Pregenerated sensors for CCDC12 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019659Ensembl transcript IDs: ENSMUST00000019803.9, ENSMUST00000196347.5, ENSMUST00000200296.2
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGACACGGACAACATGTCAGTCAGAGTCACAAGCCTCTTGTCCGGTaGTGGCATCCACTGCAGAGGCCAGGCTGTCCTCCTGGCCTTTTA | + |
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Preference number: 1 (lower is better) Translates to: GHGQHVSQSHKPLVR*WHPLQRPGCPPGLL Trigger: TAAAAGGCCAGGAGGACAGCCTGGCCTCTGCAGTGGATGCCACCACCGGACAAGAGGCTTGTGACTCTGACTGACATGTTGTCCGTGTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200296.2 |
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| 3UTR CCA 90 bp | TTGCATACATATGTACAGATCCCAGCTTTGAGCCACTCGGCGTGGTaGGCACCCTTGGGCGATGAACAGGTCACACCAACAGAAACTGAG | + |
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Preference number: 1 (lower is better) Translates to: LHTYVQIPALSHSAW*APLGDEQVTPTETE Trigger: CTCAGTTTCTGTTGGTGTGACCTGTTCATCGCCCAAGGGTGCCCACCACGCCGAGTGGCTCAAAGCTGGGATCTGTACATATGTATGCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019803.9 ENSMUST00000200296.2 |
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| 3UTR CAA 90 bp | ATCAGATGGGACACGGACAACATGTCAGTCAGAGTCACAAGCCTCTaGTCCGGTGGTGGCATCCACTGCAGAGGCCAGGCTGTCCTCCTG | + |
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Preference number: 2 (lower is better) Translates to: IRWDTDNMSVRVTSL*SGGGIHCRGQAVLL Trigger: CAGGAGGACAGCCTGGCCTCTGCAGTGGATGCCACCACCGGACAAGAGGCTTGTGACTCTGACTGACATGTTGTCCGTGTCCCATCTGAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200296.2 |
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| 3UTR-3UTR TCA 90 bp | CCTGAGACCATCTTCCCACAGGATGTGTGTGCTGAACAGATCAGATGGGACACGAACCCCCTCCCTGCCTaGGACCATCTTCCCACAGGA | + |
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Preference number: 2 (lower is better) Translates to: PETIFPQDVCAEQIRWDTNPLPA*DHLPTG Trigger: TCCTGTGGGAAGATGGTCTCAGGCAGGGAGGGGGTT...CGTGTCCCATCTGATCTGTTCAGCACACACATCCTGTGGGAAGATGGTCTCAGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000019803.9 ENSMUST00000200296.2 |
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| 3UTR-3UTR TCA 90 bp | TTGGCTCAGTTCTCAAGACCCAGAAGTACTGGCCAGCCTAACCCCCTCCCTGCCACAGGATGTGTGTGCTaGACAGATCAGATGGGACAC | + |
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Preference number: 2 (lower is better) Translates to: LAQFSRPRSTGQPNPLPATGCVC*TDQMGH Trigger: GTGTCCCATCTGATCTGTTCAGCACACACATCCTGT...GGCAGGGAGGGGGTTAGGCTGGCCAGTACTTCTGGGTCTTGAGAACTGAGCCAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000019803.9 ENSMUST00000200296.2 |
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| 3UTR-3UTR GCA 90 bp | AAAGCTCAGTTTGCATACATATGTACAGATCCCAGCTTTGAGCCACTCGGCGTGGGTGGTGGCATCCACTaGAGAGGCCAGGCTGTCCTC | + |
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Preference number: 2 (lower is better) Translates to: KAQFAYICTDPSFEPLGVGGGIH*RGQAVL Trigger: GAGGACAGCCTGGCCTCTGCAGTGGATGCCACCACC...CACGCCGAGTGGCTCAAAGCTGGGATCTGTACATATGTATGCAAACTGAGCTTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200296.2 |
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| 3UTR-3UTR CCA 90 bp | TCACACCAACAGAAACTGAGACTCAGTAGGTTGGCTCAGTTCTCAAGACCCAGACCTCTTGTCCGGTGGTaGCATCCACTGCAGAGGCCA | + |
