Pregenerated sensors for CCDC153 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000070306Ensembl transcript IDs: ENSMUST00000092426.5, ENSMUST00000213891.2, ENSMUST00000215554.2, ENSMUST00000215711.2, ENSMUST00000216632.2, ENSMUST00000217221.2, ENSMUST00000217510.2
Found 77 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGGGACCAAAAGTACTCCAGGCTTAAGGGAATGGGATCTAGTTTCTaGAGGAAAGGGTTTAGAACATTGTCTACTTCTTACCACTCAGTG | + |
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Preference number: 1 (lower is better) Translates to: RDQKYSRLKGMGSSF*RKGFRTLSTSYHSV Trigger: CACTGAGTGGTAAGAAGTAGACAATGTTCTAAACCCTTTCCTGCAGAAACTAGATCCCATTCCCTTAAGCCTGGAGTACTTTTGGTCCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092426.5 |
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| 3UTR-3UTR GCA 90 bp | CTTGAACTCAGAAATCCGCCCGCCTCTGCCTCCCAATTGTGTGAATTAAAGGTAATGGGATCTAGTTTCTaGAGGAAAGGGTTTAGAACA | + |
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Preference number: 2 (lower is better) Translates to: LELRNPPASASQLCELKVMGSSF*RKGFRT Trigger: TGTTCTAAACCCTTTCCTGCAGAAACTAGATCCCAT...TACCTTTAATTCACACAATTGGGAGGCAGAGGCGGGCGGATTTCTGAGTTCAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092426.5 |
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| 3UTR TCA 72 bp | ACTCAGAAATCCGCCCGCCTCTGCCTCCCAATTGTGTaGATTAAAGGTATGCACCGCCGTGCCCATTTAAGC | + |
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Preference number: 3 (lower is better) Translates to: TQKSARLCLPIV*IKGMHRRAHLS Trigger: GCTTAAATGGGCACGGCGGTGCATACCTTTAATTCACACAATTGGGAGGCAGAGGCGGGCGGATTTCTGAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092426.5 |
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| 3UTR CCA 72 bp | CATTGTCTACTTCTTACCACTCAGTGTTTAGGACAATaGGTCAACCCAGAACATAGATGTCCTCACTGCCAA | + |
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Preference number: 3 (lower is better) Translates to: HCLLLTTQCLGQ*VNPEHRCPHCQ Trigger: TTGGCAGTGAGGACATCTATGTTCTGGGTTGACCCATTGTCCTAAACACTGAGTGGTAAGAAGTAGACAATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092426.5 |
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| 3UTR GCA 72 bp | AAGTACTCCAGGCTTAAGGGAATGGGATCTAGTTTCTaGAGGAAAGGGTTTAGAACATTGTCTACTTCTTAC | + |
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Preference number: 3 (lower is better) Translates to: KYSRLKGMGSSF*RKGFRTLSTSY Trigger: GTAAGAAGTAGACAATGTTCTAAACCCTTTCCTGCAGAAACTAGATCCCATTCCCTTAAGCCTGGAGTACTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092426.5 |
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| CDS-3UTR TCA 90 bp | AGGCTGGCCTTGAACTCAGAAATCCGCCCGCCTCTGCCTCCCAATTGTGTGAATTTCCATCTTGCTTTCTaGGGGCTCGCTCAGCCTCTT | + |
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Preference number: 4 (lower is better) Translates to: RLALNSEIRPPLPPNCVNFHLAF*GLAQPL Trigger: AAGAGGCTGAGCGAGCCCTCAGAAAGCAAGATGGAA...ATTCACACAATTGGGAGGCAGAGGCGGGCGGATTTCTGAGTTCAAGGCCAGCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092426.5 |
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| CDS-3UTR GCA 90 bp | AGGCTGGCCTTGAACTCAGAAATCCGCCCGCCTCTGCCTCCCAATTGTGTGAATGAGTCTCAGCACATTTaGATCCCAGTGAGGCTTGAC | + |
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Preference number: 4 (lower is better) Translates to: RLALNSEIRPPLPPNCVNESQHI*IPVRLD Trigger: GTCAAGCCTCACTGGGATGCAAATGTGCTGAGACTC...ATTCACACAATTGGGAGGCAGAGGCGGGCGGATTTCTGAGTTCAAGGCCAGCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092426.5 |
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| 3UTR CAA 72 bp | CTTGAACTCAGAAATCCGCCCGCCTCTGCCTCCCAATaGTGTGAATTAAAGGTATGCACCGCCGTGCCCATT | + |
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Preference number: 4 (lower is better) Translates to: LELRNPPASASQ*CELKVCTAVPI Trigger: AATGGGCACGGCGGTGCATACCTTTAATTCACACAATTGGGAGGCAGAGGCGGGCGGATTTCTGAGTTCAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092426.5 |
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| CDS-3UTR CCA 90 bp | AGTACTCCAGGCTTAAGGGAATGGGATCTAGTTTCTGCAGGAAAGGGTTTAGAAGCACCAGCCTGTGCTTaGCCTCAGCCTCCACACCAG | + |
|
Preference number: 4 (lower is better) Translates to: STPGLREWDLVSAGKGLEAPACA*PQPPHQ Trigger: CTGGTGTGGAGGCTGAGGCCAAGCACAGGCTGGTGC...TTCTAAACCCTTTCCTGCAGAAACTAGATCCCATTCCCTTAAGCCTGGAGTACT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092426.5 |
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| CDS-3UTR TCA 90 bp | TACTCCAGGCTTAAGGGAATGGGATCTAGTTTCTGCAGGAAAGGGTTTAGAACAAGAGCCAAGCGGTCCTaGAGCAGCTCCTTCTCGAGC | + |
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Preference number: 4 (lower is better) Translates to: YSRLKGMGSSFCRKGFRTRAKRS*SSSFSS Trigger: GCTCGAGAAGGAGCTGCTTCAGGACCGCTTGGCTCT...TGTTCTAAACCCTTTCCTGCAGAAACTAGATCCCATTCCCTTAAGCCTGGAGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092426.5 |
