Pregenerated sensors for CCDC117 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020482Ensembl transcript IDs: ENSMUST00000020776.5
Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ACAGCAGAGGAGACAGTCCAAAGACAGACGGACTCCTATGCCATCTaGAGGAGGGAGGCCAGCATGGGTTGCAAAACGCCAAGAAGCTAC | + |
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Preference number: 1 (lower is better) Translates to: TAEETVQRQTDSYAI*RREASMGCKTPRSY Trigger: GTAGCTTCTTGGCGTTTTGCAACCCATGCTGGCCTCCCTCCTGCAGATGGCATAGGAGTCCGTCTGTCTTTGGACTGTCTCCTCTGCTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| 3UTR CCA 90 bp | TACCAACTGCATCAAAGCCACTCGGGCCTTTCACAGAGGCAGTCCTaGTGTTTTAGGCCCTTTGGAAAGCTGCCACTACCTTCCTACCCT | + |
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Preference number: 1 (lower is better) Translates to: YQLHQSHSGLSQRQS*CFRPFGKLPLPSYP Trigger: AGGGTAGGAAGGTAGTGGCAGCTTTCCAAAGGGCCTAAAACACCAGGACTGCCTCTGTGAAAGGCCCGAGTGGCTTTGATGCAGTTGGTA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| 3UTR TCA 90 bp | CTGAGCCTATCCGTCATGAAAGGAGATCAAGGGCTACTACTTGGGTaGTCCAGCTACACCAACCTGACACCAACACAAGTTTCTTTGCTT | + |
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Preference number: 1 (lower is better) Translates to: LSLSVMKGDQGLLLG*SSYTNLTPTQVSLL Trigger: AAGCAAAGAAACTTGTGTTGGTGTCAGGTTGGTGTAGCTGGATCACCCAAGTAGTAGCCCTTGATCTCCTTTCATGACGGATAGGCTCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| 3UTR CCA 90 bp | CTAACTGAGCCTATCCGTCATGAAAGGAGATCAAGGGCTACTACTTaGGTGATCCAGCTACACCAACCTGACACCAACACAAGTTTCTTT | + |
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Preference number: 1 (lower is better) Translates to: LTEPIRHERRSRATT*VIQLHQPDTNTSFF Trigger: AAAGAAACTTGTGTTGGTGTCAGGTTGGTGTAGCTGGATCACCCAAGTAGTAGCCCTTGATCTCCTTTCATGACGGATAGGCTCAGTTAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| 3UTR CCA 90 bp | AGAGAGGAGAACAGAAGGCAAAGGTATCAGAGCTGTGGAGACAACTaGGTGTGTGTAAGCACCACAAGGATGAAGGTGATTTCTGTACAA | + |
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Preference number: 1 (lower is better) Translates to: REENRRQRYQSCGDN*VCVSTTRMKVISVQ Trigger: TTGTACAGAAATCACCTTCATCCTTGTGGTGCTTACACACACCCAGTTGTCTCCACAGCTCTGATACCTTTGCCTTCTGTTCTCCTCTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| 3UTR TCA 90 bp | AGCTTCCTTGGCAAAAAGTTGAATTCAATAAATGGCTACCCACAATaGCAGTCCCACCCAAGTCACAGGCAGAGGAGATATTACACCCGT | + |
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Preference number: 1 (lower is better) Translates to: SFLGKKLNSINGYPQ*QSHPSHRQRRYYTR Trigger: ACGGGTGTAATATCTCCTCTGCCTGTGACTTGGGTGGGACTGTCATTGTGGGTAGCCATTTATTGAATTCAACTTTTTGCCAAGGAAGCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| 3UTR TCA 90 bp | GCGCTGAAGGACTTGCGAAAGCCCTCATTACACGTCCTGCCATGCTaGAGAGCTCTTCCTGAGAAATTAAAAACTTTAACCCTGGTTATT | + |
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Preference number: 1 (lower is better) Translates to: ALKDLRKPSLHVLPC*RALPEKLKTLTLVI Trigger: AATAACCAGGGTTAAAGTTTTTAATTTCTCAGGAAGAGCTCTTCAGCATGGCAGGACGTGTAATGAGGGCTTTCGCAAGTCCTTCAGCGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| 3UTR TCA 90 bp | ACCCTTGCACATTCACAGAAGACAGCTTTCATTCCCCTAGGAGTCTaGGATGAAGAAACAAGTAGCTGGCTTCAAGACTGGTTTGAAGGT | + |