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Preference number: 2 (lower is better) Translates to: SHQQKLRLSRLAQFSRPRPLVRW*HPLQRP Trigger: TGGCCTCTGCAGTGGATGCCACCACCGGACAAGAGG...TCTGGGTCTTGAGAACTGAGCCAACCTACTGAGTCTCAGTTTCTGTTGGTGTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200296.2 |
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| 3UTR-3UTR TCA 90 bp | CACCAACAGAAACTGAGACTCAGTAGGTTGGCTCAGTTCTCAAGACCCAGAAGTACAGGATGTGTGTGCTaGACAGATCAGATGGGACAC | + |
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Preference number: 2 (lower is better) Translates to: HQQKLRLSRLAQFSRPRSTGCVC*TDQMGH Trigger: GTGTCCCATCTGATCTGTTCAGCACACACATCCTGT...ACTTCTGGGTCTTGAGAACTGAGCCAACCTACTGAGTCTCAGTTTCTGTTGGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019803.9 ENSMUST00000200296.2 |
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| 3UTR CCA 72 bp | CATGTCAGTCAGAGTCACAAGCCTCTTGTCCGGTGGTaGCATCCACTGCAGAGGCCAGGCTGTCCTCCTGGC | + |
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Preference number: 3 (lower is better) Translates to: HVSQSHKPLVRW*HPLQRPGCPPG Trigger: GCCAGGAGGACAGCCTGGCCTCTGCAGTGGATGCCACCACCGGACAAGAGGCTTGTGACTCTGACTGACATG 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200296.2 |
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| 3UTR CCA 72 bp | TATGTACAGATCCCAGCTTTGAGCCACTCGGCGTGGTaGGCACCCTTGGGCGATGAACAGGTCACACCAACA | + |
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Preference number: 3 (lower is better) Translates to: YVQIPALSHSAW*APLGDEQVTPT Trigger: TGTTGGTGTGACCTGTTCATCGCCCAAGGGTGCCCACCACGCCGAGTGGCTCAAAGCTGGGATCTGTACATA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019803.9 ENSMUST00000200296.2 |
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| 3UTR TCA 72 bp | AGCTCAGTTTGCATACATATGTACAGATCCCAGCTTTaGGCCACTCGGCGTGGTGGGCACCCTTGGGCGATG | + |
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Preference number: 3 (lower is better) Translates to: SSVCIHMYRSQL*ATRRGGHPWAM Trigger: CATCGCCCAAGGGTGCCCACCACGCCGAGTGGCTCAAAGCTGGGATCTGTACATATGTATGCAAACTGAGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019803.9 ENSMUST00000200296.2 |
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| 3UTR CCA 72 bp | ATCTTCCCACAGGATGTGTGTGCTGAACAGATCAGATaGGACACGGACAACATGTCAGTCAGAGTCACAAGC | + |
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Preference number: 3 (lower is better) Translates to: IFPQDVCAEQIR*DTDNMSVRVTS Trigger: GCTTGTGACTCTGACTGACATGTTGTCCGTGTCCCATCTGATCTGTTCAGCACACACATCCTGTGGGAAGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200296.2 |
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| CDS-3UTR TCA 90 bp | ACAAGCCTCTTGTCCGGTGGTGGCATCCACTGCAGAGGCCAGGCTGTCCTCCTGCTGAAGCCACTGTCCTaGGGGCAGGACCCAGCCCAC | + |
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Preference number: 4 (lower is better) Translates to: TSLLSGGGIHCRGQAVLLLKPLS*GQDPAH Trigger: GTGGGCTGGGTCCTGCCCTCAGGACAGTGGCTTCAG...CAGGAGGACAGCCTGGCCTCTGCAGTGGATGCCACCACCGGACAAGAGGCTTGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200296.2 |
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| CDS-3UTR CCA 90 bp | ACCCCCTCCCTGCCTGAGACCATCTTCCCACAGGATGTGTGTGCTGAACAGATCCCACTGCCACTGGTTTaGCCTGGGGGACCCGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: TPSLPETIFPQDVCAEQIPLPLV*PGGPAS Trigger: GGAGGCGGGTCCCCCAGGCCAAACCAGTGGCAGTGG...GATCTGTTCAGCACACACATCCTGTGGGAAGATGGTCTCAGGCAGGGAGGGGGT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000019803.9 |