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| CDS-3UTR GCA 90 bp | TACTCCAGGCTTAAGGGAATGGGATCTAGTTTCTGCAGGAAAGGGTTTAGAACAAGCAGCACCAGCCTGTaGTTGGCCTCAGCCTCCACA | + |
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Preference number: 4 (lower is better) Translates to: YSRLKGMGSSFCRKGFRTSSTSL*LASAST Trigger: TGTGGAGGCTGAGGCCAAGCACAGGCTGGTGCTGCT...TGTTCTAAACCCTTTCCTGCAGAAACTAGATCCCATTCCCTTAAGCCTGGAGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092426.5 |
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| CDS-3UTR GCA 90 bp | CTTGAACTCAGAAATCCGCCCGCCTCTGCCTCCCAATTGTGTGAATTAAAGGTATTTGGCCTCCATGTCTaGCACGTGGGCATGAAGCTG | + |
|
Preference number: 4 (lower is better) Translates to: LELRNPPASASQLCELKVFGLHV*HVGMKL Trigger: CAGCTTCATGCCCACGTGGCAGACATGGAGGCCAAA...TACCTTTAATTCACACAATTGGGAGGCAGAGGCGGGCGGATTTCTGAGTTCAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092426.5 |
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| CDS-3UTR TCA 90 bp | AGTACTCCAGGCTTAAGGGAATGGGATCTAGTTTCTGCAGGAAAGGGTTTAGAACATCCCAGTGAGGCTTaGCCACTCTCAGCTTGGCCA | + |
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Preference number: 4 (lower is better) Translates to: STPGLREWDLVSAGKGLEHPSEA*PLSAWP Trigger: TGGCCAAGCTGAGAGTGGTCAAGCCTCACTGGGATG...TTCTAAACCCTTTCCTGCAGAAACTAGATCCCATTCCCTTAAGCCTGGAGTACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092426.5 |
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| CDS-3UTR CCA 90 bp | ATGTCCTCACTGCCAAAGGCCATAATCCATAGTTCTATTGAATTCTACATCAAGGCACCAGCCTGTGCTTaGCCTCAGCCTCCACACCAG | + |
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Preference number: 4 (lower is better) Translates to: MSSLPKAIIHSSIEFYIKAPACA*PQPPHQ Trigger: CTGGTGTGGAGGCTGAGGCCAAGCACAGGCTGGTGC...CTTGATGTAGAATTCAATAGAACTATGGATTATGGCCTTTGGCAGTGAGGACAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092426.5 ENSMUST00000213891.2 |
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| CDS-3UTR CCA 90 bp | TTTCAAGACAGGGTTTCTCTGTACAGCCCTGGCTATCCTGGAACTCACTGTAGAGTCTTAGCCTCCCTTTaGCATGTTTCTAGCTGCTCC | + |
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Preference number: 4 (lower is better) Translates to: FQDRVSLYSPGYPGTHCRVLASL*HVSSCS Trigger: GGAGCAGCTAGAAACATGCCAAAGGGAGGCTAAGAC...TCTACAGTGAGTTCCAGGATAGCCAGGGCTGTACAGAGAAACCCTGTCTTGAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092426.5 |
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| CDS-3UTR TCA 90 bp | ATGTCCTCACTGCCAAAGGCCATAATCCATAGTTCTATTGAATTCTACATCAAGAGAGCCAAGCGGTCCTaGAGCAGCTCCTTCTCGAGC | + |
|
Preference number: 4 (lower is better) Translates to: MSSLPKAIIHSSIEFYIKRAKRS*SSSFSS Trigger: GCTCGAGAAGGAGCTGCTTCAGGACCGCTTGGCTCT...CTTGATGTAGAATTCAATAGAACTATGGATTATGGCCTTTGGCAGTGAGGACAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092426.5 ENSMUST00000213891.2 |
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| CDS-3UTR TCA 90 bp | GGTTTAGAACATTGTCTACTTCTTACCACTCAGTGTTTAGGACAATGGGTCAACGCCGCAGTTGCTCCTTaGGTCTGGTGTGGAGTCTCA | + |
|
Preference number: 4 (lower is better) Translates to: GLEHCLLLTTQCLGQWVNAAVAP*VWCGVS Trigger: TGAGACTCCACACCAGACTCAAGGAGCAACTGCGGC...GTTGACCCATTGTCCTAAACACTGAGTGGTAAGAAGTAGACAATGTTCTAAACC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092426.5 |
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| CDS-3UTR GCA 90 bp | ATGTCCTCACTGCCAAAGGCCATAATCCATAGTTCTATTGAATTCTACATCAAGAGCAGCACCAGCCTGTaGTTGGCCTCAGCCTCCACA | + |
|
Preference number: 4 (lower is better) Translates to: MSSLPKAIIHSSIEFYIKSSTSL*LASAST Trigger: TGTGGAGGCTGAGGCCAAGCACAGGCTGGTGCTGCT...CTTGATGTAGAATTCAATAGAACTATGGATTATGGCCTTTGGCAGTGAGGACAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092426.5 ENSMUST00000213891.2 |
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| CDS-3UTR CCA 90 bp | CTTGAACTCAGAAATCCGCCCGCCTCTGCCTCCCAATTGTGTGAATTAAAGGTAGCCTTCCCTTCACTTTaGGTTCTTTCCAGTTCAGCT | + |
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Preference number: 4 (lower is better) Translates to: LELRNPPASASQLCELKVAFPSL*VLSSSA Trigger: AGCTGAACTGGAAAGAACCCAAAGTGAAGGGAAGGC...TACCTTTAATTCACACAATTGGGAGGCAGAGGCGGGCGGATTTCTGAGTTCAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092426.5 |
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| CDS-3UTR TCA 90 bp | ATGTCCTCACTGCCAAAGGCCATAATCCATAGTTCTATTGAATTCTACATCAAGCATCCCAGTGAGGCTTaGCCACTCTCAGCTTGGCCA | + |
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Preference number: 4 (lower is better) Translates to: MSSLPKAIIHSSIEFYIKHPSEA*PLSAWP Trigger: TGGCCAAGCTGAGAGTGGTCAAGCCTCACTGGGATG...CTTGATGTAGAATTCAATAGAACTATGGATTATGGCCTTTGGCAGTGAGGACAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092426.5 ENSMUST00000213891.2 |
