Pregenerated sensors for CCDC110 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000071104Ensembl transcript IDs: ENSMUST00000095326.10, ENSMUST00000174815.3
Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CTGGGGTGGAATATCTGTGCCCTGAGGGAGACCAGTGTCACTGTTACTACTGAAAAATCCTTTTCAGGATaGATGCTGAATACTAGACTT | + |
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Preference number: 2 (lower is better) Translates to: LGWNICALRETSVTVTTEKSFSG*MLNTRL Trigger: AAGTCTAGTATTCAGCATGCATCCTGAAAAGGATTT...TTCAGTAGTAACAGTGACACTGGTCTCCCTCAGGGCACAGATATTCCACCCCAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000174815.3 |
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| 3UTR-3UTR CCA 90 bp | CTGGGGTGGAATATCTGTGCCCTGAGGGAGACCAGTGTCACTGTTACTACTGAATTCCGAGTTAAATTGTaGGGTTTCTACTTCAACAAT | + |
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Preference number: 2 (lower is better) Translates to: LGWNICALRETSVTVTTEFRVKL*GFYFNN Trigger: ATTGTTGAAGTAGAAACCCCACAATTTAACTCGGAA...TTCAGTAGTAACAGTGACACTGGTCTCCCTCAGGGCACAGATATTCCACCCCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174815.3 |
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| 3UTR TCA 72 bp | CTGTGCCCTGAGGGAGACCAGTGTCACTGTTACTACTaGAGGTCTCTCCCATCGAATGGAGAGTCTTGGTGG | + |
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Preference number: 3 (lower is better) Translates to: LCPEGDQCHCYY*RSLPSNGESWW Trigger: CCACCAAGACTCTCCATTCGATGGGAGAGACCTTCAGTAGTAACAGTGACACTGGTCTCCCTCAGGGCACAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174815.3 |
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| 3UTR CCA 72 bp | GTGTCACTGTTACTACTGAAGGTCTCTCCCATCGAATaGAGAGTCTTGGTGGAAGGTATTTCTTCTTGTGTC | + |
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Preference number: 3 (lower is better) Translates to: VSLLLLKVSPIE*RVLVEGISSCV Trigger: GACACAAGAAGAAATACCTTCCACCAAGACTCTCCATTCGATGGGAGAGACCTTCAGTAGTAACAGTGACAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174815.3 |
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| 3UTR CAA 72 bp | GTGGCGCTGGGCTGCTCCGAAGTGTTCATAGCTTTCTaGGGAGGTGAGTTATCAGCGGTAGTTCTCAGGCCC | + |
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Preference number: 4 (lower is better) Translates to: VALGCSEVFIAF*GGELSAVVLRP Trigger: GGGCCTGAGAACTACCGCTGATAACTCACCTCCCAAGAAAGCTATGAACACTTCGGAGCAGCCCAGCGCCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174815.3 |
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| CDS-3UTR CCA 90 bp | GGCTGCTCCGAAGTGTTCATAGCTTTCTTGGGAGGTGAGTTATCAGCGGTAGTTCGCGAGGTGCTTCTCTaGAACAGACCCGAGCACAGC | + |
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Preference number: 4 (lower is better) Translates to: GCSEVFIAFLGGELSAVVREVLL*NRPEHS Trigger: GCTGTGCTCGGGTCTGTTCCAGAGAAGCACCTCGCG...AACTACCGCTGATAACTCACCTCCCAAGAAAGCTATGAACACTTCGGAGCAGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174815.3 |
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| CDS-3UTR CCA 90 bp | ACCAGTGTCACTGTTACTACTGAAGGTCTCTCCCATCGAATGGAGAGTCTTGGTCCCGAGCACAGCTTTTaGAGCTGGAAGGTAGCCGGG | + |
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Preference number: 4 (lower is better) Translates to: TSVTVTTEGLSHRMESLGPEHSF*SWKVAG Trigger: CCCGGCTACCTTCCAGCTCCAAAAGCTGTGCTCGGG...ACCAAGACTCTCCATTCGATGGGAGAGACCTTCAGTAGTAACAGTGACACTGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174815.3 |
