RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CCDC160 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000073207

Ensembl transcript IDs: ENSMUST00000101588.2

Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AATGCCTTCATCAGAAAGAGAAACAGCTGCTTTGAAGTCAGCATCTaGATAATTGGTAGGTGCTCTGATTCACCAGAAGTAAAGATTACA +
Preference number: 1 (lower is better)
Translates to: NAFIRKRNSCFEVSI*IIGRCSDSPEVKIT
Trigger: TGTAATCTTTACTTCTGGTGAATCAGAGCACCTACCAATTATGCAGATGCTGACTTCAAAGCAGCTGTTTCTCTTTCTGATGAAGGCATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
3UTR GCA 90 bp AAGAGAAACAGCTGCTTTGAAGTCAGCATCTGCATAATTGGTAGGTaGTCTGATTCACCAGAAGTAAAGATTACACGCTTTCAAATACAT +
Preference number: 1 (lower is better)
Translates to: KRNSCFEVSICIIGR*SDSPEVKITRFQIH
Trigger: ATGTATTTGAAAGCGTGTAATCTTTACTTCTGGTGAATCAGAGCACCTACCAATTATGCAGATGCTGACTTCAAAGCAGCTGTTTCTCTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
3UTR-3UTR GCA 90 bp ACACAGTGCTGCTCATTCAGTCATCTACGATCTAGTGAATCAGTTTGGGTTGTTTGCATAATTGGTAGGTaGTCTGATTCACCAGAAGTA +
Preference number: 2 (lower is better)
Translates to: TQCCSFSHLRSSESVWVVCIIGR*SDSPEV
Trigger: TACTTCTGGTGAATCAGAGCACCTACCAATTATGCA...AACAACCCAAACTGATTCACTAGATCGTAGATGACTGAATGAGCAGCACTGTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
3UTR-3UTR TCA 90 bp TTATTGTTCACATTGATTACCACAGATGGGAAAACATTGATGTGCCAAGGACATGAGAAACAGCTGCTTTaGAGTCAGCATCTGCATAAT +
Preference number: 2 (lower is better)
Translates to: LLFTLITTDGKTLMCQGHEKQLL*SQHLHN
Trigger: ATTATGCAGATGCTGACTTCAAAGCAGCTGTTTCTC...ATGTCCTTGGCACATCAATGTTTTCCCATCTGTGGTAATCAATGTGAACAATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
3UTR-3UTR GCA 90 bp TTATTGTTCACATTGATTACCACAGATGGGAAAACATTGATGTGCCAAGGACATAGAAAGAGAAACAGCTaGTTTGAAGTCAGCATCTGC +
Preference number: 2 (lower is better)
Translates to: LLFTLITTDGKTLMCQGHRKRNS*FEVSIC
Trigger: GCAGATGCTGACTTCAAAGCAGCTGTTTCTCTTTCT...ATGTCCTTGGCACATCAATGTTTTCCCATCTGTGGTAATCAATGTGAACAATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
3UTR GCA 72 bp TGTGCCAAGGACATGGCTAACAAGGTCACACAGTGCTaGTCATTCAGTCATCTACGATCTAGTGAATCAGTT +
Preference number: 3 (lower is better)
Translates to: CAKDMANKVTQC*SFSHLRSSESV
Trigger: AACTGATTCACTAGATCGTAGATGACTGAATGAGCAGCACTGTGTGACCTTGTTAGCCATGTCCTTGGCACA
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
3UTR GCA 72 bp GAGTCTCACAATGCCTTCATCAGAAAGAGAAACAGCTaGTTTGAAGTCAGCATCTGCATAATTGGTAGGTGC +
