Pregenerated sensors for CCDC122 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034795Ensembl transcript IDs: ENSMUST00000048208.10, ENSMUST00000095625.11, ENSMUST00000175810.2
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGGAAGAAAAGGAAAAAGACAATATCTGTCATTGAGACAGGCCTCTaGTACTATGTGTGGGCTGTTAAGAGTCCAGAGGAACTTCACAGT | + |
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Preference number: 1 (lower is better) Translates to: RKKRKKTISVIETGL*YYVWAVKSPEELHS Trigger: ACTGTGAAGTTCCTCTGGACTCTTAACAGCCCACACATAGTATCAGAGGCCTGTCTCAATGACAGATATTGTCTTTTTCCTTTTCTTCCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000175810.2 |
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| 3UTR GCA 90 bp | TTTGAAAGATGCACATACAGTGTTCTGCTAGTTTCCTGTAAACACTaGTTTTGTCTACCTAGTGCTATGCACTATAGACAGGAAGACACT | + |
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Preference number: 1 (lower is better) Translates to: FERCTYSVLLVSCKH*FCLPSAMHYRQEDT Trigger: AGTGTCTTCCTGTCTATAGTGCATAGCACTAGGTAGACAAAAGCAGTGTTTACAGGAAACTAGCAGAACACTGTATGTGCATCTTTCAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048208.10 ENSMUST00000095625.11 |
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| 3UTR-3UTR TCA 90 bp | CAGTATTCTCTCCCACGGTGCTGCAGGCCTGCTCTGTATTTCACTGGCTTCCTTGACAATATCTGTCATTaGGACAGGCCTCTGATACTA | + |
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Preference number: 2 (lower is better) Translates to: QYSLPRCCRPALYFTGFLDNICH*DRPLIL Trigger: TAGTATCAGAGGCCTGTCTCAATGACAGATATTGTC...AAGGAAGCCAGTGAAATACAGAGCAGGCCTGCAGCACCGTGGGAGAGAATACTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000175810.2 |
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| 3UTR-3UTR GCA 90 bp | GTATTCTCTCCCACGGTGCTGCAGGCCTGCTCTGTATTTCACTGGCTTCCTTCTTCTTGCCGATGCATTTaGCTGTCTGTTTCTTTAGCT | + |
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Preference number: 2 (lower is better) Translates to: VFSPTVLQACSVFHWLPSSCRCI*LSVSLA Trigger: AGCTAAAGAAACAGACAGGCAAATGCATCGGCAAGA...AGAAGGAAGCCAGTGAAATACAGAGCAGGCCTGCAGCACCGTGGGAGAGAATAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000175810.2 |
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| 3UTR-3UTR GCA 90 bp | GTTAAGAGTCCAGAGGAACTTCACAGTATTCTCTCCCACGGTGCTGCAGGCCTGTTTAGAGTTCTCCATTaGAGCATCTTGCCGATGCAT | + |
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Preference number: 2 (lower is better) Translates to: VKSPEELHSILSHGAAGLFRVLH*SILPMH Trigger: ATGCATCGGCAAGATGCTGCAATGGAGAACTCTAAA...CAGGCCTGCAGCACCGTGGGAGAGAATACTGTGAAGTTCCTCTGGACTCTTAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000175810.2 |
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| 3UTR-3UTR CCA 90 bp | GAGTCCAGAGGAACTTCACAGTATTCTCTCCCACGGTGCTGCAGGCCTGCTCTGTTCCCTTGTGAATCTTaGAGGTTTTCCATAAGATCT | + |
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Preference number: 2 (lower is better) Translates to: ESRGTSQYSLPRCCRPALFPCES*RFSIRS Trigger: AGATCTTATGGAAAACCTCCAAGATTCACAAGGGAA...CAGAGCAGGCCTGCAGCACCGTGGGAGAGAATACTGTGAAGTTCCTCTGGACTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000175810.2 |