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Preference number: 1 (lower is better) Translates to: TLAHSQKTAFIPLGV*DEETSSWLQDWFEG Trigger: ACCTTCAAACCAGTCTTGAAGCCAGCTACTTGTTTCTTCATCTCAGACTCCTAGGGGAATGAAAGCTGTCTTCTGTGAATGTGCAAGGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| 3UTR TCA 90 bp | GCGAAAGCCCTCATTACACGTCCTGCCATGCTGAAGAGCTCTTCCTaGGAAATTAAAAACTTTAACCCTGGTTATTTCCAAAGAACACCT | + |
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Preference number: 1 (lower is better) Translates to: AKALITRPAMLKSSS*EIKNFNPGYFQRTP Trigger: AGGTGTTCTTTGGAAATAACCAGGGTTAAAGTTTTTAATTTCTCAGGAAGAGCTCTTCAGCATGGCAGGACGTGTAATGAGGGCTTTCGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| 3UTR TCA 90 bp | AAACTTCACAAGCTGGTCCCATTAGATAAGCCAGGAGTTTTCAAATaGCACGAGCCAAACCCTTGCACATTCACAGAAGACAGCTTTCAT | + |
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Preference number: 1 (lower is better) Translates to: KLHKLVPLDKPGVFK*HEPNPCTFTEDSFH Trigger: ATGAAAGCTGTCTTCTGTGAATGTGCAAGGGTTTGGCTCGTGTCATTTGAAAACTCCTGGCTTATCTAATGGGACCAGCTTGTGAAGTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| 3UTR-3UTR TCA 90 bp | GACGGACTCCTATGCCATCTGCAGGAGGGAGGCCAGCATGGGTTGCAAAACGCCAAACTGCATTTCCCTTaGGATAAGCTTCCTTGGCAA | + |
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Preference number: 2 (lower is better) Translates to: DGLLCHLQEGGQHGLQNAKLHFP*DKLPWQ Trigger: TTGCCAAGGAAGCTTATCTCAAGGGAAATGCAGTTT...GGCGTTTTGCAACCCATGCTGGCCTCCCTCCTGCAGATGGCATAGGAGTCCGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| 3UTR-3UTR GCA 90 bp | GAACAACAGCAGAGGAGACAGTCCAAAGACAGACGGACTCCTATGCCATCTGCAACAAGAGACAAGTCCTaGTCTCTTCCCTCCCGAGCC | + |
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Preference number: 2 (lower is better) Translates to: EQQQRRQSKDRRTPMPSATRDKS*SLPSRA Trigger: GGCTCGGGAGGGAAGAGAGCAGGACTTGTCTCTTGT...TGCAGATGGCATAGGAGTCCGTCTGTCTTTGGACTGTCTCCTCTGCTGTTGTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| 3UTR-3UTR GCA 90 bp | CAAGTGGTTACCAACTGCATCAAAGCCACTCGGGCCTTTCACAGAGGCAGTCCTCACGAGCCAAACCCTTaGACATTCACAGAAGACAGC | + |
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Preference number: 2 (lower is better) Translates to: QVVTNCIKATRAFHRGSPHEPNP*TFTEDS Trigger: GCTGTCTTCTGTGAATGTGCAAGGGTTTGGCTCGTG...AGGACTGCCTCTGTGAAAGGCCCGAGTGGCTTTGATGCAGTTGGTAACCACTTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| 3UTR-3UTR CCA 90 bp | CAAGTGGTTACCAACTGCATCAAAGCCACTCGGGCCTTTCACAGAGGCAGTCCTGCCACACTCACTGGATaGATAGCTTACTGCTCTGCA | + |
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Preference number: 2 (lower is better) Translates to: QVVTNCIKATRAFHRGSPATLTG*IAYCSA Trigger: TGCAGAGCAGTAAGCTATCCATCCAGTGAGTGTGGC...AGGACTGCCTCTGTGAAAGGCCCGAGTGGCTTTGATGCAGTTGGTAACCACTTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| 3UTR-3UTR TCA 90 bp | AGTTTCTTTGCTTGTTCCATTCCTTCACAAGAGACAAGTCCTGCTCTCTTCCCTAATGGCTACCCACAATaGCAGTCCCACCCAAGTCAC | + |
