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Pregenerated sensors for CCDC113 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036598

Ensembl transcript IDs: ENSMUST00000041569.5

Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp TCCTTGACGTACATCATTACCTGTGGGGCCCGGAACTCAGCCAGCTaGTTCCGTAACTTATCGTTCAAGATATGGGCTTTGGCCCTGTCC +
Preference number: 5 (lower is better)
Translates to: SLTYIITCGARNSAS*FRNLSFKIWALALS
Trigger: GGACAGGGCCAAAGCCCATATCTTGAACGATAAGTTACGGAAGCAGCTGGCTGAGTTCCGGGCCCCACAGGTAATGATGTACGTCAAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041569.5
CDS GCA 90 bp GTTTCTCAGCAAGATCTCCTTGTCCAGATTGACGTAGATCTCCATTaGCCGATGAAGCTTGTTTTTGTAGGTGTTGAGAACCTGCAGCGT +
Preference number: 5 (lower is better)
Translates to: VSQQDLLVQIDVDLH*PMKLVFVGVENLQR
Trigger: ACGCTGCAGGTTCTCAACACCTACAAAAACAAGCTTCATCGGGCAATGGAGATCTACGTCAATCTGGACAAGGAGATCTTGCTGAGAAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041569.5
CDS TCA 90 bp TTTTCCCAAGTAGCTCGTTTCTCAGCAAGATCTCCTTGTCCAGATTaGCGTAGATCTCCATTGCCCGATGAAGCTTGTTTTTGTAGGTGT +
Preference number: 5 (lower is better)
Translates to: FSQVARFSARSPCPD*RRSPLPDEACFCRC
Trigger: ACACCTACAAAAACAAGCTTCATCGGGCAATGGAGATCTACGTCAATCTGGACAAGGAGATCTTGCTGAGAAACGAGCTACTTGGGAAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041569.5
CDS CCA 90 bp CCCTGCGGCGGTTCATGTCCTCGATGTATTTCATCACTTTCTGAGTaGCCAAAATGCTCCCTTTCTTCTTGGATATGGTTTTCAGAATAT +
Preference number: 5 (lower is better)
Translates to: PCGGSCPRCISSLSE*PKCSLSSWIWFSEY
Trigger: ATATTCTGAAAACCATATCCAAGAAGAAAGGGAGCATTTTGGCCACTCAGAAAGTGATGAAATACATCGAGGACATGAACCGCCGCAGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041569.5
CDS TCA 90 bp GATATGGTTTTCAGAATATCTTTTTCAAATTCGTGCACTGCTTTCTaGACTTCATTCCACCGAATGTCGGCTTCCTCGATGATAGCCTCG +
Preference number: 5 (lower is better)
Translates to: DMVFRISFSNSCTAF*TSFHRMSASSMIAS
Trigger: CGAGGCTATCATCGAGGAAGCCGACATTCGGTGGAATGAAGTTCAGAAAGCAGTGCACGAATTTGAAAAAGATATTCTGAAAACCATATC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041569.5
CDS GCA 90 bp CTTCTTGGATATGGTTTTCAGAATATCTTTTTCAAATTCGTGCACTaGTTTCTGAACTTCATTCCACCGAATGTCGGCTTCCTCGATGAT +
Preference number: 5 (lower is better)
Translates to: LLGYGFQNIFFKFVH*FLNFIPPNVGFLDD
Trigger: ATCATCGAGGAAGCCGACATTCGGTGGAATGAAGTTCAGAAAGCAGTGCACGAATTTGAAAAAGATATTCTGAAAACCATATCCAAGAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041569.5
CDS CAA 72 bp GTTTCCATAGCTGAGCTCCTCTACCAGCCCGCACAGTaGGATGACTGGCAGCTCGCCTTCCTCCTCCGCCTG +
Preference number: 6 (lower is better)
Translates to: VSIAELLYQPAQ*DDWQLAFLLRL
Trigger: CAGGCGGAGGAGGAAGGCGAGCTGCCAGTCATCCAACTGTGCGGGCTGGTAGAGGAGCTCAGCTATGGAAAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041569.5
CDS TCA 72 bp TTCCACCGAATGTCGGCTTCCTCGATGATAGCCTCGTaGTGCTGCAGGTCCCGTTCCGCATTAGCCCGCATG +
Preference number: 6 (lower is better)
Translates to: FHRMSASSMIAS*CCRSRSALARM
Trigger: CATGCGGGCTAATGCGGAACGGGACCTGCAGCATCACGAGGCTATCATCGAGGAAGCCGACATTCGGTGGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041569.5
CDS GCA 72 bp GTGTCTTCCAGCTCCTTCTGCACAAGCTCGAGCTTTTaGTCTACAGTGAGGCCTAGCGTACGGTCCAGACCT +
Preference number: 6 (lower is better)
Translates to: VSSSSFCTSSSF*STVRPSVRSRP
Trigger: AGGTCTGGACCGTACGCTAGGCCTCACTGTAGAGCAAAAGCTCGAGCTTGTGCAGAAGGAGCTGGAAGACAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041569.5
CDS CAA 90 bp CACATCTTGATGGTCTTCTCTAGCTCCCCATTCAGGATCTTCTCCTaGACGTACATCATTACCTGTGGGGCCCGGAACTCAGCCAGCTGC +
Preference number: 6 (lower is better)
Translates to: HILMVFSSSPFRIFS*TYIITCGARNSASC
