Pregenerated sensors for CCDC112 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000071855Ensembl transcript IDs: ENSMUST00000072835.7, ENSMUST00000236934.2, ENSMUST00000238189.2
Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAGGTGCTTTCTATGAAAAGCTGGCTTGAGTTCTGCTTTCACACATaGAGTTTTCTACTTTGCAGTGTCATGACATCAGTAAACATACTA | + |
|
Preference number: 1 (lower is better) Translates to: KVLSMKSWLEFCFHT*SFLLCSVMTSVNIL Trigger: TAGTATGTTTACTGATGTCATGACACTGCAAAGTAGAAAACTTCATGTGTGAAAGCAGAACTCAAGCCAGCTTTTCATAGAAAGCACCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| 3UTR CCA 72 bp | ATACTAGCCTACTTCAAAAGAAAGATGTCCCTACTTTaGGGCAAGCATAAGAAAATGGTGCCAGCCAATAAG | + |
|
Preference number: 3 (lower is better) Translates to: ILAYFKRKMSLL*GKHKKMVPANK Trigger: CTTATTGGCTGGCACCATTTTCTTATGCTTGCCCCAAAGTAGGGACATCTTTCTTTTGAAGTAGGCTAGTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| 3UTR TCA 72 bp | TCTATGAAAAGCTGGCTTGAGTTCTGCTTTCACACATaGAGTTTTCTACTTTGCAGTGTCATGACATCAGTA | + |
|
Preference number: 3 (lower is better) Translates to: SMKSWLEFCFHT*SFLLCSVMTSV Trigger: TACTGATGTCATGACACTGCAAAGTAGAAAACTTCATGTGTGAAAGCAGAACTCAAGCCAGCTTTTCATAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS-3UTR GCA 90 bp | GTTGCAGGAAATCCCAAGGATGCCATTATAATATATGAAATAGGAACATGTAGGCCCGGCGACTGCTGTTaGCGCCGCCGCCACCACCAC | + |
|
Preference number: 4 (lower is better) Translates to: VAGNPKDAIIIYEIGTCRPGDCC*RRRHHH Trigger: GTGGTGGTGGCGGCGGCGGCAACAGCAGTCGCCGGG...CCTACATGTTCCTATTTCATATATTATAATGGCATCCTTGGGATTTCCTGCAAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS-3UTR CCA 90 bp | GTTGCAGGAAATCCCAAGGATGCCATTATAATATATGAAATAGGAACATGTAGGGCCCTGTGTGGGATATaGAGAAGTGGCCCAGAGCCT | + |
|
Preference number: 4 (lower is better) Translates to: VAGNPKDAIIIYEIGTCRALCGI*RSGPEP Trigger: AGGCTCTGGGCCACTTCTCCATATCCCACACAGGGC...CCTACATGTTCCTATTTCATATATTATAATGGCATCCTTGGGATTTCCTGCAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS-3UTR TCA 90 bp | CCCAAGGATGCCATTATAATATATGAAATAGGAACATGTAGGAAGGGAGGTTATTCTCTTCCTCCTCTCTaGGCTGGGAAGCAAGCTTCG | + |
|
Preference number: 4 (lower is better) Translates to: PKDAIIIYEIGTCRKGGYSLPPL*AGKQAS Trigger: CGAAGCTTGCTTCCCAGCTCAGAGAGGAGGAAGAGA...ATAACCTCCCTTCCTACATGTTCCTATTTCATATATTATAATGGCATCCTTGGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS-3UTR GCA 90 bp | GTTGCAGGAAATCCCAAGGATGCCATTATAATATATGAAATAGGAACATGTAGGCGCTGCCGCTCTCTCTaGTGCTTTCTCTCCTTCTCT | + |
|
Preference number: 4 (lower is better) Translates to: VAGNPKDAIIIYEIGTCRRCRSL*CFLSFS Trigger: AGAGAAGGAGAGAAAGCAGCAGAGAGAGCGGCAGCG...CCTACATGTTCCTATTTCATATATTATAATGGCATCCTTGGGATTTCCTGCAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS-3UTR CCA 90 bp | GTTGCAGGAAATCCCAAGGATGCCATTATAATATATGAAATAGGAACATGTAGGAGGAATGGCCCTGTGTaGGATATGGAGAAGTGGCCC | + |