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Preference number: 2 (lower is better) Translates to: SFFACSIPSQETSPALFPNGYPQ*QSHPSH Trigger: GTGACTTGGGTGGGACTGTCATTGTGGGTAGCCATT...AGGGAAGAGAGCAGGACTTGTCTCTTGTGAAGGAATGGAACAAGCAAAGAAACT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| 3UTR-3UTR GCA 90 bp | TCTCCCCTATACAAAGGGAGAAGCAAGCCAGAAACTGAAAACTCAACTGAGGAGAGGGTAAAGATTTCCTaGTGGCAGGAGGCCATCTTC | + |
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Preference number: 2 (lower is better) Translates to: SPLYKGRSKPETENSTEERVKIS*WQEAIF Trigger: GAAGATGGCCTCCTGCCAGCAGGAAATCTTTACCCT...CTCCTCAGTTGAGTTTTCAGTTTCTGGCTTGCTTCTCCCTTTGTATAGGGGAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| 3UTR-3UTR GCA 90 bp | CAAGTGGTTACCAACTGCATCAAAGCCACTCGGGCCTTTCACAGAGGCAGTCCTCAACACAAGTTTCTTTaGTTGTTCCATTCCTTCACA | + |
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Preference number: 2 (lower is better) Translates to: QVVTNCIKATRAFHRGSPQHKFL*LFHSFT Trigger: TGTGAAGGAATGGAACAAGCAAAGAAACTTGTGTTG...AGGACTGCCTCTGTGAAAGGCCCGAGTGGCTTTGATGCAGTTGGTAACCACTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| 3UTR-3UTR CCA 90 bp | CAAGTGGTTACCAACTGCATCAAAGCCACTCGGGCCTTTCACAGAGGCAGTCCTGTTGAATTCAATAAATaGCTACCCACAATGACAGTC | + |
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Preference number: 2 (lower is better) Translates to: QVVTNCIKATRAFHRGSPVEFNK*LPTMTV Trigger: GACTGTCATTGTGGGTAGCCATTTATTGAATTCAAC...AGGACTGCCTCTGTGAAAGGCCCGAGTGGCTTTGATGCAGTTGGTAACCACTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| 3UTR-3UTR TCA 90 bp | AGGAGGGAGGCCAGCATGGGTTGCAAAACGCCAAGAAGCTACGTTTCTAAAAAGATCACTGAAGTTAACTaGGGTGTAAACATTCCTGAC | + |
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Preference number: 2 (lower is better) Translates to: RREASMGCKTPRSYVSKKITEVN*GVNIPD Trigger: GTCAGGAATGTTTACACCTCAGTTAACTTCAGTGAT...CTTTTTAGAAACGTAGCTTCTTGGCGTTTTGCAACCCATGCTGGCCTCCCTCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| 3UTR-3UTR TCA 90 bp | CAACTGGGTGTGTGTAAGCACCACAAGGATGAAGGTGATTTCTGTACAAACATGTTCAACAATGTGACATaGCCTAAGTCATCGGAACAC | + |
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Preference number: 2 (lower is better) Translates to: QLGVCKHHKDEGDFCTNMFNNVT*PKSSEH Trigger: GTGTTCCGATGACTTAGGTCATGTCACATTGTTGAA...CATGTTTGTACAGAAATCACCTTCATCCTTGTGGTGCTTACACACACCCAGTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| 3UTR GCA 72 bp | CAAAGGCGGCTCCAGGGCCAGAGTGGTTTGGCCTGCTaGCTAATAGTCTCCCTCGGCTCTAAGGCCTGCCTT | + |
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Preference number: 3 (lower is better) Translates to: QRRLQGQSGLAC*LIVSLGSKACL Trigger: AAGGCAGGCCTTAGAGCCGAGGGAGACTATTAGGCAGCAGGCCAAACCACTCTGGCCCTGGAGCCGCCTTTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| 3UTR TCA 72 bp | TCCTGCTCTCTTCCCTCCCGAGCCCCACGTGTACAGTaGCCACTACAAGTAGCTCAGCACATGACTCAGCAA | + |
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Preference number: 3 (lower is better) Translates to: SCSLPSRAPRVQ*PLQVAQHMTQQ Trigger: TTGCTGAGTCATGTGCTGAGCTACTTGTAGTGGTCACTGTACACGTGGGGCTCGGGAGGGAAGAGAGCAGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| 3UTR CCA 72 bp | CATCAAAGCCACTCGGGCCTTTCACAGAGGCAGTCCTaGTGTTTTAGGCCCTTTGGAAAGCTGCCACTACCT | + |