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| 3UTR-3UTR GCA 90 bp | GTATTCTCTCCCACGGTGCTGCAGGCCTGCTCTGTATTTCACTGGCTTCCTTCTTGTTGGATGTTCCATTaGCACTTCCTCCTATTTAAC | + |
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Preference number: 2 (lower is better) Translates to: VFSPTVLQACSVFHWLPSCWMFH*HFLLFN Trigger: GTTAAATAGGAGGAAGTGGCAATGGAACATCCAACA...AGAAGGAAGCCAGTGAAATACAGAGCAGGCCTGCAGCACCGTGGGAGAGAATAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000175810.2 |
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| 3UTR-3UTR TCA 90 bp | TACTATGTGTGGGCTGTTAAGAGTCCAGAGGAACTTCACAGTATTCTCTCCCACTCTAAGCGTCCACACTaGAGTTTAGAGTTCTCCATT | + |
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Preference number: 2 (lower is better) Translates to: YYVWAVKSPEELHSILSHSKRPH*SLEFSI Trigger: AATGGAGAACTCTAAACTTCAGTGTGGACGCTTAGA...GTGGGAGAGAATACTGTGAAGTTCCTCTGGACTCTTAACAGCCCACACATAGTA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000175810.2 |
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| 3UTR-3UTR TCA 90 bp | TACTATGTGTGGGCTGTTAAGAGTCCAGAGGAACTTCACAGTATTCTCTCCCACTATAAGGACTCAATTTaGGCTTCTAAGCGTCCACAC | + |
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Preference number: 2 (lower is better) Translates to: YYVWAVKSPEELHSILSHYKDSI*ASKRPH Trigger: GTGTGGACGCTTAGAAGCTCAAATTGAGTCCTTATA...GTGGGAGAGAATACTGTGAAGTTCCTCTGGACTCTTAACAGCCCACACATAGTA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000175810.2 |
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| 3UTR-3UTR TCA 90 bp | GGATGTTCCATTGCCACTTCCTCCTATTTAACTGAATCTTGTTCATCTGACAATTGTGCAGTTCCCTTGTaGATCTTGGAGGTTTTCCAT | + |
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Preference number: 2 (lower is better) Translates to: GCSIATSSYLTESCSSDNCAVPL*ILEVFH Trigger: ATGGAAAACCTCCAAGATTCACAAGGGAACTGCACA...ATTGTCAGATGAACAAGATTCAGTTAAATAGGAGGAAGTGGCAATGGAACATCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000175810.2 |
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| 3UTR-3UTR TCA 90 bp | GAAAGATGCACATACAGTGTTCTGCTAGTTTCCTGTAAACACTGCTTTTGTCTAGACAATATCTGTCATTaGGACAGGCCTCTGATACTA | + |
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Preference number: 2 (lower is better) Translates to: ERCTYSVLLVSCKHCFCLDNICH*DRPLIL Trigger: TAGTATCAGAGGCCTGTCTCAATGACAGATATTGTC...TAGACAAAAGCAGTGTTTACAGGAAACTAGCAGAACACTGTATGTGCATCTTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048208.10 ENSMUST00000095625.11 |
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| 3UTR GCA 72 bp | TCCAGAGGAACTTCACAGTATTCTCTCCCACGGTGCTaGAGGCCTGCTCTGTATTTCACTGGCTTCCTTCTC | + |
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Preference number: 3 (lower is better) Translates to: SRGTSQYSLPRC*RPALYFTGFLL Trigger: GAGAAGGAAGCCAGTGAAATACAGAGCAGGCCTGCAGCACCGTGGGAGAGAATACTGTGAAGTTCCTCTGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000175810.2 |
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| 3UTR GCA 72 bp | GAGTCCAGAGGAACTTCACAGTATTCTCTCCCACGGTaGTGCAGGCCTGCTCTGTATTTCACTGGCTTCCTT | + |