|
Preference number: 4 (lower is better) Translates to: VAGNPKDAIIIYEIGTCRRNGPV*DMEKWP Trigger: GGGCCACTTCTCCATATCCCACACAGGGCCATTCCT...CCTACATGTTCCTATTTCATATATTATAATGGCATCCTTGGGATTTCCTGCAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS-3UTR TCA 90 bp | CCCAAGGATGCCATTATAATATATGAAATAGGAACATGTAGGAAGGGAGGTTATTCTTCTGCTTTGCTTTaGGAAGGCAGAGGCACGGTG | + |
|
Preference number: 4 (lower is better) Translates to: PKDAIIIYEIGTCRKGGYSSALL*EGRGTV Trigger: CACCGTGCCTCTGCCTTCTCAAAGCAAAGCAGAAGA...ATAACCTCCCTTCCTACATGTTCCTATTTCATATATTATAATGGCATCCTTGGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS-3UTR TCA 90 bp | CCCAAGGATGCCATTATAATATATGAAATAGGAACATGTAGGAAGGGAGGTTATAAGTGGCCCAGAGCCTaGCGGACCTATCTTTTTGGT | + |
|
Preference number: 4 (lower is better) Translates to: PKDAIIIYEIGTCRKGGYKWPRA*RTYLFG Trigger: ACCAAAAAGATAGGTCCGTCAGGCTCTGGGCCACTT...ATAACCTCCCTTCCTACATGTTCCTATTTCATATATTATAATGGCATCCTTGGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS-3UTR GCA 90 bp | CCCAAGGATGCCATTATAATATATGAAATAGGAACATGTAGGAAGGGAGGTTATCTTCCAAGCTTCCACTaGCAGCTTCTGCTTCTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: PKDAIIIYEIGTCRKGGYLPSFH*QLLLLP Trigger: AGGAAGAAGCAGAAGCTGGCAGTGGAAGCTTGGAAG...ATAACCTCCCTTCCTACATGTTCCTATTTCATATATTATAATGGCATCCTTGGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS-3UTR CCA 90 bp | GTTGCAGGAAATCCCAAGGATGCCATTATAATATATGAAATAGGAACATGTAGGCTCTTTCTTGAAACCTaGCAAGCTCATCCGCAGCAG | + |
|
Preference number: 4 (lower is better) Translates to: VAGNPKDAIIIYEIGTCRLFLET*QAHPQQ Trigger: CTGCTGCGGATGAGCTTGCCAGGTTTCAAGAAAGAG...CCTACATGTTCCTATTTCATATATTATAATGGCATCCTTGGGATTTCCTGCAAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS-3UTR GCA 90 bp | CCCAAGGATGCCATTATAATATATGAAATAGGAACATGTAGGAAGGGAGGTTATTGCCGCCCTCCCGTTTaGTGGAGGAATTTTTCAAAT | + |
|
Preference number: 4 (lower is better) Translates to: PKDAIIIYEIGTCRKGGYCRPPV*WRNFSN Trigger: ATTTGAAAAATTCCTCCAGCAAACGGGAGGGCGGCA...ATAACCTCCCTTCCTACATGTTCCTATTTCATATATTATAATGGCATCCTTGGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS-3UTR CCA 90 bp | GTTGCAGGAAATCCCAAGGATGCCATTATAATATATGAAATAGGAACATGTAGGACTTTCACAAAGTTCTaGTGGTCCAAGGCATCCCAG | + |
|