Preference number: 3 (lower is better)
Translates to: ESHNAFIRKRNS*FEVSICIIGRC
Trigger: GCACCTACCAATTATGCAGATGCTGACTTCAAAGCAGCTGTTTCTCTTTCTGATGAAGGCATTGTGAGACTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
3UTR GCA 72 bp AGCTGCTTTGAAGTCAGCATCTGCATAATTGGTAGGTaGTCTGATTCACCAGAAGTAAAGATTACACGCTTT +
Preference number: 3 (lower is better)
Translates to: SCFEVSICIIGR*SDSPEVKITRF
Trigger: AAAGCGTGTAATCTTTACTTCTGGTGAATCAGAGCACCTACCAATTATGCAGATGCTGACTTCAAAGCAGCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
3UTR GCA 72 bp ATCAGAAAGAGAAACAGCTGCTTTGAAGTCAGCATCTaGATAATTGGTAGGTGCTCTGATTCACCAGAAGTA +
Preference number: 3 (lower is better)
Translates to: IRKRNSCFEVSI*IIGRCSDSPEV
Trigger: TACTTCTGGTGAATCAGAGCACCTACCAATTATGCAGATGCTGACTTCAAAGCAGCTGTTTCTCTTTCTGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS-3UTR TCA 90 bp GAAAACATTGATGTGCCAAGGACATGGCTAACAAGGTCACACAGTGCTGCTCATTCCATTTCTTCCTGGTaGCTTGTGTGGCGGCCGGCA +
Preference number: 4 (lower is better)
Translates to: ENIDVPRTWLTRSHSAAHSISSW*LVWRPA
Trigger: TGCCGGCCGCCACACAAGTCACCAGGAAGAAATGGA...ATGAGCAGCACTGTGTGACCTTGTTAGCCATGTCCTTGGCACATCAATGTTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS-3UTR TCA 90 bp GTCACACAGTGCTGCTCATTCAGTCATCTACGATCTAGTGAATCAGTTTGGGTTCTCTCAGCTCATTCTTaGTGGCACCCAGCTCCAAGC +
Preference number: 4 (lower is better)
Translates to: VTQCCSFSHLRSSESVWVLSAHS*WHPAPS
Trigger: GCTTGGAGCTGGGTGCCATCAAGAATGAGCTGAGAG...AACCCAAACTGATTCACTAGATCGTAGATGACTGAATGAGCAGCACTGTGTGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS-3UTR CCA 90 bp ACACAGTGCTGCTCATTCAGTCATCTACGATCTAGTGAATCAGTTTGGGTTGTTTGTTCAGAGAGAGGCTaGGGTGGAGCAGCAGCTTCC +
Preference number: 4 (lower is better)
Translates to: TQCCSFSHLRSSESVWVVCSERG*GGAAAS
Trigger: GGAAGCTGCTGCTCCACCCCAGCCTCTCTCTGAACA...AACAACCCAAACTGATTCACTAGATCGTAGATGACTGAATGAGCAGCACTGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS-3UTR CCA 90 bp GCCTTCATCAGAAAGAGAAACAGCTGCTTTGAAGTCAGCATCTGCATAATTGGTAGAGAGAGGCTGGGGTaGAGCAGCAGCTTCCTGAAA +
Preference number: 4 (lower is better)
Translates to: AFIRKRNSCFEVSICIIGRERLG*SSSFLK
Trigger: TTTCAGGAAGCTGCTGCTCCACCCCAGCCTCTCTCT...ACCAATTATGCAGATGCTGACTTCAAAGCAGCTGTTTCTCTTTCTGATGAAGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS-3UTR TCA 90 bp AAGGTCACACAGTGCTGCTCATTCAGTCATCTACGATCTAGTGAATCAGTTTGGGCTCTCCCTTCTGTGTaGACTTTCCTTCGTTGCATC +
Preference number: 4 (lower is better)