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| CDS-3UTR CCA 90 bp | AGGTTGGCTCAGTTCTCAAGACCCAGAAGTACTGGCCAGCCTAACCCCCTCCCTGCCACTGGTTTGGCCTaGGGGACCCGCCTCCTCTTC | + |
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Preference number: 4 (lower is better) Translates to: RLAQFSRPRSTGQPNPLPATGLA*GTRLLF Trigger: GAAGAGGAGGCGGGTCCCCCAGGCCAAACCAGTGGC...AGGGAGGGGGTTAGGCTGGCCAGTACTTCTGGGTCTTGAGAACTGAGCCAACCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019803.9 |
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| CDS-3UTR GCA 90 bp | GCCACTCGGCGTGGTGGGCACCCTTGGGCGATGAACAGGTCACACCAACAGAAAAGCCTGAGTCCCCTGTaGTTCCCAACTTCCTCTCCC | + |
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Preference number: 4 (lower is better) Translates to: ATRRGGHPWAMNRSHQQKSLSPL*FPTSSP Trigger: GGGAGAGGAAGTTGGGAAGCACAGGGGACTCAGGCT...TTTCTGTTGGTGTGACCTGTTCATCGCCCAAGGGTGCCCACCACGCCGAGTGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019803.9 |
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| CDS-3UTR CCA 90 bp | AGCCTAACCCCCTCCCTGCCTGAGACCATCTTCCCACAGGATGTGTGTGCTGAAGCCAGGCTGTCCTCCTaGCCTTTTAGCCGCTCACGG | + |
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Preference number: 4 (lower is better) Translates to: SLTPSLPETIFPQDVCAEARLSS*PFSRSR Trigger: CCGTGAGCGGCTAAAAGGCCAGGAGGACAGCCTGGC...TTCAGCACACACATCCTGTGGGAAGATGGTCTCAGGCAGGGAGGGGGTTAGGCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019803.9 |
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| CDS-3UTR CCA 90 bp | GTACAGATCCCAGCTTTGAGCCACTCGGCGTGGTGGGCACCCTTGGGCGATGAAAAGCCTCTTGTCCGGTaGTGGCATCCACTGCAGAGG | + |
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Preference number: 4 (lower is better) Translates to: VQIPALSHSAWWAPLGDEKPLVR*WHPLQR Trigger: CCTCTGCAGTGGATGCCACCACCGGACAAGAGGCTT...TTCATCGCCCAAGGGTGCCCACCACGCCGAGTGGCTCAAAGCTGGGATCTGTAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019803.9 |
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| CDS-3UTR TCA 90 bp | TGTCAGTCAGAGTCACAAGCCTCTTGTCCGGTGGTGGCATCCACTGCAGAGGCCGGTCCACTTCCTCAATaGCAGGCTCTGGCTTGGCTG | + |
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Preference number: 4 (lower is better) Translates to: CQSESQASCPVVASTAEAGPLPQ*QALAWL Trigger: CAGCCAAGCCAGAGCCTGTCATTGAGGAAGTGGACC...GGCCTCTGCAGTGGATGCCACCACCGGACAAGAGGCTTGTGACTCTGACTGACA 59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200296.2 |
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| CDS-3UTR CCA 90 bp | CTGCCTGAGACCATCTTCCCACAGGATGTGTGTGCTGAACAGATCAGATGGGACCTCCTCCACTGCCACTaGTTTGGCCTGGGGGACCCG | + |
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Preference number: 4 (lower is better) Translates to: LPETIFPQDVCAEQIRWDLLHCH*FGLGDP Trigger: CGGGTCCCCCAGGCCAAACCAGTGGCAGTGGAGGAG...GTCCCATCTGATCTGTTCAGCACACACATCCTGTGGGAAGATGGTCTCAGGCAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019803.9 |
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| CDS-3UTR TCA 90 bp | AGGTTGGCTCAGTTCTCAAGACCCAGAAGTACTGGCCAGCCTAACCCCCTCCCTGGTCCACTTCCTCAATaGCAGGCTCTGGCTTGGCTG | + |
