | TGCCAATTGTCATTGCTTCTGTTAAGCTCACACTGGGTGTTTTCAACTTTCAAATTACACAGTATATCTTaGTGCAAAATGGACATAGTC | + |
|
Preference number: 4 (lower is better) Translates to: CQLSLLLLSSHWVFSTFKLHSIS*CKMDIV Trigger: GACTATGTCCATTTTGCAGCAAGATATACTGTGTAA...TTTGAAAGTTGAAAACACCCAGTGTGAGCTTAACAGAAGCAATGACAATTGGCA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
||
| CDS-3UTR GCA 90 bp | TTTATACACTCTTCTTTGGCCTCTTGTAAACTGTGCTCCTTTTCAATCACCATTTCTTCCCCTAAATTGTaGAAACTCCATTCTGTTATT | + |
|
Preference number: 4 (lower is better) Translates to: FIHSSLASCKLCSFSITISSPKL*KLHSVI Trigger: AATAACAGAATGGAGTTTGCACAATTTAGGGGAAGA...AATGGTGATTGAAAAGGAGCACAGTTTACAAGAGGCCAAAGAAGAGTGTATAAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197718.5 |
||
| 3UTR CAA 72 bp | ATTTATCTGTCTTTAGGTCAACTAATATTTCTGCCATaGCCAATTGTCATTGCTTCTGTTAAGCTCACACTG | + |
|
Preference number: 4 (lower is better) Translates to: IYLSLGQLIFLP*PIVIASVKLTL Trigger: CAGTGTGAGCTTAACAGAAGCAATGACAATTGGCAATGGCAGAAATATTAGTTGACCTAAAGACAGATAAAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
||
| CDS-3UTR CAA 90 bp | GGGCTGGTGAGATGGTTCCATGAGCACTGGCTCCTCTTCCAGAGGACCTCTGTTTATTTCCCTCTGTGCTaGGACTTCTTGGCGACGAGC | + |
|
Preference number: 5 (lower is better) Translates to: GLVRWFHEHWLLFQRTSVYFPLC*DFLATS Trigger: GCTCGTCGCCAAGAAGTCCAAGCACAGAGGGAAATA...AACAGAGGTCCTCTGGAAGAGGAGCCAGTGCTCATGGAACCATCTCACCAGCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
||
| CDS TCA 90 bp | CTCTGTGCTTGGACTTCTTGGCGACGAGCCTCCACCAGTTCTGAATaGGTGTTCTGCATTTGCTCCTGGGTTAGCCTCAATTCTTGCCCC | + |
|
Preference number: 5 (lower is better) Translates to: LCAWTSWRRASTSSE*VFCICSWVSLNSCP Trigger: GGGGCAAGAATTGAGGCTAACCCAGGAGCAAATGCAGAACACTCATTCAGAACTGGTGGAGGCTCGTCGCCAAGAAGTCCAAGCACAGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
||
| CDS-3UTR CAA 90 bp | GGGCTGGTGAGATGGTTCCATGAGCACTGGCTCCTCTTCCAGAGGACCTCTGTTTCTAAGATTGGAATGTaGGCTGCCTGCTCTTGTGCA | + |
|
Preference number: 5 (lower is better) Translates to: GLVRWFHEHWLLFQRTSVSKIGM*AACSCA Trigger: TGCACAAGAGCAGGCAGCCAACATTCCAATCTTAGA...AACAGAGGTCCTCTGGAAGAGGAGCCAGTGCTCATGGAACCATCTCACCAGCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
||
| CDS-3UTR CAA 90 bp | ACATGTGACTGGATAGGGCTGGTGAGATGGTTCCATGAGCACTGGCTCCTCTTCTCTGTTCTTCTAAGATaGGAATGTTGGCTGCCTGCT | + |
|
Preference number: 5 (lower is better) Translates to: TCDWIGLVRWFHEHWLLFSVLLR*ECWLPA Trigger: AGCAGGCAGCCAACATTCCAATCTTAGAAGAACAGA...GAAGAGGAGCCAGTGCTCATGGAACCATCTCACCAGCCCTATCCAGTCACATGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
||
| CDS-3UTR CAA 90 bp | GGGCTGGTGAGATGGTTCCATGAGCACTGGCTCCTCTTCCAGAGGACCTCTGTTGGTTCACAGTCAGATTaGCATGAAGCTTTTGAATTT | + |
|
Preference number: 5 (lower is better) Translates to: GLVRWFHEHWLLFQRTSVGSQSD*HEAFEF Trigger: AAATTCAAAAGCTTCATGCAAATCTGACTGTGAACC...AACAGAGGTCCTCTGGAAGAGGAGCCAGTGCTCATGGAACCATCTCACCAGCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
||
| CDS-3UTR CAA 90 bp | CCTCTTCCAGAGGACCTCTGTTTGACTCTCAGCACTCACATGATGACTAGTAACATGAGCTTCACGTACTaGAGAAGCCCCCAGTTCTTC | + |
|
Preference number: 5 (lower is better) Translates to: PLPEDLCLTLSTHMMTSNMSFTY*RSPQFF Trigger: GAAGAACTGGGGGCTTCTCAAGTACGTGAAGCTCAT...GTTACTAGTCATCATGTGAGTGCTGAGAGTCAAACAGAGGTCCTCTGGAAGAGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