Translates to: KVTQCCSFSHLRSSESVWALPSV*TFLRCI
Trigger: GATGCAACGAAGGAAAGTTCACACAGAAGGGAGAGC...CCAAACTGATTCACTAGATCGTAGATGACTGAATGAGCAGCACTGTGTGACCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS-3UTR CCA 90 bp GCCTTCATCAGAAAGAGAAACAGCTGCTTTGAAGTCAGCATCTGCATAATTGGTGTTCCCGGTCTTTCTTaGAAGCACCTGTCCCTGGTT +
Preference number: 4 (lower is better)
Translates to: AFIRKRNSCFEVSICIIGVPGLS*KHLSLV
Trigger: AACCAGGGACAGGTGCTTCCAAGAAAGACCGGGAAC...ACCAATTATGCAGATGCTGACTTCAAAGCAGCTGTTTCTCTTTCTGATGAAGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS-3UTR TCA 90 bp GTCACACAGTGCTGCTCATTCAGTCATCTACGATCTAGTGAATCAGTTTGGGTTGGAGCAGCAGCTTCCTaGAAATCGTGCTCGTTTAAA +
Preference number: 4 (lower is better)
Translates to: VTQCCSFSHLRSSESVWVGAAAS*KSCSFK
Trigger: TTTAAACGAGCACGATTTTCAGGAAGCTGCTGCTCC...AACCCAAACTGATTCACTAGATCGTAGATGACTGAATGAGCAGCACTGTGTGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS-3UTR TCA 90 bp AAGGTCACACAGTGCTGCTCATTCAGTCATCTACGATCTAGTGAATCAGTTTGGCCTGTCCCTGGTTCTTaGAAATTGACAGCTTTCACG +
Preference number: 4 (lower is better)
Translates to: KVTQCCSFSHLRSSESVWPVPGS*KLTAFT
Trigger: CGTGAAAGCTGTCAATTTTCAAGAACCAGGGACAGG...CCAAACTGATTCACTAGATCGTAGATGACTGAATGAGCAGCACTGTGTGACCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS-3UTR GCA 90 bp TTATTGTTCACATTGATTACCACAGATGGGAAAACATTGATGTGCCAAGGACATGCACCTCCAGAGCCCTaGTGTTCTTCACCCTTAGGG +
Preference number: 4 (lower is better)
Translates to: LLFTLITTDGKTLMCQGHAPPEP*CSSPLG
Trigger: CCCTAAGGGTGAAGAACAGCAGGGCTCTGGAGGTGC...ATGTCCTTGGCACATCAATGTTTTCCCATCTGTGGTAATCAATGTGAACAATAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS-3UTR CCA 90 bp GTCACACAGTGCTGCTCATTCAGTCATCTACGATCTAGTGAATCAGTTTGGGTTGGAAGCACCTGTCCCTaGTTCTTGAAAATTGACAGC +
Preference number: 4 (lower is better)
Translates to: VTQCCSFSHLRSSESVWVGSTCP*FLKIDS
Trigger: GCTGTCAATTTTCAAGAACCAGGGACAGGTGCTTCC...AACCCAAACTGATTCACTAGATCGTAGATGACTGAATGAGCAGCACTGTGTGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS-3UTR TCA 90 bp GCCTTCATCAGAAAGAGAAACAGCTGCTTTGAAGTCAGCATCTGCATAATTGGTGATGCTTCAGTTTCCTaGCAGCGTCTTTCAAGTTCC +
Preference number: 4 (lower is better)
Translates to: AFIRKRNSCFEVSICIIGDASVS*QRLSSS
Trigger: GGAACTTGAAAGACGCTGTCAGGAAACTGAAGCATC...ACCAATTATGCAGATGCTGACTTCAAAGCAGCTGTTTCTCTTTCTGATGAAGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS-3UTR TCA 90 bp ACACAGTGCTGCTCATTCAGTCATCTACGATCTAGTGAATCAGTTTGGGTTGTTCTGGTTCTTGAAAATTaGCAGCTTTCACGGAGGCTT +
