RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CCDC173 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000070883

Ensembl transcript IDs: ENSMUST00000094942.4

Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp CCCCAGTGGCATCAGTTGCCTGATAGCTTGGCCTTATCCCACCTCTaGCTACAAAGGGTGGTCCACGTCCACCTCCCACTCCTTCCTGCA +
Preference number: 5 (lower is better)
Translates to: PQWHQLPDSLALSHL*LQRVVHVHLPLLPA
Trigger: TGCAGGAAGGAGTGGGAGGTGGACGTGGACCACCCTTTGTAGGCAGAGGTGGGATAAGGCCAAGCTATCAGGCAACTGATGCCACTGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094942.4
CDS CCA 90 bp AAAACAAGGGAGCTGGACCCCAGTGGCATCAGTTGCCTGATAGCTTaGCCTTATCCCACCTCTGCCTACAAAGGGTGGTCCACGTCCACC +
Preference number: 5 (lower is better)
Translates to: KTRELDPSGISCLIA*PYPTSAYKGWSTST
Trigger: GGTGGACGTGGACCACCCTTTGTAGGCAGAGGTGGGATAAGGCCAAGCTATCAGGCAACTGATGCCACTGGGGTCCAGCTCCCTTGTTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094942.4
CDS TCA 90 bp CTGCTCTTTCTGCACGAAGGACTGCTGCTTCTCTTGTCAACCTGTTaGGGCTATCCCGGATCCTCTCCCACTCAGCGTGTGGGATTATGG +
Preference number: 5 (lower is better)
Translates to: LLFLHEGLLLLLSTC*GYPGSSPTQRVGLW
Trigger: CCATAATCCCACACGCTGAGTGGGAGAGGATCCGGGATAGCCTCAACAGGTTGACAAGAGAAGCAGCAGTCCTTCGTGCAGAAAGAGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094942.4
CDS TCA 90 bp AATCTGGACATCACGCTCTTTCATAACTCTGCTGAGAAGAAGTCCTaGGTGAAAGCGCTTCACTCGCTCCGTCTGGTGAAACTGGCACTG +
Preference number: 5 (lower is better)
Translates to: NLDITLFHNSAEKKS*VKALHSLRLVKLAL
Trigger: CAGTGCCAGTTTCACCAGACGGAGCGAGTGAAGCGCTTTCACTCAGGACTTCTTCTCAGCAGAGTTATGAAAGAGCGTGATGTCCAGATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094942.4
CDS GCA 90 bp CAACTCTTGGGATTTCACATGCATTTTCTTCTTTGCTGCTCTTTCTaGACGAAGGACTGCTGCTTCTCTTGTCAACCTGTTGAGGCTATC +
Preference number: 5 (lower is better)
Translates to: QLLGFHMHFLLCCSF*TKDCCFSCQPVEAI
Trigger: GATAGCCTCAACAGGTTGACAAGAGAAGCAGCAGTCCTTCGTGCAGAAAGAGCAGCAAAGAAGAAAATGCATGTGAAATCCCAAGAGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094942.4
CDS CCA 90 bp AGTTTCTCTCTGGTCACTTTGAGGCTTTTCTCCTTTTCAAGCTCCTaGAAGATCTTATCTGCCTTCAAGACAGCCTGCAATTGTTCCTTA +
Preference number: 5 (lower is better)
Translates to: SFSLVTLRLFSFSSS*KILSAFKTACNCSL
Trigger: TAAGGAACAATTGCAGGCTGTCTTGAAGGCAGATAAGATCTTCCAGGAGCTTGAAAAGGAGAAAAGCCTCAAAGTGACCAGAGAGAAACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094942.4
CDS GCA 90 bp TCCTTTTCAAGCTCCTGGAAGATCTTATCTGCCTTCAAGACAGCCTaGAATTGTTCCTTAGCCTCTATTTTCCTTTGTCTTTCTTCTTCC +
Preference number: 5 (lower is better)
Translates to: SFSSSWKILSAFKTA*NCSLASIFLCLSSS
Trigger: GGAAGAAGAAAGACAAAGGAAAATAGAGGCTAAGGAACAATTGCAGGCTGTCTTGAAGGCAGATAAGATCTTCCAGGAGCTTGAAAAGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094942.4
CDS GCA 90 bp TGTCAAGAAGCAGTTTCCTGTTTGTATCTATCTCTTCCTGTTTCTTaGTTAGGTTTTTCTTCATCTCGATTTCATACAGCAAATTCTGCC +
Preference number: 5 (lower is better)
Translates to: CQEAVSCLYLSLPVS*LGFSSSRFHTANSA
