Pregenerated sensors for CCDC142 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000107499Ensembl transcript IDs: ENSMUST00000101254.9
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | ACGCCCCCTACCAGGCCCAGCAGCCCGGGCAGCAGCTCTCGCTCTTaGTCGCACTGCCGACGGAGCTGCTCCTGCAAGCCCGATCCGCCA | + |
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Preference number: 5 (lower is better) Translates to: TPPTRPSSPGSSSRS*SHCRRSCSCKPDPP Trigger: TGGCGGATCGGGCTTGCAGGAGCAGCTCCGTCGGCAGTGCGAGCAAGAGCGAGAGCTGCTGCCCGGGCTGCTGGGCCTGGTAGGGGGCGT 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS GCA 90 bp | GCCGCCCCACGAGATGGGCACAGCTGTAAATCGCCGTGCAACTGCTaGAGGGAGAGGGAACCGGCCGAGGAGCCGGAGCGGAGCAGCCGC | + |
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Preference number: 5 (lower is better) Translates to: AAPRDGHSCKSPCNC*REREPAEEPERSSR Trigger: GCGGCTGCTCCGCTCCGGCTCCTCGGCCGGTTCCCTCTCCCTGCAGCAGTTGCACGGCGATTTACAGCTGTGCCCATCTCGTGGGGCGGC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS GCA 90 bp | GCCACGGGCTTCAGCCAGCTTATCTGCCACCTGACAACCCCGCTCTaGAGCCAGGAGCTGGAGCACACGGGCCGCGGGGAATGGGCGCGC | + |
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Preference number: 5 (lower is better) Translates to: ATGFSQLICHLTTPL*SQELEHTGRGEWAR Trigger: GCGCGCCCATTCCCCGCGGCCCGTGTGCTCCAGCTCCTGGCTGCAGAGCGGGGTTGTCAGGTGGCAGATAAGCTGGCTGAAGCCCGTGGC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS CCA 90 bp | GGGCCCGCAGGAGCTGCTCTCGCTCGCGGTGCAGACGAAGCAATGTaGCCCGGAGCCGCTGAAGAGCGAAGGGCATCGGGCCGCTTGCAG | + |
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Preference number: 5 (lower is better) Translates to: GPAGAALARGADEAM*PGAAEERRASGRLQ Trigger: CTGCAAGCGGCCCGATGCCCTTCGCTCTTCAGCGGCTCCGGGCCACATTGCTTCGTCTGCACCGCGAGCGAGAGCAGCTCCTGCGGGCCC 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS GCA 90 bp | AGGCGCAGAGCCGCCCCACGAGATGGGCACAGCTGTAAATCGCCGTaGAACTGCTGCAGGGAGAGGGAACCGGCCGAGGAGCCGGAGCGG | + |
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Preference number: 5 (lower is better) Translates to: RRRAAPRDGHSCKSP*NCCREREPAEEPER Trigger: CCGCTCCGGCTCCTCGGCCGGTTCCCTCTCCCTGCAGCAGTTGCACGGCGATTTACAGCTGTGCCCATCTCGTGGGGCGGCTCTGCGCCT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS TCA 90 bp | TGCAAGCCCGATCCGCCACGGGCTTCAGCCAGCTTATCTGCCACCTaGCAACCCCGCTCTGCAGCCAGGAGCTGGAGCACACGGGCCGCG | + |
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Preference number: 5 (lower is better) Translates to: CKPDPPRASASLSAT*QPRSAARSWSTRAA Trigger: CGCGGCCCGTGTGCTCCAGCTCCTGGCTGCAGAGCGGGGTTGTCAGGTGGCAGATAAGCTGGCTGAAGCCCGTGGCGGATCGGGCTTGCA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS GCA 90 bp | AGAGCCGCCCCACGAGATGGGCACAGCTGTAAATCGCCGTGCAACTaGTGCAGGGAGAGGGAACCGGCCGAGGAGCCGGAGCGGAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: RAAPRDGHSCKSPCN*CREREPAEEPERSS Trigger: GCTGCTCCGCTCCGGCTCCTCGGCCGGTTCCCTCTCCCTGCAGCAGTTGCACGGCGATTTACAGCTGTGCCCATCTCGTGGGGCGGCTCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS GCA 90 bp | CTGCTCCTGCAAGCCCGATCCGCCACGGGCTTCAGCCAGCTTATCTaGCACCTGACAACCCCGCTCTGCAGCCAGGAGCTGGAGCACACG | + |