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Preference number: 4 (lower is better) Translates to: RLAQFSRPRSTGQPNPLPGPLPQ*QALAWL Trigger: CAGCCAAGCCAGAGCCTGTCATTGAGGAAGTGGACC...AGGGAGGGGGTTAGGCTGGCCAGTACTTCTGGGTCTTGAGAACTGAGCCAACCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000019803.9 ENSMUST00000200296.2 |
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| CDS-3UTR GCA 90 bp | AGCCTAACCCCCTCCCTGCCTGAGACCATCTTCCCACAGGATGTGTGTGCTGAACATCTTCCCTGTCCTTaGGCCCGGTTTTCTCCCGGA | + |
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Preference number: 4 (lower is better) Translates to: SLTPSLPETIFPQDVCAEHLPCP*ARFSPG Trigger: TCCGGGAGAAAACCGGGCGCAAGGACAGGGAAGATG...TTCAGCACACACATCCTGTGGGAAGATGGTCTCAGGCAGGGAGGGGGTTAGGCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019803.9 |
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| CDS-3UTR GCA 90 bp | CTGCCTGAGACCATCTTCCCACAGGATGTGTGTGCTGAACAGATCAGATGGGACGGTGGTGGCATCCACTaGAGAGGCCAGGCTGTCCTC | + |
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Preference number: 4 (lower is better) Translates to: LPETIFPQDVCAEQIRWDGGGIH*RGQAVL Trigger: GAGGACAGCCTGGCCTCTGCAGTGGATGCCACCACC...GTCCCATCTGATCTGTTCAGCACACACATCCTGTGGGAAGATGGTCTCAGGCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019803.9 |
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| 3UTR CAA 72 bp | GACACGGACAACATGTCAGTCAGAGTCACAAGCCTCTaGTCCGGTGGTGGCATCCACTGCAGAGGCCAGGCT | + |
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Preference number: 4 (lower is better) Translates to: DTDNMSVRVTSL*SGGGIHCRGQA Trigger: AGCCTGGCCTCTGCAGTGGATGCCACCACCGGACAAGAGGCTTGTGACTCTGACTGACATGTTGTCCGTGTC 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200296.2 |
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| CDS-3UTR TCA 90 bp | TCAGAGTCACAAGCCTCTTGTCCGGTGGTGGCATCCACTGCAGAGGCCAGGCTGTGGCCACATCTCTCTTaGGATCCCAATCAGGTTTCC | + |
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Preference number: 4 (lower is better) Translates to: SESQASCPVVASTAEARLWPHLS*DPNQVS Trigger: GGAAACCTGATTGGGATCTCAAGAGAGATGTGGCCA...CAGCCTGGCCTCTGCAGTGGATGCCACCACCGGACAAGAGGCTTGTGACTCTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200296.2 |
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| CDS-3UTR GCA 90 bp | CCTGAGACCATCTTCCCACAGGATGTGTGTGCTGAACAGATCAGATGGGACACGCACCTTCTCCTCCACTaGCACTGGTTTGGCCTGGGG | + |
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Preference number: 4 (lower is better) Translates to: PETIFPQDVCAEQIRWDTHLLLH*HWFGLG Trigger: CCCCAGGCCAAACCAGTGGCAGTGGAGGAGAAGGTG...CGTGTCCCATCTGATCTGTTCAGCACACACATCCTGTGGGAAGATGGTCTCAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019803.9 |
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| CDS-3UTR GCA 90 bp | GACTCAGTAGGTTGGCTCAGTTCTCAAGACCCAGAAGTACTGGCCAGCCTAACCAGGCTCTGGCTTGGCTaGCTCCAGCTGCTCCTTCAC | + |
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Preference number: 4 (lower is better) Translates to: DSVGWLSSQDPEVLASLTRLWLG*LQLLLH Trigger: GTGAAGGAGCAGCTGGAGGCAGCCAAGCCAGAGCCT...GGTTAGGCTGGCCAGTACTTCTGGGTCTTGAGAACTGAGCCAACCTACTGAGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019803.9 ENSMUST00000200296.2 |
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| CDS-3UTR CCA 90 bp | CCTGAGACCATCTTCCCACAGGATGTGTGTGCTGAACAGATCAGATGGGACACGTCCGGGGTGCCAGGTTaGCCAGGTCCACTTCCTCAA | + |