Preference number: 4 (lower is better)
Translates to: TQCCSFSHLRSSESVWVVLVLEN*QLSRRL
Trigger: AAGCCTCCGTGAAAGCTGTCAATTTTCAAGAACCAG...AACAACCCAAACTGATTCACTAGATCGTAGATGACTGAATGAGCAGCACTGTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS-3UTR GCA 90 bp GAAAACATTGATGTGCCAAGGACATGGCTAACAAGGTCACACAGTGCTGCTCATATCTTGTTCTCCTTCTaGTATCTGGGAAGAATAGTC +
Preference number: 4 (lower is better)
Translates to: ENIDVPRTWLTRSHSAAHILFSF*YLGRIV
Trigger: GACTATTCTTCCCAGATAGCAGAAGGAGAACAAGAT...ATGAGCAGCACTGTGTGACCTTGTTAGCCATGTCCTTGGCACATCAATGTTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS-3UTR TCA 90 bp AGGTGCTCTGATTCACCAGAAGTAAAGATTACACGCTTTCAAATACATTTTAGCGGCTCAACCTGTACATaGCTTCTTTGGCTTGCTGGA +
Preference number: 4 (lower is better)
Translates to: RCSDSPEVKITRFQIHFSGSTCT*LLWLAG
Trigger: TCCAGCAAGCCAAAGAAGTCATGTACAGGTTGAGCC...GCTAAAATGTATTTGAAAGCGTGTAATCTTTACTTCTGGTGAATCAGAGCACCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS-3UTR TCA 90 bp AAGGTCACACAGTGCTGCTCATTCAGTCATCTACGATCTAGTGAATCAGTTTGGACTTCATTTCTTCTCTaGGGAGCGCAGTATTTAGTT +
Preference number: 4 (lower is better)
Translates to: KVTQCCSFSHLRSSESVWTSFLL*GAQYLV
Trigger: AACTAAATACTGCGCTCCTCAGAGAAGAAATGAAGT...CCAAACTGATTCACTAGATCGTAGATGACTGAATGAGCAGCACTGTGTGACCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS-3UTR GCA 90 bp ACACAGTGCTGCTCATTCAGTCATCTACGATCTAGTGAATCAGTTTGGGTTGTTATGACTTCTTTGGCTTaGTGGAGCTCTTCAGTTAAG +
Preference number: 4 (lower is better)
Translates to: TQCCSFSHLRSSESVWVVMTSLA*WSSSVK
Trigger: CTTAACTGAAGAGCTCCAGCAAGCCAAAGAAGTCAT...AACAACCCAAACTGATTCACTAGATCGTAGATGACTGAATGAGCAGCACTGTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS-3UTR CCA 90 bp GTCACACAGTGCTGCTCATTCAGTCATCTACGATCTAGTGAATCAGTTTGGGTTACTTCTTTGGCTTGCTaGAGCTCTTCAGTTAAGTTT +
Preference number: 4 (lower is better)
Translates to: VTQCCSFSHLRSSESVWVTSLAC*SSSVKF
Trigger: AAACTTAACTGAAGAGCTCCAGCAAGCCAAAGAAGT...AACCCAAACTGATTCACTAGATCGTAGATGACTGAATGAGCAGCACTGTGTGAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS-3UTR TCA 90 bp TTATTGTTCACATTGATTACCACAGATGGGAAAACATTGATGTGCCAAGGACATAATTTATTTCCTTCTTaGGTGTTCCTAACGGAGAAG +
Preference number: 4 (lower is better)
Translates to: LLFTLITTDGKTLMCQGHNLFPS*VFLTEK
Trigger: CTTCTCCGTTAGGAACACTCAAGAAGGAAATAAATT...ATGTCCTTGGCACATCAATGTTTTCCCATCTGTGGTAATCAATGTGAACAATAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS-3UTR TCA 90 bp TTATTGTTCACATTGATTACCACAGATGGGAAAACATTGATGTGCCAAGGACATATTTGCATCATTCTTTaGCACGTTCATTCTTCTCTC +
