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Pregenerated sensors for CCDC172 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025090

Ensembl transcript IDs: ENSMUST00000069419.8, ENSMUST00000235305.2

Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp GTGGGGTGGCTCATGACTCAAGGAGTTACTGTCCTGGGGATCCTTTaGTGCCAGTGCCAACTCCAGGAGGTCTACTTCTGCTTGGAGAGC +
Preference number: 5 (lower is better)
Translates to: VGWLMTQGVTVLGIL*CQCQLQEVYFCLES
Trigger: GCTCTCCAAGCAGAAGTAGACCTCCTGGAGTTGGCACTGGCACCAAAGGATCCCCAGGACAGTAACTCCTTGAGTCATGAGCCACCCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069419.8
ENSMUST00000235305.2
CDS GCA 90 bp GGGTGGCTCATGACTCAAGGAGTTACTGTCCTGGGGATCCTTTGGTaGCAGTGCCAACTCCAGGAGGTCTACTTCTGCTTGGAGAGCTCT +
Preference number: 5 (lower is better)
Translates to: GWLMTQGVTVLGILW*QCQLQEVYFCLESS
Trigger: AGAGCTCTCCAAGCAGAAGTAGACCTCCTGGAGTTGGCACTGGCACCAAAGGATCCCCAGGACAGTAACTCCTTGAGTCATGAGCCACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069419.8
ENSMUST00000235305.2
CDS GCA 90 bp CTCATGACTCAAGGAGTTACTGTCCTGGGGATCCTTTGGTGCCAGTaGCAACTCCAGGAGGTCTACTTCTGCTTGGAGAGCTCTGTAGAC +
Preference number: 5 (lower is better)
Translates to: LMTQGVTVLGILWCQ*QLQEVYFCLESSVD
Trigger: GTCTACAGAGCTCTCCAAGCAGAAGTAGACCTCCTGGAGTTGGCACTGGCACCAAAGGATCCCCAGGACAGTAACTCCTTGAGTCATGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069419.8
ENSMUST00000235305.2
CDS GCA 90 bp CTGGGGATCCTTTGGTGCCAGTGCCAACTCCAGGAGGTCTACTTCTaGTTGGAGAGCTCTGTAGACACTTTCCATGTCTTCTGCTTTATA +
Preference number: 5 (lower is better)
Translates to: LGILWCQCQLQEVYF*LESSVDTFHVFCFI
Trigger: TATAAAGCAGAAGACATGGAAAGTGTCTACAGAGCTCTCCAAGCAGAAGTAGACCTCCTGGAGTTGGCACTGGCACCAAAGGATCCCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069419.8
ENSMUST00000235305.2
CDS CCA 90 bp CGGTTACGTTCCACCGACTTCATTTCCCTTCTCAAAACATCTGCCTaGCTGTCTAAGTCAGCCATTTCCATCTCGATATTTTCTTTCATC +
Preference number: 5 (lower is better)
Translates to: RLRSTDFISLLKTSA*LSKSAISISIFSFI
Trigger: GATGAAAGAAAATATCGAGATGGAAATGGCTGACTTAGACAGCCAGGCAGATGTTTTGAGAAGGGAAATGAAGTCGGTGGAACGTAACCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069419.8
CDS CAA 90 bp TGTGGGGTGGCTCATGACTCAAGGAGTTACTGTCCTGGGGATCCTTaGGTGCCAGTGCCAACTCCAGGAGGTCTACTTCTGCTTGGAGAG +
Preference number: 6 (lower is better)
Translates to: CGVAHDSRSYCPGDP*VPVPTPGGLLLLGE
Trigger: CTCTCCAAGCAGAAGTAGACCTCCTGGAGTTGGCACTGGCACCAAAGGATCCCCAGGACAGTAACTCCTTGAGTCATGAGCCACCCCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069419.8
ENSMUST00000235305.2
CDS GCA 72 bp CAAGGAGTTACTGTCCTGGGGATCCTTTGGTGCCAGTaGCAACTCCAGGAGGTCTACTTCTGCTTGGAGAGC +
Preference number: 6 (lower is better)
Translates to: QGVTVLGILWCQ*QLQEVYFCLES
Trigger: GCTCTCCAAGCAGAAGTAGACCTCCTGGAGTTGGCACTGGCACCAAAGGATCCCCAGGACAGTAACTCCTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069419.8
ENSMUST00000235305.2
CDS CCA 72 bp CTCATGACTCAAGGAGTTACTGTCCTGGGGATCCTTTaGTGCCAGTGCCAACTCCAGGAGGTCTACTTCTGC +
Preference number: 6 (lower is better)
Translates to: LMTQGVTVLGIL*CQCQLQEVYFC
Trigger: GCAGAAGTAGACCTCCTGGAGTTGGCACTGGCACCAAAGGATCCCCAGGACAGTAACTCCTTGAGTCATGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069419.8
ENSMUST00000235305.2
CDS CAA 72 bp GCTCATGACTCAAGGAGTTACTGTCCTGGGGATCCTTaGGTGCCAGTGCCAACTCCAGGAGGTCTACTTCTG +
Preference number: 6 (lower is better)
Translates to: AHDSRSYCPGDP*VPVPTPGGLLL
Trigger: CAGAAGTAGACCTCCTGGAGTTGGCACTGGCACCAAAGGATCCCCAGGACAGTAACTCCTTGAGTCATGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069419.8
ENSMUST00000235305.2
CDS CAA 72 bp TGGTGCCAGTGCCAACTCCAGGAGGTCTACTTCTGCTaGGAGAGCTCTGTAGACACTTTCCATGTCTTCTGC +
Preference number: 6 (lower is better)
Translates to: WCQCQLQEVYFC*ESSVDTFHVFC
Trigger: GCAGAAGACATGGAAAGTGTCTACAGAGCTCTCCAAGCAGAAGTAGACCTCCTGGAGTTGGCACTGGCACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069419.8
ENSMUST00000235305.2
CDS CAA 90 bp GGGATCCTTTGGTGCCAGTGCCAACTCCAGGAGGTCTACTTCTGCTaGGAGAGCTCTGTAGACACTTTCCATGTCTTCTGCTTTATACAG +
Preference number: 6 (lower is better)
Translates to: GILWCQCQLQEVYFC*ESSVDTFHVFCFIQ
Trigger: CTGTATAAAGCAGAAGACATGGAAAGTGTCTACAGAGCTCTCCAAGCAGAAGTAGACCTCCTGGAGTTGGCACTGGCACCAAAGGATCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069419.8
ENSMUST00000235305.2
CDS CCA 72 bp TCCTCTGTGGTTTTATTCTTTATAGCCTCGCAGGCTTaGAGCAGTGTGTCCCGCTCGCTGATAATCTCACTG +
Preference number: 6 (lower is better)
Translates to: SSVVLFFIASQA*SSVSRSLIISL
Trigger: CAGTGAGATTATCAGCGAGCGGGACACACTGCTCCAAGCCTGCGAGGCTATAAAGAATAAAACCACAGAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069419.8
ENSMUST00000235305.2
CDS CCA 72 bp TCCACCGACTTCATTTCCCTTCTCAAAACATCTGCCTaGCTGTCTAAGTCAGCCATTTCCATCTCGATATTT +
Preference number: 6 (lower is better)
Translates to: STDFISLLKTSA*LSKSAISISIF
Trigger: AAATATCGAGATGGAAATGGCTGACTTAGACAGCCAGGCAGATGTTTTGAGAAGGGAAATGAAGTCGGTGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069419.8