Preference number: 4 (lower is better) Translates to: VAGNPKDAIIIYEIGTCRTFTKF*WSKASQ Trigger: CTGGGATGCCTTGGACCACCAGAACTTTGTGAAAGT...CCTACATGTTCCTATTTCATATATTATAATGGCATCCTTGGGATTTCCTGCAAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS-3UTR GCA 90 bp | CCCAAGGATGCCATTATAATATATGAAATAGGAACATGTAGGAAGGGAGGTTATCTCTGTTCCTCTCTCTaGTTTGGACTATCTTCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: PKDAIIIYEIGTCRKGGYLCSSL*FGLSSA Trigger: AGCAGAAGATAGTCCAAAGCAGAGAGAGGAACAGAG...ATAACCTCCCTTCCTACATGTTCCTATTTCATATATTATAATGGCATCCTTGGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS-3UTR GCA 90 bp | CCCAAGGATGCCATTATAATATATGAAATAGGAACATGTAGGAAGGGAGGTTATCTTCTCTGCCTTCTCTaGCTTTTCCTTTATCTCCTG | + |
|
Preference number: 4 (lower is better) Translates to: PKDAIIIYEIGTCRKGGYLLCLL*LFLYLL Trigger: CAGGAGATAAAGGAAAAGGCAGAGAAGGCAGAGAAG...ATAACCTCCCTTCCTACATGTTCCTATTTCATATATTATAATGGCATCCTTGGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS-3UTR CCA 90 bp | CCCAAGGATGCCATTATAATATATGAAATAGGAACATGTAGGAAGGGAGGTTATCGCCCTCCCGTTTGCTaGAGGAATTTTTCAAATTCT | + |
|
Preference number: 4 (lower is better) Translates to: PKDAIIIYEIGTCRKGGYRPPVC*RNFSNS Trigger: AGAATTTGAAAAATTCCTCCAGCAAACGGGAGGGCG...ATAACCTCCCTTCCTACATGTTCCTATTTCATATATTATAATGGCATCCTTGGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS-3UTR CCA 90 bp | GTTGCAGGAAATCCCAAGGATGCCATTATAATATATGAAATAGGAACATGTAGGACGGACCTATCTTTTTaGTTCGTTCTTCCCAGCCTT | + |
|
Preference number: 4 (lower is better) Translates to: VAGNPKDAIIIYEIGTCRTDLSF*FVLPSL Trigger: AAGGCTGGGAAGAACGAACCAAAAAGATAGGTCCGT...CCTACATGTTCCTATTTCATATATTATAATGGCATCCTTGGGATTTCCTGCAAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS-3UTR TCA 90 bp | GTTGCAGGAAATCCCAAGGATGCCATTATAATATATGAAATAGGAACATGTAGGTTTCTGCTGTACGTATaGATTCTGCTTTCTTCGTCC | + |
|
Preference number: 4 (lower is better) Translates to: VAGNPKDAIIIYEIGTCRFLLYV*ILLSSS Trigger: GGACGAAGAAAGCAGAATTCATACGTACAGCAGAAA...CCTACATGTTCCTATTTCATATATTATAATGGCATCCTTGGGATTTCCTGCAAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS-3UTR TCA 90 bp | GTTGCAGGAAATCCCAAGGATGCCATTATAATATATGAAATAGGAACATGTAGGCTGTCTTCCTGCTGTTaGTCAGTTTGTTTTCCAGTT | + |
|
Preference number: 4 (lower is better) Translates to: VAGNPKDAIIIYEIGTCRLSSCC*SVCFPV Trigger: AACTGGAAAACAAACTGATCAACAGCAGGAAGACAG...CCTACATGTTCCTATTTCATATATTATAATGGCATCCTTGGGATTTCCTGCAAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS-3UTR TCA 90 bp | CCCAAGGATGCCATTATAATATATGAAATAGGAACATGTAGGAAGGGAGGTTATCTTCCATCATTTCTCTaGGCTTCTCGACAAAATCAG | + |
|
Preference number: 4 (lower is better) Translates to: PKDAIIIYEIGTCRKGGYLPSFL*ASRQNQ Trigger: CTGATTTTGTCGAGAAGCTCAGAGAAATGATGGAAG...ATAACCTCCCTTCCTACATGTTCCTATTTCATATATTATAATGGCATCCTTGGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS-3UTR TCA 90 bp | CCCAAGGATGCCATTATAATATATGAAATAGGAACATGTAGGAAGGGAGGTTATTGTAAATCTCTTTCTTaGAACCTGGCAAGCTCATCC | + |