Preference number: 4 (lower is better)
Translates to: LLFTLITTDGKTLMCQGHICIIL*HVHSSL
Trigger: GAGAGAAGAATGAACGTGTCAAAGAATGATGCAAAT...ATGTCCTTGGCACATCAATGTTTTCCCATCTGTGGTAATCAATGTGAACAATAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS-3UTR CCA 90 bp AGTCATCTACGATCTAGTGAATCAGTTTGGGTTGTTTGGTTGTTTTGTGTATATCCCAGAAGGCAGAATTaGTATTTGCATCATTCTTTG +
Preference number: 4 (lower is better)
Translates to: SHLRSSESVWVVWLFCVYPRRQN*YLHHSL
Trigger: CAAAGAATGATGCAAATACCAATTCTGCCTTCTGGG...ATATACACAAAACAACCAAACAACCCAAACTGATTCACTAGATCGTAGATGACT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS-3UTR TCA 90 bp AGTCATCTACGATCTAGTGAATCAGTTTGGGTTGTTTGGTTGTTTTGTGTATATGTATTTAGTTCAGTTTaGTGCTTCAGTTTCCTGACA +
Preference number: 4 (lower is better)
Translates to: SHLRSSESVWVVWLFCVYVFSSV*CFSFLT
Trigger: TGTCAGGAAACTGAAGCATCAAACTGAACTAAATAC...ATATACACAAAACAACCAAACAACCCAAACTGATTCACTAGATCGTAGATGACT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS TCA 90 bp GTAGGCGGAGTTTTGGAGGCATTGCTTCTGTCCATTTCTTCCTGGTaGCTTGTGTGGCGGCCGGCAATTTCTTCTTATTCCACGCGGAGG +
Preference number: 5 (lower is better)
Translates to: VGGVLEALLLSISSW*LVWRPAISSYSTRR
Trigger: CCTCCGCGTGGAATAAGAAGAAATTGCCGGCCGCCACACAAGTCACCAGGAAGAAATGGACAGAAGCAATGCCTCCAAAACTCCGCCTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS TCA 90 bp TGCTGTTCTTCACCCTTAGGGTCTTCTCGACTCTCAGCTCATTCTTaGTGGCACCCAGCTCCAAGCGGATCTTTTCCATCTCCAGCTCGT +
Preference number: 5 (lower is better)
Translates to: CCSSPLGSSRLSAHS*WHPAPSGSFPSPAR
Trigger: ACGAGCTGGAGATGGAAAAGATCCGCTTGGAGCTGGGTGCCATCAAGAATGAGCTGAGAGTCGAGAAGACCCTAAGGGTGAAGAACAGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS GCA 90 bp ACCTTACCACTGAAGCAACGTGTCTTCCAAGCACCTCCAGAGCCCTaGTGTTCTTCACCCTTAGGGTCTTCTCGACTCTCAGCTCATTCT +
Preference number: 5 (lower is better)
Translates to: TLPLKQRVFQAPPEP*CSSPLGSSRLSAHS
Trigger: AGAATGAGCTGAGAGTCGAGAAGACCCTAAGGGTGAAGAACAGCAGGGCTCTGGAGGTGCTTGGAAGACACGTTGCTTCAGTGGTAAGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS TCA 90 bp TTTCGGCGTTTTCAAAGTCCCGTTCAATCTCCCGGCATTTCAGGCTaGGTTCTCCCAGCTCTTCGTTCAGAAGGTGTAGGCGGAGTTTTG +
Preference number: 5 (lower is better)
Translates to: FRRFQSPVQSPGISG*VLPALRSEGVGGVL