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Preference number: 3 (lower is better) Translates to: ESRGTSQYSLPR*CRPALYFTGFL Trigger: AAGGAAGCCAGTGAAATACAGAGCAGGCCTGCAGCACCGTGGGAGAGAATACTGTGAAGTTCCTCTGGACTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000175810.2 |
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| 3UTR-3UTR CAA 90 bp | CAGTATTCTCTCCCACGGTGCTGCAGGCCTGCTCTGTATTTCACTGGCTTCCTTCTTCCTGTATTTGTATaGTGCAGTTCCCTTGTGAAT | + |
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Preference number: 3 (lower is better) Translates to: QYSLPRCCRPALYFTGFLLPVFV*CSSLVN Trigger: ATTCACAAGGGAACTGCACAATACAAATACAGGAAG...AAGGAAGCCAGTGAAATACAGAGCAGGCCTGCAGCACCGTGGGAGAGAATACTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000175810.2 |
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| 3UTR-3UTR CAA 90 bp | GTATTCTCTCCCACGGTGCTGCAGGCCTGCTCTGTATTTCACTGGCTTCCTTCTAGCAATAGTCGCTATTaGTTTTTCAAGCTCATGAAG | + |
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Preference number: 3 (lower is better) Translates to: VFSPTVLQACSVFHWLPSSNSRY*FFKLMK Trigger: CTTCATGAGCTTGAAAAACAAATAGCGACTATTGCT...AGAAGGAAGCCAGTGAAATACAGAGCAGGCCTGCAGCACCGTGGGAGAGAATAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000175810.2 |
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| 3UTR-3UTR CAA 90 bp | GTATTCTCTCCCACGGTGCTGCAGGCCTGCTCTGTATTTCACTGGCTTCCTTCTCTCCTCAAATTTTTCTaGGGCTGTTTCTGTATCAAA | + |
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Preference number: 3 (lower is better) Translates to: VFSPTVLQACSVFHWLPSLLKFF*GCFCIK Trigger: TTTGATACAGAAACAGCCCAAGAAAAATTTGAGGAG...AGAAGGAAGCCAGTGAAATACAGAGCAGGCCTGCAGCACCGTGGGAGAGAATAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000175810.2 |
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| 3UTR-3UTR CAA 90 bp | ACTATGTGTGGGCTGTTAAGAGTCCAGAGGAACTTCACAGTATTCTCTCCCACGAGACAATATCTGTCATaGAGACAGGCCTCTGATACT | + |
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Preference number: 3 (lower is better) Translates to: TMCGLLRVQRNFTVFSPTRQYLS*RQASDT Trigger: AGTATCAGAGGCCTGTCTCAATGACAGATATTGTCT...CGTGGGAGAGAATACTGTGAAGTTCCTCTGGACTCTTAACAGCCCACACATAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000175810.2 |
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| 3UTR TCA 72 bp | AGGAAAAAGACAATATCTGTCATTGAGACAGGCCTCTaGTACTATGTGTGGGCTGTTAAGAGTCCAGAGGAA | + |
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Preference number: 3 (lower is better) Translates to: RKKTISVIETGL*YYVWAVKSPEE Trigger: TTCCTCTGGACTCTTAACAGCCCACACATAGTATCAGAGGCCTGTCTCAATGACAGATATTGTCTTTTTCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000048208.10 ENSMUST00000095625.11 ENSMUST00000175810.2 |
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| 3UTR GCA 72 bp | TTAGAGTTCTCCATTGCAGCATCTTGCCGATGCATTTaGCTGTCTGTTTCTTTAGCTTCTTCAGCAATAGTC | + |
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Preference number: 3 (lower is better) Translates to: LEFSIAASCRCI*LSVSLASSAIV Trigger: GACTATTGCTGAAGAAGCTAAAGAAACAGACAGGCAAATGCATCGGCAAGATGCTGCAATGGAGAACTCTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000175810.2 |