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Preference number: 5 (lower is better) Translates to: LLLQARSATGFSQLI*HLTTPLCSQELEHT Trigger: CGTGTGCTCCAGCTCCTGGCTGCAGAGCGGGGTTGTCAGGTGGCAGATAAGCTGGCTGAAGCCCGTGGCGGATCGGGCTTGCAGGAGCAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS GCA 90 bp | ATGGGTGAGGATGTGGTCAAGCCAGGCGCCCAGTGTGGCTGTCAGTaGCTGGCCGAGGGCAGGGGCTTGGGCTTCAGGTGGCAATCCCTG | + |
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Preference number: 5 (lower is better) Translates to: MGEDVVKPGAQCGCQ*LAEGRGLGFRWQSL Trigger: CAGGGATTGCCACCTGAAGCCCAAGCCCCTGCCCTCGGCCAGGCACTGACAGCCACACTGGGCGCCTGGCTTGACCACATCCTCACCCAT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS GCA 90 bp | GTCCGGCCCAGTGAACGAAGCTGCATCTCGATGGCAGCCTCCAAGTaGTGGGCAGCTAGCCCGACAGGGCGAGTCAGGAGAAGCGTCTCC | + |
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Preference number: 5 (lower is better) Translates to: VRPSERSCISMAASK*WAASPTGRVRRSVS Trigger: GGAGACGCTTCTCCTGACTCGCCCTGTCGGGCTAGCTGCCCAGCACTTGGAGGCTGCCATCGAGATGCAGCTTCGTTCACTGGGCCGGAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS GCA 90 bp | GGTGGTCTGCAGGGTACAGAGCCCCAGAGCGACAGGCGTAGGACCTaGAGGCGGACACAGCCTAAGTTCTGGCCTGGGCTGTCGAAGGCT | + |
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Preference number: 5 (lower is better) Translates to: GGLQGTEPQSDRRRT*RRTQPKFWPGLSKA Trigger: AGCCTTCGACAGCCCAGGCCAGAACTTAGGCTGTGTCCGCCTGCAGGTCCTACGCCTGTCGCTCTGGGGCTCTGTACCCTGCAGACCACC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS CCA 90 bp | CGGCCCAGTGAACGAAGCTGCATCTCGATGGCAGCCTCCAAGTGCTaGGCAGCTAGCCCGACAGGGCGAGTCAGGAGAAGCGTCTCCCTG | + |
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Preference number: 5 (lower is better) Translates to: RPSERSCISMAASKC*AASPTGRVRRSVSL Trigger: CAGGGAGACGCTTCTCCTGACTCGCCCTGTCGGGCTAGCTGCCCAGCACTTGGAGGCTGCCATCGAGATGCAGCTTCGTTCACTGGGCCG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS GCA 90 bp | CCCCACTGCTCTTGTTCCAGAACCTCCCTGACCACTCCGAAGTCTTaGTTGAGCTGCAGCGCCCCCTGCAGGCTGAACCGGATCCCATGG | + |
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Preference number: 5 (lower is better) Translates to: PHCSCSRTSLTTPKS*LSCSAPCRLNRIPW Trigger: CCATGGGATCCGGTTCAGCCTGCAGGGGGCGCTGCAGCTCAAGCAAGACTTCGGAGTGGTCAGGGAGGTTCTGGAACAAGAGCAGTGGGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS GCA 90 bp | CAGATCCTTCTGGAGCAGGAGCAAGAAGGAACCGGGGTCCCACGCTaGCAGGTGCTGCTGAGCTCTGCCCACAAACCAGAGCAAGGTGGT | + |
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Preference number: 5 (lower is better) Translates to: QILLEQEQEGTGVPR*QVLLSSAHKPEQGG Trigger: ACCACCTTGCTCTGGTTTGTGGGCAGAGCTCAGCAGCACCTGGCAGCGTGGGACCCCGGTTCCTTCTTGCTCCTGCTCCAGAAGGATCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS CCA 90 bp | AGGTCCAAACACTTAGCACAGGCTGCCCACAGCAAGGTCCAATACTaGCTCCACAGGGCTCCAGGTCCCCCAAGCCTCAGTCCGCTGCTG | + |
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Preference number: 5 (lower is better) Translates to: RSKHLAQAAHSKVQY*LHRAPGPPSLSPLL Trigger: CAGCAGCGGACTGAGGCTTGGGGGACCTGGAGCCCTGTGGAGCCAGTATTGGACCTTGCTGTGGGCAGCCTGTGCTAAGTGTTTGGACCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS GCA 90 bp | TCTTGTTCCAGAACCTCCCTGACCACTCCGAAGTCTTGCTTGAGCTaGAGCGCCCCCTGCAGGCTGAACCGGATCCCATGGGTGAGGATG | + |
