RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CCDC175 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021086

Ensembl transcript IDs: ENSMUST00000021494.6

Found 36 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp CTAGCGCATTGGCCGCTACCGAGGAGCCCAAGGTTGTGGGGAAGGTaGATAGCTCGAGGGACAGGTTTGTGGAGACCGAGGCTGGCCGCA +
Preference number: 5 (lower is better)
Translates to: LAHWPLPRSPRLWGR*IARGTGLWRPRLAA
Trigger: TGCGGCCAGCCTCGGTCTCCACAAACCTGTCCCTCGAGCTATGCACCTTCCCCACAACCTTGGGCTCCTCGGTAGCGGCCAATGCGCTAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021494.6
CDS CCA 90 bp AGAGCTGCTCTAGCGCATTGGCCGCTACCGAGGAGCCCAAGGTTGTaGGGAAGGTGCATAGCTCGAGGGACAGGTTTGTGGAGACCGAGG +
Preference number: 5 (lower is better)
Translates to: RAALAHWPLPRSPRL*GRCIARGTGLWRPR
Trigger: CCTCGGTCTCCACAAACCTGTCCCTCGAGCTATGCACCTTCCCCACAACCTTGGGCTCCTCGGTAGCGGCCAATGCGCTAGAGCAGCTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021494.6
CDS CCA 90 bp TGCGAGCATCTGCAATACATTCTTCCAGCTCCCTGTGTATGCTGTTaGGCACAGTCTCCAGCAGAAAGTAAAGTCGGCTCAGCTCCATGC +
Preference number: 5 (lower is better)
Translates to: CEHLQYILPAPCVCC*AQSPAESKVGSAPC
Trigger: GCATGGAGCTGAGCCGACTTTACTTTCTGCTGGAGACTGTGCCCAACAGCATACACAGGGAGCTGGAAGAATGTATTGCAGATGCTCGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021494.6
CDS GCA 90 bp GCTTTCTCTTCCAAGGTTTGGTTCAGCAGCAGGACATACTGTTCATaGCTCTTCGCCAGCTCTGCTTGCTTTGCACCCAGAACTTCATTC +
Preference number: 5 (lower is better)
Translates to: AFSSKVWFSSRTYCS*LFASSACFAPRTSF
Trigger: GAATGAAGTTCTGGGTGCAAAGCAAGCAGAGCTGGCGAAGAGGCATGAACAGTATGTCCTGCTGCTGAACCAAACCTTGGAAGAGAAAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021494.6
CDS GCA 90 bp TTCAGCAGCAGGACATACTGTTCATGCCTCTTCGCCAGCTCTGCTTaGTTTGCACCCAGAACTTCATTCATGCTCTTCAGCTCACTTATT +
Preference number: 5 (lower is better)
Translates to: FSSRTYCSCLFASSA*FAPRTSFMLFSSLI
Trigger: AATAAGTGAGCTGAAGAGCATGAATGAAGTTCTGGGTGCAAAGCAAGCAGAGCTGGCGAAGAGGCATGAACAGTATGTCCTGCTGCTGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021494.6
CDS GCA 90 bp GCCTCTTCGCCAGCTCTGCTTGCTTTGCACCCAGAACTTCATTCATaGTCTTCAGCTCACTTATTTTGTTGGTTAGAAATTTTACTTCAT +
Preference number: 5 (lower is better)
Translates to: ASSPALLALHPELHS*SSAHLFCWLEILLH
Trigger: ATGAAGTAAAATTTCTAACCAACAAAATAAGTGAGCTGAAGAGCATGAATGAAGTTCTGGGTGCAAAGCAAGCAGAGCTGGCGAAGAGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021494.6
CDS GCA 90 bp TCTTTTTATTTGACTTATCTCAATGATATTGAGTTTGCGAGCATCTaGAATACATTCTTCCAGCTCCCTGTGTATGCTGTTGGGCACAGT +
Preference number: 5 (lower is better)
Translates to: SFYLTYLNDIEFASI*NTFFQLPVYAVGHS
Trigger: ACTGTGCCCAACAGCATACACAGGGAGCTGGAAGAATGTATTGCAGATGCTCGCAAACTCAATATCATTGAGATAAGTCAAATAAAAAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021494.6
CDS TCA 90 bp CCGATTTTTAGCCATGACTTCTATTTGTCTTCCATATGCTTCCCGTaGTGCTCTATTAAGATCATTAAGGACTCCAAATCCGTTTTCCAT +
Preference number: 5 (lower is better)
Translates to: PIFSHDFYLSSICFP*CSIKIIKDSKSVFH
Trigger: ATGGAAAACGGATTTGGAGTCCTTAATGATCTTAATAGAGCATCACGGGAAGCATATGGAAGACAAATAGAAGTCATGGCTAAAAATCGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021494.6