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Preference number: 3 (lower is better) Translates to: HQSHSGLSQRQS*CFRPFGKLPLP Trigger: AGGTAGTGGCAGCTTTCCAAAGGGCCTAAAACACCAGGACTGCCTCTGTGAAAGGCCCGAGTGGCTTTGATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| 3UTR CCA 72 bp | CGGACTCCTATGCCATCTGCAGGAGGGAGGCCAGCATaGGTTGCAAAACGCCAAGAAGCTACGTTTCTAAAA | + |
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Preference number: 3 (lower is better) Translates to: RTPMPSAGGRPA*VAKRQEATFLK Trigger: TTTTAGAAACGTAGCTTCTTGGCGTTTTGCAACCCATGCTGGCCTCCCTCCTGCAGATGGCATAGGAGTCCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| 3UTR TCA 72 bp | TTTCAGGCCCCTATACTCTGCAGGCAGGCTCATTTCTaGACGCAGGAGCCTTCTCCGACTTGTCAAGTTAGA | + |
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Preference number: 3 (lower is better) Translates to: FQAPILCRQAHF*TQEPSPTCQVR Trigger: TCTAACTTGACAAGTCGGAGAAGGCTCCTGCGTTCAGAAATGAGCCTGCCTGCAGAGTATAGGGGCCTGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| 3UTR GCA 72 bp | TCCTATGCCATCTGCAGGAGGGAGGCCAGCATGGGTTaGAAAACGCCAAGAAGCTACGTTTCTAAAAAGTCA | + |
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Preference number: 3 (lower is better) Translates to: SYAICRREASMG*KTPRSYVSKKS Trigger: TGACTTTTTAGAAACGTAGCTTCTTGGCGTTTTGCAACCCATGCTGGCCTCCCTCCTGCAGATGGCATAGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| 3UTR-3UTR CAA 90 bp | GAACAACAGCAGAGGAGACAGTCCAAAGACAGACGGACTCCTATGCCATCTGCATTTCCAAAGAACACCTaGAGACTGGTTCGGGTACTA | + |
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Preference number: 3 (lower is better) Translates to: EQQQRRQSKDRRTPMPSAFPKNT*RLVRVL Trigger: TAGTACCCGAACCAGTCTCAAGGTGTTCTTTGGAAA...TGCAGATGGCATAGGAGTCCGTCTGTCTTTGGACTGTCTCCTCTGCTGTTGTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| 3UTR TCA 72 bp | AAGGGCTACTACTTGGGTGATCCAGCTACACCAACCTaGCACCAACACAAGTTTCTTTGCTTGTTCCATTCC | + |
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Preference number: 3 (lower is better) Translates to: KGYYLGDPATPT*HQHKFLCLFHS Trigger: GGAATGGAACAAGCAAAGAAACTTGTGTTGGTGTCAGGTTGGTGTAGCTGGATCACCCAAGTAGTAGCCCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| 3UTR TCA 72 bp | CATTCACAGAAGACAGCTTTCATTCCCCTAGGAGTCTaGGATGAAGAAACAAGTAGCTGGCTTCAAGACTGG | + |
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Preference number: 3 (lower is better) Translates to: HSQKTAFIPLGV*DEETSSWLQDW Trigger: CCAGTCTTGAAGCCAGCTACTTGTTTCTTCATCTCAGACTCCTAGGGGAATGAAAGCTGTCTTCTGTGAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| 3UTR-3UTR CAA 90 bp | CTCTGTTCTCCCCTATACAAAGGGAGAAGCAAGCCAGAAACTGAAAACTCAACTCCAACACAAGTTTCTTaGCTTGTTCCATTCCTTCAC | + |
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Preference number: 3 (lower is better) Translates to: LCSPLYKGRSKPETENSTPTQVS*LVPFLH Trigger: GTGAAGGAATGGAACAAGCAAAGAAACTTGTGTTGG...AGTTGAGTTTTCAGTTTCTGGCTTGCTTCTCCCTTTGTATAGGGGAGAACAGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| 3UTR-3UTR CAA 90 bp | CAACTGGGTGTGTGTAAGCACCACAAGGATGAAGGTGATTTCTGTACAAACATGCACAAGTTTCTTTGCTaGTTCCATTCCTTCACAAGA | + |
