RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CCDC115 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042111

Ensembl transcript IDs: ENSMUST00000042493.10

Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TCCCAGATGGCTGCCGCAGGTTATTCACACGTCACTGTCATGCCCTaGGACCATGGCCTAGAACTAGGTGCTCTCTACACTGCTCAGCTT +
Preference number: 1 (lower is better)
Translates to: SQMAAAGYSHVTVMP*DHGLELGALYTAQL
Trigger: AAGCTGAGCAGTGTAGAGAGCACCTAGTTCTAGGCCATGGTCTCAGGGCATGACAGTGACGTGTGAATAACCTGCGGCAGCCATCTGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
3UTR GCA 90 bp TCTTCTCTGTCACCATTTCTGCAGGGCTTCACTATCCCAGATGGCTaGCGCAGGTTATTCACACGTCACTGTCATGCCCTGAGACCATGG +
Preference number: 1 (lower is better)
Translates to: SSLSPFLQGFTIPDG*RRLFTRHCHALRPW
Trigger: CCATGGTCTCAGGGCATGACAGTGACGTGTGAATAACCTGCGGCAGCCATCTGGGATAGTGAAGCCCTGCAGAAATGGTGACAGAGAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
3UTR CCA 90 bp GGCTGCCGCAGGTTATTCACACGTCACTGTCATGCCCTGAGACCATaGCCTAGAACTAGGTGCTCTCTACACTGCTCAGCTTTGCTTCAT +
Preference number: 1 (lower is better)
Translates to: GCRRLFTRHCHALRP*PRTRCSLHCSALLH
Trigger: ATGAAGCAAAGCTGAGCAGTGTAGAGAGCACCTAGTTCTAGGCCATGGTCTCAGGGCATGACAGTGACGTGTGAATAACCTGCGGCAGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
3UTR CCA 90 bp CCTTTCTTCTCTGTCACCATTTCTGCAGGGCTTCACTATCCCAGATaGCTGCCGCAGGTTATTCACACGTCACTGTCATGCCCTGAGACC +
Preference number: 1 (lower is better)
Translates to: PFFSVTISAGLHYPR*LPQVIHTSLSCPET
Trigger: GGTCTCAGGGCATGACAGTGACGTGTGAATAACCTGCGGCAGCCATCTGGGATAGTGAAGCCCTGCAGAAATGGTGACAGAGAAGAAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
3UTR GCA 90 bp TACACTGCTCAGCTTTGCTTCATCAAACTTCATAACTCAACTTCATaGCTCGAAAAGCTAGAAACCGCGCAGACTAAGGACATTTCTAGG +
Preference number: 1 (lower is better)
Translates to: YTAQLCFIKLHNSTS*LEKLETAQTKDISR
Trigger: CCTAGAAATGTCCTTAGTCTGCGCGGTTTCTAGCTTTTCGAGGCATGAAGTTGAGTTATGAAGTTTGATGAAGCAAAGCTGAGCAGTGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
3UTR-3UTR GCA 90 bp ACCTTCAGCAAAGCAGCTGGGTCTCACTTCTATAAGCTAAGTGCAATCAGGAAGGCTACAGGCACGCGCTaGCACGCCCAGCCTGAGGTA +
Preference number: 2 (lower is better)
Translates to: TFSKAAGSHFYKLSAIRKATGTR*HAQPEV
Trigger: TACCTCAGGCTGGGCGTGGCAGCGCGTGCCTGTAGC...CTTCCTGATTGCACTTAGCTTATAGAAGTGAGACCCAGCTGCTTTGCTGAAGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
3UTR-3UTR TCA 90 bp ATGTTTCTAGACTCCCTTTCTTCTCTGTCACCATTTCTGCAGGGCTTCACTATCGTCACTGTCATGCCCTaGGACCATGGCCTAGAACTA +
Preference number: 2 (lower is better)
Translates to: MFLDSLSSLSPFLQGFTIVTVMP*DHGLEL
Trigger: TAGTTCTAGGCCATGGTCTCAGGGCATGACAGTGAC...GATAGTGAAGCCCTGCAGAAATGGTGACAGAGAAGAAAGGGAGTCTAGAAACAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
3UTR-3UTR TCA 90 bp CTACCTTATGTTTCTAGACTCCCTTTCTTCTCTGTCACCATTTCTGCAGGGCTTAAAAAGAAGAAGGCCTaGGGTAAGGTGGTAGCATCC +