|
Preference number: 4 (lower is better) Translates to: PKDAIIIYEIGTCRKGGYCKSLS*NLASSS Trigger: GGATGAGCTTGCCAGGTTTCAAGAAAGAGATTTACA...ATAACCTCCCTTCCTACATGTTCCTATTTCATATATTATAATGGCATCCTTGGG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS-3UTR GCA 90 bp | CCCAAGGATGCCATTATAATATATGAAATAGGAACATGTAGGAAGGGAGGTTATCTGTTGCTGGATTTTTaGTCTTTCTGTCTTCCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: PKDAIIIYEIGTCRKGGYLLLDF*SFCLPA Trigger: AGCAGGAAGACAGAAAGAGCAAAAATCCAGCAACAG...ATAACCTCCCTTCCTACATGTTCCTATTTCATATATTATAATGGCATCCTTGGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS-3UTR GCA 90 bp | CCCAAGGATGCCATTATAATATATGAAATAGGAACATGTAGGAAGGGAGGTTATCTTTGGACTATCTTCTaGTTTGCTTTGAGAAGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: PKDAIIIYEIGTCRKGGYLWTIF*FALRRQ Trigger: CTGCCTTCTCAAAGCAAAGCAGAAGATAGTCCAAAG...ATAACCTCCCTTCCTACATGTTCCTATTTCATATATTATAATGGCATCCTTGGG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS-3UTR GCA 90 bp | GTTGCAGGAAATCCCAAGGATGCCATTATAATATATGAAATAGGAACATGTAGGTTTTCCTTTATCTCCTaGTCAAGCCTCAGGAACTCT | + |
|
Preference number: 4 (lower is better) Translates to: VAGNPKDAIIIYEIGTCRFSFIS*SSLRNS Trigger: AGAGTTCCTGAGGCTTGAGCAGGAGATAAAGGAAAA...CCTACATGTTCCTATTTCATATATTATAATGGCATCCTTGGGATTTCCTGCAAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS-3UTR CCA 90 bp | CCCAAGGATGCCATTATAATATATGAAATAGGAACATGTAGGAAGGGAGGTTATTTGGCCAACTGTTGCTaGATTTTTGCTCTTTCTGTC | + |
|
Preference number: 4 (lower is better) Translates to: PKDAIIIYEIGTCRKGGYLANCC*IFALSV Trigger: GACAGAAAGAGCAAAAATCCAGCAACAGTTGGCCAA...ATAACCTCCCTTCCTACATGTTCCTATTTCATATATTATAATGGCATCCTTGGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS-3UTR CCA 90 bp | GTTGCAGGAAATCCCAAGGATGCCATTATAATATATGAAATAGGAACATGTAGGTTCCTCTCTCTGCTTTaGACTATCTTCTGCTTTGCT | + |
|
Preference number: 4 (lower is better) Translates to: VAGNPKDAIIIYEIGTCRFLSLL*TIFCFA Trigger: AGCAAAGCAGAAGATAGTCCAAAGCAGAGAGAGGAA...CCTACATGTTCCTATTTCATATATTATAATGGCATCCTTGGGATTTCCTGCAAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS-3UTR GCA 90 bp | CCCAAGGATGCCATTATAATATATGAAATAGGAACATGTAGGAAGGGAGGTTATATCTTGGCCAACTGTTaGTGGATTTTTGCTCTTTCT | + |
|
Preference number: 4 (lower is better) Translates to: PKDAIIIYEIGTCRKGGYILANC*WIFALS Trigger: AGAAAGAGCAAAAATCCAGCAACAGTTGGCCAAGAT...ATAACCTCCCTTCCTACATGTTCCTATTTCATATATTATAATGGCATCCTTGGG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS-3UTR CCA 90 bp | CCCAAGGATGCCATTATAATATATGAAATAGGAACATGTAGGAAGGGAGGTTATCGTTGTTATGTATCTTaGCCAACTGTTGCTGGATTT | + |
|