||
| CDS-3UTR CAA 90 bp | ACATGTGACTGGATAGGGCTGGTGAGATGGTTCCATGAGCACTGGCTCCTCTTCGCTCTTGTTCTTGCTTaGATACCTGTTTTTCAAGTT | + |
|
Preference number: 5 (lower is better) Translates to: TCDWIGLVRWFHEHWLLFALVLA*IPVFQV Trigger: AACTTGAAAAACAGGTATCAAAGCAAGAACAAGAGC...GAAGAGGAGCCAGTGCTCATGGAACCATCTCACCAGCCCTATCCAGTCACATGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
||
| CDS-3UTR CAA 90 bp | ACATGTGACTGGATAGGGCTGGTGAGATGGTTCCATGAGCACTGGCTCCTCTTCACTCCTTCACTGAATTaGTTGTCTTTTCTAGTTCTG | + |
|
Preference number: 5 (lower is better) Translates to: TCDWIGLVRWFHEHWLLFTPSLN*LSFLVL Trigger: CAGAACTAGAAAAGACAACAAATTCAGTGAAGGAGT...GAAGAGGAGCCAGTGCTCATGGAACCATCTCACCAGCCCTATCCAGTCACATGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
||
| CDS-3UTR CAA 90 bp | TGCCAATTGTCATTGCTTCTGTTAAGCTCACACTGGGTGTTTTCAACTTTCAAAGTTGGCTGCCTGCTCTaGTGCAGACTCAAGCATAGC | + |
|
Preference number: 5 (lower is better) Translates to: CQLSLLLLSSHWVFSTFKVGCLL*CRLKHS Trigger: GCTATGCTTGAGTCTGCACAAGAGCAGGCAGCCAAC...TTTGAAAGTTGAAAACACCCAGTGTGAGCTTAACAGAAGCAATGACAATTGGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
||
| CDS-3UTR CAA 90 bp | GAGGGCTTCATTCCTTTGTCGCTCAGCTCTTTTTCCTTGTTTACTCTGTTCAAGTCTAAGATTGGAATGTaGGCTGCCTGCTCTTGTGCA | + |
|
Preference number: 5 (lower is better) Translates to: EGFIPLSLSSFSLFTLFKSKIGM*AACSCA Trigger: TGCACAAGAGCAGGCAGCCAACATTCCAATCTTAGA...CTTGAACAGAGTAAACAAGGAAAAAGAGCTGAGCGACAAAGGAATGAAGCCCTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000197718.5 |
||
| CDS-3UTR CAA 90 bp | ACCTTCAATTTTATACACTCTTCTTTGGCCTCTTGTAAACTGTGCTCCTTTTCAGTTGGCTGCCTGCTCTaGTGCAGACTCAAGCATAGC | + |
|
Preference number: 5 (lower is better) Translates to: TFNFIHSSLASCKLCSFSVGCLL*CRLKHS Trigger: GCTATGCTTGAGTCTGCACAAGAGCAGGCAGCCAAC...TGAAAAGGAGCACAGTTTACAAGAGGCCAAAGAAGAGTGTATAAAATTGAAGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197718.5 |
||
| CDS-3UTR CAA 90 bp | CCTCTTCCAGAGGACCTCTGTTTGACTCTCAGCACTCACATGATGACTAGTAACTCCAGTTGTCTGACCTaGATTGTTTCTTCAGATACA | + |
|
Preference number: 5 (lower is better) Translates to: PLPEDLCLTLSTHMMTSNSSCLT*IVSSDT Trigger: TGTATCTGAAGAAACAATCAAGGTCAGACAACTGGA...GTTACTAGTCATCATGTGAGTGCTGAGAGTCAAACAGAGGTCCTCTGGAAGAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
||
| CDS-3UTR CAA 90 bp | CCTCTTCCAGAGGACCTCTGTTTGACTCTCAGCACTCACATGATGACTAGTAACTTGTTCATTCAGTTGTaGAACAGACGTCTTCTGAGA | + |
|
Preference number: 5 (lower is better) Translates to: PLPEDLCLTLSTHMMTSNLFIQL*NRRLLR Trigger: TCTCAGAAGACGTCTGTTCAACAACTGAATGAACAA...GTTACTAGTCATCATGTGAGTGCTGAGAGTCAAACAGAGGTCCTCTGGAAGAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
||
| CDS-3UTR CAA 90 bp | CTTACTCAGCTCTTCTGCATTATAGAGGGCTTCATTCCTTTGTCGCTCAGCTCTTTAATGAAGCAACGTTaGCAAGCAAACTTTCCTCCT | + |
|
Preference number: 5 (lower is better) Translates to: LTQLFCIIEGFIPLSLSSLMKQR*QANFPP Trigger: AGGAGGAAAGTTTGCTTGCAAACGTTGCTTCATTAA...AGAGCTGAGCGACAAAGGAATGAAGCCCTCTATAATGCAGAAGAGCTGAGTAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197718.5 |
||
| CDS-3UTR CAA 90 bp | TGCCAATTGTCATTGCTTCTGTTAAGCTCACACTGGGTGTTTTCAACTTTCAAATCCCAGGTGGCTAGGTaGGGTGAGTTCTTCCAAAAT | + |
|
Preference number: 5 (lower is better) Translates to: CQLSLLLLSSHWVFSTFKSQVAR*GEFFQN Trigger: ATTTTGGAAGAACTCACCCAACCTAGCCACCTGGGA...TTTGAAAGTTGAAAACACCCAGTGTGAGCTTAACAGAAGCAATGACAATTGGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