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| CDS-3UTR TCA 90 bp | ATGTCCTCACTGCCAAAGGCCATAATCCATAGTTCTATTGAATTCTACATCAAGGCCGCAGTTGCTCCTTaGGTCTGGTGTGGAGTCTCA | + |
|
Preference number: 4 (lower is better) Translates to: MSSLPKAIIHSSIEFYIKAAVAP*VWCGVS Trigger: TGAGACTCCACACCAGACTCAAGGAGCAACTGCGGC...CTTGATGTAGAATTCAATAGAACTATGGATTATGGCCTTTGGCAGTGAGGACAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092426.5 ENSMUST00000213891.2 |
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| CDS-3UTR GCA 90 bp | ATGTCCTCACTGCCAAAGGCCATAATCCATAGTTCTATTGAATTCTACATCAAGTTTGGCCTCCATGTCTaGCACGTGGGCATGAAGCTG | + |
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Preference number: 4 (lower is better) Translates to: MSSLPKAIIHSSIEFYIKFGLHV*HVGMKL Trigger: CAGCTTCATGCCCACGTGGCAGACATGGAGGCCAAA...CTTGATGTAGAATTCAATAGAACTATGGATTATGGCCTTTGGCAGTGAGGACAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092426.5 ENSMUST00000213891.2 |
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| CDS-3UTR TCA 90 bp | AGTACTCCAGGCTTAAGGGAATGGGATCTAGTTTCTGCAGGAAAGGGTTTAGAACTCCACACCAGGACTTaGATTCTTTTTCTTCTTCCG | + |
|
Preference number: 4 (lower is better) Translates to: STPGLREWDLVSAGKGLELHTRT*ILFLLP Trigger: CGGAAGAAGAAAAAGAATTCAAGTCCTGGTGTGGAG...TTCTAAACCCTTTCCTGCAGAAACTAGATCCCATTCCCTTAAGCCTGGAGTACT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000092426.5 |
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| CDS-3UTR TCA 90 bp | ATGTCCTCACTGCCAAAGGCCATAATCCATAGTTCTATTGAATTCTACATCAAGGTCCAGGTTGTCCTGTaGACACCCAGCTTTCAGATG | + |
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Preference number: 4 (lower is better) Translates to: MSSLPKAIIHSSIEFYIKVQVVL*TPSFQM Trigger: CATCTGAAAGCTGGGTGTTCACAGGACAACCTGGAC...CTTGATGTAGAATTCAATAGAACTATGGATTATGGCCTTTGGCAGTGAGGACAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213891.2 |
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| CDS-3UTR GCA 90 bp | ATGTCCTCACTGCCAAAGGCCATAATCCATAGTTCTATTGAATTCTACATCAAGGCCAAGGTTCCATCTTaGTTTCTGAGGGCTCGCTCA | + |
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Preference number: 4 (lower is better) Translates to: MSSLPKAIIHSSIEFYIKAKVPS*FLRARS Trigger: TGAGCGAGCCCTCAGAAAGCAAGATGGAACCTTGGC...CTTGATGTAGAATTCAATAGAACTATGGATTATGGCCTTTGGCAGTGAGGACAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092426.5 ENSMUST00000213891.2 |
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| CDS-3UTR CCA 90 bp | AGTACTCCAGGCTTAAGGGAATGGGATCTAGTTTCTGCAGGAAAGGGTTTAGAATCATCTCTGCATATATaGCCTTCCCTTCACTTTGGG | + |
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Preference number: 4 (lower is better) Translates to: STPGLREWDLVSAGKGLESSLHI*PSLHFG Trigger: CCCAAAGTGAAGGGAAGGCCATATATGCAGAGATGA...TTCTAAACCCTTTCCTGCAGAAACTAGATCCCATTCCCTTAAGCCTGGAGTACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092426.5 |
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| CDS-3UTR GCA 90 bp | CTTCTTACCACTCAGTGTTTAGGACAATGGGTCAACCCAGAACATAGATGTCCTTGGCATGTTTCTAGCTaGTCCTTTAGACTTCTCACT | + |
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Preference number: 4 (lower is better) Translates to: LLTTQCLGQWVNPEHRCPWHVSS*SFRLLT Trigger: AGTGAGAAGTCTAAAGGAGCAGCTAGAAACATGCCA...AGGACATCTATGTTCTGGGTTGACCCATTGTCCTAAACACTGAGTGGTAAGAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092426.5 |
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| CDS-3UTR GCA 90 bp | ATGTCCTCACTGCCAAAGGCCATAATCCATAGTTCTATTGAATTCTACATCAAGGAGTCTCAGCACATTTaGATCCCAGTGAGGCTTGAC | + |
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Preference number: 4 (lower is better) Translates to: MSSLPKAIIHSSIEFYIKESQHI*IPVRLD Trigger: GTCAAGCCTCACTGGGATGCAAATGTGCTGAGACTC...CTTGATGTAGAATTCAATAGAACTATGGATTATGGCCTTTGGCAGTGAGGACAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092426.5 ENSMUST00000213891.2 |
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| CDS-3UTR CCA 90 bp | ATGTCCTCACTGCCAAAGGCCATAATCCATAGTTCTATTGAATTCTACATCAAGGTCTTAGCCTCCCTTTaGCATGTTTCTAGCTGCTCC | + |
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Preference number: 4 (lower is better) Translates to: MSSLPKAIIHSSIEFYIKVLASL*HVSSCS Trigger: GGAGCAGCTAGAAACATGCCAAAGGGAGGCTAAGAC...CTTGATGTAGAATTCAATAGAACTATGGATTATGGCCTTTGGCAGTGAGGACAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092426.5 ENSMUST00000213891.2 |
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| CDS-3UTR CCA 90 bp | ATGTCCTCACTGCCAAAGGCCATAATCCATAGTTCTATTGAATTCTACATCAAGGCCTTCCCTTCACTTTaGGTTCTTTCCAGTTCAGCT | + |
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Preference number: 4 (lower is better) Translates to: MSSLPKAIIHSSIEFYIKAFPSL*VLSSSA Trigger: AGCTGAACTGGAAAGAACCCAAAGTGAAGGGAAGGC...CTTGATGTAGAATTCAATAGAACTATGGATTATGGCCTTTGGCAGTGAGGACAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092426.5 ENSMUST00000213891.2 |