Preference number: 4 (lower is better) Translates to: PKDAIIIYEIGTCRKGGYRCYVS*PTVAGF Trigger: AAATCCAGCAACAGTTGGCCAAGATACATAACAACG...ATAACCTCCCTTCCTACATGTTCCTATTTCATATATTATAATGGCATCCTTGGG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS-3UTR TCA 90 bp | GTTGCAGGAAATCCCAAGGATGCCATTATAATATATGAAATAGGAACATGTAGGTCTTTCAGCTGGTTCTaGAGTTTCTTTACGTTGTTA | + |
|
Preference number: 4 (lower is better) Translates to: VAGNPKDAIIIYEIGTCRSFSWF*SFFTLL Trigger: TAACAACGTAAAGAAACTTCAGAACCAGCTGAAAGA...CCTACATGTTCCTATTTCATATATTATAATGGCATCCTTGGGATTTCCTGCAAC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS-3UTR CCA 90 bp | GTTGCAGGAAATCCCAAGGATGCCATTATAATATATGAAATAGGAACATGTAGGAAAGTCAGGAATTTTTaGTACCACTTCTCATGTTGC | + |
|
Preference number: 4 (lower is better) Translates to: VAGNPKDAIIIYEIGTCRKVRNF*YHFSCC Trigger: GCAACATGAGAAGTGGTACCAAAAATTCCTGACTTT...CCTACATGTTCCTATTTCATATATTATAATGGCATCCTTGGGATTTCCTGCAAC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS TCA 90 bp | CTTCCTGCTCCCGCCTCTGCTGGGTGTAGCTCTCCAGGAGCAGCTTaGGCTTGGACTGCCGCTGCCGCTCTCTCTGCTGCTTTCTCTCCT | + |
|
Preference number: 5 (lower is better) Translates to: LPAPASAGCSSPGAA*AWTAAAALSAAFSP Trigger: AGGAGAGAAAGCAGCAGAGAGAGCGGCAGCGGCAGTCCAAGCTCAAGCTGCTCCTGGAGAGCTACACCCAGCAGAGGCGGGAGCAGGAAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072835.7 ENSMUST00000238189.2 |
||
| CDS GCA 90 bp | CTTCTGCTTCTTCCTCTGTTCCTCTCTCTGCTTTGGACTATCTTCTaGTTTGCTTTGAGAAGGCAGAGGCACGGTGTCCACCTTTTCTTT | + |
|
Preference number: 5 (lower is better) Translates to: LLLLPLFLSLLWTIF*FALRRQRHGVHLFF Trigger: AAAGAAAAGGTGGACACCGTGCCTCTGCCTTCTCAAAGCAAAGCAGAAGATAGTCCAAAGCAGAGAGAGGAACAGAGGAAGAAGCAGAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072835.7 ENSMUST00000238189.2 |
||
| CDS GCA 90 bp | GCTTCTTCCTCTGTTCCTCTCTCTGCTTTGGACTATCTTCTGCTTTaGTTTGAGAAGGCAGAGGCACGGTGTCCACCTTTTCTTTTAACT | + |
|
Preference number: 5 (lower is better) Translates to: ASSSVPLSALDYLLL*FEKAEARCPPFLLT Trigger: AGTTAAAAGAAAAGGTGGACACCGTGCCTCTGCCTTCTCAAAGCAAAGCAGAAGATAGTCCAAAGCAGAGAGAGGAACAGAGGAAGAAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072835.7 ENSMUST00000238189.2 |
||
| CDS-3UTR CAA 90 bp | CCCAAGGATGCCATTATAATATATGAAATAGGAACATGTAGGAAGGGAGGTTATCTGCCGCCCTCCCGTTaGCTGGAGGAATTTTTCAAA | + |
|
Preference number: 5 (lower is better) Translates to: PKDAIIIYEIGTCRKGGYLPPSR*LEEFFK Trigger: TTTGAAAAATTCCTCCAGCAAACGGGAGGGCGGCAG...ATAACCTCCCTTCCTACATGTTCCTATTTCATATATTATAATGGCATCCTTGGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS TCA 90 bp | TTTTCTTCTAAAGTCAGGAATTTTTGGTACCACTTCTCATGTTGCTaGACTTCATCCAGAGTTCTTCCCGGAAGGTGTTCTACAACCTCC | + |
|