||
| CDS-3UTR CAA 90 bp | TGCCAATTGTCATTGCTTCTGTTAAGCTCACACTGGGTGTTTTCAACTTTCAAAGAGGGCTTCATTCCTTaGTCGCTCAGCTCTTTTTCC | + |
|
Preference number: 5 (lower is better) Translates to: CQLSLLLLSSHWVFSTFKEGFIP*SLSSFS Trigger: GGAAAAAGAGCTGAGCGACAAAGGAATGAAGCCCTC...TTTGAAAGTTGAAAACACCCAGTGTGAGCTTAACAGAAGCAATGACAATTGGCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
||
| CDS TCA 90 bp | GTGGCTAGGTTGGGTGAGTTCTTCCAAAATAAGCCTTTCAGATCTTaGAGGACTGCAGACATACTCAGAATTTTCACTTGGACTAACACT | + |
|
Preference number: 5 (lower is better) Translates to: VARLGEFFQNKPFRS*RTADILRIFTWTNT Trigger: AGTGTTAGTCCAAGTGAAAATTCTGAGTATGTCTGCAGTCCTTCAAGATCTGAAAGGCTTATTTTGGAAGAACTCACCCAACCTAGCCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047677.9 ENSMUST00000197718.5 |
||
| CDS CCA 90 bp | CAGCAGCCAATGCATTTGTCCTCCTTGTCAGAAACACTACTCCTCTaGTGCTTACAAAGAGATGACCTAAAGCCAACTATTTCTCTTTTT | + |
|
Preference number: 5 (lower is better) Translates to: QQPMHLSSLSETLLL*CLQRDDLKPTISLF Trigger: AAAAAGAGAAATAGTTGGCTTTAGGTCATCTCTTTGTAAGCACCAGAGGAGTAGTGTTTCTGACAAGGAGGACAAATGCATTGGCTGCTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
||
| CDS-3UTR CAA 90 bp | GAGGGCTTCATTCCTTTGTCGCTCAGCTCTTTTTCCTTGTTTACTCTGTTCAAGAACTCTTCCCCTAAATaGTGCAAACTCCATTCTGTT | + |
|
Preference number: 5 (lower is better) Translates to: EGFIPLSLSSFSLFTLFKNSSPK*CKLHSV Trigger: AACAGAATGGAGTTTGCACAATTTAGGGGAAGAGTT...CTTGAACAGAGTAAACAAGGAAAAAGAGCTGAGCGACAAAGGAATGAAGCCCTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000197718.5 |
||
| CDS-3UTR CAA 90 bp | TGCCAATTGTCATTGCTTCTGTTAAGCTCACACTGGGTGTTTTCAACTTTCAAACAGCAGCCAATGCATTaGTCCTCCTTGTCAGAAACA | + |
|
Preference number: 5 (lower is better) Translates to: CQLSLLLLSSHWVFSTFKQQPMH*SSLSET Trigger: TGTTTCTGACAAGGAGGACAAATGCATTGGCTGCTG...TTTGAAAGTTGAAAACACCCAGTGTGAGCTTAACAGAAGCAATGACAATTGGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
||
| CDS TCA 90 bp | TTTTCTAAACTCTTCAGTTCCACCCTTGAATTATCAATGTCCTGCTaGCACAACTCTAGTCGTTCATTCTGTGTTGCAACACGAACCTTC | + |
|
Preference number: 5 (lower is better) Translates to: FSKLFSSTLELSMSC*HNSSRSFCVATRTF Trigger: GAAGGTTCGTGTTGCAACACAGAATGAACGACTAGAGTTGTGTCAGCAGGACATTGATAATTCAAGGGTGGAACTGAAGAGTTTAGAAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
||
| CDS-3UTR CAA 90 bp | ATATTTCTGCCATTGCCAATTGTCATTGCTTCTGTTAAGCTCACACTGGGTGTTCGTACTATTTCATCTTaGTCCTCTAACTCCCTCTCT | + |
|
Preference number: 5 (lower is better) Translates to: IFLPLPIVIASVKLTLGVRTISS*SSNSLS Trigger: AGAGAGGGAGTTAGAGGACAAAGATGAAATAGTACG...AACACCCAGTGTGAGCTTAACAGAAGCAATGACAATTGGCAATGGCAGAAATAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
||
| CDS-3UTR CAA 90 bp | ATATTTCTGCCATTGCCAATTGTCATTGCTTCTGTTAAGCTCACACTGGGTGTTTCTTCAGTTCCACCCTaGAATTATCAATGTCCTGCT | + |
|
Preference number: 5 (lower is better) Translates to: IFLPLPIVIASVKLTLGVSSVPP*NYQCPA Trigger: AGCAGGACATTGATAATTCAAGGGTGGAACTGAAGA...AACACCCAGTGTGAGCTTAACAGAAGCAATGACAATTGGCAATGGCAGAAATAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
||
| CDS-3UTR CAA 90 bp | TGCCAATTGTCATTGCTTCTGTTAAGCTCACACTGGGTGTTTTCAACTTTCAAACAGAAAGCTTCCACTTaGCATGGTTCTCTTGATGTG | + |
|