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| 3UTR GCA 72 bp | TGCACATACAGTGTTCTGCTAGTTTCCTGTAAACACTaGTTTTGTCTACCTAGTGCTATGCACTATAGACAG | + |
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Preference number: 3 (lower is better) Translates to: CTYSVLLVSCKH*FCLPSAMHYRQ Trigger: CTGTCTATAGTGCATAGCACTAGGTAGACAAAAGCAGTGTTTACAGGAAACTAGCAGAACACTGTATGTGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048208.10 ENSMUST00000095625.11 |
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| 3UTR-3UTR CAA 90 bp | GAAAGATGCACATACAGTGTTCTGCTAGTTTCCTGTAAACACTGCTTTTGTCTAAGACAATATCTGTCATaGAGACAGGCCTCTGATACT | + |
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Preference number: 3 (lower is better) Translates to: ERCTYSVLLVSCKHCFCLRQYLS*RQASDT Trigger: AGTATCAGAGGCCTGTCTCAATGACAGATATTGTCT...TAGACAAAAGCAGTGTTTACAGGAAACTAGCAGAACACTGTATGTGCATCTTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048208.10 ENSMUST00000095625.11 |
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| 3UTR TCA 72 bp | AATGTCTTCCTGTATTTGTATTGTGCAGTTCCCTTGTaGATCTTGGAGGTTTTCCATAAGATCTTCTTTCAT | + |
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Preference number: 3 (lower is better) Translates to: NVFLYLYCAVPL*ILEVFHKIFFH Trigger: ATGAAAGAAGATCTTATGGAAAACCTCCAAGATTCACAAGGGAACTGCACAATACAAATACAGGAAGACATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000175810.2 |
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| CDS-3UTR GCA 90 bp | GAAAGATGCACATACAGTGTTCTGCTAGTTTCCTGTAAACACTGCTTTTGTCTAACGGTGCTGCAGGCCTaGTCTGTATTTCACTGGCTT | + |
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Preference number: 4 (lower is better) Translates to: ERCTYSVLLVSCKHCFCLTVLQA*SVFHWL Trigger: AAGCCAGTGAAATACAGAGCAGGCCTGCAGCACCGT...TAGACAAAAGCAGTGTTTACAGGAAACTAGCAGAACACTGTATGTGCATCTTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048208.10 ENSMUST00000095625.11 |
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| 3UTR CAA 72 bp | TCCACACTGAAGTTTAGAGTTCTCCATTGCAGCATCTaGCCGATGCATTTGCCTGTCTGTTTCTTTAGCTTC | + |
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Preference number: 4 (lower is better) Translates to: STLKFRVLHCSI*PMHLPVCFFSF Trigger: GAAGCTAAAGAAACAGACAGGCAAATGCATCGGCAAGATGCTGCAATGGAGAACTCTAAACTTCAGTGTGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000175810.2 |
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| CDS-3UTR GCA 90 bp | TACTATGTGTGGGCTGTTAAGAGTCCAGAGGAACTTCACAGTATTCTCTCCCACTGTTGTTTGGCGACTTaGTCTACAGCATCAGTTAAT | + |
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Preference number: 4 (lower is better) Translates to: YYVWAVKSPEELHSILSHCCLAT*STASVN Trigger: ATTAACTGATGCTGTAGAGCAAGTCGCCAAACAACA...GTGGGAGAGAATACTGTGAAGTTCCTCTGGACTCTTAACAGCCCACACATAGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000175810.2 |
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| 3UTR CAA 72 bp | AGCGGAGGAAGAAAAGGAAAAAGACAATATCTGTCATaGAGACAGGCCTCTGATACTATGTGTGGGCTGTTA | + |