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Preference number: 5 (lower is better) Translates to: SCSRTSLTTPKSCLS*SAPCRLNRIPWVRM Trigger: CATCCTCACCCATGGGATCCGGTTCAGCCTGCAGGGGGCGCTGCAGCTCAAGCAAGACTTCGGAGTGGTCAGGGAGGTTCTGGAACAAGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS CCA 90 bp | AGGGCCCCATCTAGCTGCTGGAAGATGCTGAGTGAGAGCAGAGTCTaGCGAAGCTCCTGCGACAGGCCCCACTGCTCTTGTTCCAGAACC | + |
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Preference number: 5 (lower is better) Translates to: RAPSSCWKMLSESRV*RSSCDRPHCSCSRT Trigger: GGTTCTGGAACAAGAGCAGTGGGGCCTGTCGCAGGAGCTTCGCCAGACTCTGCTCTCACTCAGCATCTTCCAGCAGCTAGATGGGGCCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS GCA 90 bp | CTGAGTGAGAGCAGAGTCTGGCGAAGCTCCTGCGACAGGCCCCACTaGTCTTGTTCCAGAACCTCCCTGACCACTCCGAAGTCTTGCTTG | + |
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Preference number: 5 (lower is better) Translates to: LSESRVWRSSCDRPH*SCSRTSLTTPKSCL Trigger: CAAGCAAGACTTCGGAGTGGTCAGGGAGGTTCTGGAACAAGAGCAGTGGGGCCTGTCGCAGGAGCTTCGCCAGACTCTGCTCTCACTCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS GCA 90 bp | AGCTGCTGGAAGATGCTGAGTGAGAGCAGAGTCTGGCGAAGCTCCTaGGACAGGCCCCACTGCTCTTGTTCCAGAACCTCCCTGACCACT | + |
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Preference number: 5 (lower is better) Translates to: SCWKMLSESRVWRSS*DRPHCSCSRTSLTT Trigger: AGTGGTCAGGGAGGTTCTGGAACAAGAGCAGTGGGGCCTGTCGCAGGAGCTTCGCCAGACTCTGCTCTCACTCAGCATCTTCCAGCAGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS GCA 90 bp | AGGAGCTGCATCTTTTCAGTCAAATTGTGGATCTCTAGGCCCAGCTaGTGCTCCACCTCCAGAGTGAGCGCTGCTTCGGAGGCCAGGCTG | + |
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Preference number: 5 (lower is better) Translates to: RSCIFSVKLWISRPS*CSTSRVSAASEARL Trigger: CAGCCTGGCCTCCGAAGCAGCGCTCACTCTGGAGGTGGAGCAGCAGCTGGGCCTAGAGATCCACAATTTGACTGAAAAGATGCAGCTCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS TCA 90 bp | GGGAGACTCCAAGACGAAGAGGGGGTGCCAAGTTTTCCAGGCTGTTaGGGCTGCTGGTGGGCAGTTCAGTGGTCTGGACCTCATAACAGA | + |
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Preference number: 5 (lower is better) Translates to: GRLQDEEGVPSFPGC*GCWWAVQWSGPHNR Trigger: TCTGTTATGAGGTCCAGACCACTGAACTGCCCACCAGCAGCCTCAACAGCCTGGAAAACTTGGCACCCCCTCTTCGTCTTGGAGTCTCCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS CCA 90 bp | GGTTCAGGACACAATCGAAGTCTCCAGTATCGACCCCTCGGCATGTaGAGCTTGAAGCCTTGTGTGGCTTGTTTATGGCATTCTTGGACA | + |
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Preference number: 5 (lower is better) Translates to: GSGHNRSLQYRPLGM*SLKPCVACLWHSWT Trigger: TGTCCAAGAATGCCATAAACAAGCCACACAAGGCTTCAAGCTCCACATGCCGAGGGGTCGATACTGGAGACTTCGATTGTGTCCTGAACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS TCA 90 bp | GACACAATCGAAGTCTCCAGTATCGACCCCTCGGCATGTGGAGCTTaGAGCCTTGTGTGGCTTGTTTATGGCATTCTTGGACAAACAGAC | + |
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Preference number: 5 (lower is better) Translates to: DTIEVSSIDPSACGA*SLVWLVYGILGQTD Trigger: GTCTGTTTGTCCAAGAATGCCATAAACAAGCCACACAAGGCTTCAAGCTCCACATGCCGAGGGGTCGATACTGGAGACTTCGATTGTGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS CCA 90 bp | GGCATGTGGAGCTTGAAGCCTTGTGTGGCTTGTTTATGGCATTCTTaGACAAACAGACCCAGTGATTCTTTGGGCAGGAGCTGCATCTTT | + |