CDS TCA 90 bp CACCTGAGTGCTGTACAGTCACTACTTGCTTTGACGCGTATTCATTaGTTTCTTTCTTCAGGTAGGCAAGGTATTCTCTTAATTTTTGAT +
Preference number: 5 (lower is better)
Translates to: HLSAVQSLLALTRIH*FLSSGRQGILLIFD
Trigger: ATCAAAAATTAAGAGAATACCTTGCCTACCTGAAGAAAGAAATCAATGAATACGCGTCAAAGCAAGTAGTGACTGTACAGCACTCAGGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021494.6
CDS GCA 72 bp TGGCCGCTACCGAGGAGCCCAAGGTTGTGGGGAAGGTaGATAGCTCGAGGGACAGGTTTGTGGAGACCGAGG +
Preference number: 6 (lower is better)
Translates to: WPLPRSPRLWGR*IARGTGLWRPR
Trigger: CCTCGGTCTCCACAAACCTGTCCCTCGAGCTATGCACCTTCCCCACAACCTTGGGCTCCTCGGTAGCGGCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021494.6
CDS CAA 90 bp CGAAGAGCTGCTCTAGCGCATTGGCCGCTACCGAGGAGCCCAAGGTaGTGGGGAAGGTGCATAGCTCGAGGGACAGGTTTGTGGAGACCG +
Preference number: 6 (lower is better)
Translates to: RRAALAHWPLPRSPR*WGRCIARGTGLWRP
Trigger: CGGTCTCCACAAACCTGTCCCTCGAGCTATGCACCTTCCCCACAACCTTGGGCTCCTCGGTAGCGGCCAATGCGCTAGAGCAGCTCTTCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021494.6
CDS CCA 72 bp CTAGCGCATTGGCCGCTACCGAGGAGCCCAAGGTTGTaGGGAAGGTGCATAGCTCGAGGGACAGGTTTGTGG +
Preference number: 6 (lower is better)
Translates to: LAHWPLPRSPRL*GRCIARGTGLW
Trigger: CCACAAACCTGTCCCTCGAGCTATGCACCTTCCCCACAACCTTGGGCTCCTCGGTAGCGGCCAATGCGCTAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021494.6
CDS CAA 72 bp TTTGTGGAGACCGAGGCTGGCCGCACCAACTTCTTGTaGACAAACCCCTCGGGGGTCCAGGAGCGTATGGCC +
Preference number: 6 (lower is better)
Translates to: FVETEAGRTNFL*TNPSGVQERMA
Trigger: GGCCATACGCTCCTGGACCCCCGAGGGGTTTGTCAACAAGAAGTTGGTGCGGCCAGCCTCGGTCTCCACAAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021494.6
CDS CAA 72 bp GCTCTAGCGCATTGGCCGCTACCGAGGAGCCCAAGGTaGTGGGGAAGGTGCATAGCTCGAGGGACAGGTTTG +
Preference number: 6 (lower is better)
Translates to: ALAHWPLPRSPR*WGRCIARGTGL
Trigger: CAAACCTGTCCCTCGAGCTATGCACCTTCCCCACAACCTTGGGCTCCTCGGTAGCGGCCAATGCGCTAGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021494.6
CDS CCA 72 bp GAGATTTTTCTACAACGAAGAGCTGCTCTAGCGCATTaGCCGCTACCGAGGAGCCCAAGGTTGTGGGGAAGG +
Preference number: 6 (lower is better)
Translates to: EIFLQRRAALAH*PLPRSPRLWGR
Trigger: CCTTCCCCACAACCTTGGGCTCCTCGGTAGCGGCCAATGCGCTAGAGCAGCTCTTCGTTGTAGAAAAATCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021494.6
CDS CAA 72 bp AGAGATTTTTCTACAACGAAGAGCTGCTCTAGCGCATaGGCCGCTACCGAGGAGCCCAAGGTTGTGGGGAAG +
Preference number: 6 (lower is better)
Translates to: RDFSTTKSCSSA*AATEEPKVVGK
Trigger: CTTCCCCACAACCTTGGGCTCCTCGGTAGCGGCCAATGCGCTAGAGCAGCTCTTCGTTGTAGAAAAATCTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021494.6
CDS GCA 72 bp TCCAAGGTTTGGTTCAGCAGCAGGACATACTGTTCATaGCTCTTCGCCAGCTCTGCTTGCTTTGCACCCAGA +
Preference number: 6 (lower is better)
Translates to: SKVWFSSRTYCS*LFASSACFAPR
Trigger: TCTGGGTGCAAAGCAAGCAGAGCTGGCGAAGAGGCATGAACAGTATGTCCTGCTGCTGAACCAAACCTTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021494.6
CDS CAA 72 bp CCTGTACTGCAGCTTCGCCACCAGAGACTTAATTTCTaGCATAGTGTCTTCTCCGGTGCCCACCAGTTCCTT +