Preference number: 2 (lower is better)
Translates to: LPYVSRLPFFSVTISAGLKKKKA*GKVVAS
Trigger: GGATGCTACCACCTTACCTCAGGCCTTCTTCTTTTT...AAGCCCTGCAGAAATGGTGACAGAGAAGAAAGGGAGTCTAGAAACATAAGGTAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
3UTR-3UTR GCA 90 bp ATTTACACCCCACAAACAATTACATTCCCCTTCCCAACACAACTGGATAGCTCACATAACTCAACTTCATaGCTCGAAAAGCTAGAAACC +
Preference number: 2 (lower is better)
Translates to: IYTPQTITFPFPTQLDSSHNSTS*LEKLET
Trigger: GGTTTCTAGCTTTTCGAGGCATGAAGTTGAGTTATG...TGAGCTATCCAGTTGTGTTGGGAAGGGGAATGTAATTGTTTGTGGGGTGTAAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
3UTR-3UTR GCA 90 bp TATGTTTCTAGACTCCCTTTCTTCTCTGTCACCATTTCTGCAGGGCTTCACTATTACACTGCTCAGCTTTaGTTCATCAAACTTCATAAC +
Preference number: 2 (lower is better)
Translates to: YVSRLPFFSVTISAGLHYYTAQL*FIKLHN
Trigger: GTTATGAAGTTTGATGAAGCAAAGCTGAGCAGTGTA...ATAGTGAAGCCCTGCAGAAATGGTGACAGAGAAGAAAGGGAGTCTAGAAACATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
3UTR GCA 72 bp TCAGCCTCTAGAGTTGCTGGAGCTACAGGCACGCGCTaGCACGCCCAGCCTGAGGTACTTTTATTGACTGGA +
Preference number: 3 (lower is better)
Translates to: SASRVAGATGTR*HAQPEVLLLTG
Trigger: TCCAGTCAATAAAAGTACCTCAGGCTGGGCGTGGCAGCGCGTGCCTGTAGCTCCAGCAACTCTAGAGGCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
3UTR TCA 72 bp GCTGCCGCAGGTTATTCACACGTCACTGTCATGCCCTaGGACCATGGCCTAGAACTAGGTGCTCTCTACACT +
Preference number: 3 (lower is better)
Translates to: AAAGYSHVTVMP*DHGLELGALYT
Trigger: AGTGTAGAGAGCACCTAGTTCTAGGCCATGGTCTCAGGGCATGACAGTGACGTGTGAATAACCTGCGGCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
3UTR GCA 72 bp TCACCATTTCTGCAGGGCTTCACTATCCCAGATGGCTaGCGCAGGTTATTCACACGTCACTGTCATGCCCTG +
Preference number: 3 (lower is better)
Translates to: SPFLQGFTIPDG*RRLFTRHCHAL
Trigger: CAGGGCATGACAGTGACGTGTGAATAACCTGCGGCAGCCATCTGGGATAGTGAAGCCCTGCAGAAATGGTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
3UTR TCA 72 bp GCTGAGACAGGGGCTGCTTATAAAAAGAAGAAGGCCTaGGGTAAGGTGGTAGCATCCACGGCAGCTATGCTC +
Preference number: 3 (lower is better)
Translates to: AETGAAYKKKKA*GKVVASTAAML
Trigger: GAGCATAGCTGCCGTGGATGCTACCACCTTACCTCAGGCCTTCTTCTTTTTATAAGCAGCCCCTGTCTCAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
3UTR CCA 72 bp TCTGTCACCATTTCTGCAGGGCTTCACTATCCCAGATaGCTGCCGCAGGTTATTCACACGTCACTGTCATGC +
Preference number: 3 (lower is better)
Translates to: SVTISAGLHYPR*LPQVIHTSLSC
Trigger: GCATGACAGTGACGTGTGAATAACCTGCGGCAGCCATCTGGGATAGTGAAGCCCTGCAGAAATGGTGACAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
3UTR GCA 72 bp CACTGTCATGCCCTGAGACCATGGCCTAGAACTAGGTaGTCTCTACACTGCTCAGCTTTGCTTCATCAAACT +
Preference number: 3 (lower is better)
Translates to: HCHALRPWPRTR*SLHCSALLHQT