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Preference number: 4 (lower is better) Translates to: SGGRKGKRQYLS*RQASDTMCGLL Trigger: TAACAGCCCACACATAGTATCAGAGGCCTGTCTCAATGACAGATATTGTCTTTTTCCTTTTCTTCCTCCGCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000048208.10 ENSMUST00000095625.11 ENSMUST00000175810.2 |
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| CDS-3UTR TCA 90 bp | GAAAGATGCACATACAGTGTTCTGCTAGTTTCCTGTAAACACTGCTTTTGTCTATGTGCAGTTCCCTTGTaGATCTTGGAGGTTTTCCAT | + |
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Preference number: 4 (lower is better) Translates to: ERCTYSVLLVSCKHCFCLCAVPL*ILEVFH Trigger: ATGGAAAACCTCCAAGATTCACAAGGGAACTGCACA...TAGACAAAAGCAGTGTTTACAGGAAACTAGCAGAACACTGTATGTGCATCTTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048208.10 |
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| CDS-3UTR GCA 90 bp | GTTGGATGTTCCATTGCCACTTCCTCCTATTTAACTGAATCTTGTTCATCTGACGCTCTCCTCGAGAACTaGAACTGGAACAGAATTTTT | + |
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Preference number: 4 (lower is better) Translates to: VGCSIATSSYLTESCSSDALLEN*NWNRIF Trigger: AAAAATTCTGTTCCAGTTGCAGTTCTCGAGGAGAGC...GTCAGATGAACAAGATTCAGTTAAATAGGAGGAAGTGGCAATGGAACATCCAAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000175810.2 |
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| CDS-3UTR CCA 90 bp | GAAAGATGCACATACAGTGTTCTGCTAGTTTCCTGTAAACACTGCTTTTGTCTAGTGACTGTTGTTGTTTaGCGACTTGCTCTACAGCAT | + |
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Preference number: 4 (lower is better) Translates to: ERCTYSVLLVSCKHCFCLVTVVV*RLALQH Trigger: ATGCTGTAGAGCAAGTCGCCAAACAACAACAGTCAC...TAGACAAAAGCAGTGTTTACAGGAAACTAGCAGAACACTGTATGTGCATCTTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048208.10 ENSMUST00000095625.11 |
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| CDS-3UTR TCA 90 bp | GAAAGATGCACATACAGTGTTCTGCTAGTTTCCTGTAAACACTGCTTTTGTCTATCTAAGCGTCCACACTaGAGTTTAGAGTTCTCCATT | + |
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Preference number: 4 (lower is better) Translates to: ERCTYSVLLVSCKHCFCLSKRPH*SLEFSI Trigger: AATGGAGAACTCTAAACTTCAGTGTGGACGCTTAGA...TAGACAAAAGCAGTGTTTACAGGAAACTAGCAGAACACTGTATGTGCATCTTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048208.10 |
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| CDS-3UTR TCA 90 bp | GAAAGATGCACATACAGTGTTCTGCTAGTTTCCTGTAAACACTGCTTTTGTCTATATAAGGACTCAATTTaGGCTTCTAAGCGTCCACAC | + |
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Preference number: 4 (lower is better) Translates to: ERCTYSVLLVSCKHCFCLYKDSI*ASKRPH Trigger: GTGTGGACGCTTAGAAGCTCAAATTGAGTCCTTATA...TAGACAAAAGCAGTGTTTACAGGAAACTAGCAGAACACTGTATGTGCATCTTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048208.10 |
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| CDS-3UTR GCA 90 bp | GAAAGATGCACATACAGTGTTCTGCTAGTTTCCTGTAAACACTGCTTTTGTCTATCTTGCCGATGCATTTaGCTGTCTGTTTCTTTAGCT | + |
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Preference number: 4 (lower is better) Translates to: ERCTYSVLLVSCKHCFCLSCRCI*LSVSLA Trigger: AGCTAAAGAAACAGACAGGCAAATGCATCGGCAAGA...TAGACAAAAGCAGTGTTTACAGGAAACTAGCAGAACACTGTATGTGCATCTTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048208.10 |