Preference number: 6 (lower is better)
Translates to: PVLQLRHQRLNF*HSVFSGAHQFL
Trigger: AAGGAACTGGTGGGCACCGGAGAAGACACTATGCAAGAAATTAAGTCTCTGGTGGCGAAGCTGCAGTACAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021494.6
CDS TCA 72 bp GGTGTTGCTCATCGTTTTCTCGTCTTGCTTCTTTGCTaGAACGTCACTGTGGAGGGACCTGAGCATCCTGTT +
Preference number: 6 (lower is better)
Translates to: GVAHRFLVLLLC*NVTVEGPEHPV
Trigger: AACAGGATGCTCAGGTCCCTCCACAGTGACGTTTCAGCAAAGAAGCAAGACGAGAAAACGATGAGCAACACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021494.6
CDS GCA 72 bp AGGACATACTGTTCATGCCTCTTCGCCAGCTCTGCTTaGTTTGCACCCAGAACTTCATTCATGCTCTTCAGC +
Preference number: 6 (lower is better)
Translates to: RTYCSCLFASSA*FAPRTSFMLFS
Trigger: GCTGAAGAGCATGAATGAAGTTCTGGGTGCAAAGCAAGCAGAGCTGGCGAAGAGGCATGAACAGTATGTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021494.6
CDS GCA 72 bp CAGCAGGACATACTGTTCATGCCTCTTCGCCAGCTCTaGTTGCTTTGCACCCAGAACTTCATTCATGCTCTT +
Preference number: 6 (lower is better)
Translates to: QQDILFMPLRQL*LLCTQNFIHAL
Trigger: AAGAGCATGAATGAAGTTCTGGGTGCAAAGCAAGCAGAGCTGGCGAAGAGGCATGAACAGTATGTCCTGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021494.6
CDS CAA 72 bp CAGGACATACTGTTCATGCCTCTTCGCCAGCTCTGCTaGCTTTGCACCCAGAACTTCATTCATGCTCTTCAG +
Preference number: 6 (lower is better)
Translates to: QDILFMPLRQLC*LCTQNFIHALQ
Trigger: CTGAAGAGCATGAATGAAGTTCTGGGTGCAAAGCAAGCAGAGCTGGCGAAGAGGCATGAACAGTATGTCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021494.6
CDS CAA 90 bp GTTCAGCAGCAGGACATACTGTTCATGCCTCTTCGCCAGCTCTGCTaGCTTTGCACCCAGAACTTCATTCATGCTCTTCAGCTCACTTAT +
Preference number: 6 (lower is better)
Translates to: VQQQDILFMPLRQLC*LCTQNFIHALQLTY
Trigger: ATAAGTGAGCTGAAGAGCATGAATGAAGTTCTGGGTGCAAAGCAAGCAGAGCTGGCGAAGAGGCATGAACAGTATGTCCTGCTGCTGAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021494.6
CDS GCA 72 bp ATACTGTTCATGCCTCTTCGCCAGCTCTGCTTGCTTTaGACCCAGAACTTCATTCATGCTCTTCAGCTCACT +
Preference number: 6 (lower is better)
Translates to: ILFMPLRQLCLL*TQNFIHALQLT
Trigger: AGTGAGCTGAAGAGCATGAATGAAGTTCTGGGTGCAAAGCAAGCAGAGCTGGCGAAGAGGCATGAACAGTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021494.6
CDS CAA 72 bp ACAGCTTCCTCTTCCTTCAAGGTAGCCTTATACTGTTaGAGGAGTGTGCTCAGTTTCTCTCGGAGATCTTCG +
Preference number: 6 (lower is better)
Translates to: TASSSFKVALYC*RSVLSFSRRSS
Trigger: CGAAGATCTCCGAGAGAAACTGAGCACACTCCTCAAACAGTATAAGGCTACCTTGAAGGAAGAGGAAGCTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021494.6
CDS GCA 72 bp CAGGTGCTGATGGACTCAATTTTCTCATCCCTGTACTaGAGCTTCGCCACCAGAGACTTAATTTCTTGCATA +
Preference number: 6 (lower is better)
Translates to: QVLMDSIFSSLY*SFATRDLISCI
Trigger: TATGCAAGAAATTAAGTCTCTGGTGGCGAAGCTGCAGTACAGGGATGAGAAAATTGAGTCCATCAGCACCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021494.6
CDS CAA 90 bp CCTAGCATGAGAGGATGGGGAAAAACGAAGTATTTCTTGATTCTTTaGCTTCTTTCCGAGCTTCTGGAGATCCTCTTTACTAAGGCTGGC +
Preference number: 6 (lower is better)
Translates to: PSMRGWGKTKYFLIL*LLSELLEILFTKAG