Preference number: 5 (lower is better) Translates to: CQLSLLLLSSHWVFSTFKQKAST*HGSLDV Trigger: CACATCAAGAGAACCATGCAAAGTGGAAGCTTTCTG...TTTGAAAGTTGAAAACACCCAGTGTGAGCTTAACAGAAGCAATGACAATTGGCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
||
| CDS GCA 90 bp | CAGCCAATGCATTTGTCCTCCTTGTCAGAAACACTACTCCTCTGGTaGTTACAAAGAGATGACCTAAAGCCAACTATTTCTCTTTTTAAT | + |
|
Preference number: 5 (lower is better) Translates to: QPMHLSSLSETLLLW*LQRDDLKPTISLFN Trigger: ATTAAAAAGAGAAATAGTTGGCTTTAGGTCATCTCTTTGTAAGCACCAGAGGAGTAGTGTTTCTGACAAGGAGGACAAATGCATTGGCTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
||
| CDS-3UTR CAA 90 bp | ACCTTCAATTTTATACACTCTTCTTTGGCCTCTTGTAAACTGTGCTCCTTTTCATCTGTTCTTCTAAGATaGGAATGTTGGCTGCCTGCT | + |
|
Preference number: 5 (lower is better) Translates to: TFNFIHSSLASCKLCSFSSVLLR*ECWLPA Trigger: AGCAGGCAGCCAACATTCCAATCTTAGAAGAACAGA...TGAAAAGGAGCACAGTTTACAAGAGGCCAAAGAAGAGTGTATAAAATTGAAGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197718.5 |
||
| CDS-3UTR CAA 90 bp | ATATTTCTGCCATTGCCAATTGTCATTGCTTCTGTTAAGCTCACACTGGGTGTTTTTATACACTCTTCTTaGGCCTCTTGTAAACTGTGC | + |
|
Preference number: 5 (lower is better) Translates to: IFLPLPIVIASVKLTLGVFIHSS*ASCKLC Trigger: GCACAGTTTACAAGAGGCCAAAGAAGAGTGTATAAA...AACACCCAGTGTGAGCTTAACAGAAGCAATGACAATTGGCAATGGCAGAAATAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
||
| CDS-3UTR CAA 90 bp | ATATTTCTGCCATTGCCAATTGTCATTGCTTCTGTTAAGCTCACACTGGGTGTTATCATTAGCAACATTTaGAGAGAGCTGGTTCACAGT | + |
|
Preference number: 5 (lower is better) Translates to: IFLPLPIVIASVKLTLGVIISNI*RELVHS Trigger: ACTGTGAACCAGCTCTCTCAAAATGTTGCTAATGAT...AACACCCAGTGTGAGCTTAACAGAAGCAATGACAATTGGCAATGGCAGAAATAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS GCA 90 bp | TCTTATTGCAAGCTTAATCCTCAATTCAGAAATCATGAGTTTATTTaGCTCACAGCAGCCAATGCATTTGTCCTCCTTGTCAGAAACACT | + |
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Preference number: 5 (lower is better) Translates to: SYCKLNPQFRNHEFI*LTAANAFVLLVRNT Trigger: AGTGTTTCTGACAAGGAGGACAAATGCATTGGCTGCTGTGAGGCAAATAAACTCATGATTTCTGAATTGAGGATTAAGCTTGCAATAAGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS CCA 90 bp | TTGATAATCAGTACTATCAGATGTTTTACAAACTTTCTTATAAGGTaGGTAAATCAAACGTCCCAGGTGGCTAGGTTGGGTGAGTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: LIISTIRCFTNFLIR*VNQTSQVARLGEFF Trigger: GAAGAACTCACCCAACCTAGCCACCTGGGACGTTTGATTTACCCACCTTATAAGAAAGTTTGTAAAACATCTGATAGTACTGATTATCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047677.9 ENSMUST00000197718.5 |
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| CDS CCA 90 bp | AGAGCTTCCCGTTTCTGCATGGTTTCTGTTAATTCAGTTTCTGTGTaGTGTTGTAACCTTTCTAACTCCTTCACTGAATTTGTTGTCTTT | + |
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Preference number: 5 (lower is better) Translates to: RASRFCMVSVNSVSV*CCNLSNSFTEFVVF Trigger: AAAGACAACAAATTCAGTGAAGGAGTTAGAAAGGTTACAACACCACACAGAAACTGAATTAACAGAAACCATGCAGAAACGGGAAGCTCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR CAA 90 bp | TGCCAATTGTCATTGCTTCTGTTAAGCTCACACTGGGTGTTTTCAACTTTCAAATTAATGAAGCAACGTTaGCAAGCAAACTTTCCTCCT | + |