Preference number: 5 (lower is better) Translates to: FSSKVRNFWYHFSCC*TSSRVLPGRCSTTS Trigger: GGAGGTTGTAGAACACCTTCCGGGAAGAACTCTGGATGAAGTTCAGCAACATGAGAAGTGGTACCAAAAATTCCTGACTTTAGAAGAAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS-3UTR CAA 90 bp | CCCAAGGATGCCATTATAATATATGAAATAGGAACATGTAGGAAGGGAGGTTATATCTTCTGCTTTGCTTaGAGAAGGCAGAGGCACGGT | + |
|
Preference number: 5 (lower is better) Translates to: PKDAIIIYEIGTCRKGGYIFCFA*RRQRHG Trigger: ACCGTGCCTCTGCCTTCTCAAAGCAAAGCAGAAGAT...ATAACCTCCCTTCCTACATGTTCCTATTTCATATATTATAATGGCATCCTTGGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS-3UTR CAA 90 bp | CCCAAGGATGCCATTATAATATATGAAATAGGAACATGTAGGAAGGGAGGTTATGACGGACCTATCTTTTaGGTTCGTTCTTCCCAGCCT | + |
|
Preference number: 5 (lower is better) Translates to: PKDAIIIYEIGTCRKGGYDGPIF*VRSSQP Trigger: AGGCTGGGAAGAACGAACCAAAAAGATAGGTCCGTC...ATAACCTCCCTTCCTACATGTTCCTATTTCATATATTATAATGGCATCCTTGGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS-3UTR CAA 90 bp | CCCAAGGATGCCATTATAATATATGAAATAGGAACATGTAGGAAGGGAGGTTATTCTGAAGTCGCCTCTTaGGTTGTAGAAATGACTGTG | + |
|
Preference number: 5 (lower is better) Translates to: PKDAIIIYEIGTCRKGGYSEVAS*VVEMTV Trigger: CACAGTCATTTCTACAACCAAAGAGGCGACTTCAGA...ATAACCTCCCTTCCTACATGTTCCTATTTCATATATTATAATGGCATCCTTGGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS-3UTR CAA 90 bp | CCCAAGGATGCCATTATAATATATGAAATAGGAACATGTAGGAAGGGAGGTTATCTGCTGTTGATCAGTTaGTTTTCCAGTTCTTCCAGC | + |
|
Preference number: 5 (lower is better) Translates to: PKDAIIIYEIGTCRKGGYLLLIS*FSSSSS Trigger: GCTGGAAGAACTGGAAAACAAACTGATCAACAGCAG...ATAACCTCCCTTCCTACATGTTCCTATTTCATATATTATAATGGCATCCTTGGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS-3UTR CAA 90 bp | GTTGCAGGAAATCCCAAGGATGCCATTATAATATATGAAATAGGAACATGTAGGTTCAAATTCTACCACTaGTTCTGGAAGCGTCCTCTG | + |
|
Preference number: 5 (lower is better) Translates to: VAGNPKDAIIIYEIGTCRFKFYH*FWKRPL Trigger: CAGAGGACGCTTCCAGAACAAGTGGTAGAATTTGAA...CCTACATGTTCCTATTTCATATATTATAATGGCATCCTTGGGATTTCCTGCAAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS-3UTR CAA 90 bp | CCCAAGGATGCCATTATAATATATGAAATAGGAACATGTAGGAAGGGAGGTTATGGCTTCCCCTTATGTTaGTTCCTCACTTTCACAAAG | + |
|
Preference number: 5 (lower is better) Translates to: PKDAIIIYEIGTCRKGGYGFPLC*FLTFTK Trigger: CTTTGTGAAAGTGAGGAACAAACATAAGGGGAAGCC...ATAACCTCCCTTCCTACATGTTCCTATTTCATATATTATAATGGCATCCTTGGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS-3UTR CAA 90 bp | CCCAAGGATGCCATTATAATATATGAAATAGGAACATGTAGGAAGGGAGGTTATTCTGTCTTCCTGCTGTaGATCAGTTTGTTTTCCAGT | + |
|