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Preference number: 5 (lower is better) Translates to: GMWSLKPCVACLWHS*TNRPSDSLGRSCIF Trigger: AAAGATGCAGCTCCTGCCCAAAGAATCACTGGGTCTGTTTGTCCAAGAATGCCATAAACAAGCCACACAAGGCTTCAAGCTCCACATGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS TCA 90 bp | GCCTTGTGTGGCTTGTTTATGGCATTCTTGGACAAACAGACCCAGTaGTTCTTTGGGCAGGAGCTGCATCTTTTCAGTCAAATTGTGGAT | + |
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Preference number: 5 (lower is better) Translates to: ALCGLFMAFLDKQTQ*FFGQELHLFSQIVD Trigger: ATCCACAATTTGACTGAAAAGATGCAGCTCCTGCCCAAAGAATCACTGGGTCTGTTTGTCCAAGAATGCCATAAACAAGCCACACAAGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS CCA 90 bp | TGGCTTGTTTATGGCATTCTTGGACAAACAGACCCAGTGATTCTTTaGGCAGGAGCTGCATCTTTTCAGTCAAATTGTGGATCTCTAGGC | + |
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Preference number: 5 (lower is better) Translates to: WLVYGILGQTDPVIL*AGAASFQSNCGSLG Trigger: GCCTAGAGATCCACAATTTGACTGAAAAGATGCAGCTCCTGCCCAAAGAATCACTGGGTCTGTTTGTCCAAGAATGCCATAAACAAGCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS GCA 72 bp | TGCAGGTGGCGGGCGCAGTCCCGGGCCCGCAGGAGCTaGTCTCGCTCGCGGTGCAGACGAAGCAATGTGGCC | + |
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Preference number: 6 (lower is better) Translates to: CRWRAQSRARRS*SRSRCRRSNVA Trigger: GGCCACATTGCTTCGTCTGCACCGCGAGCGAGAGCAGCTCCTGCGGGCCCGGGACTGCGCCCGCCACCTGCA 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS GCA 72 bp | ACCAGGCCCAGCAGCCCGGGCAGCAGCTCTCGCTCTTaGTCGCACTGCCGACGGAGCTGCTCCTGCAAGCCC | + |
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Preference number: 6 (lower is better) Translates to: TRPSSPGSSSRS*SHCRRSCSCKP Trigger: GGGCTTGCAGGAGCAGCTCCGTCGGCAGTGCGAGCAAGAGCGAGAGCTGCTGCCCGGGCTGCTGGGCCTGGT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS GCA 72 bp | AGCAGCCCGGGCAGCAGCTCTCGCTCTTGCTCGCACTaGCGACGGAGCTGCTCCTGCAAGCCCGATCCGCCA | + |
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Preference number: 6 (lower is better) Translates to: SSPGSSSRSCSH*RRSCSCKPDPP Trigger: TGGCGGATCGGGCTTGCAGGAGCAGCTCCGTCGGCAGTGCGAGCAAGAGCGAGAGCTGCTGCCCGGGCTGCT 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS GCA 72 bp | GATGTGGTCAAGCCAGGCGCCCAGTGTGGCTGTCAGTaGCTGGCCGAGGGCAGGGGCTTGGGCTTCAGGTGG | + |
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Preference number: 6 (lower is better) Translates to: DVVKPGAQCGCQ*LAEGRGLGFRW Trigger: CCACCTGAAGCCCAAGCCCCTGCCCTCGGCCAGGCACTGACAGCCACACTGGGCGCCTGGCTTGACCACATC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS GCA 72 bp | CGAGATGGGCACAGCTGTAAATCGCCGTGCAACTGCTaGAGGGAGAGGGAACCGGCCGAGGAGCCGGAGCGG | + |
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Preference number: 6 (lower is better) Translates to: RDGHSCKSPCNC*REREPAEEPER Trigger: CCGCTCCGGCTCCTCGGCCGGTTCCCTCTCCCTGCAGCAGTTGCACGGCGATTTACAGCTGTGCCCATCTCG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS GCA 72 bp | CCACGAGATGGGCACAGCTGTAAATCGCCGTGCAACTaGTGCAGGGAGAGGGAACCGGCCGAGGAGCCGGAG | + |