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| CDS-3UTR GCA 90 bp | GAAAGATGCACATACAGTGTTCTGCTAGTTTCCTGTAAACACTGCTTTTGTCTATTTAGAGTTCTCCATTaGAGCATCTTGCCGATGCAT | + |
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Preference number: 4 (lower is better) Translates to: ERCTYSVLLVSCKHCFCLFRVLH*SILPMH Trigger: ATGCATCGGCAAGATGCTGCAATGGAGAACTCTAAA...TAGACAAAAGCAGTGTTTACAGGAAACTAGCAGAACACTGTATGTGCATCTTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048208.10 |
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| CDS-3UTR CCA 90 bp | TTGCCTGTCTGTTTCTTTAGCTTCTTCAGCAATAGTCGCTATTTGTTTTTCAAGGTGACTGTTGTTGTTTaGCGACTTGCTCTACAGCAT | + |
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Preference number: 4 (lower is better) Translates to: LPVCFFSFFSNSRYLFFKVTVVV*RLALQH Trigger: ATGCTGTAGAGCAAGTCGCCAAACAACAACAGTCAC...CTTGAAAAACAAATAGCGACTATTGCTGAAGAAGCTAAAGAAACAGACAGGCAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000175810.2 |
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| CDS-3UTR GCA 90 bp | GAAAGATGCACATACAGTGTTCTGCTAGTTTCCTGTAAACACTGCTTTTGTCTAAGATGTGTCTTTGACTaGAGCTTTTGTAGGAATGAC | + |
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Preference number: 4 (lower is better) Translates to: ERCTYSVLLVSCKHCFCLRCVFD*SFCRND Trigger: GTCATTCCTACAAAAGCTGCAGTCAAAGACACATCT...TAGACAAAAGCAGTGTTTACAGGAAACTAGCAGAACACTGTATGTGCATCTTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048208.10 ENSMUST00000095625.11 |
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| CDS-3UTR GCA 90 bp | GGATGTTCCATTGCCACTTCCTCCTATTTAACTGAATCTTGTTCATCTGACAATAGATGTGTCTTTGACTaGAGCTTTTGTAGGAATGAC | + |
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Preference number: 4 (lower is better) Translates to: GCSIATSSYLTESCSSDNRCVFD*SFCRND Trigger: GTCATTCCTACAAAAGCTGCAGTCAAAGACACATCT...ATTGTCAGATGAACAAGATTCAGTTAAATAGGAGGAAGTGGCAATGGAACATCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000175810.2 |
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| CDS-3UTR GCA 90 bp | GAAAGATGCACATACAGTGTTCTGCTAGTTTCCTGTAAACACTGCTTTTGTCTATGTTGTTTGGCGACTTaGTCTACAGCATCAGTTAAT | + |
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Preference number: 4 (lower is better) Translates to: ERCTYSVLLVSCKHCFCLCCLAT*STASVN Trigger: ATTAACTGATGCTGTAGAGCAAGTCGCCAAACAACA...TAGACAAAAGCAGTGTTTACAGGAAACTAGCAGAACACTGTATGTGCATCTTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048208.10 ENSMUST00000095625.11 |
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| CDS-3UTR GCA 90 bp | GAAAGATGCACATACAGTGTTCTGCTAGTTTCCTGTAAACACTGCTTTTGTCTATGTTGGATGTTCCATTaGCACTTCCTCCTATTTAAC | + |
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Preference number: 4 (lower is better) Translates to: ERCTYSVLLVSCKHCFCLCWMFH*HFLLFN Trigger: GTTAAATAGGAGGAAGTGGCAATGGAACATCCAACA...TAGACAAAAGCAGTGTTTACAGGAAACTAGCAGAACACTGTATGTGCATCTTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048208.10 ENSMUST00000095625.11 |
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| CDS-3UTR GCA 90 bp | GAAAGATGCACATACAGTGTTCTGCTAGTTTCCTGTAAACACTGCTTTTGTCTACCTGTATTTGTATTGTaGAGTTCCCTTGTGAATCTT | + |