Preference number: 5 (lower is better) Translates to: PKDAIIIYEIGTCRKGGYSVFLL*ISLFSS Trigger: ACTGGAAAACAAACTGATCAACAGCAGGAAGACAGA...ATAACCTCCCTTCCTACATGTTCCTATTTCATATATTATAATGGCATCCTTGGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS-3UTR CAA 90 bp | CCCAAGGATGCCATTATAATATATGAAATAGGAACATGTAGGAAGGGAGGTTATTATCTTGGCCAACTGTaGCTGGATTTTTGCTCTTTC | + |
|
Preference number: 5 (lower is better) Translates to: PKDAIIIYEIGTCRKGGYYLGQL*LDFCSF Trigger: GAAAGAGCAAAAATCCAGCAACAGTTGGCCAAGATA...ATAACCTCCCTTCCTACATGTTCCTATTTCATATATTATAATGGCATCCTTGGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS-3UTR CAA 90 bp | GTTGCAGGAAATCCCAAGGATGCCATTATAATATATGAAATAGGAACATGTAGGACGTTGTTATGTATCTaGGCCAACTGTTGCTGGATT | + |
|
Preference number: 5 (lower is better) Translates to: VAGNPKDAIIIYEIGTCRTLLCI*ANCCWI Trigger: AATCCAGCAACAGTTGGCCAAGATACATAACAACGT...CCTACATGTTCCTATTTCATATATTATAATGGCATCCTTGGGATTTCCTGCAAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072835.7 |
||
| CDS GCA 72 bp | ATTCCACCTGAAGCACTACAGCCGCCATCACTCTGTTaGGGCGTCGGCGCCGCTCCCACGCCGGTCCCCGCA | + |
|
Preference number: 6 (lower is better) Translates to: IPPEALQPPSLC*GVGAAPTPVPA Trigger: TGCGGGGACCGGCGTGGGAGCGGCGCCGACGCCGCAACAGAGTGATGGCGGCTGTAGTGCTTCAGGTGGAAT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072835.7 ENSMUST00000236934.2 |
||
| CDS TCA 72 bp | CCCGCCTCTGCTGGGTGTAGCTCTCCAGGAGCAGCTTaGGCTTGGACTGCCGCTGCCGCTCTCTCTGCTGCT | + |
|
Preference number: 6 (lower is better) Translates to: PASAGCSSPGAA*AWTAAAALSAA Trigger: AGCAGCAGAGAGAGCGGCAGCGGCAGTCCAAGCTCAAGCTGCTCCTGGAGAGCTACACCCAGCAGAGGCGGG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072835.7 ENSMUST00000238189.2 |
||
| CDS TCA 72 bp | GGCCCTGTGTGGGATATGGAGAAGTGGCCCAGAGCCTaGCGGACCTATCTTTTTGGTTCGTTCTTCCCAGCC | + |
|
Preference number: 6 (lower is better) Translates to: GPVWDMEKWPRA*RTYLFGSFFPA Trigger: GGCTGGGAAGAACGAACCAAAAAGATAGGTCCGTCAGGCTCTGGGCCACTTCTCCATATCCCACACAGGGCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000072835.7 ENSMUST00000238189.2 |
||
| CDS CCA 72 bp | CCTTGTCGCCAGGTAGGAATGGCCCTGTGTGGGATATaGAGAAGTGGCCCAGAGCCTGACGGACCTATCTTT | + |
|
Preference number: 6 (lower is better) Translates to: PCRQVGMALCGI*RSGPEPDGPIF Trigger: AAAGATAGGTCCGTCAGGCTCTGGGCCACTTCTCCATATCCCACACAGGGCCATTCCTACCTGGCGACAAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072835.7 ENSMUST00000238189.2 |
||
| CDS CCA 72 bp | TTTCCGAATTACCCAGCGCCCAGGACTCGATCCTCCTaGAGACGGCACTCAGCTCATTATTGGTTGTTTTCT | + |
|
Preference number: 6 (lower is better) Translates to: FPNYPAPRTRSS*RRHSAHYWLFS Trigger: AGAAAACAACCAATAATGAGCTGAGTGCCGTCTCCAGGAGGATCGAGTCCTGGGCGCTGGGTAATTCGGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072835.7 ENSMUST00000236934.2 |