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Preference number: 5 (lower is better) Translates to: CQLSLLLLSSHWVFSTFKLMKQR*QANFPP Trigger: AGGAGGAAAGTTTGCTTGCAAACGTTGCTTCATTAA...TTTGAAAGTTGAAAACACCCAGTGTGAGCTTAACAGAAGCAATGACAATTGGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR CAA 90 bp | TGCCAATTGTCATTGCTTCTGTTAAGCTCACACTGGGTGTTTTCAACTTTCAAAAACTCTTCCCCTAAATaGTGCAAACTCCATTCTGTT | + |
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Preference number: 5 (lower is better) Translates to: CQLSLLLLSSHWVFSTFKNSSPK*CKLHSV Trigger: AACAGAATGGAGTTTGCACAATTTAGGGGAAGAGTT...TTTGAAAGTTGAAAACACCCAGTGTGAGCTTAACAGAAGCAATGACAATTGGCA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR CAA 90 bp | TGCCAATTGTCATTGCTTCTGTTAAGCTCACACTGGGTGTTTTCAACTTTCAAATCTCGAAGCTGTTCTTaGGCATTTTGCAACTTTTCA | + |
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Preference number: 5 (lower is better) Translates to: CQLSLLLLSSHWVFSTFKSRSCS*AFCNFS Trigger: TGAAAAGTTGCAAAATGCCAAAGAACAGCTTCGAGA...TTTGAAAGTTGAAAACACCCAGTGTGAGCTTAACAGAAGCAATGACAATTGGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR CAA 90 bp | TGCCAATTGTCATTGCTTCTGTTAAGCTCACACTGGGTGTTTTCAACTTTCAAAATTCCTGTCTTGAACTaGTTGATGCAAATTGCTCAC | + |
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Preference number: 5 (lower is better) Translates to: CQLSLLLLSSHWVFSTFKIPVLN*LMQIAH Trigger: GTGAGCAATTTGCATCAACAAGTTCAAGACAGGAAT...TTTGAAAGTTGAAAACACCCAGTGTGAGCTTAACAGAAGCAATGACAATTGGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR CAA 90 bp | ATATTTCTGCCATTGCCAATTGTCATTGCTTCTGTTAAGCTCACACTGGGTGTTTCATGTCCAGAAATTTaGGCTTGCAATCTGGTTAAT | + |
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Preference number: 5 (lower is better) Translates to: IFLPLPIVIASVKLTLGVSCPEI*ACNLVN Trigger: ATTAACCAGATTGCAAGCCAAAATTTCTGGACATGA...AACACCCAGTGTGAGCTTAACAGAAGCAATGACAATTGGCAATGGCAGAAATAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR CAA 90 bp | TGCCAATTGTCATTGCTTCTGTTAAGCTCACACTGGGTGTTTTCAACTTTCAAATTGTTCTTTAAACTGTaGGTCTCTTTTCTCCAGTTG | + |
|
Preference number: 5 (lower is better) Translates to: CQLSLLLLSSHWVFSTFKLFFKL*VSFLQL Trigger: CAACTGGAGAAAAGAGACCAACAGTTTAAAGAACAA...TTTGAAAGTTGAAAACACCCAGTGTGAGCTTAACAGAAGCAATGACAATTGGCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS-3UTR CAA 90 bp | TGCCAATTGTCATTGCTTCTGTTAAGCTCACACTGGGTGTTTTCAACTTTCAAACTTCTCTTTAGAGAGTaGTTTTATATCCTCCAGTTC | + |
|
Preference number: 5 (lower is better) Translates to: CQLSLLLLSSHWVFSTFKLLFRE*FYILQF Trigger: GAACTGGAGGATATAAAACAACTCTCTAAAGAGAAG...TTTGAAAGTTGAAAACACCCAGTGTGAGCTTAACAGAAGCAATGACAATTGGCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS TCA 90 bp | ATTTCCACTTTACTTTCTGTCAAGAGTCTATCTAGTGATTCAAGGTaGTGCTGTTTACACAGTATATCTTGCTGCAAAATGGACATAGTC | + |
|
Preference number: 5 (lower is better) Translates to: ISTLLSVKSLSSDSR*CCLHSISCCKMDIV Trigger: GACTATGTCCATTTTGCAGCAAGATATACTGTGTAAACAGCATCACCTTGAATCACTAGATAGACTCTTGACAGAAAGTAAAGTGGAAAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS GCA 90 bp | TCCAAATTTATAATCTGTTCTTCTAAGATTGGAATGTTGGCTGCCTaGTCTTGTGCAGACTCAAGCATAGCAATTTTTGCTTTTGATTGT | + |
|
Preference number: 5 (lower is better) Translates to: SKFIICSSKIGMLAA*SCADSSIAIFAFDC Trigger: ACAATCAAAAGCAAAAATTGCTATGCTTGAGTCTGCACAAGAGCAGGCAGCCAACATTCCAATCTTAGAAGAACAGATTATAAATTTGGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000047677.9 ENSMUST00000197718.5 |