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Preference number: 6 (lower is better) Translates to: PRDGHSCKSPCN*CREREPAEEPE Trigger: CTCCGGCTCCTCGGCCGGTTCCCTCTCCCTGCAGCAGTTGCACGGCGATTTACAGCTGTGCCCATCTCGTGG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS GCA 72 bp | TTCAGCCAGCTTATCTGCCACCTGACAACCCCGCTCTaGAGCCAGGAGCTGGAGCACACGGGCCGCGGGGAA | + |
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Preference number: 6 (lower is better) Translates to: FSQLICHLTTPL*SQELEHTGRGE Trigger: TTCCCCGCGGCCCGTGTGCTCCAGCTCCTGGCTGCAGAGCGGGGTTGTCAGGTGGCAGATAAGCTGGCTGAA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS GCA 72 bp | CAGGGTACAGAGCCCCAGAGCGACAGGCGTAGGACCTaGAGGCGGACACAGCCTAAGTTCTGGCCTGGGCTG | + |
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Preference number: 6 (lower is better) Translates to: QGTEPQSDRRRT*RRTQPKFWPGL Trigger: CAGCCCAGGCCAGAACTTAGGCTGTGTCCGCCTGCAGGTCCTACGCCTGTCGCTCTGGGGCTCTGTACCCTG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS CCA 72 bp | CGGGTGTCCGGCCCAGTGAACGAAGCTGCATCTCGATaGCAGCCTCCAAGTGCTGGGCAGCTAGCCCGACAG | + |
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Preference number: 6 (lower is better) Translates to: RVSGPVNEAASR*QPPSAGQLARQ Trigger: CTGTCGGGCTAGCTGCCCAGCACTTGGAGGCTGCCATCGAGATGCAGCTTCGTTCACTGGGCCGGACACCCG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS CCA 72 bp | CCCTGCAGGCTGAACCGGATCCCATGGGTGAGGATGTaGTCAAGCCAGGCGCCCAGTGTGGCTGTCAGTGCC | + |
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Preference number: 6 (lower is better) Translates to: PCRLNRIPWVRM*SSQAPSVAVSA Trigger: GGCACTGACAGCCACACTGGGCGCCTGGCTTGACCACATCCTCACCCATGGGATCCGGTTCAGCCTGCAGGG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS CCA 72 bp | CTGGTTTCCCACCAGGTAAGCCTCAGGACTAGGTCCTaGTCCTCCCCCTCCCCCTCCTCCTCGTCCTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: LVSHQVSLRTRS*SSPSPSSSSSS Trigger: GGAGGAGGACGAGGAGGAGGGGGAGGGGGAGGACCAGGACCTAGTCCTGAGGCTTACCTGGTGGGAAACCAG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS TCA 72 bp | GGATGTCAGGCCCAGGCTAGCGGGTGTCCGGCCCAGTaGACGAAGCTGCATCTCGATGGCAGCCTCCAAGTG | + |
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Preference number: 6 (lower is better) Translates to: GCQAQASGCPAQ*TKLHLDGSLQV Trigger: CACTTGGAGGCTGCCATCGAGATGCAGCTTCGTTCACTGGGCCGGACACCCGCTAGCCTGGGCCTGACATCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS TCA 72 bp | GATCCGCCACGGGCTTCAGCCAGCTTATCTGCCACCTaGCAACCCCGCTCTGCAGCCAGGAGCTGGAGCACA | + |
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Preference number: 6 (lower is better) Translates to: DPPRASASLSAT*QPRSAARSWST Trigger: TGTGCTCCAGCTCCTGGCTGCAGAGCGGGGTTGTCAGGTGGCAGATAAGCTGGCTGAAGCCCGTGGCGGATC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS GCA 72 bp | AACCGGGGTCCCACGCTGCCAGGTGCTGCTGAGCTCTaGCCACAAACCAGAGCAAGGTGGTCTGCAGGGTAC | + |
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Preference number: 6 (lower is better) Translates to: NRGPTLPGAAEL*PQTRARWSAGY Trigger: GTACCCTGCAGACCACCTTGCTCTGGTTTGTGGGCAGAGCTCAGCAGCACCTGGCAGCGTGGGACCCCGGTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS GCA 72 bp | CTGGAGCAGGAGCAAGAAGGAACCGGGGTCCCACGCTaGCAGGTGCTGCTGAGCTCTGCCCACAAACCAGAG | + |