||
| CDS CAA 90 bp | CTGCCGCCCTCCCGTTTGCTGGAGGAATTTTTCAAATTCTACCACTaGTTCTGGAAGCGTCCTCTGTGTCACTCTGTCTACGGGAACTTT | + |
|
Preference number: 6 (lower is better) Translates to: LPPSRLLEEFFKFYH*FWKRPLCHSVYGNF Trigger: AAAGTTCCCGTAGACAGAGTGACACAGAGGACGCTTCCAGAACAAGTGGTAGAATTTGAAAAATTCCTCCAGCAAACGGGAGGGCGGCAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000072835.7 ENSMUST00000236934.2 |
||
| CDS TCA 72 bp | TTTCCAGTTTTGAAGCTGAAAAGAACGAATTCCACCTaGAGCACTACAGCCGCCATCACTCTGTTGCGGCGT | + |
|
Preference number: 6 (lower is better) Translates to: FPVLKLKRTNST*STTAAITLLRR Trigger: ACGCCGCAACAGAGTGATGGCGGCTGTAGTGCTTCAGGTGGAATTCGTTCTTTTCAGCTTCAAAACTGGAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072835.7 ENSMUST00000236934.2 |
||
| CDS CAA 72 bp | TCCCGTTTGCTGGAGGAATTTTTCAAATTCTACCACTaGTTCTGGAAGCGTCCTCTGTGTCACTCTGTCTAC | + |
|
Preference number: 6 (lower is better) Translates to: SRLLEEFFKFYH*FWKRPLCHSVY Trigger: GTAGACAGAGTGACACAGAGGACGCTTCCAGAACAAGTGGTAGAATTTGAAAAATTCCTCCAGCAAACGGGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000072835.7 ENSMUST00000236934.2 |
||
| CDS TCA 72 bp | AAAGTCAGGAATTTTTGGTACCACTTCTCATGTTGCTaGACTTCATCCAGAGTTCTTCCCGGAAGGTGTTCT | + |
|
Preference number: 6 (lower is better) Translates to: KVRNFWYHFSCC*TSSRVLPGRCS Trigger: AGAACACCTTCCGGGAAGAACTCTGGATGAAGTTCAGCAACATGAGAAGTGGTACCAAAAATTCCTGACTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000072835.7 ENSMUST00000238189.2 |
||
| CDS CAA 90 bp | TCTCTGAGCTTCTCGACAATTTCTGTCTTCCTGCTGTTGATCAGTTaGTTTTCCAGTTCTTCCAGCATATTATACTCAGTTCTGAAGTCG | + |
|
Preference number: 6 (lower is better) Translates to: SLSFSTISVFLLLIS*FSSSSSILYSVLKS Trigger: CGACTTCAGAACTGAGTATAATATGCTGGAAGAACTGGAAAACAAACTGATCAACAGCAGGAAGACAGAAATTGTCGAGAAGCTCAGAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236934.2 |
||
| CDS CAA 72 bp | TCTCTGAGCTTCTCGACAATTTCTGTCTTCCTGCTGTaGATCAGTTTGTTTTCCAGTTCTTCCAGCATATTA | + |
|
Preference number: 6 (lower is better) Translates to: SLSFSTISVFLL*ISLFSSSSSIL Trigger: TAATATGCTGGAAGAACTGGAAAACAAACTGATCAACAGCAGGAAGACAGAAATTGTCGAGAAGCTCAGAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236934.2 |
||
| CDS CAA 90 bp | TCCATCATTTCTCTGAGCTTCTCGACAATTTCTGTCTTCCTGCTGTaGATCAGTTTGTTTTCCAGTTCTTCCAGCATATTATACTCAGTT | + |
|
Preference number: 6 (lower is better) Translates to: SIISLSFSTISVFLL*ISLFSSSSSILYSV Trigger: AACTGAGTATAATATGCTGGAAGAACTGGAAAACAAACTGATCAACAGCAGGAAGACAGAAATTGTCGAGAAGCTCAGAGAAATGATGGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236934.2 |
||