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| CDS-3UTR TCA 90 bp | ATGTCCTCACTGCCAAAGGCCATAATCCATAGTTCTATTGAATTCTACATCAAGCTCCACACCAGGACTTaGATTCTTTTTCTTCTTCCG | + |
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Preference number: 4 (lower is better) Translates to: MSSLPKAIIHSSIEFYIKLHTRT*ILFLLP Trigger: CGGAAGAAGAAAAAGAATTCAAGTCCTGGTGTGGAG...CTTGATGTAGAATTCAATAGAACTATGGATTATGGCCTTTGGCAGTGAGGACAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000092426.5 ENSMUST00000213891.2 |
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| CDS-3UTR GCA 90 bp | ATGTCCTCACTGCCAAAGGCCATAATCCATAGTTCTATTGAATTCTACATCAAGTGGCATGTTTCTAGCTaGTCCTTTAGACTTCTCACT | + |
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Preference number: 4 (lower is better) Translates to: MSSLPKAIIHSSIEFYIKWHVSS*SFRLLT Trigger: AGTGAGAAGTCTAAAGGAGCAGCTAGAAACATGCCA...CTTGATGTAGAATTCAATAGAACTATGGATTATGGCCTTTGGCAGTGAGGACAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092426.5 ENSMUST00000213891.2 |
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| CDS-3UTR GCA 90 bp | GGTTTAGAACATTGTCTACTTCTTACCACTCAGTGTTTAGGACAATGGGTCAACCAGTCCAGGTTGTCATaGAAGATTTCCTCATATTTG | + |
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Preference number: 4 (lower is better) Translates to: GLEHCLLLTTQCLGQWVNQSRLS*KISSYL Trigger: CAAATATGAGGAAATCTTGCATGACAACCTGGACTG...GTTGACCCATTGTCCTAAACACTGAGTGGTAAGAAGTAGACAATGTTCTAAACC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092426.5 |
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| 3UTR CAA 72 bp | ATGGGATCTAGTTTCTGCAGGAAAGGGTTTAGAACATaGTCTACTTCTTACCACTCAGTGTTTAGGACAATG | + |
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Preference number: 4 (lower is better) Translates to: MGSSFCRKGFRT*STSYHSVFRTM Trigger: CATTGTCCTAAACACTGAGTGGTAAGAAGTAGACAATGTTCTAAACCCTTTCCTGCAGAAACTAGATCCCAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092426.5 |
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| CDS-3UTR GCA 90 bp | ATGTCCTCACTGCCAAAGGCCATAATCCATAGTTCTATTGAATTCTACATCAAGCACCCAGCTTTCAGATaGAAGATTTCCTCATATTTG | + |
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Preference number: 4 (lower is better) Translates to: MSSLPKAIIHSSIEFYIKHPAFR*KISSYL Trigger: CAAATATGAGGAAATCTTGCATCTGAAAGCTGGGTG...CTTGATGTAGAATTCAATAGAACTATGGATTATGGCCTTTGGCAGTGAGGACAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213891.2 |
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| CDS GCA 90 bp | TTTCTAGCTGCTCCTTTAGACTTCTCACTTCCTCCTCCAGCTGTTTaGTTCGGGTCCCCAGCTCCTCCTTTAGGGCCTGCCGCTGGCGGC | + |
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Preference number: 5 (lower is better) Translates to: FLAAPLDFSLPPPAV*FGSPAPPLGPAAGG Trigger: GCCGCCAGCGGCAGGCCCTAAAGGAGGAGCTGGGGACCCGAAGCAAACAGCTGGAGGAGGAAGTGAGAAGTCTAAAGGAGCAGCTAGAAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENSMUST00000092426.5 ENSMUST00000213891.2 ENSMUST00000215554.2 ENSMUST00000215711.2 ENSMUST00000216632.2 ENSMUST00000217221.2 ENSMUST00000217510.2 |
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| CDS-3UTR CAA 90 bp | GCTGGCCTTGAACTCAGAAATCCGCCCGCCTCTGCCTCCCAATTGTGTGAATTACTGTCTTCAGAAGCCTaGGCTCGGCGAGCCTCTTCC | + |
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Preference number: 5 (lower is better) Translates to: AGLELRNPPASASQLCELLSSEA*ARRASS Trigger: GGAAGAGGCTCGCCGAGCCAAGGCTTCTGAAGACAG...TAATTCACACAATTGGGAGGCAGAGGCGGGCGGATTTCTGAGTTCAAGGCCAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092426.5 |
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| CDS-3UTR CAA 90 bp | GACCAGGCTGGCCTTGAACTCAGAAATCCGCCCGCCTCTGCCTCCCAATTGTGTCAAAGATCCAGGGGGTaGAGACCAAATTGCCGCAGT | + |
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Preference number: 5 (lower is better) Translates to: DQAGLELRNPPASASQLCQRSRG*RPNCRS Trigger: ACTGCGGCAATTTGGTCTCAACCCCCTGGATCTTTG...ACACAATTGGGAGGCAGAGGCGGGCGGATTTCTGAGTTCAAGGCCAGCCTGGTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000092426.5 |
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| CDS CCA 90 bp | GCTCCTCCTTTAGGGCCTGCCGCTGGCGGCTCATCTCTGCATATATaGCCTTCCCTTCACTTTGGGTTCTTTCCAGTTCAGCTTCTAGCC | + |
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Preference number: 5 (lower is better) Translates to: APPLGPAAGGSSLHI*PSLHFGFFPVQLLA Trigger: GGCTAGAAGCTGAACTGGAAAGAACCCAAAGTGAAGGGAAGGCCATATATGCAGAGATGAGCCGCCAGCGGCAGGCCCTAAAGGAGGAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000092426.5 ENSMUST00000213891.2 ENSMUST00000215711.2 ENSMUST00000216632.2 ENSMUST00000217221.2 ENSMUST00000217510.2 |