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Preference number: 6 (lower is better) Translates to: LEQEQEGTGVPR*QVLLSSAHKPE Trigger: CTCTGGTTTGTGGGCAGAGCTCAGCAGCACCTGGCAGCGTGGGACCCCGGTTCCTTCTTGCTCCTGCTCCAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS GCA 72 bp | AGAACCTCCCTGACCACTCCGAAGTCTTGCTTGAGCTaGAGCGCCCCCTGCAGGCTGAACCGGATCCCATGG | + |
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Preference number: 6 (lower is better) Translates to: RTSLTTPKSCLS*SAPCRLNRIPW Trigger: CCATGGGATCCGGTTCAGCCTGCAGGGGGCGCTGCAGCTCAAGCAAGACTTCGGAGTGGTCAGGGAGGTTCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS CCA 72 bp | AGGCGTAGGACCTGCAGGCGGACACAGCCTAAGTTCTaGCCTGGGCTGTCGAAGGCTATCCAAGAGGGGAGG | + |
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Preference number: 6 (lower is better) Translates to: RRRTCRRTQPKF*PGLSKAIQEGR Trigger: CCTCCCCTCTTGGATAGCCTTCGACAGCCCAGGCCAGAACTTAGGCTGTGTCCGCCTGCAGGTCCTACGCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS TCA 72 bp | AGCTCAGAGGTAGGAGACAGTGACGCAGGGCTGCTCTaGCCACCCAGGGCTGATCCTAAGGCCTGGCAGAAC | + |
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Preference number: 6 (lower is better) Translates to: SSEVGDSDAGLL*PPRADPKAWQN Trigger: GTTCTGCCAGGCCTTAGGATCAGCCCTGGGTGGTCAGAGCAGCCCTGCGTCACTGTCTCCTACCTCTGAGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS GCA 72 bp | AGTGAACGAAGCTGCATCTCGATGGCAGCCTCCAAGTaGTGGGCAGCTAGCCCGACAGGGCGAGTCAGGAGA | + |
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Preference number: 6 (lower is better) Translates to: SERSCISMAASK*WAASPTGRVRR Trigger: TCTCCTGACTCGCCCTGTCGGGCTAGCTGCCCAGCACTTGGAGGCTGCCATCGAGATGCAGCTTCGTTCACT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS GCA 72 bp | AGCAGAGTCTGGCGAAGCTCCTGCGACAGGCCCCACTaGTCTTGTTCCAGAACCTCCCTGACCACTCCGAAG | + |
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Preference number: 6 (lower is better) Translates to: SRVWRSSCDRPH*SCSRTSLTTPK Trigger: CTTCGGAGTGGTCAGGGAGGTTCTGGAACAAGAGCAGTGGGGCCTGTCGCAGGAGCTTCGCCAGACTCTGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS CCA 72 bp | CACTTAGCACAGGCTGCCCACAGCAAGGTCCAATACTaGCTCCACAGGGCTCCAGGTCCCCCAAGCCTCAGT | + |
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Preference number: 6 (lower is better) Translates to: HLAQAAHSKVQY*LHRAPGPPSLS Trigger: ACTGAGGCTTGGGGGACCTGGAGCCCTGTGGAGCCAGTATTGGACCTTGCTGTGGGCAGCCTGTGCTAAGTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS CAA 72 bp | AGGCAGGGGTGCTTGACACAGTGCCTGACTCAGCTCTaGTGCCATTGCTCTAGGGTCCTCCCAGGGTCCCAC | + |
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Preference number: 6 (lower is better) Translates to: RQGCLTQCLTQL*CHCSRVLPGSH Trigger: GTGGGACCCTGGGAGGACCCTAGAGCAATGGCACAAGAGCTGAGTCAGGCACTGTGTCAAGCACCCCTGCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS CAA 72 bp | CCAAGACGAAGAGGGGGTGCCAAGTTTTCCAGGCTGTaGAGGCTGCTGGTGGGCAGTTCAGTGGTCTGGACC | + |