Trigger: AGTTTGATGAAGCAAAGCTGAGCAGTGTAGAGAGCACCTAGTTCTAGGCCATGGTCTCAGGGCATGACAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
3UTR GCA 72 bp GGCCTAGAACTAGGTGCTCTCTACACTGCTCAGCTTTaGTTCATCAAACTTCATAACTCAACTTCATGCCTC +
Preference number: 3 (lower is better)
Translates to: GLELGALYTAQL*FIKLHNSTSCL
Trigger: GAGGCATGAAGTTGAGTTATGAAGTTTGATGAAGCAAAGCTGAGCAGTGTAGAGAGCACCTAGTTCTAGGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
3UTR-3UTR CAA 90 bp TTCAGCAAAGCAGCTGGGTCTCACTTCTATAAGCTAAGTGCAATCAGGAAGGTCCCTGAGGTACTTTTATaGACTGGAATTGTCCTGATC +
Preference number: 3 (lower is better)
Translates to: FSKAAGSHFYKLSAIRKVPEVLL*TGIVLI
Trigger: GATCAGGACAATTCCAGTCAATAAAAGTACCTCAGG...GACCTTCCTGATTGCACTTAGCTTATAGAAGTGAGACCCAGCTGCTTTGCTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
3UTR GCA 72 bp CAGCTTTGCTTCATCAAACTTCATAACTCAACTTCATaGCTCGAAAAGCTAGAAACCGCGCAGACTAAGGAC +
Preference number: 3 (lower is better)
Translates to: QLCFIKLHNSTS*LEKLETAQTKD
Trigger: GTCCTTAGTCTGCGCGGTTTCTAGCTTTTCGAGGCATGAAGTTGAGTTATGAAGTTTGATGAAGCAAAGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
CDS-3UTR CCA 90 bp CGTGAAGCAAGACACAGTTTCCAGGTGAGAGAATGCACCTTCAGCAAAGCAGCTAACCCTCCTCCACCCTaGCGTTCAGCGCCGCCCGCT +
Preference number: 4 (lower is better)
Translates to: REARHSFQVRECTFSKAANPPPP*RSAPPA
Trigger: AGCGGGCGGCGCTGAACGCCAGGGTGGAGGAGGGTT...AGCTGCTTTGCTGAAGGTGCATTCTCTCACCTGGAAACTGTGTCTTGCTTCACG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
CDS-3UTR CCA 90 bp TCTTCTCTGTCACCATTTCTGCAGGGCTTCACTATCCCAGATGGCTGCCGCAGGTGGCATAGCGAGCCTTaGCAAGTGAGAGCCAACCCT +
Preference number: 4 (lower is better)
Translates to: SSLSPFLQGFTIPDGCRRWHSEP*QVRANP
Trigger: AGGGTTGGCTCTCACTTGCCAAGGCTCGCTATGCCA...CCTGCGGCAGCCATCTGGGATAGTGAAGCCCTGCAGAAATGGTGACAGAGAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
CDS-3UTR CCA 90 bp TTCAGCAAAGCAGCTGGGTCTCACTTCTATAAGCTAAGTGCAATCAGGAAGGTCGGCCATCCCGGAAGCTaGCTTGGGCCTGCCGCAGAC +
Preference number: 4 (lower is better)
Translates to: FSKAAGSHFYKLSAIRKVGHPGS*LGPAAD
Trigger: GTCTGCGGCAGGCCCAAGCCAGCTTCCGGGATGGCC...GACCTTCCTGATTGCACTTAGCTTATAGAAGTGAGACCCAGCTGCTTTGCTGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
CDS-3UTR GCA 90 bp CGTGAAGCAAGACACAGTTTCCAGGTGAGAGAATGCACCTTCAGCAAAGCAGCTTCTTGGTGGGGCCCTTaGGCCTGCGCAGAGATGCTT +
Preference number: 4 (lower is better)
Translates to: REARHSFQVRECTFSKAASWWGP*ACAEML
Trigger: AAGCATCTCTGCGCAGGCGCAAGGGCCCCACCAAGA...AGCTGCTTTGCTGAAGGTGCATTCTCTCACCTGGAAACTGTGTCTTGCTTCACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
CDS-3UTR CCA 90 bp AAAGCAGCTGGGTCTCACTTCTATAAGCTAAGTGCAATCAGGAAGGTCACCCTGGGGGTCCTACCGACTTaGCTCCCATGGCATAGCGAG +
Preference number: 4 (lower is better)
Translates to: KAAGSHFYKLSAIRKVTLGVLPT*LPWHSE