Trigger: CAAAACTCCGCCTACACCTTCTGAACGAAGAGCTGGGAGAACTCAGCCTGAAATGCCGGGAGATTGAACGGGACTTTGAAAACGCCGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS-3UTR CAA 90 bp AAGGTCACACAGTGCTGCTCATTCAGTCATCTACGATCTAGTGAATCAGTTTGGGGTGTAGGCGGAGTTTaGGAGGCATTGCTTCTGTCC +
Preference number: 5 (lower is better)
Translates to: KVTQCCSFSHLRSSESVWGVGGV*EALLLS
Trigger: GGACAGAAGCAATGCCTCCAAAACTCCGCCTACACC...CCAAACTGATTCACTAGATCGTAGATGACTGAATGAGCAGCACTGTGTGACCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS-3UTR CAA 90 bp ACACAGTGCTGCTCATTCAGTCATCTACGATCTAGTGAATCAGTTTGGGTTGTTAGTTCCCGGTCTTTCTaGGAAGCACCTGTCCCTGGT +
Preference number: 5 (lower is better)
Translates to: TQCCSFSHLRSSESVWVVSSRSF*EAPVPG
Trigger: ACCAGGGACAGGTGCTTCCAAGAAAGACCGGGAACT...AACAACCCAAACTGATTCACTAGATCGTAGATGACTGAATGAGCAGCACTGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS-3UTR CAA 90 bp GTCACACAGTGCTGCTCATTCAGTCATCTACGATCTAGTGAATCAGTTTGGGTTACTCTCAGCTCATTCTaGATGGCACCCAGCTCCAAG +
Preference number: 5 (lower is better)
Translates to: VTQCCSFSHLRSSESVWVTLSSF*MAPSSK
Trigger: CTTGGAGCTGGGTGCCATCAAGAATGAGCTGAGAGT...AACCCAAACTGATTCACTAGATCGTAGATGACTGAATGAGCAGCACTGTGTGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS-3UTR CAA 90 bp AGGTGCTCTGATTCACCAGAAGTAAAGATTACACGCTTTCAAATACATTTTAGCACTCTCCCCATCCTCTaGTGGTTGTCTGCTGATGAC +
Preference number: 5 (lower is better)
Translates to: RCSDSPEVKITRFQIHFSTLPIL*WLSADD
Trigger: GTCATCAGCAGACAACCACAAGAGGATGGGGAGAGT...GCTAAAATGTATTTGAAAGCGTGTAATCTTTACTTCTGGTGAATCAGAGCACCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS-3UTR CAA 90 bp GCCTTCATCAGAAAGAGAAACAGCTGCTTTGAAGTCAGCATCTGCATAATTGGTACCTGTCCCTGGTTCTaGAAAATTGACAGCTTTCAC +
Preference number: 5 (lower is better)
Translates to: AFIRKRNSCFEVSICIIGTCPWF*KIDSFH
Trigger: GTGAAAGCTGTCAATTTTCAAGAACCAGGGACAGGT...ACCAATTATGCAGATGCTGACTTCAAAGCAGCTGTTTCTCTTTCTGATGAAGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS-3UTR CAA 90 bp GTCACACAGTGCTGCTCATTCAGTCATCTACGATCTAGTGAATCAGTTTGGGTTAGGCAGAATTGGTATTaGCATCATTCTTTGACACGT +
Preference number: 5 (lower is better)
Translates to: VTQCCSFSHLRSSESVWVRQNWY*HHSLTR
Trigger: ACGTGTCAAAGAATGATGCAAATACCAATTCTGCCT...AACCCAAACTGATTCACTAGATCGTAGATGACTGAATGAGCAGCACTGTGTGAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS TCA 90 bp AACAACTTCATTTCTTCTCTGAGGAGCGCAGTATTTAGTTCAGTTTaGTGCTTCAGTTTCCTGACAGCGTCTTTCAAGTTCCTGTTCTCT +
Preference number: 5 (lower is better)
Translates to: NNFISSLRSAVFSSV*CFSFLTASFKFLFS