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Preference number: 3 (lower is better) Translates to: QLGVCKHHKDEGDFCTNMHKFLC*FHSFTR Trigger: TCTTGTGAAGGAATGGAACAAGCAAAGAAACTTGTG...CATGTTTGTACAGAAATCACCTTCATCCTTGTGGTGCTTACACACACCCAGTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| CDS-3UTR GCA 90 bp | TTTAGGCCCTTTGGAAAGCTGCCACTACCTTCCTACCCTAACACTGGGCTAACTGCAGGAAGTCCGCGCTaGCGCTCAGAGGGAGGCCGC | + |
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Preference number: 4 (lower is better) Translates to: FRPFGKLPLPSYPNTGLTAGSPR*RSEGGR Trigger: GCGGCCTCCCTCTGAGCGGCAGCGCGGACTTCCTGC...AGTTAGCCCAGTGTTAGGGTAGGAAGGTAGTGGCAGCTTTCCAAAGGGCCTAAA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| CDS-3UTR TCA 90 bp | AGTTTCTTTGCTTGTTCCATTCCTTCACAAGAGACAAGTCCTGCTCTCTTCCCTTCAGAGGGAGGCCGCTaGAGGGCCGGCCGAGGGCTG | + |
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Preference number: 4 (lower is better) Translates to: SFFACSIPSQETSPALFPSEGGR*RAGRGL Trigger: CAGCCCTCGGCCGGCCCTTCAGCGGCCTCCCTCTGA...AGGGAAGAGAGCAGGACTTGTCTCTTGTGAAGGAATGGAACAAGCAAAGAAACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| CDS-3UTR TCA 90 bp | GACGGACTCCTATGCCATCTGCAGGAGGGAGGCCAGCATGGGTTGCAAAACGCCGTTCTTAGGGCTAGATaGTGGCTTTGGCTTCTCAGG | + |
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Preference number: 4 (lower is better) Translates to: DGLLCHLQEGGQHGLQNAVLRAR*WLWLLR Trigger: CCTGAGAAGCCAAAGCCATCATCTAGCCCTAAGAAC...GGCGTTTTGCAACCCATGCTGGCCTCCCTCCTGCAGATGGCATAGGAGTCCGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| CDS-3UTR GCA 90 bp | CTGCTCTCTTCCCTCCCGAGCCCCACGTGTACAGTGACCACTACAAGTAGCTCACTCTGTGCTAGTAGCTaGCTCCAGACTACGGTAAAG | + |
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Preference number: 4 (lower is better) Translates to: LLSSLPSPTCTVTTTSSSLCASS*LQTTVK Trigger: CTTTACCGTAGTCTGGAGGCAGCTACTAGCACAGAG...TGAGCTACTTGTAGTGGTCACTGTACACGTGGGGCTCGGGAGGGAAGAGAGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| CDS-3UTR CCA 90 bp | GACGGACTCCTATGCCATCTGCAGGAGGGAGGCCAGCATGGGTTGCAAAACGCCTCGTTTCTTTCTTACTaGACACTCATCATCCTCCGC | + |
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Preference number: 4 (lower is better) Translates to: DGLLCHLQEGGQHGLQNASFLSY*TLIILR Trigger: GCGGAGGATGATGAGTGTCCAGTAAGAAAGAAACGA...GGCGTTTTGCAACCCATGCTGGCCTCCCTCCTGCAGATGGCATAGGAGTCCGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| CDS-3UTR CCA 90 bp | CTGCTAACTTTTAGGCTTACTGCACAAAAGCTTAAGCACCTGACAATTAGCTATGCCCGCGAAGGCCGGTaGCGGCTGCAGGAAGTCCGC | + |
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Preference number: 4 (lower is better) Translates to: LLTFRLTAQKLKHLTISYAREGR*RLQEVR Trigger: GCGGACTTCCTGCAGCCGCCACCGGCCTTCGCGGGC...ATAGCTAATTGTCAGGTGCTTAAGCTTTTGTGCAGTAAGCCTAAAAGTTAGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| 3UTR CAA 72 bp | GCCTTTCACAGAGGCAGTCCTGGTGTTTTAGGCCCTTaGGAAAGCTGCCACTACCTTCCTACCCTAACACTG | + |
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Preference number: 4 (lower is better) Translates to: AFHRGSPGVLGP*ESCHYLPTLTL Trigger: CAGTGTTAGGGTAGGAAGGTAGTGGCAGCTTTCCAAAGGGCCTAAAACACCAGGACTGCCTCTGTGAAAGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| CDS-3UTR TCA 90 bp | CAAGTGGTTACCAACTGCATCAAAGCCACTCGGGCCTTTCACAGAGGCAGTCCTGGTTCTCCAGTTGTCTaGTCCATTTCCTCACAGACC | + |