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| CDS GCA 90 bp | ACTATCATTAGCAACATTTTGAGAGAGCTGGTTCACAGTCAGATTTaGATGAAGCTTTTGAATTTCAGCCTCTCTTATTGCAAGCTTAAT | + |
|
Preference number: 5 (lower is better) Translates to: TIISNILRELVHSQI*MKLLNFSLSYCKLN Trigger: ATTAAGCTTGCAATAAGAGAGGCTGAAATTCAAAAGCTTCATGCAAATCTGACTGTGAACCAGCTCTCTCAAAATGTTGCTAATGATAGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS GCA 72 bp | CTCCAGTTCACCAGCAAGCCTTTCTATTTCCCTCTGTaGTTGGACTTCTTGGCGACGAGCCTCCACCAGTTC | + |
|
Preference number: 6 (lower is better) Translates to: LQFTSKPFYFPL*LDFLATSLHQF Trigger: GAACTGGTGGAGGCTCGTCGCCAAGAAGTCCAAGCACAGAGGGAAATAGAAAGGCTTGCTGGTGAACTGGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS CCA 72 bp | AGTTCACCAGCAAGCCTTTCTATTTCCCTCTGTGCTTaGACTTCTTGGCGACGAGCCTCCACCAGTTCTGAA | + |
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Preference number: 6 (lower is better) Translates to: SSPASLSISLCA*TSWRRASTSSE Trigger: TTCAGAACTGGTGGAGGCTCGTCGCCAAGAAGTCCAAGCACAGAGGGAAATAGAAAGGCTTGCTGGTGAACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS GCA 72 bp | GTGTTCTGCATTTGCTCCTGGGTTAGCCTCAATTCTTaGCCCAAATCAATGACCTCCTTGTACTGGGTAGCA | + |
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Preference number: 6 (lower is better) Translates to: VFCICSWVSLNS*PKSMTSLYWVA Trigger: TGCTACCCAGTACAAGGAGGTCATTGATTTGGGGCAAGAATTGAGGCTAACCCAGGAGCAAATGCAGAACAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS CAA 72 bp | ATAAGGTGGGTAAATCAAACGTCCCAGGTGGCTAGGTaGGGTGAGTTCTTCCAAAATAAGCCTTTCAGATCT | + |
|
Preference number: 6 (lower is better) Translates to: IRWVNQTSQVAR*GEFFQNKPFRS Trigger: AGATCTGAAAGGCTTATTTTGGAAGAACTCACCCAACCTAGCCACCTGGGACGTTTGATTTACCCACCTTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047677.9 ENSMUST00000197718.5 |
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| CDS CAA 72 bp | TTATTTGCCTCACAGCAGCCAATGCATTTGTCCTCCTaGTCAGAAACACTACTCCTCTGGTGCTTACAAAGA | + |
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Preference number: 6 (lower is better) Translates to: LFASQQPMHLSS*SETLLLWCLQR Trigger: TCTTTGTAAGCACCAGAGGAGTAGTGTTTCTGACAAGGAGGACAAATGCATTGGCTGCTGTGAGGCAAATAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS GCA 72 bp | GCATTCTGTAGTTCGTTTTCGAGAGCTTCCCGTTTCTaGATGGTTTCTGTTAATTCAGTTTCTGTGTGGTGT | + |
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Preference number: 6 (lower is better) Translates to: AFCSSFSRASRF*MVSVNSVSVWC Trigger: ACACCACACAGAAACTGAATTAACAGAAACCATGCAGAAACGGGAAGCTCTCGAAAACGAACTACAGAATGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS GCA 72 bp | CATTTGTCCTCCTTGTCAGAAACACTACTCCTCTGGTaGTTACAAAGAGATGACCTAAAGCCAACTATTTCT | + |
|
Preference number: 6 (lower is better) Translates to: HLSSLSETLLLW*LQRDDLKPTIS Trigger: AGAAATAGTTGGCTTTAGGTCATCTCTTTGTAAGCACCAGAGGAGTAGTGTTTCTGACAAGGAGGACAAATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS CCA 72 bp | ATGCATTTGTCCTCCTTGTCAGAAACACTACTCCTCTaGTGCTTACAAAGAGATGACCTAAAGCCAACTATT | + |
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Preference number: 6 (lower is better) Translates to: MHLSSLSETLLL*CLQRDDLKPTI Trigger: AATAGTTGGCTTTAGGTCATCTCTTTGTAAGCACCAGAGGAGTAGTGTTTCTGACAAGGAGGACAAATGCAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS CCA 72 bp | TCTGTAGTTCGTTTTCGAGAGCTTCCCGTTTCTGCATaGTTTCTGTTAATTCAGTTTCTGTGTGGTGTTGTA | + |