Trigger: AGAGAACAGGAACTTGAAAGACGCTGTCAGGAAACTGAAGCATCAAACTGAACTAAATACTGCGCTCCTCAGAGAAGAAATGAAGTTGTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS CAA 90 bp GTGTTCCTAACGGAGAAGTTAGACACTCTCCCCATCCTCTTGTGGTaGTCTGCTGATGACTGTTCAGAGAGAGGCTGGGGTGGAGCAGCA +
Preference number: 6 (lower is better)
Translates to: VFLTEKLDTLPILLW*SADDCSERGWGGAA
Trigger: TGCTGCTCCACCCCAGCCTCTCTCTGAACAGTCATCAGCAGACAACCACAAGAGGATGGGGAGAGTGTCTAACTTCTCCGTTAGGAACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS CAA 90 bp CTGCTGTTCTTCACCCTTAGGGTCTTCTCGACTCTCAGCTCATTCTaGATGGCACCCAGCTCCAAGCGGATCTTTTCCATCTCCAGCTCG +
Preference number: 6 (lower is better)
Translates to: LLFFTLRVFSTLSSF*MAPSSKRIFSISSS
Trigger: CGAGCTGGAGATGGAAAAGATCCGCTTGGAGCTGGGTGCCATCAAGAATGAGCTGAGAGTCGAGAAGACCCTAAGGGTGAAGAACAGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS CAA 72 bp ACGGAGAAGTTAGACACTCTCCCCATCCTCTTGTGGTaGTCTGCTGATGACTGTTCAGAGAGAGGCTGGGGT +
Preference number: 6 (lower is better)
Translates to: TEKLDTLPILLW*SADDCSERGWG
Trigger: ACCCCAGCCTCTCTCTGAACAGTCATCAGCAGACAACCACAAGAGGATGGGGAGAGTGTCTAACTTCTCCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS CAA 72 bp CGGAGGCGCTCTCCCTTCTGTGTGAACTTTCCTTCGTaGCATCATCCAAATGAAGAGAGTCCCAGAAGGCAG +
Preference number: 6 (lower is better)
Translates to: RRRSPFCVNFPS*HHPNEESPRRQ
Trigger: CTGCCTTCTGGGACTCTCTTCATTTGGATGATGCAACGAAGGAAAGTTCACACAGAAGGGAGAGCGCCTCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS TCA 72 bp TTTCAAAGTCCCGTTCAATCTCCCGGCATTTCAGGCTaGGTTCTCCCAGCTCTTCGTTCAGAAGGTGTAGGC +
Preference number: 6 (lower is better)
Translates to: FQSPVQSPGISG*VLPALRSEGVG
Trigger: GCCTACACCTTCTGAACGAAGAGCTGGGAGAACTCAGCCTGAAATGCCGGGAGATTGAACGGGACTTTGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS TCA 72 bp TCACCCTTAGGGTCTTCTCGACTCTCAGCTCATTCTTaGTGGCACCCAGCTCCAAGCGGATCTTTTCCATCT +
Preference number: 6 (lower is better)
Translates to: SPLGSSRLSAHS*WHPAPSGSFPS
Trigger: AGATGGAAAAGATCCGCTTGGAGCTGGGTGCCATCAAGAATGAGCTGAGAGTCGAGAAGACCCTAAGGGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS CCA 72 bp TTGCAGTTCCCGGTCTTTCTTGGAAGCACCTGTCCCTaGTTCTTGAAAATTGACAGCTTTCACGGAGGCTTC +
Preference number: 6 (lower is better)
Translates to: LQFPVFLGSTCP*FLKIDSFHGGF
Trigger: GAAGCCTCCGTGAAAGCTGTCAATTTTCAAGAACCAGGGACAGGTGCTTCCAAGAAAGACCGGGAACTGCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS CAA 90 bp TATTCCACGCGGAGGCGCTCTCCCTTCTGTGTGAACTTTCCTTCGTaGCATCATCCAAATGAAGAGAGTCCCAGAAGGCAGAATTGGTAT +