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Preference number: 4 (lower is better) Translates to: QVVTNCIKATRAFHRGSPGSPVV*SISSQT Trigger: GGTCTGTGAGGAAATGGATCAGACAACTGGAGAACC...AGGACTGCCTCTGTGAAAGGCCCGAGTGGCTTTGATGCAGTTGGTAACCACTTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| CDS-3UTR GCA 90 bp | CTCTGTTCTCCCCTATACAAAGGGAGAAGCAAGCCAGAAACTGAAAACTCAACTCGCAGTGCCCGGAGCTaGGTGCTTTGCTTGGCTCTC | + |
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Preference number: 4 (lower is better) Translates to: LCSPLYKGRSKPETENSTRSARS*VLCLAL Trigger: GAGAGCCAAGCAAAGCACGCAGCTCCGGGCACTGCG...AGTTGAGTTTTCAGTTTCTGGCTTGCTTCTCCCTTTGTATAGGGGAGAACAGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| CDS-3UTR GCA 90 bp | TCTCCCCTATACAAAGGGAGAAGCAAGCCAGAAACTGAAAACTCAACTGAGGAGCTGTCCTCAATCTCTTaGAGCCGCCTTCGGGCGACT | + |
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Preference number: 4 (lower is better) Translates to: SPLYKGRSKPETENSTEELSSIS*SRLRAT Trigger: AGTCGCCCGAAGGCGGCTGCAAGAGATTGAGGACAG...CTCCTCAGTTGAGTTTTCAGTTTCTGGCTTGCTTCTCCCTTTGTATAGGGGAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| CDS-3UTR GCA 90 bp | AGTTTCTTTGCTTGTTCCATTCCTTCACAAGAGACAAGTCCTGCTCTCTTCCCTCGGAGCTGCGTGCTTTaGTTGGCTCTCTCTCCTGTA | + |
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Preference number: 4 (lower is better) Translates to: SFFACSIPSQETSPALFPRSCVL*LALSPV Trigger: TACAGGAGAGAGAGCCAAGCAAAGCACGCAGCTCCG...AGGGAAGAGAGCAGGACTTGTCTCTTGTGAAGGAATGGAACAAGCAAAGAAACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| CDS-3UTR CCA 90 bp | GAACAACAGCAGAGGAGACAGTCCAAAGACAGACGGACTCCTATGCCATCTGCAACAAGACTTGGGAGGTaGCTAACATTTCTGTCACTT | + |
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Preference number: 4 (lower is better) Translates to: EQQQRRQSKDRRTPMPSATRLGR*LTFLSL Trigger: AAGTGACAGAAATGTTAGCCACCTCCCAAGTCTTGT...TGCAGATGGCATAGGAGTCCGTCTGTCTTTGGACTGTCTCCTCTGCTGTTGTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| CDS-3UTR CCA 90 bp | GAACAACAGCAGAGGAGACAGTCCAAAGACAGACGGACTCCTATGCCATCTGCATCAAACCCGTTTTCATaGTGTCAGAAAGGACAAGAC | + |
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Preference number: 4 (lower is better) Translates to: EQQQRRQSKDRRTPMPSASNPFS*CQKGQD Trigger: GTCTTGTCCTTTCTGACACCATGAAAACGGGTTTGA...TGCAGATGGCATAGGAGTCCGTCTGTCTTTGGACTGTCTCCTCTGCTGTTGTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| CDS-3UTR CCA 90 bp | AGTTTCTTTGCTTGTTCCATTCCTTCACAAGAGACAAGTCCTGCTCTCTTCCCTTCTTTCTACAGTGAATaGAAACACGTCCGCGCGCTG | + |
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Preference number: 4 (lower is better) Translates to: SFFACSIPSQETSPALFPSFYSE*KHVRAL Trigger: CAGCGCGCGGACGTGTTTCCATTCACTGTAGAAAGA...AGGGAAGAGAGCAGGACTTGTCTCTTGTGAAGGAATGGAACAAGCAAAGAAACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| 3UTR CAA 72 bp | TCCAGCTACACCAACCTGACACCAACACAAGTTTCTTaGCTTGTTCCATTCCTTCACAAGAGACAAGTCCTG | + |