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Preference number: 4 (lower is better) Translates to: ERCTYSVLLVSCKHCFCLPVFVL*SSLVNL Trigger: AAGATTCACAAGGGAACTGCACAATACAAATACAGG...TAGACAAAAGCAGTGTTTACAGGAAACTAGCAGAACACTGTATGTGCATCTTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048208.10 |
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| CDS-3UTR CCA 90 bp | GAAAGATGCACATACAGTGTTCTGCTAGTTTCCTGTAAACACTGCTTTTGTCTATTCCCTTGTGAATCTTaGAGGTTTTCCATAAGATCT | + |
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Preference number: 4 (lower is better) Translates to: ERCTYSVLLVSCKHCFCLFPCES*RFSIRS Trigger: AGATCTTATGGAAAACCTCCAAGATTCACAAGGGAA...TAGACAAAAGCAGTGTTTACAGGAAACTAGCAGAACACTGTATGTGCATCTTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048208.10 |
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| CDS-3UTR GCA 90 bp | GAAAGATGCACATACAGTGTTCTGCTAGTTTCCTGTAAACACTGCTTTTGTCTACTCTTATGTTGTACCTaGAACTGGAACAGAATTTTT | + |
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Preference number: 4 (lower is better) Translates to: ERCTYSVLLVSCKHCFCLLLCCT*NWNRIF Trigger: AAAAATTCTGTTCCAGTTGCAGGTACAACATAAGAG...TAGACAAAAGCAGTGTTTACAGGAAACTAGCAGAACACTGTATGTGCATCTTTC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095625.11 |
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| CDS-3UTR CAA 90 bp | GTATTCTCTCCCACGGTGCTGCAGGCCTGCTCTGTATTTCACTGGCTTCCTTCTAATGCAGATGTGTCTTaGACTGCAGCTTTTGTAGGA | + |
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Preference number: 5 (lower is better) Translates to: VFSPTVLQACSVFHWLPSNADVS*TAAFVG Trigger: TCCTACAAAAGCTGCAGTCAAAGACACATCTGCATT...AGAAGGAAGCCAGTGAAATACAGAGCAGGCCTGCAGCACCGTGGGAGAGAATAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000175810.2 |
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| CDS-3UTR CAA 90 bp | GAAAGATGCACATACAGTGTTCTGCTAGTTTCCTGTAAACACTGCTTTTGTCTAATCTTGCCGATGCATTaGCCTGTCTGTTTCTTTAGC | + |
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Preference number: 5 (lower is better) Translates to: ERCTYSVLLVSCKHCFCLILPMH*PVCFFS Trigger: GCTAAAGAAACAGACAGGCAAATGCATCGGCAAGAT...TAGACAAAAGCAGTGTTTACAGGAAACTAGCAGAACACTGTATGTGCATCTTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048208.10 |
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| CDS-3UTR CAA 90 bp | GAAAGATGCACATACAGTGTTCTGCTAGTTTCCTGTAAACACTGCTTTTGTCTAAATGCAGATGTGTCTTaGACTGCAGCTTTTGTAGGA | + |
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Preference number: 5 (lower is better) Translates to: ERCTYSVLLVSCKHCFCLNADVS*TAAFVG Trigger: TCCTACAAAAGCTGCAGTCAAAGACACATCTGCATT...TAGACAAAAGCAGTGTTTACAGGAAACTAGCAGAACACTGTATGTGCATCTTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048208.10 ENSMUST00000095625.11 |
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| CDS-3UTR CAA 90 bp | GAAAGATGCACATACAGTGTTCTGCTAGTTTCCTGTAAACACTGCTTTTGTCTACTTCCTGTATTTGTATaGTGCAGTTCCCTTGTGAAT | + |