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| CDS CCA 90 bp | CTGAGGGCTCGCTCAGCCTCTTCCTTCGCTGTCTTAGCCTCCCTTTaGCATGTTTCTAGCTGCTCCTTTAGACTTCTCACTTCCTCCTCC | + |
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Preference number: 5 (lower is better) Translates to: LRARSASSFAVLASL*HVSSCSFRLLTSSS Trigger: GGAGGAGGAAGTGAGAAGTCTAAAGGAGCAGCTAGAAACATGCCAAAGGGAGGCTAAGACAGCGAAGGAAGAGGCTGAGCGAGCCCTCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000092426.5 ENSMUST00000213891.2 ENSMUST00000215554.2 ENSMUST00000215711.2 ENSMUST00000216632.2 ENSMUST00000217510.2 |
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| CDS GCA 90 bp | TCACTTTGGGTTCTTTCCAGTTCAGCTTCTAGCCCTTGTAACCTCTaGTTCAGCCTGTCTTCAGAAGCCTTGGCTCGGCGAGCCTCTTCC | + |
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Preference number: 5 (lower is better) Translates to: SLWVLSSSASSPCNL*FSLSSEALARRASS Trigger: GGAAGAGGCTCGCCGAGCCAAGGCTTCTGAAGACAGGCTGAAGCAGAGGTTACAAGGGCTAGAAGCTGAACTGGAAAGAACCCAAAGTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000092426.5 ENSMUST00000213891.2 ENSMUST00000215711.2 ENSMUST00000216632.2 ENSMUST00000217221.2 ENSMUST00000217510.2 |
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| CDS GCA 90 bp | GGCTTGACCACTCTCAGCTTGGCCAGTAGACAGTCCAGGTTGTCATaGAAGATTTCCTCATATTTGGCCTCCATGTCTGCCACGTGGGCA | + |
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Preference number: 5 (lower is better) Translates to: GLTTLSLASRQSRLS*KISSYLASMSATWA Trigger: TGCCCACGTGGCAGACATGGAGGCCAAATATGAGGAAATCTTGCATGACAACCTGGACTGTCTACTGGCCAAGCTGAGAGTGGTCAAGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092426.5 |
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| CDS CCA 90 bp | TGGCCAGTAGACAGTCCAGGTTGTCATGCAAGATTTCCTCATATTTaGCCTCCATGTCTGCCACGTGGGCATGAAGCTGAGCCAAGGTTC | + |
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Preference number: 5 (lower is better) Translates to: WPVDSPGCHARFPHI*PPCLPRGHEAEPRF Trigger: GAACCTTGGCTCAGCTTCATGCCCACGTGGCAGACATGGAGGCCAAATATGAGGAAATCTTGCATGACAACCTGGACTGTCTACTGGCCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092426.5 |
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| CDS-3UTR CAA 90 bp | CTTCTTACCACTCAGTGTTTAGGACAATGGGTCAACCCAGAACATAGATGTCCTAGCACCAGCCTGTGCTaGGCCTCAGCCTCCACACCA | + |
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Preference number: 5 (lower is better) Translates to: LLTTQCLGQWVNPEHRCPSTSLC*ASASTP Trigger: TGGTGTGGAGGCTGAGGCCAAGCACAGGCTGGTGCT...AGGACATCTATGTTCTGGGTTGACCCATTGTCCTAAACACTGAGTGGTAAGAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092426.5 |
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| CDS-3UTR CAA 90 bp | AGTACTCCAGGCTTAAGGGAATGGGATCTAGTTTCTGCAGGAAAGGGTTTAGAATCCTCCTCCAGCTGTTaGCTTCGGGTCCCCAGCTCC | + |
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Preference number: 5 (lower is better) Translates to: STPGLREWDLVSAGKGLESSSSC*LRVPSS Trigger: GGAGCTGGGGACCCGAAGCAAACAGCTGGAGGAGGA...TTCTAAACCCTTTCCTGCAGAAACTAGATCCCATTCCCTTAAGCCTGGAGTACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092426.5 |
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| CDS CCA 90 bp | TGTCCTGTGAACACCCAGCTTTCAGATGCAAGATTTCCTCATATTTaGCCTCCATGTCTGCCACGTGGGCATGAAGCTGAGCCAAGGTTC | + |
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Preference number: 5 (lower is better) Translates to: CPVNTQLSDARFPHI*PPCLPRGHEAEPRF Trigger: GAACCTTGGCTCAGCTTCATGCCCACGTGGCAGACATGGAGGCCAAATATGAGGAAATCTTGCATCTGAAAGCTGGGTGTTCACAGGACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000213891.2 ENSMUST00000215554.2 ENSMUST00000215711.2 ENSMUST00000216632.2 |
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| CDS GCA 90 bp | GTCCAGGTTGTCATGCAAGATTTCCTCATATTTGGCCTCCATGTCTaGCACGTGGGCATGAAGCTGAGCCAAGGTTCCATCTTGCTTTCT | + |
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Preference number: 5 (lower is better) Translates to: VQVVMQDFLIFGLHV*HVGMKLSQGSILLS Trigger: AGAAAGCAAGATGGAACCTTGGCTCAGCTTCATGCCCACGTGGCAGACATGGAGGCCAAATATGAGGAAATCTTGCATGACAACCTGGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092426.5 |
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| CDS-3UTR CAA 90 bp | ATGTCCTCACTGCCAAAGGCCATAATCCATAGTTCTATTGAATTCTACATCAAGAGCACCAGCCTGTGCTaGGCCTCAGCCTCCACACCA | + |
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Preference number: 5 (lower is better) Translates to: MSSLPKAIIHSSIEFYIKSTSLC*ASASTP Trigger: TGGTGTGGAGGCTGAGGCCAAGCACAGGCTGGTGCT...CTTGATGTAGAATTCAATAGAACTATGGATTATGGCCTTTGGCAGTGAGGACAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092426.5 ENSMUST00000213891.2 |
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| CDS-3UTR CAA 90 bp | ATGTCCTCACTGCCAAAGGCCATAATCCATAGTTCTATTGAATTCTACATCAAGTCCTCCTCCAGCTGTTaGCTTCGGGTCCCCAGCTCC | + |