Trigger: GGCAGAATTTGCTGTATGAAATCGAGATGAAGAAAAACCTAAGCAAGAAACAGGAAGAGATAGATACAAACAGGAAACTGCTTCTTGACA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000094942.4
CDS GCA 90 bp TTGGCTTTGATAAACTTTCTAATCTTTTCGTCTTCCTCCTCTTGCTaGTGTTGTTCTACAGCTCGGATGATGTTTTTATTGTGCATATTG +
Preference number: 5 (lower is better)
Translates to: LALINFLIFSSSSSC*CCSTARMMFLLCIL
Trigger: CAATATGCACAATAAAAACATCATCCGAGCTGTAGAACAACAGCAGCAAGAGGAGGAAGACGAAAAGATTAGAAAGTTTATCAAAGCCAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000094942.4
CDS TCA 90 bp TCCTTCCTGCACAGCTTTTACCATAGGGTAGGCGTATTTCTTTGTTaGTTCAGATTCAAAGTTAATTACTTCTCTAGCATACTTCTCAAA +
Preference number: 5 (lower is better)
Translates to: SFLHSFYHRVGVFLC*FRFKVNYFSSILLK
Trigger: TTTGAGAAGTATGCTAGAGAAGTAATTAACTTTGAATCTGAATCAACAAAGAAATACGCCTACCCTATGGTAAAAGCTGTGCAGGAAGGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094942.4
CDS CCA 72 bp GAGCTGGACCCCAGTGGCATCAGTTGCCTGATAGCTTaGCCTTATCCCACCTCTGCCTACAAAGGGTGGTCC +
Preference number: 6 (lower is better)
Translates to: ELDPSGISCLIA*PYPTSAYKGWS
Trigger: GGACCACCCTTTGTAGGCAGAGGTGGGATAAGGCCAAGCTATCAGGCAACTGATGCCACTGGGGTCCAGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094942.4
CDS CAA 72 bp GGAGCTGGACCCCAGTGGCATCAGTTGCCTGATAGCTaGGCCTTATCCCACCTCTGCCTACAAAGGGTGGTC +
Preference number: 6 (lower is better)
Translates to: GAGPQWHQLPDS*ALSHLCLQRVV
Trigger: GACCACCCTTTGTAGGCAGAGGTGGGATAAGGCCAAGCTATCAGGCAACTGATGCCACTGGGGTCCAGCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094942.4
CDS TCA 72 bp CTGCACGAAGGACTGCTGCTTCTCTTGTCAACCTGTTaGGGCTATCCCGGATCCTCTCCCACTCAGCGTGTG +
Preference number: 6 (lower is better)
Translates to: LHEGLLLLLSTC*GYPGSSPTQRV
Trigger: CACACGCTGAGTGGGAGAGGATCCGGGATAGCCTCAACAGGTTGACAAGAGAAGCAGCAGTCCTTCGTGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094942.4
CDS GCA 72 bp CATCAGTTGCCTGATAGCTTGGCCTTATCCCACCTCTaGCTACAAAGGGTGGTCCACGTCCACCTCCCACTC +
Preference number: 6 (lower is better)
Translates to: HQLPDSLALSHL*LQRVVHVHLPL
Trigger: GAGTGGGAGGTGGACGTGGACCACCCTTTGTAGGCAGAGGTGGGATAAGGCCAAGCTATCAGGCAACTGATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094942.4
CDS CCA 72 bp GTTGAGGCTATCCCGGATCCTCTCCCACTCAGCGTGTaGGATTATGGTGATCTGCTGGAGATCCACCTTGCT +
Preference number: 6 (lower is better)
Translates to: VEAIPDPLPLSV*DYGDLLEIHLA
Trigger: AGCAAGGTGGATCTCCAGCAGATCACCATAATCCCACACGCTGAGTGGGAGAGGATCCGGGATAGCCTCAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094942.4
CDS CAA 72 bp TCTGCACGAAGGACTGCTGCTTCTCTTGTCAACCTGTaGAGGCTATCCCGGATCCTCTCCCACTCAGCGTGT +
Preference number: 6 (lower is better)
Translates to: SARRTAASLVNL*RLSRILSHSAC
Trigger: ACACGCTGAGTGGGAGAGGATCCGGGATAGCCTCAACAGGTTGACAAGAGAAGCAGCAGTCCTTCGTGCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094942.4
CDS CAA 90 bp GCTGCTCTTTCTGCACGAAGGACTGCTGCTTCTCTTGTCAACCTGTaGAGGCTATCCCGGATCCTCTCCCACTCAGCGTGTGGGATTATG +
Preference number: 6 (lower is better)
Translates to: AALSARRTAASLVNL*RLSRILSHSACGIM
Trigger: CATAATCCCACACGCTGAGTGGGAGAGGATCCGGGATAGCCTCAACAGGTTGACAAGAGAAGCAGCAGTCCTTCGTGCAGAAAGAGCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094942.4