Trigger: CTCGCTATGCCATGGGAGCCAAGTCGGTAGGACCCC...CAGGGTGACCTTCCTGATTGCACTTAGCTTATAGAAGTGAGACCCAGCTGCTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
CDS-3UTR CCA 90 bp ATGTTTCTAGACTCCCTTTCTTCTCTGTCACCATTTCTGCAGGGCTTCACTATCCATCCTGGGCCTCGCTaGCACGCACGCAGACCTGAG +
Preference number: 4 (lower is better)
Translates to: MFLDSLSSLSPFLQGFTIHPGPR*HARRPE
Trigger: CTCAGGTCTGCGTGCGTGCCAGCGAGGCCCAGGATG...GATAGTGAAGCCCTGCAGAAATGGTGACAGAGAAGAAAGGGAGTCTAGAAACAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
CDS-3UTR CCA 90 bp TTCTTCTCTGTCACCATTTCTGCAGGGCTTCACTATCCCAGATGGCTGCCGCAGCAGATCCTAACTCTTTaGTCTTGGTGGGGCCCTTGC +
Preference number: 4 (lower is better)
Translates to: FFSVTISAGLHYPRWLPQQILTL*SWWGPC
Trigger: GCAAGGGCCCCACCAAGACCAAAGAGTTAGGATCTG...CTGCGGCAGCCATCTGGGATAGTGAAGCCCTGCAGAAATGGTGACAGAGAAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
CDS-3UTR CCA 90 bp TTCTTCTCTGTCACCATTTCTGCAGGGCTTCACTATCCCAGATGGCTGCCGCAGTGCGAGTCTGGAGACTaGCTATATCTGCAGCCAGCT +
Preference number: 4 (lower is better)
Translates to: FFSVTISAGLHYPRWLPQCESGD*LYLQPA
Trigger: AGCTGGCTGCAGATATAGCCAGTCTCCAGACTCGCA...CTGCGGCAGCCATCTGGGATAGTGAAGCCCTGCAGAAATGGTGACAGAGAAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
CDS-3UTR CCA 90 bp CCTTATGTTTCTAGACTCCCTTTCTTCTCTGTCACCATTTCTGCAGGGCTTCACACTCTTTGGTCTTGGTaGGGCCCTTGCGCCTGCGCA +
Preference number: 4 (lower is better)
Translates to: PYVSRLPFFSVTISAGLHTLWSW*GPCACA
Trigger: TGCGCAGGCGCAAGGGCCCCACCAAGACCAAAGAGT...GTGAAGCCCTGCAGAAATGGTGACAGAGAAGAAAGGGAGTCTAGAAACATAAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
CDS-3UTR TCA 90 bp TATGTTTCTAGACTCCCTTTCTTCTCTGTCACCATTTCTGCAGGGCTTCACTATGCGAGCCTTGGCAAGTaGGAGCCAACCCTCCTCCAC +
Preference number: 4 (lower is better)
Translates to: YVSRLPFFSVTISAGLHYASLGK*EPTLLH
Trigger: GTGGAGGAGGGTTGGCTCTCACTTGCCAAGGCTCGC...ATAGTGAAGCCCTGCAGAAATGGTGACAGAGAAGAAAGGGAGTCTAGAAACATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
CDS-3UTR CCA 90 bp ACCTTCAGCAAAGCAGCTGGGTCTCACTTCTATAAGCTAAGTGCAATCAGGAAGCCGACTTGGCTCCCATaGCATAGCGAGCCTTGGCAA +
Preference number: 4 (lower is better)
Translates to: TFSKAAGSHFYKLSAIRKPTWLP*HSEPWQ
Trigger: TTGCCAAGGCTCGCTATGCCATGGGAGCCAAGTCGG...CTTCCTGATTGCACTTAGCTTATAGAAGTGAGACCCAGCTGCTTTGCTGAAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
CDS-3UTR CCA 90 bp CCTTATGTTTCTAGACTCCCTTTCTTCTCTGTCACCATTTCTGCAGGGCTTCACCTAACTCTTTGGTCTTaGTGGGGCCCTTGCGCCTGC +
Preference number: 4 (lower is better)
Translates to: PYVSRLPFFSVTISAGLHLTLWS*WGPCAC
Trigger: GCAGGCGCAAGGGCCCCACCAAGACCAAAGAGTTAG...GTGAAGCCCTGCAGAAATGGTGACAGAGAAGAAAGGGAGTCTAGAAACATAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
CDS-3UTR GCA 90 bp CCTTATGTTTCTAGACTCCCTTTCTTCTCTGTCACCATTTCTGCAGGGCTTCACATACGCGAGGCATACTaGAGGGGTCCTACCGACTTG +