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Preference number: 4 (lower is better) Translates to: SSYTNLTPTQVS*LVPFLHKRQVL Trigger: CAGGACTTGTCTCTTGTGAAGGAATGGAACAAGCAAAGAAACTTGTGTTGGTGTCAGGTTGGTGTAGCTGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| CDS-3UTR CCA 90 bp | CTGCTAACTTTTAGGCTTACTGCACAAAAGCTTAAGCACCTGACAATTAGCTATGGCGACTTCACACTGTaGTTCTCCAGTTGTCTGATC | + |
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Preference number: 4 (lower is better) Translates to: LLTFRLTAQKLKHLTISYGDFTL*FSSCLI Trigger: GATCAGACAACTGGAGAACCACAGTGTGAAGTCGCC...ATAGCTAATTGTCAGGTGCTTAAGCTTTTGTGCAGTAAGCCTAAAAGTTAGCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| CDS GCA 90 bp | GCGGCTCCTGGCGGGAAGGCCCGGCCCGCGAAGGCCGGTGGCGGCTaGAGGAAGTCCGCGCTGCCGCTCAGAGGGAGGCCGCTGAAGGGC | + |
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Preference number: 5 (lower is better) Translates to: AAPGGKARPAKAGGG*RKSALPLRGRPLKG Trigger: GCCCTTCAGCGGCCTCCCTCTGAGCGGCAGCGCGGACTTCCTGCAGCCGCCACCGGCCTTCGCGGGCCGGGCCTTCCCGCCAGGAGCCGC 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| CDS GCA 90 bp | TACAGTGAATGGAAACACGTCCGCGCGCTGTTCTCCCGCCCGGGCTaGTCGGCGCGCCGCGGACACCGGGCCGCGGGGCCAGGTCATGGC | + |
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Preference number: 5 (lower is better) Translates to: YSEWKHVRALFSRPG*SARRGHRAAGPGHG Trigger: GCCATGACCTGGCCCCGCGGCCCGGTGTCCGCGGCGCGCCGAGCAGCCCGGGCGGGAGAACAGCGCGCGGACGTGTTTCCATTCACTGTA 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| CDS CCA 90 bp | CGGCGCGTCTGCGCACTGAGGTTCCAGCAACCCTTCAGTCCTCTGTaGGAACGCAGTGCCCGGAGCTGCGTGCTTTGCTTGGCTCTCTCT | + |
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Preference number: 5 (lower is better) Translates to: RRVCALRFQQPFSPL*ERSARSCVLCLALS Trigger: AGAGAGAGCCAAGCAAAGCACGCAGCTCCGGGCACTGCGTTCCCACAGAGGACTGAAGGGTTGCTGGAACCTCAGTGCGCAGACGCGCCG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| CDS GCA 90 bp | CTCTGTGCTAGTAGCTGCCTCCAGACTACGGTAAAGCGGCGCGTCTaGGCACTGAGGTTCCAGCAACCCTTCAGTCCTCTGTGGGAACGC | + |
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Preference number: 5 (lower is better) Translates to: LCASSCLQTTVKRRV*ALRFQQPFSPLWER Trigger: GCGTTCCCACAGAGGACTGAAGGGTTGCTGGAACCTCAGTGCGCAGACGCGCCGCTTTACCGTAGTCTGGAGGCAGCTACTAGCACAGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| CDS CCA 90 bp | ACTCATCATCCTCCGCCAACCGCTTGTGTTTCTTTCTACAGTGAATaGAAACACGTCCGCGCGCTGTTCTCCCGCCCGGGCTGCTCGGCG | + |
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Preference number: 5 (lower is better) Translates to: THHPPPTACVSFYSE*KHVRALFSRPGCSA Trigger: CGCCGAGCAGCCCGGGCGGGAGAACAGCGCGCGGACGTGTTTCCATTCACTGTAGAAAGAAACACAAGCGGTTGGCGGAGGATGATGAGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| CDS-3UTR CAA 90 bp | CTGCTCTCTTCCCTCCCGAGCCCCACGTGTACAGTGACCACTACAAGTAGCTCACCTGTCCTCAATCTCTaGCAGCCGCCTTCGGGCGAC | + |
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Preference number: 5 (lower is better) Translates to: LLSSLPSPTCTVTTTSSSPVLNL*QPPSGD Trigger: GTCGCCCGAAGGCGGCTGCAAGAGATTGAGGACAGG...TGAGCTACTTGTAGTGGTCACTGTACACGTGGGGCTCGGGAGGGAAGAGAGCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| CDS TCA 90 bp | GGACACTCATCATCCTCCGCCAACCGCTTGTGTTTCTTTCTACAGTaGATGGAAACACGTCCGCGCGCTGTTCTCCCGCCCGGGCTGCTC | + |