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| CDS-3UTR CCA 90 bp | AATATCTGTGCCCTGAGGGAGACCAGTGTCACTGTTACTACTGAAGGTCTCTCCCACAGCTTTTGGAGCTaGAAGGTAGCCGGGGCTCAT | + |
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Preference number: 4 (lower is better) Translates to: NICALRETSVTVTTEGLSHSFWS*KVAGAH Trigger: ATGAGCCCCGGCTACCTTCCAGCTCCAAAAGCTGTG...GGAGAGACCTTCAGTAGTAACAGTGACACTGGTCTCCCTCAGGGCACAGATATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174815.3 |
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| CDS-3UTR TCA 90 bp | GAAGTGTTCATAGCTTTCTTGGGAGGTGAGTTATCAGCGGTAGTTCTCAGGCCCCAGGATCTTGGATGCTaGAAGGAGAATGGAGTCAAC | + |
|
Preference number: 4 (lower is better) Translates to: EVFIAFLGGELSAVVLRPQDLGC*KENGVN Trigger: GTTGACTCCATTCTCCTTTCAGCATCCAAGATCCTG...GGGCCTGAGAACTACCGCTGATAACTCACCTCCCAAGAAAGCTATGAACACTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174815.3 |
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| 3UTR CAA 72 bp | TTACTACTGAAGGTCTCTCCCATCGAATGGAGAGTCTaGGTGGAAGGTATTTCTTCTTGTGTCTCGTTAGGC | + |
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Preference number: 4 (lower is better) Translates to: LLLKVSPIEWRV*VEGISSCVSLG Trigger: GCCTAACGAGACACAAGAAGAAATACCTTCCACCAAGACTCTCCATTCGATGGGAGAGACCTTCAGTAGTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174815.3 |
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| 3UTR CAA 72 bp | CATCGAATGGAGAGTCTTGGTGGAAGGTATTTCTTCTaGTGTCTCGTTAGGCAAATCCTTTTCAGGATGCAT | + |
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Preference number: 4 (lower is better) Translates to: HRMESLGGRYFF*CLVRQILFRMH Trigger: ATGCATCCTGAAAAGGATTTGCCTAACGAGACACAAGAAGAAATACCTTCCACCAAGACTCTCCATTCGATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174815.3 |
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| CDS CCA 90 bp | AAGGAGAATGGAGTCAACTTCATCTTCTTCCGCGAGGTGCTTCTCTaGAACAGACCCGAGCACAGCTTTTGGAGCTGGAAGGTAGCCGGG | + |
|
Preference number: 5 (lower is better) Translates to: KENGVNFIFFREVLL*NRPEHSFWSWKVAG Trigger: CCCGGCTACCTTCCAGCTCCAAAAGCTGTGCTCGGGTCTGTTCCAGAGAAGCACCTCGCGGAAGAAGATGAAGTTGACTCCATTCTCCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095326.10 ENSMUST00000174815.3 |
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| CDS CCA 90 bp | GGTAGGCTTGAATATCCACGAGCTTCCTTTCCAACTTCTGTCTGGTaGAAGTGGACTCCTGCAGTGTCGCCTCCAGACTCAGCTTCTCCG | + |
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Preference number: 5 (lower is better) Translates to: GRLEYPRASFPTSVW*KWTPAVSPPDSASP Trigger: CGGAGAAGCTGAGTCTGGAGGCGACACTGCAGGAGTCCACTTCCACCAGACAGAAGTTGGAAAGGAAGCTCGTGGATATTCAAGCCTACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS TCA 90 bp | TGTCGTCTAAGTTTGCACAGAACCCATGCTTTGGGAAAGGGGTGGTaGTGGTGGATTTATCCAGAATCACGGGAGCAGCTTGGGGCACCG | + |
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Preference number: 5 (lower is better) Translates to: CRLSLHRTHALGKGW*WWIYPESREQLGAP Trigger: CGGTGCCCCAAGCTGCTCCCGTGATTCTGGATAAATCCACCATCACCACCCCTTTCCCAAAGCATGGGTTCTGTGCAAACTTAGACGACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS GCA 90 bp | GATGCTGAAAGGAGAATGGAGTCAACTTCATCTTCTTCCGCGAGGTaGTTCTCTGGAACAGACCCGAGCACAGCTTTTGGAGCTGGAAGG | + |
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Preference number: 5 (lower is better) Translates to: DAERRMESTSSSSAR*FSGTDPSTAFGAGR Trigger: CCTTCCAGCTCCAAAAGCTGTGCTCGGGTCTGTTCCAGAGAAGCACCTCGCGGAAGAAGATGAAGTTGACTCCATTCTCCTTTCAGCATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095326.10 ENSMUST00000174815.3 |