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Preference number: 5 (lower is better) Translates to: MSSLPKAIIHSSIEFYIKSSSSC*LRVPSS Trigger: GGAGCTGGGGACCCGAAGCAAACAGCTGGAGGAGGA...CTTGATGTAGAATTCAATAGAACTATGGATTATGGCCTTTGGCAGTGAGGACAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092426.5 ENSMUST00000213891.2 |
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| CDS-3UTR CAA 90 bp | GGTTTTTCAAGACAGGGTTTCTCTGTACAGCCCTGGCTATCCTGGAACTCACTGCCTCCACACCAGGACTaGAATTCTTTTTCTTCTTCC | + |
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Preference number: 5 (lower is better) Translates to: GFSRQGFSVQPWLSWNSLPPHQD*NSFSSS Trigger: GGAAGAAGAAAAAGAATTCAAGTCCTGGTGTGGAGG...CAGTGAGTTCCAGGATAGCCAGGGCTGTACAGAGAAACCCTGTCTTGAAAAACC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000092426.5 |
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| CDS-3UTR CAA 90 bp | TACTCCAGGCTTAAGGGAATGGGATCTAGTTTCTGCAGGAAAGGGTTTAGAACAGGCCTTCCCTTCACTTaGGGTTCTTTCCAGTTCAGC | + |
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Preference number: 5 (lower is better) Translates to: YSRLKGMGSSFCRKGFRTGLPFT*GSFQFS Trigger: GCTGAACTGGAAAGAACCCAAAGTGAAGGGAAGGCC...TGTTCTAAACCCTTTCCTGCAGAAACTAGATCCCATTCCCTTAAGCCTGGAGTA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092426.5 |
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| CDS-3UTR CAA 90 bp | TTTCAAGACAGGGTTTCTCTGTACAGCCCTGGCTATCCTGGAACTCACTGTAGAAAGATTTCCTCATATTaGGCCTCCATGTCTGCCACG | + |
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Preference number: 5 (lower is better) Translates to: FQDRVSLYSPGYPGTHCRKISSY*ASMSAT Trigger: CGTGGCAGACATGGAGGCCAAATATGAGGAAATCTT...TCTACAGTGAGTTCCAGGATAGCCAGGGCTGTACAGAGAAACCCTGTCTTGAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092426.5 |
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| CDS-3UTR CAA 90 bp | ATGTCCTCACTGCCAAAGGCCATAATCCATAGTTCTATTGAATTCTACATCAAGGGCCTTCCCTTCACTTaGGGTTCTTTCCAGTTCAGC | + |
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Preference number: 5 (lower is better) Translates to: MSSLPKAIIHSSIEFYIKGLPFT*GSFQFS Trigger: GCTGAACTGGAAAGAACCCAAAGTGAAGGGAAGGCC...CTTGATGTAGAATTCAATAGAACTATGGATTATGGCCTTTGGCAGTGAGGACAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092426.5 ENSMUST00000213891.2 |
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| CDS-3UTR CAA 90 bp | ATGTCCTCACTGCCAAAGGCCATAATCCATAGTTCTATTGAATTCTACATCAAGCAAAGATCCAGGGGGTaGAGACCAAATTGCCGCAGT | + |
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Preference number: 5 (lower is better) Translates to: MSSLPKAIIHSSIEFYIKQRSRG*RPNCRS Trigger: ACTGCGGCAATTTGGTCTCAACCCCCTGGATCTTTG...CTTGATGTAGAATTCAATAGAACTATGGATTATGGCCTTTGGCAGTGAGGACAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000092426.5 ENSMUST00000213891.2 |
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| CDS-3UTR CAA 90 bp | ATGTCCTCACTGCCAAAGGCCATAATCCATAGTTCTATTGAATTCTACATCAAGAAGATTTCCTCATATTaGGCCTCCATGTCTGCCACG | + |
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Preference number: 5 (lower is better) Translates to: MSSLPKAIIHSSIEFYIKKISSY*ASMSAT Trigger: CGTGGCAGACATGGAGGCCAAATATGAGGAAATCTT...CTTGATGTAGAATTCAATAGAACTATGGATTATGGCCTTTGGCAGTGAGGACAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092426.5 ENSMUST00000213891.2 |
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| CDS-3UTR CAA 90 bp | ATGTCCTCACTGCCAAAGGCCATAATCCATAGTTCTATTGAATTCTACATCAAGCCTCCACACCAGGACTaGAATTCTTTTTCTTCTTCC | + |
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Preference number: 5 (lower is better) Translates to: MSSLPKAIIHSSIEFYIKPPHQD*NSFSSS Trigger: GGAAGAAGAAAAAGAATTCAAGTCCTGGTGTGGAGG...CTTGATGTAGAATTCAATAGAACTATGGATTATGGCCTTTGGCAGTGAGGACAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000092426.5 ENSMUST00000213891.2 |
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| CDS TCA 72 bp | AGGGCCTGCCGCTGGCGGCTCATCTCCAAGCGGTCCTaGAGCAGCTCCTTCTCGAGCAGCACCAGCCTGTGC | + |
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Preference number: 6 (lower is better) Translates to: RACRWRLISKRS*SSSFSSSTSLC Trigger: GCACAGGCTGGTGCTGCTCGAGAAGGAGCTGCTTCAGGACCGCTTGGAGATGAGCCGCCAGCGGCAGGCCCT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215554.2 |
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| CDS TCA 72 bp | CGGCGAGCCTCTTCCCTCTGTAGAGCCAAGCGGTCCTaGAGCAGCTCCTTCTCGAGCAGCACCAGCCTGTGC | + |
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Preference number: 6 (lower is better) Translates to: RRASSLCRAKRS*SSSFSSSTSLC Trigger: GCACAGGCTGGTGCTGCTCGAGAAGGAGCTGCTTCAGGACCGCTTGGCTCTACAGAGGGAAGAGGCTCGCCG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000092426.5 ENSMUST00000213891.2 ENSMUST00000217510.2 |
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| CDS CCA 72 bp | CTTCGGGTCCCCAGCTCCTCCTTTAGGGCCTGCCGCTaGCGGCTCATCTCTGCATATATGGCCTTCCCTTCA | + |