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Preference number: 5 (lower is better) Translates to: GHSSSSANRLCFFLQ*METRPRAVLPPGLL Trigger: GAGCAGCCCGGGCGGGAGAACAGCGCGCGGACGTGTTTCCATTCACTGTAGAAAGAAACACAAGCGGTTGGCGGAGGATGATGAGTGTCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| CDS GCA 90 bp | CGCACTGAGGTTCCAGCAACCCTTCAGTCCTCTGTGGGAACGCAGTaGCCGGAGCTGCGTGCTTTGCTTGGCTCTCTCTCCTGTAGTTCT | + |
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Preference number: 5 (lower is better) Translates to: RTEVPATLQSSVGTQ*PELRALLGSLSCSS Trigger: AGAACTACAGGAGAGAGAGCCAAGCAAAGCACGCAGCTCCGGGCACTGCGTTCCCACAGAGGACTGAAGGGTTGCTGGAACCTCAGTGCG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| CDS GCA 90 bp | TTCCAGCAACCCTTCAGTCCTCTGTGGGAACGCAGTGCCCGGAGCTaGGTGCTTTGCTTGGCTCTCTCTCCTGTAGTTCTTAGGGCTAGA | + |
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Preference number: 5 (lower is better) Translates to: FQQPFSPLWERSARS*VLCLALSPVVLRAR Trigger: TCTAGCCCTAAGAACTACAGGAGAGAGAGCCAAGCAAAGCACGCAGCTCCGGGCACTGCGTTCCCACAGAGGACTGAAGGGTTGCTGGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| CDS-3UTR CAA 90 bp | CATGTCCTTAGGATTCATGAAAAGACATTTCTCTCACAGGCAATATACCTCCCACCGGAGCTGCGTGCTTaGCTTGGCTCTCTCTCCTGT | + |
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Preference number: 5 (lower is better) Translates to: HVLRIHEKTFLSQAIYLPPELRA*LGSLSC Trigger: ACAGGAGAGAGAGCCAAGCAAAGCACGCAGCTCCGG...TGGGAGGTATATTGCCTGTGAGAGAAATGTCTTTTCATGAATCCTAAGGACATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| CDS GCA 72 bp | GGCGGGAAGGCCCGGCCCGCGAAGGCCGGTGGCGGCTaGAGGAAGTCCGCGCTGCCGCTCAGAGGGAGGCCG | + |
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Preference number: 6 (lower is better) Translates to: GGKARPAKAGGG*RKSALPLRGRP Trigger: CGGCCTCCCTCTGAGCGGCAGCGCGGACTTCCTGCAGCCGCCACCGGCCTTCGCGGGCCGGGCCTTCCCGCC 79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| CDS GCA 72 bp | CCTCTGTGGGAACGCAGTGCCCGGAGCTGCGTGCTTTaGTTGGCTCTCTCTCCTGTAGTTCTTAGGGCTAGA | + |
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Preference number: 6 (lower is better) Translates to: PLWERSARSCVL*LALSPVVLRAR Trigger: TCTAGCCCTAAGAACTACAGGAGAGAGAGCCAAGCAAAGCACGCAGCTCCGGGCACTGCGTTCCCACAGAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| CDS TCA 72 bp | TCATCCTCCGCCAACCGCTTGTGTTTCTTTCTACAGTaGATGGAAACACGTCCGCGCGCTGTTCTCCCGCCC | + |
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Preference number: 6 (lower is better) Translates to: SSSANRLCFFLQ*METRPRAVLPP Trigger: GGGCGGGAGAACAGCGCGCGGACGTGTTTCCATTCACTGTAGAAAGAAACACAAGCGGTTGGCGGAGGATGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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| CDS CCA 72 bp | AATCTCTTGCAGCCGCCTTCGGGCGACTTCACACTGTaGTTCTCCAGTTGTCTGATCCATTTCCTCACAGAC | + |
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Preference number: 6 (lower is better) Translates to: NLLQPPSGDFTL*FSSCLIHFLTD Trigger: GTCTGTGAGGAAATGGATCAGACAACTGGAGAACCACAGTGTGAAGTCGCCCGAAGGCGGCTGCAAGAGATT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020776.5 |
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