Trigger: GCAGCTGGCTGAGTTCCGGGCCCCACAGGTAATGATGTACGTCAAGGAGAAGATCCTGAATGGGGAGCTAGAGAAGACCATCAAGATGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041569.5
CDS CAA 90 bp CCTTTTAGAGACATCTCTGCGATCTCCACCTTCCGCTCCCACATCTaGATGGTCTTCTCTAGCTCCCCATTCAGGATCTTCTCCTTGACG +
Preference number: 6 (lower is better)
Translates to: PFRDISAISTFRSHI*MVFSSSPFRIFSLT
Trigger: CGTCAAGGAGAAGATCCTGAATGGGGAGCTAGAGAAGACCATCAAGATGTGGGAGCGGAAGGTGGAGATCGCAGAGATGTCTCTAAAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041569.5
CDS TCA 72 bp TCTCCATTGCCCGATGAAGCTTGTTTTTGTAGGTGTTaGGAACCTGCAGCGTGTTCCCAGAGGCCAGCTTCA +
Preference number: 6 (lower is better)
Translates to: SPLPDEACFCRC*EPAACSQRPAS
Trigger: TGAAGCTGGCCTCTGGGAACACGCTGCAGGTTCTCAACACCTACAAAAACAAGCTTCATCGGGCAATGGAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041569.5
CDS TCA 72 bp ACATCTCTGCGATCTCCACCTTCCGCTCCCACATCTTaGTGGTCTTCTCTAGCTCCCCATTCAGGATCTTCT +
Preference number: 6 (lower is better)
Translates to: TSLRSPPSAPTS*WSSLAPHSGSS
Trigger: AGAAGATCCTGAATGGGGAGCTAGAGAAGACCATCAAGATGTGGGAGCGGAAGGTGGAGATCGCAGAGATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041569.5
CDS GCA 72 bp TACATCATTACCTGTGGGGCCCGGAACTCAGCCAGCTaGTTCCGTAACTTATCGTTCAAGATATGGGCTTTG +
Preference number: 6 (lower is better)
Translates to: YIITCGARNSAS*FRNLSFKIWAL
Trigger: CAAAGCCCATATCTTGAACGATAAGTTACGGAAGCAGCTGGCTGAGTTCCGGGCCCCACAGGTAATGATGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041569.5
CDS CCA 72 bp TCAGCCAGCTGCTTCCGTAACTTATCGTTCAAGATATaGGCTTTGGCCCTGTCCTCCTCTGCTTGTATGGTT +
Preference number: 6 (lower is better)
Translates to: SASCFRNLSFKI*ALALSSSACMV
Trigger: AACCATACAAGCAGAGGAGGACAGGGCCAAAGCCCATATCTTGAACGATAAGTTACGGAAGCAGCTGGCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041569.5
CDS TCA 72 bp GTAGCTCGTTTCTCAGCAAGATCTCCTTGTCCAGATTaGCGTAGATCTCCATTGCCCGATGAAGCTTGTTTT +
Preference number: 6 (lower is better)
Translates to: VARFSARSPCPD*RRSPLPDEACF
Trigger: AAAACAAGCTTCATCGGGCAATGGAGATCTACGTCAATCTGGACAAGGAGATCTTGCTGAGAAACGAGCTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041569.5
CDS CCA 72 bp GCTGCTTCCGTAACTTATCGTTCAAGATATGGGCTTTaGCCCTGTCCTCCTCTGCTTGTATGGTTTCTTTTT +
Preference number: 6 (lower is better)
Translates to: AASVTYRSRYGL*PCPPLLVWFLF
Trigger: AAAAAGAAACCATACAAGCAGAGGAGGACAGGGCCAAAGCCCATATCTTGAACGATAAGTTACGGAAGCAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041569.5
CDS CAA 72 bp AGCTGCTTCCGTAACTTATCGTTCAAGATATGGGCTTaGGCCCTGTCCTCCTCTGCTTGTATGGTTTCTTTT +
Preference number: 6 (lower is better)
Translates to: SCFRNLSFKIWA*ALSSSACMVSF
Trigger: AAAAGAAACCATACAAGCAGAGGAGGACAGGGCCAAAGCCCATATCTTGAACGATAAGTTACGGAAGCAGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041569.5
CDS GCA 72 bp CAAGATCTCCTTGTCCAGATTGACGTAGATCTCCATTaGCCGATGAAGCTTGTTTTTGTAGGTGTTGAGAAC +
Preference number: 6 (lower is better)
Translates to: QDLLVQIDVDLH*PMKLVFVGVEN
Trigger: GTTCTCAACACCTACAAAAACAAGCTTCATCGGGCAATGGAGATCTACGTCAATCTGGACAAGGAGATCTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041569.5
CDS TCA 72 bp TTCAGAATATCTTTTTCAAATTCGTGCACTGCTTTCTaGACTTCATTCCACCGAATGTCGGCTTCCTCGATG +
Preference number: 6 (lower is better)
Translates to: FRISFSNSCTAF*TSFHRMSASSM
Trigger: CATCGAGGAAGCCGACATTCGGTGGAATGAAGTTCAGAAAGCAGTGCACGAATTTGAAAAAGATATTCTGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041569.5
CDS CCA 72 bp GGTTCATGTCCTCGATGTATTTCATCACTTTCTGAGTaGCCAAAATGCTCCCTTTCTTCTTGGATATGGTTT +
Preference number: 6 (lower is better)
Translates to: GSCPRCISSLSE*PKCSLSSWIWF
Trigger: AAACCATATCCAAGAAGAAAGGGAGCATTTTGGCCACTCAGAAAGTGATGAAATACATCGAGGACATGAACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041569.5