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Preference number: 6 (lower is better) Translates to: LRVPSSSFRACR*RLISAYMAFPS Trigger: TGAAGGGAAGGCCATATATGCAGAGATGAGCCGCCAGCGGCAGGCCCTAAAGGAGGAGCTGGGGACCCGAAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000092426.5 ENSMUST00000213891.2 ENSMUST00000215711.2 ENSMUST00000216632.2 ENSMUST00000217221.2 ENSMUST00000217510.2 |
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| CDS CAA 90 bp | GTTTCTAGCTGCTCCTTTAGACTTCTCACTTCCTCCTCCAGCTGTTaGCTTCGGGTCCCCAGCTCCTCCTTTAGGGCCTGCCGCTGGCGG | + |
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Preference number: 6 (lower is better) Translates to: VSSCSFRLLTSSSSC*LRVPSSSFRACRWR Trigger: CCGCCAGCGGCAGGCCCTAAAGGAGGAGCTGGGGACCCGAAGCAAACAGCTGGAGGAGGAAGTGAGAAGTCTAAAGGAGCAGCTAGAAAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENSMUST00000092426.5 ENSMUST00000213891.2 ENSMUST00000215554.2 ENSMUST00000215711.2 ENSMUST00000216632.2 ENSMUST00000217221.2 ENSMUST00000217510.2 |
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| CDS CCA 72 bp | CTTGTAACCTCTGCTTCAGCCTGTCTTCAGAAGCCTTaGCTCGGCGAGCCTCTTCCCTCTGTAGAGCCAAGC | + |
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Preference number: 6 (lower is better) Translates to: LVTSASACLQKP*LGEPLPSVEPS Trigger: GCTTGGCTCTACAGAGGGAAGAGGCTCGCCGAGCCAAGGCTTCTGAAGACAGGCTGAAGCAGAGGTTACAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000092426.5 ENSMUST00000213891.2 ENSMUST00000215711.2 ENSMUST00000217510.2 |
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| CDS CCA 72 bp | CTTGTAACCTCTGCTTCAGCCTGTCTTCAGAAGCCTTaGCTCGGCGAGCCTCTTCCCTCTGTAGAGCAGGAC | + |
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Preference number: 6 (lower is better) Translates to: LVTSASACLQKP*LGEPLPSVEQD Trigger: GTCCTGCTCTACAGAGGGAAGAGGCTCGCCGAGCCAAGGCTTCTGAAGACAGGCTGAAGCAGAGGTTACAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000216632.2 ENSMUST00000217221.2 |
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| CDS CAA 72 bp | CCTTGTAACCTCTGCTTCAGCCTGTCTTCAGAAGCCTaGGCTCGGCGAGCCTCTTCCCTCTGTAGAGCCAAG | + |
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Preference number: 6 (lower is better) Translates to: PCNLCFSLSSEA*ARRASSLCRAK Trigger: CTTGGCTCTACAGAGGGAAGAGGCTCGCCGAGCCAAGGCTTCTGAAGACAGGCTGAAGCAGAGGTTACAAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000092426.5 ENSMUST00000213891.2 ENSMUST00000215711.2 ENSMUST00000217510.2 |
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| CDS CAA 72 bp | CCTTGTAACCTCTGCTTCAGCCTGTCTTCAGAAGCCTaGGCTCGGCGAGCCTCTTCCCTCTGTAGAGCAGGA | + |
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Preference number: 6 (lower is better) Translates to: PCNLCFSLSSEA*ARRASSLCRAG Trigger: TCCTGCTCTACAGAGGGAAGAGGCTCGCCGAGCCAAGGCTTCTGAAGACAGGCTGAAGCAGAGGTTACAAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000216632.2 ENSMUST00000217221.2 |
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| CDS TCA 72 bp | TGTGGAGTCTCAGCACATTTGCATCCCAGTGAGGCTTaGCCACTCTCAGCTTGGCCAGTAGACAGTCCAGGT | + |
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Preference number: 6 (lower is better) Translates to: CGVSAHLHPSEA*PLSAWPVDSPG Trigger: ACCTGGACTGTCTACTGGCCAAGCTGAGAGTGGTCAAGCCTCACTGGGATGCAAATGTGCTGAGACTCCACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000092426.5 ENSMUST00000213891.2 ENSMUST00000215554.2 ENSMUST00000215711.2 ENSMUST00000216632.2 |
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| CDS GCA 72 bp | TTGCTCCTTGAGTCTGGTGTGGAGTCTCAGCACATTTaGATCCCAGTGAGGCTTGACCACTCTCAGCTTGGC | + |
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Preference number: 6 (lower is better) Translates to: LLLESGVESQHI*IPVRLDHSQLG Trigger: GCCAAGCTGAGAGTGGTCAAGCCTCACTGGGATGCAAATGTGCTGAGACTCCACACCAGACTCAAGGAGCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000092426.5 ENSMUST00000213891.2 ENSMUST00000215554.2 ENSMUST00000215711.2 ENSMUST00000216632.2 |
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| CDS CAA 72 bp | TCCAGGGGGTTGAGACCAAATTGCCGCAGTTGCTCCTaGAGTCTGGTGTGGAGTCTCAGCACATTTGCATCC | + |
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Preference number: 6 (lower is better) Translates to: SRGLRPNCRSCS*SLVWSLSTFAS Trigger: GGATGCAAATGTGCTGAGACTCCACACCAGACTCAAGGAGCAACTGCGGCAATTTGGTCTCAACCCCCTGGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000092426.5 ENSMUST00000213891.2 ENSMUST00000215554.2 ENSMUST00000215711.2 ENSMUST00000216632.2 |
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| CDS GCA 72 bp | GTTCTTTCCAGTTCAGCTTCTAGCCCTTGTAACCTCTaGTTCAGCCTGTCTTCAGAAGCCTTGGCTCGGCGA | + |