Trigger: GCCAGCCTTAGTAAAGAGGATCTCCAGAAGCTCGGAAAGAAGCAAAAGAATCAAGAAATACTTCGTTTTTCCCCATCCTCTCATGCTAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021494.6
CDS GCA 72 bp CAAGAGAGGTCACCTGAGTGCTGTACAGTCACTACTTaGTTTGACGCGTATTCATTGATTTCTTTCTTCAGG +
Preference number: 6 (lower is better)
Translates to: QERSPECCTVTT*FDAYSLISFFR
Trigger: CCTGAAGAAAGAAATCAATGAATACGCGTCAAAGCAAGTAGTGACTGTACAGCACTCAGGTGACCTCTCTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021494.6
CDS GCA 72 bp CCAGCTCTGCTTGCTTTGCACCCAGAACTTCATTCATaGTCTTCAGCTCACTTATTTTGTTGGTTAGAAATT +
Preference number: 6 (lower is better)
Translates to: PALLALHPELHS*SSAHLFCWLEI
Trigger: AATTTCTAACCAACAAAATAAGTGAGCTGAAGAGCATGAATGAAGTTCTGGGTGCAAAGCAAGCAGAGCTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021494.6
CDS TCA 72 bp AGCCATGACTTCTATTTGTCTTCCATATGCTTCCCGTaGTGCTCTATTAAGATCATTAAGGACTCCAAATCC +
Preference number: 6 (lower is better)
Translates to: SHDFYLSSICFP*CSIKIIKDSKS
Trigger: GGATTTGGAGTCCTTAATGATCTTAATAGAGCATCACGGGAAGCATATGGAAGACAAATAGAAGTCATGGCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021494.6
CDS GCA 72 bp TTGACTTATCTCAATGATATTGAGTTTGCGAGCATCTaGAATACATTCTTCCAGCTCCCTGTGTATGCTGTT +
Preference number: 6 (lower is better)
Translates to: LTYLNDIEFASI*NTFFQLPVYAV
Trigger: AACAGCATACACAGGGAGCTGGAAGAATGTATTGCAGATGCTCGCAAACTCAATATCATTGAGATAAGTCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021494.6
CDS CAA 72 bp TTATTGTTCGTGGCCTGTGCTTCTTCTTCCGGCTTCTaGATTGTTTCTTTAACATTTTGCAGATCCTGCTTA +
Preference number: 6 (lower is better)
Translates to: LLFVACASSSGF*IVSLTFCRSCL
Trigger: TAAGCAGGATCTGCAAAATGTTAAAGAAACAATCAAGAAGCCGGAAGAAGAAGCACAGGCCACGAACAATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021494.6
CDS CAA 90 bp ACAGAATATTCTCCACTGATTTATGACACATCTCTGAATTTCTCTTaGCCGATTTTTAGCCATGACTTCTATTTGTCTTCCATATGCTTC +
Preference number: 6 (lower is better)
Translates to: TEYSPLIYDTSLNFS*PIFSHDFYLSSICF
Trigger: GAAGCATATGGAAGACAAATAGAAGTCATGGCTAAAAATCGGCAAAGAGAAATTCAGAGATGTGTCATAAATCAGTGGAGAATATTCTGT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021494.6
CDS CAA 72 bp CTTATAATATGTCTCTTTTCTCTTATCGTCACAGGATaGCTTTGTCTCTTTAATGCGGATAGCCAGATATTC +
Preference number: 6 (lower is better)
Translates to: LIICLFSLIVTG*LCLFNADSQIF
Trigger: GAATATCTGGCTATCCGCATTAAAGAGACAAAGCAATCCTGTGACGATAAGAGAAAAGAGACATATTATAAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021494.6
CDS CAA 72 bp CCCAGAACTTCATTCATGCTCTTCAGCTCACTTATTTaGTTGGTTAGAAATTTTACTTCATTATTCATCGTC +
Preference number: 6 (lower is better)
Translates to: PRTSFMLFSSLI*LVRNFTSLFIV
Trigger: GACGATGAATAATGAAGTAAAATTTCTAACCAACAAAATAAGTGAGCTGAAGAGCATGAATGAAGTTCTGGG
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021494.6
CDS CAA 72 bp AATCTCCTTCTTTCTATGCTTCGTCTCTTCAAGCAATaGAAATCGCTTTTGCTCTACAATCTCAATTTGAAT +
Preference number: 6 (lower is better)
Translates to: NLLLSMLRLFKQ*KSLLLYNLNLN
Trigger: ATTCAAATTGAGATTGTAGAGCAAAAGCGATTTCAATTGCTTGAAGAGACGAAGCATAGAAAGAAGGAGATT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021494.6