Preference number: 6 (lower is better)
Translates to: YSTRRRSPFCVNFPS*HHPNEESPRRQNWY
Trigger: ATACCAATTCTGCCTTCTGGGACTCTCTTCATTTGGATGATGCAACGAAGGAAAGTTCACACAGAAGGGAGAGCGCCTCCGCGTGGAATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS TCA 72 bp CTTCTTATTCCACGCGGAGGCGCTCTCCCTTCTGTGTaGACTTTCCTTCGTTGCATCATCCAAATGAAGAGA +
Preference number: 6 (lower is better)
Translates to: LLIPRGGALPSV*TFLRCIIQMKR
Trigger: TCTCTTCATTTGGATGATGCAACGAAGGAAAGTTCACACAGAAGGGAGAGCGCCTCCGCGTGGAATAAGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS TCA 72 bp GTTTTGGAGGCATTGCTTCTGTCCATTTCTTCCTGGTaGCTTGTGTGGCGGCCGGCAATTTCTTCTTATTCC +
Preference number: 6 (lower is better)
Translates to: VLEALLLSISSW*LVWRPAISSYS
Trigger: GGAATAAGAAGAAATTGCCGGCCGCCACACAAGTCACCAGGAAGAAATGGACAGAAGCAATGCCTCCAAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS TCA 72 bp TCCCGGTCTTTCTTGGAAGCACCTGTCCCTGGTTCTTaGAAATTGACAGCTTTCACGGAGGCTTCCTTTCTA +
Preference number: 6 (lower is better)
Translates to: SRSFLEAPVPGS*KLTAFTEASFL
Trigger: TAGAAAGGAAGCCTCCGTGAAAGCTGTCAATTTTCAAGAACCAGGGACAGGTGCTTCCAAGAAAGACCGGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS TCA 72 bp GCGCAGTATTTAGTTCAGTTTGATGCTTCAGTTTCCTaGCAGCGTCTTTCAAGTTCCTGTTCTCTAGGCTCA +
Preference number: 6 (lower is better)
Translates to: AQYLVQFDASVS*QRLSSSCSLGS
Trigger: TGAGCCTAGAGAACAGGAACTTGAAAGACGCTGTCAGGAAACTGAAGCATCAAACTGAACTAAATACTGCGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS TCA 72 bp ATTTCTTCTCTGAGGAGCGCAGTATTTAGTTCAGTTTaGTGCTTCAGTTTCCTGACAGCGTCTTTCAAGTTC +
Preference number: 6 (lower is better)
Translates to: ISSLRSAVFSSV*CFSFLTASFKF
Trigger: GAACTTGAAAGACGCTGTCAGGAAACTGAAGCATCAAACTGAACTAAATACTGCGCTCCTCAGAGAAGAAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS TCA 72 bp CCATCTCCAGCTCGTAAAACAACTTCATTTCTTCTCTaGGGAGCGCAGTATTTAGTTCAGTTTGATGCTTCA +
Preference number: 6 (lower is better)
Translates to: PSPARKTTSFLL*GAQYLVQFDAS
Trigger: TGAAGCATCAAACTGAACTAAATACTGCGCTCCTCAGAGAAGAAATGAAGTTGTTTTACGAGCTGGAGATGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2
CDS CAA 72 bp CCAAATGAAGAGAGTCCCAGAAGGCAGAATTGGTATTaGCATCATTCTTTGACACGTTCATTCTTCTCTCTC +
Preference number: 6 (lower is better)
Translates to: PNEESPRRQNWY*HHSLTRSFFSL
Trigger: GAGAGAGAAGAATGAACGTGTCAAAGAATGATGCAAATACCAATTCTGCCTTCTGGGACTCTCTTCATTTGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101588.2