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Preference number: 4 (lower is better) Translates to: PETIFPQDVCAEQIRWDTSGVPG*PGPLPQ Trigger: TTGAGGAAGTGGACCTGGCCAACCTGGCACCCCGGA...CGTGTCCCATCTGATCTGTTCAGCACACACATCCTGTGGGAAGATGGTCTCAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019803.9 ENSMUST00000200296.2 |
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| CDS-3UTR CCA 90 bp | GACTCAGTAGGTTGGCTCAGTTCTCAAGACCCAGAAGTACTGGCCAGCCTAACCCCTCTTGTCCGGTGGTaGCATCCACTGCAGAGGCCA | + |
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Preference number: 4 (lower is better) Translates to: DSVGWLSSQDPEVLASLTPLVRW*HPLQRP Trigger: TGGCCTCTGCAGTGGATGCCACCACCGGACAAGAGG...GGTTAGGCTGGCCAGTACTTCTGGGTCTTGAGAACTGAGCCAACCTACTGAGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019803.9 |
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| 3UTR CAA 72 bp | AAGCTCAGTTTGCATACATATGTACAGATCCCAGCTTaGAGCCACTCGGCGTGGTGGGCACCCTTGGGCGAT | + |
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Preference number: 4 (lower is better) Translates to: KLSLHTYVQIPA*SHSAWWAPLGD Trigger: ATCGCCCAAGGGTGCCCACCACGCCGAGTGGCTCAAAGCTGGGATCTGTACATATGTATGCAAACTGAGCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019803.9 ENSMUST00000200296.2 |
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| CDS-3UTR CCA 90 bp | CTGAGACCATCTTCCCACAGGATGTGTGTGCTGAACAGATCAGATGGGACACGGCAGGTCTTCATCCTCTaGGACATAGTTCCGGAGCCT | + |
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Preference number: 4 (lower is better) Translates to: LRPSSHRMCVLNRSDGTRQVFIL*DIVPEP Trigger: AGGCTCCGGAACTATGTCCCAGAGGATGAAGACCTG...CCGTGTCCCATCTGATCTGTTCAGCACACACATCCTGTGGGAAGATGGTCTCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019803.9 |
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| CDS-3UTR TCA 90 bp | CTGCCTGAGACCATCTTCCCACAGGATGTGTGTGCTGAACAGATCAGATGGGACTGGCCACATCTCTCTTaGGATCCCAATCAGGTTTCC | + |
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Preference number: 4 (lower is better) Translates to: LPETIFPQDVCAEQIRWDWPHLS*DPNQVS Trigger: GGAAACCTGATTGGGATCTCAAGAGAGATGTGGCCA...GTCCCATCTGATCTGTTCAGCACACACATCCTGTGGGAAGATGGTCTCAGGCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019803.9 ENSMUST00000200296.2 |
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| CDS-3UTR GCA 90 bp | AAAAAGCTCAGTTTGCATACATATGTACAGATCCCAGCTTTGAGCCACTCGGCGTTGGCTGCCTCCAGCTaGTCCTTCACCTTCTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: KKLSLHTYVQIPALSHSALAASS*SFTFSS Trigger: GGAGGAGAAGGTGAAGGAGCAGCTGGAGGCAGCCAA...CGCCGAGTGGCTCAAAGCTGGGATCTGTACATATGTATGCAAACTGAGCTTTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000019803.9 ENSMUST00000200296.2 |
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| CDS GCA 90 bp | GGTCAGCAATGCCCAGAGAGACAGCAACTGCGACCACAGAAGCCTTaGGCCCGGTTTTCTCCCGGAGGGCCTTCAGCCGTTCTTTCCGCC | + |
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Preference number: 5 (lower is better) Translates to: GQQCPERQQLRPQKP*ARFSPGGPSAVLSA Trigger: GGCGGAAAGAACGGCTGAAGGCCCTCCGGGAGAAAACCGGGCGCAAGGCTTCTGTGGTCGCAGTTGCTGTCTCTCTGGGCATTGCTGACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196347.5 |
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| CDS TCA 90 bp | ATGGAGAGCAAACAAGTGGAAAGGGCTGTGCTGAAGCCACTGTCCTaGGGGCAGGACCCAGCCCACGGGGCAGCCGGCACTTACGGATCA | + |