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Preference number: 6 (lower is better) Translates to: PRRRGGAKFSRL*RLLVGSSVVWT Trigger: GGTCCAGACCACTGAACTGCCCACCAGCAGCCTCAACAGCCTGGAAAACTTGGCACCCCCTCTTCGTCTTGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS CAA 90 bp | GCCGAGGGCAGGGGCTTGGGCTTCAGGTGGCAATCCCTGAAGTCCTaGCAACACAGGCTCCAACACAGAGTAGACCACTATCCGAGCGTA | + |
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Preference number: 6 (lower is better) Translates to: AEGRGLGFRWQSLKS*QHRLQHRVDHYPSV Trigger: TACGCTCGGATAGTGGTCTACTCTGTGTTGGAGCCTGTGTTGCAAGGACTTCAGGGATTGCCACCTGAAGCCCAAGCCCCTGCCCTCGGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS TCA 72 bp | CAAGACGAAGAGGGGGTGCCAAGTTTTCCAGGCTGTTaGGGCTGCTGGTGGGCAGTTCAGTGGTCTGGACCT | + |
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Preference number: 6 (lower is better) Translates to: QDEEGVPSFPGC*GCWWAVQWSGP Trigger: AGGTCCAGACCACTGAACTGCCCACCAGCAGCCTCAACAGCCTGGAAAACTTGGCACCCCCTCTTCGTCTTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS GCA 72 bp | TGTCGAAGGCTATCCAAGAGGGGAGGAAAAAGCCGCTaGAGCAGCTCAGAGGTAGGAGACAGTGACGCAGGG | + |
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Preference number: 6 (lower is better) Translates to: CRRLSKRGGKSR*SSSEVGDSDAG Trigger: CCCTGCGTCACTGTCTCCTACCTCTGAGCTGCTGCAGCGGCTTTTTCCTCCCCTCTTGGATAGCCTTCGACA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS GCA 72 bp | AAGATGCTGAGTGAGAGCAGAGTCTGGCGAAGCTCCTaGGACAGGCCCCACTGCTCTTGTTCCAGAACCTCC | + |
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Preference number: 6 (lower is better) Translates to: KMLSESRVWRSS*DRPHCSCSRTS Trigger: GGAGGTTCTGGAACAAGAGCAGTGGGGCCTGTCGCAGGAGCTTCGCCAGACTCTGCTCTCACTCAGCATCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS CCA 72 bp | ATAACAGAGACAGCAACGGGGAGGTCTTCTGTGGACTaGATTCTTGGGCAGGGGTTGCTGCAGGAGACACAG | + |
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Preference number: 6 (lower is better) Translates to: ITETATGRSSVD*ILGQGLLQETQ Trigger: CTGTGTCTCCTGCAGCAACCCCTGCCCAAGAATCCAGTCCACAGAAGACCTCCCCGTTGCTGTCTCTGTTAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS CAA 72 bp | AGGGGCTTGGGCTTCAGGTGGCAATCCCTGAAGTCCTaGCAACACAGGCTCCAACACAGAGTAGACCACTAT | + |
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Preference number: 6 (lower is better) Translates to: RGLGFRWQSLKS*QHRLQHRVDHY Trigger: ATAGTGGTCTACTCTGTGTTGGAGCCTGTGTTGCAAGGACTTCAGGGATTGCCACCTGAAGCCCAAGCCCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS CAA 72 bp | CGAAGTCTCCAGTATCGACCCCTCGGCATGTGGAGCTaGAAGCCTTGTGTGGCTTGTTTATGGCATTCTTGG | + |
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Preference number: 6 (lower is better) Translates to: RSLQYRPLGMWS*KPCVACLWHSW Trigger: CCAAGAATGCCATAAACAAGCCACACAAGGCTTCAAGCTCCACATGCCGAGGGGTCGATACTGGAGACTTCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS TCA 72 bp | GAAGTCTCCAGTATCGACCCCTCGGCATGTGGAGCTTaGAGCCTTGTGTGGCTTGTTTATGGCATTCTTGGA | + |
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Preference number: 6 (lower is better) Translates to: EVSSIDPSACGA*SLVWLVYGILG Trigger: TCCAAGAATGCCATAAACAAGCCACACAAGGCTTCAAGCTCCACATGCCGAGGGGTCGATACTGGAGACTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS CCA 72 bp | CACAATCGAAGTCTCCAGTATCGACCCCTCGGCATGTaGAGCTTGAAGCCTTGTGTGGCTTGTTTATGGCAT | + |