CDS GCA 72 bp TTTAAAACAAGGGAGCTGGACCCCAGTGGCATCAGTTaGCTGATAGCTTGGCCTTATCCCACCTCTGCCTAC +
Preference number: 6 (lower is better)
Translates to: FKTRELDPSGIS*LIAWPYPTSAY
Trigger: GTAGGCAGAGGTGGGATAAGGCCAAGCTATCAGGCAACTGATGCCACTGGGGTCCAGCTCCCTTGTTTTAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094942.4
CDS TCA 72 bp ATCACGCTCTTTCATAACTCTGCTGAGAAGAAGTCCTaGGTGAAAGCGCTTCACTCGCTCCGTCTGGTGAAA +
Preference number: 6 (lower is better)
Translates to: ITLFHNSAEKKS*VKALHSLRLVK
Trigger: TTTCACCAGACGGAGCGAGTGAAGCGCTTTCACTCAGGACTTCTTCTCAGCAGAGTTATGAAAGAGCGTGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094942.4
CDS GCA 72 bp GCTTTTCTCCTTTTCAAGCTCCTGGAAGATCTTATCTaGCTTCAAGACAGCCTGCAATTGTTCCTTAGCCTC +
Preference number: 6 (lower is better)
Translates to: AFLLFKLLEDLI*LQDSLQLFLSL
Trigger: GAGGCTAAGGAACAATTGCAGGCTGTCTTGAAGGCAGATAAGATCTTCCAGGAGCTTGAAAAGGAGAAAAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094942.4
CDS TCA 72 bp GAGCATCCTGAATTTCCAGTTTCTCTCTGGTCACTTTaGGGCTTTTCTCCTTTTCAAGCTCCTGGAAGATCT +
Preference number: 6 (lower is better)
Translates to: EHPEFPVSLWSL*GFSPFQAPGRS
Trigger: AGATCTTCCAGGAGCTTGAAAAGGAGAAAAGCCTCAAAGTGACCAGAGAGAAACTGGAAATTCAGGATGCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094942.4
CDS CAA 72 bp CTGGAAGATCTTATCTGCCTTCAAGACAGCCTGCAATaGTTCCTTAGCCTCTATTTTCCTTTGTCTTTCTTC +
Preference number: 6 (lower is better)
Translates to: LEDLICLQDSLQ*FLSLYFPLSFF
Trigger: GAAGAAAGACAAAGGAAAATAGAGGCTAAGGAACAATTGCAGGCTGTCTTGAAGGCAGATAAGATCTTCCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094942.4
CDS CAA 90 bp TCCTCCTCTTGCTGCTGTTGTTCTACAGCTCGGATGATGTTTTTATaGTGCATATTGTCAAGAAGCAGTTTCCTGTTTGTATCTATCTCT +
Preference number: 6 (lower is better)
Translates to: SSSCCCCSTARMMFL*CILSRSSFLFVSIS
Trigger: AGAGATAGATACAAACAGGAAACTGCTTCTTGACAATATGCACAATAAAAACATCATCCGAGCTGTAGAACAACAGCAGCAAGAGGAGGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000094942.4
CDS CAA 72 bp TGCTGCTGTTGTTCTACAGCTCGGATGATGTTTTTATaGTGCATATTGTCAAGAAGCAGTTTCCTGTTTGTA +
Preference number: 6 (lower is better)
Translates to: CCCCSTARMMFL*CILSRSSFLFV
Trigger: TACAAACAGGAAACTGCTTCTTGACAATATGCACAATAAAAACATCATCCGAGCTGTAGAACAACAGCAGCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000094942.4
CDS CAA 90 bp TTTGATAAACTTTCTAATCTTTTCGTCTTCCTCCTCTTGCTGCTGTaGTTCTACAGCTCGGATGATGTTTTTATTGTGCATATTGTCAAG +
Preference number: 6 (lower is better)
Translates to: FDKLSNLFVFLLLLL*FYSSDDVFIVHIVK
Trigger: CTTGACAATATGCACAATAAAAACATCATCCGAGCTGTAGAACAACAGCAGCAAGAGGAGGAAGACGAAAAGATTAGAAAGTTTATCAAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000094942.4
CDS TCA 72 bp CACAGCTTTTACCATAGGGTAGGCGTATTTCTTTGTTaGTTCAGATTCAAAGTTAATTACTTCTCTAGCATA +
Preference number: 6 (lower is better)
Translates to: HSFYHRVGVFLC*FRFKVNYFSSI
Trigger: TATGCTAGAGAAGTAATTAACTTTGAATCTGAATCAACAAAGAAATACGCCTACCCTATGGTAAAAGCTGTG
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094942.4