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Preference number: 5 (lower is better) Translates to: MESKQVERAVLKPLS*GQDPAHGAAGTYGS Trigger: TGATCCGTAAGTGCCGGCTGCCCCGTGGGCTGGGTCCTGCCCTCAGGACAGTGGCTTCAGCACAGCCCTTTCCACTTGTTTGCTCTCCAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000200296.2 |
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| CDS GCA 90 bp | GTCTGCAGGATCCCAGAGGTCAGCAATGCCCAGAGAGACAGCAACTaGGACCACAGAAGCCTTGCGCCCGGTTTTCTCCCGGAGGGCCTT | + |
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Preference number: 5 (lower is better) Translates to: VCRIPEVSNAQRDSN*DHRSLAPGFLPEGL Trigger: AAGGCCCTCCGGGAGAAAACCGGGCGCAAGGCTTCTGTGGTCGCAGTTGCTGTCTCTCTGGGCATTGCTGACCTCTGGGATCCTGCAGAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196347.5 |
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| CDS-3UTR CAA 90 bp | CAGAAACTGAGACTCAGTAGGTTGGCTCAGTTCTCAAGACCCAGAAGTACTGGCTCCACTGCCACTGGTTaGGCCTGGGGGACCCGCCTC | + |
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Preference number: 5 (lower is better) Translates to: QKLRLSRLAQFSRPRSTGSTATG*AWGTRL Trigger: GAGGCGGGTCCCCCAGGCCAAACCAGTGGCAGTGGA...GCCAGTACTTCTGGGTCTTGAGAACTGAGCCAACCTACTGAGTCTCAGTTTCTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019803.9 |
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| CDS-3UTR CAA 90 bp | GCCACTCGGCGTGGTGGGCACCCTTGGGCGATGAACAGGTCACACCAACAGAAAAGCTTCTCTAGCTTCTaGGCCACATCTCTCTTGAGA | + |
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Preference number: 5 (lower is better) Translates to: ATRRGGHPWAMNRSHQQKSFSSF*ATSLLR Trigger: TCTCAAGAGAGATGTGGCCAAGAAGCTAGAGAAGCT...TTTCTGTTGGTGTGACCTGTTCATCGCCCAAGGGTGCCCACCACGCCGAGTGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019803.9 ENSMUST00000200296.2 |
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| CDS-3UTR CAA 90 bp | AAAGCTCAGTTTGCATACATATGTACAGATCCCAGCTTTGAGCCACTCGGCGTGCCATCTTCCCTGTCCTaGCGCCCGGTTTTCTCCCGG | + |
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Preference number: 5 (lower is better) Translates to: KAQFAYICTDPSFEPLGVPSSLS*RPVFSR Trigger: CCGGGAGAAAACCGGGCGCAAGGACAGGGAAGATGG...CACGCCGAGTGGCTCAAAGCTGGGATCTGTACATATGTATGCAAACTGAGCTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019803.9 |
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| CDS-3UTR CAA 90 bp | AGGTTGGCTCAGTTCTCAAGACCCAGAAGTACTGGCCAGCCTAACCCCCTCCCTTTGGCCACATCTCTCTaGAGATCCCAATCAGGTTTC | + |
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Preference number: 5 (lower is better) Translates to: RLAQFSRPRSTGQPNPLPLATSL*RSQSGF Trigger: GAAACCTGATTGGGATCTCAAGAGAGATGTGGCCAA...AGGGAGGGGGTTAGGCTGGCCAGTACTTCTGGGTCTTGAGAACTGAGCCAACCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000019803.9 ENSMUST00000200296.2 |
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| CDS-3UTR CAA 90 bp | CTGCCTGAGACCATCTTCCCACAGGATGTGTGTGCTGAACAGATCAGATGGGACTTGGCCACATCTCTCTaGAGATCCCAATCAGGTTTC | + |
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Preference number: 5 (lower is better) Translates to: LPETIFPQDVCAEQIRWDLATSL*RSQSGF Trigger: GAAACCTGATTGGGATCTCAAGAGAGATGTGGCCAA...GTCCCATCTGATCTGTTCAGCACACACATCCTGTGGGAAGATGGTCTCAGGCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019803.9 ENSMUST00000200296.2 |