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Preference number: 6 (lower is better) Translates to: VLSSSASSPCNL*FSLSSEALARR Trigger: TCGCCGAGCCAAGGCTTCTGAAGACAGGCTGAAGCAGAGGTTACAAGGGCTAGAAGCTGAACTGGAAAGAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000092426.5 ENSMUST00000213891.2 ENSMUST00000215711.2 ENSMUST00000216632.2 ENSMUST00000217221.2 ENSMUST00000217510.2 |
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| CDS GCA 72 bp | GTCATGCAAGATTTCCTCATATTTGGCCTCCATGTCTaGCACGTGGGCATGAAGCTGAGCCAAGGTTCCATC | + |
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Preference number: 6 (lower is better) Translates to: VMQDFLIFGLHV*HVGMKLSQGSI Trigger: GATGGAACCTTGGCTCAGCTTCATGCCCACGTGGCAGACATGGAGGCCAAATATGAGGAAATCTTGCATGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092426.5 |
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| CDS GCA 72 bp | CAAAGATCCAGGGGGTTGAGACCAAATTGCCGCAGTTaGTCCTTGAGTCTGGTGTGGAGTCTCAGCACATTT | + |
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Preference number: 6 (lower is better) Translates to: QRSRGLRPNCRS*SLSLVWSLSTF Trigger: AAATGTGCTGAGACTCCACACCAGACTCAAGGAGCAACTGCGGCAATTTGGTCTCAACCCCCTGGATCTTTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000092426.5 ENSMUST00000213891.2 ENSMUST00000215554.2 ENSMUST00000215711.2 ENSMUST00000216632.2 |
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| CDS GCA 72 bp | CAGATGCAAGATTTCCTCATATTTGGCCTCCATGTCTaGCACGTGGGCATGAAGCTGAGCCAAGGTTCCATC | + |
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Preference number: 6 (lower is better) Translates to: QMQDFLIFGLHV*HVGMKLSQGSI Trigger: GATGGAACCTTGGCTCAGCTTCATGCCCACGTGGCAGACATGGAGGCCAAATATGAGGAAATCTTGCATCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000213891.2 ENSMUST00000215554.2 ENSMUST00000215711.2 ENSMUST00000216632.2 |
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| CDS CCA 72 bp | CGCTCAGCCTCTTCCTTCGCTGTCTTAGCCTCCCTTTaGCATGTTTCTAGCTGCTCCTTTAGACTTCTCACT | + |
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Preference number: 6 (lower is better) Translates to: RSASSFAVLASL*HVSSCSFRLLT Trigger: AGTGAGAAGTCTAAAGGAGCAGCTAGAAACATGCCAAAGGGAGGCTAAGACAGCGAAGGAAGAGGCTGAGCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000092426.5 ENSMUST00000213891.2 ENSMUST00000215554.2 ENSMUST00000215711.2 ENSMUST00000216632.2 ENSMUST00000217510.2 |
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| CDS CAA 72 bp | TCAAAGATCCAGGGGGTTGAGACCAAATTGCCGCAGTaGCTCCTTGAGTCTGGTGTGGAGTCTCAGCACATT | + |
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Preference number: 6 (lower is better) Translates to: SKIQGVETKLPQ*LLESGVESQHI Trigger: AATGTGCTGAGACTCCACACCAGACTCAAGGAGCAACTGCGGCAATTTGGTCTCAACCCCCTGGATCTTTGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000092426.5 ENSMUST00000213891.2 ENSMUST00000215554.2 ENSMUST00000215711.2 ENSMUST00000216632.2 |
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| CDS GCA 72 bp | TTCGCTGTCTTAGCCTCCCTTTGGCATGTTTCTAGCTaGTCCTTTAGACTTCTCACTTCCTCCTCCAGCTGT | + |
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Preference number: 6 (lower is better) Translates to: FAVLASLWHVSS*SFRLLTSSSSC Trigger: ACAGCTGGAGGAGGAAGTGAGAAGTCTAAAGGAGCAGCTAGAAACATGCCAAAGGGAGGCTAAGACAGCGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000092426.5 ENSMUST00000213891.2 ENSMUST00000215554.2 ENSMUST00000215711.2 ENSMUST00000216632.2 ENSMUST00000217510.2 |
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| CDS GCA 72 bp | ACTCTCAGCTTGGCCAGTAGACAGTCCAGGTTGTCATaGAAGATTTCCTCATATTTGGCCTCCATGTCTGCC | + |
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Preference number: 6 (lower is better) Translates to: TLSLASRQSRLS*KISSYLASMSA Trigger: GGCAGACATGGAGGCCAAATATGAGGAAATCTTGCATGACAACCTGGACTGTCTACTGGCCAAGCTGAGAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092426.5 |
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| CDS CAA 72 bp | TTGACCACTCTCAGCTTGGCCAGTAGACAGTCCAGGTaGTCCTGTGAACACCCAGCTTTCAGATGCAAGATT | + |
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Preference number: 6 (lower is better) Translates to: LTTLSLASRQSR*SCEHPAFRCKI Trigger: AATCTTGCATCTGAAAGCTGGGTGTTCACAGGACAACCTGGACTGTCTACTGGCCAAGCTGAGAGTGGTCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000213891.2 ENSMUST00000215554.2 ENSMUST00000215711.2 ENSMUST00000216632.2 |
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| CDS CAA 72 bp | TTGACCACTCTCAGCTTGGCCAGTAGACAGTCCAGGTaGTCATGCAAGATTTCCTCATATTTGGCCTCCATG | + |
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Preference number: 6 (lower is better) Translates to: LTTLSLASRQSR*SCKISSYLASM Trigger: CATGGAGGCCAAATATGAGGAAATCTTGCATGACAACCTGGACTGTCTACTGGCCAAGCTGAGAGTGGTCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092426.5 |
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