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Preference number: 5 (lower is better) Translates to: ERCTYSVLLVSCKHCFCLLPVFV*CSSLVN Trigger: ATTCACAAGGGAACTGCACAATACAAATACAGGAAG...TAGACAAAAGCAGTGTTTACAGGAAACTAGCAGAACACTGTATGTGCATCTTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048208.10 |
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| CDS-3UTR CAA 90 bp | GAAAGATGCACATACAGTGTTCTGCTAGTTTCCTGTAAACACTGCTTTTGTCTAAATGTCTTCCTGTATTaGTATTGTGCAGTTCCCTTG | + |
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Preference number: 5 (lower is better) Translates to: ERCTYSVLLVSCKHCFCLNVFLY*YCAVPL Trigger: CAAGGGAACTGCACAATACAAATACAGGAAGACATT...TAGACAAAAGCAGTGTTTACAGGAAACTAGCAGAACACTGTATGTGCATCTTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048208.10 |
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| CDS-3UTR CAA 90 bp | GAAAGATGCACATACAGTGTTCTGCTAGTTTCCTGTAAACACTGCTTTTGTCTAAGCAATAGTCGCTATTaGTTTTTCAAGCTCATGAAG | + |
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Preference number: 5 (lower is better) Translates to: ERCTYSVLLVSCKHCFCLSNSRY*FFKLMK Trigger: CTTCATGAGCTTGAAAAACAAATAGCGACTATTGCT...TAGACAAAAGCAGTGTTTACAGGAAACTAGCAGAACACTGTATGTGCATCTTTC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048208.10 |
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| CDS-3UTR CAA 90 bp | GAAAGATGCACATACAGTGTTCTGCTAGTTTCCTGTAAACACTGCTTTTGTCTACTCCTCAAATTTTTCTaGGGCTGTTTCTGTATCAAA | + |
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Preference number: 5 (lower is better) Translates to: ERCTYSVLLVSCKHCFCLLLKFF*GCFCIK Trigger: TTTGATACAGAAACAGCCCAAGAAAAATTTGAGGAG...TAGACAAAAGCAGTGTTTACAGGAAACTAGCAGAACACTGTATGTGCATCTTTC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048208.10 |
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| CDS GCA 72 bp | ATTTCTGATGTTTGTGACTGTTGTTGTTTGGCGACTTaGTCTACAGCATCAGTTAATGCAGATGTGTCTTTG | + |
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Preference number: 6 (lower is better) Translates to: ISDVCDCCCLAT*STASVNADVSL Trigger: CAAAGACACATCTGCATTAACTGATGCTGTAGAGCAAGTCGCCAAACAACAACAGTCACAAACATCAGAAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000048208.10 ENSMUST00000095625.11 ENSMUST00000175810.2 |
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| CDS CAA 90 bp | CATTTGCCTGTCTGTTTCTTTAGCTTCTTCAGCAATAGTCGCTATTaGTTTTTCAAGCTCATGAAGTTCAATCTGCAACTGGAACAGAAT | + |
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Preference number: 6 (lower is better) Translates to: HLPVCFFSFFSNSRY*FFKLMKFNLQLEQN Trigger: ATTCTGTTCCAGTTGCAGATTGAACTTCATGAGCTTGAAAAACAAATAGCGACTATTGCTGAAGAAGCTAAAGAAACAGACAGGCAAATG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048208.10 |
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| CDS CAA 72 bp | GTCTGTTTCTTTAGCTTCTTCAGCAATAGTCGCTATTaGTTTTTCAAGCTCATGAAGTTCAATCTGCAACTG | + |
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Preference number: 6 (lower is better) Translates to: VCFFSFFSNSRY*FFKLMKFNLQL Trigger: CAGTTGCAGATTGAACTTCATGAGCTTGAAAAACAAATAGCGACTATTGCTGAAGAAGCTAAAGAAACAGAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048208.10 |
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