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| CDS TCA 72 bp | AAACAAGTGGAAAGGGCTGTGCTGAAGCCACTGTCCTaGGGGCAGGACCCAGCCCACGGGGCAGCCGGCACT | + |
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Preference number: 6 (lower is better) Translates to: KQVERAVLKPLS*GQDPAHGAAGT Trigger: AGTGCCGGCTGCCCCGTGGGCTGGGTCCTGCCCTCAGGACAGTGGCTTCAGCACAGCCCTTTCCACTTGTTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000200296.2 |
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| CDS CAA 90 bp | AGGTCAGCAATGCCCAGAGAGACAGCAACTGCGACCACAGAAGCCTaGCGCCCGGTTTTCTCCCGGAGGGCCTTCAGCCGTTCTTTCCGC | + |
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Preference number: 6 (lower is better) Translates to: RSAMPRETATATTEA*RPVFSRRAFSRSFR Trigger: GCGGAAAGAACGGCTGAAGGCCCTCCGGGAGAAAACCGGGCGCAAGGCTTCTGTGGTCGCAGTTGCTGTCTCTCTGGGCATTGCTGACCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196347.5 |
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| CDS TCA 72 bp | TGGGACATAGTTCCGGAGCCTGAGTCCCAGGCCGGATaGGTCTGCAGGATCCCAGAGGTCAGCAATGCCCAG | + |
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Preference number: 6 (lower is better) Translates to: WDIVPEPESQAG*VCRIPEVSNAQ Trigger: CTGGGCATTGCTGACCTCTGGGATCCTGCAGACTCATCCGGCCTGGGACTCAGGCTCCGGAACTATGTCCCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196347.5 |
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| CDS GCA 72 bp | ATCCCAGAGGTCAGCAATGCCCAGAGAGACAGCAACTaGGACCACAGAAGCCTTGCGCCCGGTTTTCTCCCG | + |
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Preference number: 6 (lower is better) Translates to: IPEVSNAQRDSN*DHRSLAPGFLP Trigger: CGGGAGAAAACCGGGCGCAAGGCTTCTGTGGTCGCAGTTGCTGTCTCTCTGGGCATTGCTGACCTCTGGGAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196347.5 |
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| CDS GCA 72 bp | GGCCGGATGAGTCTGCAGGATCCCAGAGGTCAGCAATaGCCAGAGAGACAGCAACTGCGACCACAGAAGCCT | + |
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Preference number: 6 (lower is better) Translates to: GRMSLQDPRGQQ*PERQQLRPQKP Trigger: AGGCTTCTGTGGTCGCAGTTGCTGTCTCTCTGGGCATTGCTGACCTCTGGGATCCTGCAGACTCATCCGGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196347.5 |
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| CDS CAA 90 bp | GCCACATCTCTCTTGAGATCCCAATCAGGTTTCCGGGGTGCCAGGTaGGCCAGGTCCACTTCCTCAATGACAGGCTCTGGCTTGGCTGCC | + |
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Preference number: 6 (lower is better) Translates to: ATSLLRSQSGFRGAR*ARSTSSMTGSGLAA Trigger: GGCAGCCAAGCCAGAGCCTGTCATTGAGGAAGTGGACCTGGCCAACCTGGCACCCCGGAAACCTGATTGGGATCTCAAGAGAGATGTGGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000019803.9 ENSMUST00000196347.5 ENSMUST00000200296.2 |
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| CDS CAA 72 bp | CTCTTGAGATCCCAATCAGGTTTCCGGGGTGCCAGGTaGGCCAGGTCCACTTCCTCAATGACAGGCTCTGGC | + |
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Preference number: 6 (lower is better) Translates to: LLRSQSGFRGAR*ARSTSSMTGSG Trigger: GCCAGAGCCTGTCATTGAGGAAGTGGACCTGGCCAACCTGGCACCCCGGAAACCTGATTGGGATCTCAAGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000019803.9 ENSMUST00000196347.5 ENSMUST00000200296.2 |
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