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Preference number: 6 (lower is better) Translates to: SVVRFRELPVSA*FLLIQFLCGVV Trigger: TACAACACCACACAGAAACTGAATTAACAGAAACCATGCAGAAACGGGAAGCTCTCGAAAACGAACTACAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS CAA 72 bp | CAAACGATTTCCATGAGCTTCCTTCTCTTTAGAGAGTaGTTTTATATCCTCCAGTTCACCAGCAAGCCTTTC | + |
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Preference number: 6 (lower is better) Translates to: QTISMSFLLFRE*FYILQFTSKPF Trigger: GAAAGGCTTGCTGGTGAACTGGAGGATATAAAACAACTCTCTAAAGAGAAGGAAGCTCATGGAAATCGTTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS CAA 72 bp | CAGACGTCTTCTGAGATTCAGCAGAAAGCTTCCACTTaGCATGGTTCTCTTGATGTGAAATCATCTCTATCT | + |
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Preference number: 6 (lower is better) Translates to: QTSSEIQQKAST*HGSLDVKSSLS Trigger: AGATAGAGATGATTTCACATCAAGAGAACCATGCAAAGTGGAAGCTTTCTGCTGAATCTCAGAAGACGTCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS CAA 72 bp | TGCAGCTTCAATGACTTCATTCCTGTCTTGAACTTGTaGATGCAAATTGCTCACAGTATCCTGAGCTTCTTC | + |
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Preference number: 6 (lower is better) Translates to: CSFNDFIPVLNL*MQIAHSILSFF Trigger: GAAGAAGCTCAGGATACTGTGAGCAATTTGCATCAACAAGTTCAAGACAGGAATGAAGTCATTGAAGCTGCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS CAA 90 bp | GTTGTTGAACAGACGTCTTCTGAGATTCAGCAGAAAGCTTCCACTTaGCATGGTTCTCTTGATGTGAAATCATCTCTATCTGATAAGCTT | + |
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Preference number: 6 (lower is better) Translates to: VVEQTSSEIQQKAST*HGSLDVKSSLSDKL Trigger: AAGCTTATCAGATAGAGATGATTTCACATCAAGAGAACCATGCAAAGTGGAAGCTTTCTGCTGAATCTCAGAAGACGTCTGTTCAACAAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS CAA 90 bp | TGCTTCATTTGCAGCTTCAATGACTTCATTCCTGTCTTGAACTTGTaGATGCAAATTGCTCACAGTATCCTGAGCTTCTTCCAATTCTTG | + |
|
Preference number: 6 (lower is better) Translates to: CFICSFNDFIPVLNL*MQIAHSILSFFQFL Trigger: CAAGAATTGGAAGAAGCTCAGGATACTGTGAGCAATTTGCATCAACAAGTTCAAGACAGGAATGAAGTCATTGAAGCTGCAAATGAAGCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS TCA 72 bp | TTGGGTGAGTTCTTCCAAAATAAGCCTTTCAGATCTTaGAGGACTGCAGACATACTCAGAATTTTCACTTGG | + |
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Preference number: 6 (lower is better) Translates to: LGEFFQNKPFRS*RTADILRIFTW Trigger: CCAAGTGAAAATTCTGAGTATGTCTGCAGTCCTTCAAGATCTGAAAGGCTTATTTTGGAAGAACTCACCCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047677.9 ENSMUST00000197718.5 |
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| CDS CAA 72 bp | TGTCCTGCTGACACAACTCTAGTCGTTCATTCTGTGTaGCAACACGAACCTTCAATTCTCGATTTTCATTTA | + |
|
Preference number: 6 (lower is better) Translates to: CPADTTLVVHSV*QHEPSILDFHL Trigger: TAAATGAAAATCGAGAATTGAAGGTTCGTGTTGCAACACAGAATGAACGACTAGAGTTGTGTCAGCAGGACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS CAA 72 bp | AGAGAGCTGGTTCACAGTCAGATTTGCATGAAGCTTTaGAATTTCAGCCTCTCTTATTGCAAGCTTAATCCT | + |
|
Preference number: 6 (lower is better) Translates to: RELVHSQICMKL*NFSLSYCKLNP Trigger: AGGATTAAGCTTGCAATAAGAGAGGCTGAAATTCAAAAGCTTCATGCAAATCTGACTGTGAACCAGCTCTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS CAA 72 bp | ATTTGCAGCTTCAATGACTTCATTCCTGTCTTGAACTaGTTGATGCAAATTGCTCACAGTATCCTGAGCTTC | + |