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Preference number: 6 (lower is better) Translates to: HNRSLQYRPLGM*SLKPCVACLWH Trigger: ATGCCATAAACAAGCCACACAAGGCTTCAAGCTCCACATGCCGAGGGGTCGATACTGGAGACTTCGATTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS CAA 72 bp | CCAGTATCGACCCCTCGGCATGTGGAGCTTGAAGCCTaGTGTGGCTTGTTTATGGCATTCTTGGACAAACAG | + |
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Preference number: 6 (lower is better) Translates to: PVSTPRHVELEA*CGLFMAFLDKQ Trigger: CTGTTTGTCCAAGAATGCCATAAACAAGCCACACAAGGCTTCAAGCTCCACATGCCGAGGGGTCGATACTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS CAA 90 bp | GGACACAATCGAAGTCTCCAGTATCGACCCCTCGGCATGTGGAGCTaGAAGCCTTGTGTGGCTTGTTTATGGCATTCTTGGACAAACAGA | + |
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Preference number: 6 (lower is better) Translates to: GHNRSLQYRPLGMWS*KPCVACLWHSWTNR Trigger: TCTGTTTGTCCAAGAATGCCATAAACAAGCCACACAAGGCTTCAAGCTCCACATGCCGAGGGGTCGATACTGGAGACTTCGATTGTGTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS CCA 72 bp | AGCTTGAAGCCTTGTGTGGCTTGTTTATGGCATTCTTaGACAAACAGACCCAGTGATTCTTTGGGCAGGAGC | + |
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Preference number: 6 (lower is better) Translates to: SLKPCVACLWHS*TNRPSDSLGRS Trigger: GCTCCTGCCCAAAGAATCACTGGGTCTGTTTGTCCAAGAATGCCATAAACAAGCCACACAAGGCTTCAAGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS CAA 90 bp | GTGGCTTGTTTATGGCATTCTTGGACAAACAGACCCAGTGATTCTTaGGGCAGGAGCTGCATCTTTTCAGTCAAATTGTGGATCTCTAGG | + |
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Preference number: 6 (lower is better) Translates to: VACLWHSWTNRPSDS*GRSCIFSVKLWISR Trigger: CCTAGAGATCCACAATTTGACTGAAAAGATGCAGCTCCTGCCCAAAGAATCACTGGGTCTGTTTGTCCAAGAATGCCATAAACAAGCCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS TCA 72 bp | GGCTTGTTTATGGCATTCTTGGACAAACAGACCCAGTaGTTCTTTGGGCAGGAGCTGCATCTTTTCAGTCAA | + |
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Preference number: 6 (lower is better) Translates to: GLFMAFLDKQTQ*FFGQELHLFSQ Trigger: TTGACTGAAAAGATGCAGCTCCTGCCCAAAGAATCACTGGGTCTGTTTGTCCAAGAATGCCATAAACAAGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS CCA 72 bp | TATGGCATTCTTGGACAAACAGACCCAGTGATTCTTTaGGCAGGAGCTGCATCTTTTCAGTCAAATTGTGGA | + |
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Preference number: 6 (lower is better) Translates to: YGILGQTDPVIL*AGAASFQSNCG Trigger: TCCACAATTTGACTGAAAAGATGCAGCTCCTGCCCAAAGAATCACTGGGTCTGTTTGTCCAAGAATGCCATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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| CDS CAA 72 bp | TTATGGCATTCTTGGACAAACAGACCCAGTGATTCTTaGGGCAGGAGCTGCATCTTTTCAGTCAAATTGTGG | + |
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Preference number: 6 (lower is better) Translates to: LWHSWTNRPSDS*GRSCIFSVKLW Trigger: CCACAATTTGACTGAAAAGATGCAGCTCCTGCCCAAAGAATCACTGGGTCTGTTTGTCCAAGAATGCCATAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101254.9 |
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