Preference number: 4 (lower is better)
Translates to: PYVSRLPFFSVTISAGLHIREAY*RGPTDL
Trigger: CAAGTCGGTAGGACCCCTGCAGTATGCCTCGCGTAT...GTGAAGCCCTGCAGAAATGGTGACAGAGAAGAAAGGGAGTCTAGAAACATAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
CDS-3UTR TCA 90 bp CGTGAAGCAAGACACAGTTTCCAGGTGAGAGAATGCACCTTCAGCAAAGCAGCTCAGTTCAAGGGATCTTaGGGAACTACAGCAGATCCT +
Preference number: 4 (lower is better)
Translates to: REARHSFQVRECTFSKAAQFKGS*GTTADP
Trigger: AGGATCTGCTGTAGTTCCTCAAGATCCCTTGAACTG...AGCTGCTTTGCTGAAGGTGCATTCTCTCACCTGGAAACTGTGTCTTGCTTCACG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
CDS TCA 90 bp AAGGTCTGGGGTCCATCCTGGGCCTCGCTGGCACGCACGCAGACCTaGGGCTCCATACGCGAGGCATACTGCAGGGGTCCTACCGACTTG +
Preference number: 5 (lower is better)
Translates to: KVWGPSWASLARTQT*GSIREAYCRGPTDL
Trigger: CAAGTCGGTAGGACCCCTGCAGTATGCCTCGCGTATGGAGCCTCAGGTCTGCGTGCGTGCCAGCGAGGCCCAGGATGGACCCCAGACCTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
CDS CCA 90 bp CCATACGCGAGGCATACTGCAGGGGTCCTACCGACTTGGCTCCCATaGCATAGCGAGCCTTGGCAAGTGAGAGCCAACCCTCCTCCACCC +
Preference number: 5 (lower is better)
Translates to: PYARHTAGVLPTWLP*HSEPWQVRANPPPP
Trigger: GGGTGGAGGAGGGTTGGCTCTCACTTGCCAAGGCTCGCTATGCCATGGGAGCCAAGTCGGTAGGACCCCTGCAGTATGCCTCGCGTATGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
CDS CCA 90 bp CCTGAGGCTCCATACGCGAGGCATACTGCAGGGGTCCTACCGACTTaGCTCCCATGGCATAGCGAGCCTTGGCAAGTGAGAGCCAACCCT +
Preference number: 5 (lower is better)
Translates to: PEAPYARHTAGVLPT*LPWHSEPWQVRANP
Trigger: AGGGTTGGCTCTCACTTGCCAAGGCTCGCTATGCCATGGGAGCCAAGTCGGTAGGACCCCTGCAGTATGCCTCGCGTATGGAGCCTCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
CDS CCA 90 bp GGAGACTGGCTATATCTGCAGCCAGCTGTAGGCCATCCCGGAAGCTaGCTTGGGCCTGCCGCAGACTGTGAGGAACCAAAATTCCAAACC +
Preference number: 5 (lower is better)
Translates to: GDWLYLQPAVGHPGS*LGPAADCEEPKFQT
Trigger: GGTTTGGAATTTTGGTTCCTCACAGTCTGCGGCAGGCCCAAGCCAGCTTCCGGGATGGCCTACAGCTGGCTGCAGATATAGCCAGTCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
CDS-3UTR CAA 90 bp ATTTACACCCCACAAACAATTACATTCCCCTTCCCAACACAACTGGATAGCTCACCTAACTCTTTGGTCTaGGTGGGGCCCTTGCGCCTG +
Preference number: 5 (lower is better)
Translates to: IYTPQTITFPFPTQLDSSPNSLV*VGPLRL
Trigger: CAGGCGCAAGGGCCCCACCAAGACCAAAGAGTTAGG...TGAGCTATCCAGTTGTGTTGGGAAGGGGAATGTAATTGTTTGTGGGGTGTAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
CDS-3UTR CAA 90 bp AACAAATTAGGAAGAAATATTTACACCCCACAAACAATTACATTCCCCTTCCCAATCCCGGAAGCTGGCTaGGGCCTGCCGCAGACTGTG +
Preference number: 5 (lower is better)
Translates to: NKLGRNIYTPQTITFPFPIPEAG*GLPQTV
Trigger: CACAGTCTGCGGCAGGCCCAAGCCAGCTTCCGGGAT...TGGGAAGGGGAATGTAATTGTTTGTGGGGTGTAAATATTTCTTCCTAATTTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