|
Preference number: 6 (lower is better) Translates to: ICSFNDFIPVLN*LMQIAHSILSF Trigger: GAAGCTCAGGATACTGTGAGCAATTTGCATCAACAAGTTCAAGACAGGAATGAAGTCATTGAAGCTGCAAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS CAA 90 bp | ATGGTATCTGGGTTATCAGTTTTTCTAAACTCTTCAGTTCCACCCTaGAATTATCAATGTCCTGCTGACACAACTCTAGTCGTTCATTCT | + |
|
Preference number: 6 (lower is better) Translates to: MVSGLSVFLNSSVPP*NYQCPADTTLVVHS Trigger: AGAATGAACGACTAGAGTTGTGTCAGCAGGACATTGATAATTCAAGGGTGGAACTGAAGAGTTTAGAAAAACTGATAACCCAGATACCAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS TCA 72 bp | AGCAGAAAGCTTCCACTTTGCATGGTTCTCTTGATGTaGAATCATCTCTATCTGATAAGCTTCTTTCAGAGA | + |
|
Preference number: 6 (lower is better) Translates to: SRKLPLCMVLLM*NHLYLISFFQR Trigger: TCTCTGAAAGAAGCTTATCAGATAGAGATGATTTCACATCAAGAGAACCATGCAAAGTGGAAGCTTTCTGCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS CAA 90 bp | CTGGATAACTCTTCCCCTAAATTGTGCAAACTCCATTCTGTTATTTaGAGTTCATGTCTTAATGAAGCAACGTTTGCAAGCAAACTTTCC | + |
|
Preference number: 6 (lower is better) Translates to: LDNSSPKLCKLHSVI*SSCLNEATFASKLS Trigger: GGAAAGTTTGCTTGCAAACGTTGCTTCATTAAGACATGAACTCAAAATAACAGAATGGAGTTTGCACAATTTAGGGGAAGAGTTATCCAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047677.9 ENSMUST00000197718.5 |
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| CDS CAA 90 bp | AACATTTTGAGAGAGCTGGTTCACAGTCAGATTTGCATGAAGCTTTaGAATTTCAGCCTCTCTTATTGCAAGCTTAATCCTCAATTCAGA | + |
|
Preference number: 6 (lower is better) Translates to: NILRELVHSQICMKL*NFSLSYCKLNPQFR Trigger: TCTGAATTGAGGATTAAGCTTGCAATAAGAGAGGCTGAAATTCAAAAGCTTCATGCAAATCTGACTGTGAACCAGCTCTCTCAAAATGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS TCA 72 bp | TCTTGTTCTTTAAACTGTTGGTCTCTTTTCTCCAGTTaGGTTTCGAGTTGCTCAATCTGTTTTTCCATTTCC | + |
|
Preference number: 6 (lower is better) Translates to: SCSLNCWSLFSS*VSSCSICFSIS Trigger: GGAAATGGAAAAACAGATTGAGCAACTCGAAACTCAACTGGAGAAAAGAGACCAACAGTTTAAAGAACAAGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS CAA 72 bp | TCTTCCCCTAAATTGTGCAAACTCCATTCTGTTATTTaGAGTTCATGTCTTAATGAAGCAACGTTTGCAAGC | + |
|
Preference number: 6 (lower is better) Translates to: SSPKLCKLHSVI*SSCLNEATFAS Trigger: GCTTGCAAACGTTGCTTCATTAAGACATGAACTCAAAATAACAGAATGGAGTTTGCACAATTTAGGGGAAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047677.9 ENSMUST00000197718.5 |
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| CDS CAA 90 bp | AATTATCAATGTCCTGCTGACACAACTCTAGTCGTTCATTCTGTGTaGCAACACGAACCTTCAATTCTCGATTTTCATTTAATAAGGAAA | + |
|
Preference number: 6 (lower is better) Translates to: NYQCPADTTLVVHSV*QHEPSILDFHLIRK Trigger: TTTCCTTATTAAATGAAAATCGAGAATTGAAGGTTCGTGTTGCAACACAGAATGAACGACTAGAGTTGTGTCAGCAGGACATTGATAATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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| CDS TCA 72 bp | TTACTTTCTGTCAAGAGTCTATCTAGTGATTCAAGGTaGTGCTGTTTACACAGTATATCTTGCTGCAAAATG | + |
|
Preference number: 6 (lower is better) Translates to: LLSVKSLSSDSR*CCLHSISCCKM Trigger: CATTTTGCAGCAAGATATACTGTGTAAACAGCATCACCTTGAATCACTAGATAGACTCTTGACAGAAAGTAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047677.9 |
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