CDS TCA 72 bp GGTCCATCCTGGGCCTCGCTGGCACGCACGCAGACCTaGGGCTCCATACGCGAGGCATACTGCAGGGGTCCT +
Preference number: 6 (lower is better)
Translates to: GPSWASLARTQT*GSIREAYCRGP
Trigger: AGGACCCCTGCAGTATGCCTCGCGTATGGAGCCTCAGGTCTGCGTGCGTGCCAGCGAGGCCCAGGATGGACC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
CDS CCA 72 bp GTCCTACCGACTTGGCTCCCATGGCATAGCGAGCCTTaGCAAGTGAGAGCCAACCCTCCTCCACCCTGGCGT +
Preference number: 6 (lower is better)
Translates to: VLPTWLPWHSEP*QVRANPPPPWR
Trigger: ACGCCAGGGTGGAGGAGGGTTGGCTCTCACTTGCCAAGGCTCGCTATGCCATGGGAGCCAAGTCGGTAGGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
CDS CAA 72 bp TCCAGTTCCTCCAGGTCACTGAGCAGCTGTAGGCACTaGGAGTCCAACTCCTCTCGCAGAGCCTGGACCGCC +
Preference number: 6 (lower is better)
Translates to: SSSSRSLSSCRH*ESNSSRRAWTA
Trigger: GGCGGTCCAGGCTCTGCGAGAGGAGTTGGACTCCAAGTGCCTACAGCTGCTCAGTGACCTGGAGGAACTGGA
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
CDS CCA 72 bp AGGCATACTGCAGGGGTCCTACCGACTTGGCTCCCATaGCATAGCGAGCCTTGGCAAGTGAGAGCCAACCCT +
Preference number: 6 (lower is better)
Translates to: RHTAGVLPTWLP*HSEPWQVRANP
Trigger: AGGGTTGGCTCTCACTTGCCAAGGCTCGCTATGCCATGGGAGCCAAGTCGGTAGGACCCCTGCAGTATGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
CDS CCA 72 bp CCATACGCGAGGCATACTGCAGGGGTCCTACCGACTTaGCTCCCATGGCATAGCGAGCCTTGGCAAGTGAGA +
Preference number: 6 (lower is better)
Translates to: PYARHTAGVLPT*LPWHSEPWQVR
Trigger: TCTCACTTGCCAAGGCTCGCTATGCCATGGGAGCCAAGTCGGTAGGACCCCTGCAGTATGCCTCGCGTATGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
CDS CAA 72 bp ACAGCAGATCCTAACTCTTTGGTCTTGGTGGGGCCCTaGCGCCTGCGCAGAGATGCTTCGCTAGGCCCCACT +
Preference number: 6 (lower is better)
Translates to: TADPNSLVLVGP*RLRRDASLGPT
Trigger: AGTGGGGCCTAGCGAAGCATCTCTGCGCAGGCGCAAGGGCCCCACCAAGACCAAAGAGTTAGGATCTGCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
CDS CCA 72 bp CTTGAGGAACTACAGCAGATCCTAACTCTTTGGTCTTaGTGGGGCCCTTGCGCCTGCGCAGAGATGCTTCGC +
Preference number: 6 (lower is better)
Translates to: LEELQQILTLWS*WGPCACAEMLR
Trigger: GCGAAGCATCTCTGCGCAGGCGCAAGGGCCCCACCAAGACCAAAGAGTTAGGATCTGCTGTAGTTCCTCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
CDS TCA 72 bp CCATCCCGGAAGCTGGCTTGGGCCTGCCGCAGACTGTaGGGAACCAAAATTCCAAACCAGTTCAAGGGATCT +
Preference number: 6 (lower is better)
Translates to: PSRKLAWACRRL*GTKIPNQFKGS
Trigger: AGATCCCTTGAACTGGTTTGGAATTTTGGTTCCTCACAGTCTGCGGCAGGCCCAAGCCAGCTTCCGGGATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10
CDS CCA 72 bp AGGGATCTTGAGGAACTACAGCAGATCCTAACTCTTTaGTCTTGGTGGGGCCCTTGCGCCTGCGCAGAGATG +
Preference number: 6 (lower is better)
Translates to: RDLEELQQILTL*SWWGPCACAEM
Trigger: CATCTCTGCGCAGGCGCAAGGGCCCCACCAAGACCAAAGAGTTAGGATCTGCTGTAGTTCCTCAAGATCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042493.10