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| CDS GCA 90 bp | AGCGACTCCTGCTCCGCTTTAATCAGTCTCTCCTTTTCTTTCAGCTaGAGGATCTCCAGCTTGCTCTCTTTCAGGTCACTCTCGAGCGTG | + |
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Preference number: 5 (lower is better) Translates to: SDSCSALISLSFSFS*RISSLLSFRSLSSV Trigger: CACGCTCGAGAGTGACCTGAAAGAGAGCAAGCTGGAGATCCTGCAGCTGAAAGAAAAGGAGAGACTGATTAAAGCGGAGCAGGAGTCGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS CCA 90 bp | ACTGGTAGGCTTGAATATCCACGAGCTTCCTTTCCAACTTCTGTCTaGTGGAAGTGGACTCCTGCAGTGTCGCCTCCAGACTCAGCTTCT | + |
|
Preference number: 5 (lower is better) Translates to: TGRLEYPRASFPTSV*WKWTPAVSPPDSAS Trigger: AGAAGCTGAGTCTGGAGGCGACACTGCAGGAGTCCACTTCCACCAGACAGAAGTTGGAAAGGAAGCTCGTGGATATTCAAGCCTACCAGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS TCA 90 bp | CTGGAAAGTGTGGAGTTCACTTGTGAGTGCCAGCTCCTTGTCGTGTaGCTTCTGAAGCTCCTCTTTCATGTGCTTGATCGAGTGGCAGAT | + |
|
Preference number: 5 (lower is better) Translates to: LESVEFTCECQLLVV*LLKLLFHVLDRVAD Trigger: ATCTGCCACTCGATCAAGCACATGAAAGAGGAGCTTCAGAAGTCACACGACAAGGAGCTGGCACTCACAAGTGAACTCCACACTTTCCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS CCA 90 bp | CATTGCCCCCGCTTTCCTTTACCCCCTCAGAGGAATTCAGGATCTTaGATGCTGAAAGGAGAATGGAGTCAACTTCATCTTCTTCCGCGA | + |
|
Preference number: 5 (lower is better) Translates to: HCPRFPLPPQRNSGS*MLKGEWSQLHLLPR Trigger: TCGCGGAAGAAGATGAAGTTGACTCCATTCTCCTTTCAGCATCCAAGATCCTGAATTCCTCTGAGGGGGTAAAGGAAAGCGGGGGCAATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000095326.10 ENSMUST00000174815.3 |
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| CDS CCA 90 bp | TTACCCCCTCAGAGGAATTCAGGATCTTGGATGCTGAAAGGAGAATaGAGTCAACTTCATCTTCTTCCGCGAGGTGCTTCTCTGGAACAG | + |
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Preference number: 5 (lower is better) Translates to: LPPQRNSGSWMLKGE*SQLHLLPRGASLEQ Trigger: CTGTTCCAGAGAAGCACCTCGCGGAAGAAGATGAAGTTGACTCCATTCTCCTTTCAGCATCCAAGATCCTGAATTCCTCTGAGGGGGTAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000095326.10 ENSMUST00000174815.3 |
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| CDS CCA 90 bp | TTCCCTAGGTCCAGGACCGACAGAGTGTACCTTGGAGCTCGGGAGTaGAACTTTAAATCCATAATGTTCTTGCTGGTGATAGGGATGTCT | + |
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Preference number: 5 (lower is better) Translates to: FPRSRTDRVYLGARE*NFKSIMFLLVIGMS Trigger: AGACATCCCTATCACCAGCAAGAACATTATGGATTTAAAGTTCCACTCCCGAGCTCCAAGGTACACTCTGTCGGTCCTGGACCTAGGGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS-3UTR CAA 90 bp | AATATCTGTGCCCTGAGGGAGACCAGTGTCACTGTTACTACTGAAGGTCTCTCCGAGGAATTCAGGATCTaGGATGCTGAAAGGAGAATG | + |
|
Preference number: 5 (lower is better) Translates to: NICALRETSVTVTTEGLSEEFRI*DAERRM Trigger: CATTCTCCTTTCAGCATCCAAGATCCTGAATTCCTC...GGAGAGACCTTCAGTAGTAACAGTGACACTGGTCTCCCTCAGGGCACAGATATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174815.3 |
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| CDS GCA 90 bp | TTTCGTTTTGGAGGACGGCCATGTCACTTTGGGACTTGTGTTCCTTaGTCTTCAGGTGATCTATCGTTTCCAGCATCTGTTGCTTTTCCA | + |
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Preference number: 5 (lower is better) Translates to: FRFGGRPCHFGTCVP*SSGDLSFPASVAFP Trigger: TGGAAAAGCAACAGATGCTGGAAACGATAGATCACCTGAAGAGCAAGGAACACAAGTCCCAAAGTGACATGGCCGTCCTCCAAAACGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS TCA 90 bp | TACATTTCCTACAAAAGTTCACATGCAGTTTTGACACCGTGTCCCTaGGTGGGAGCAGTTTGCTCACTAAGGCCTCTAATTCGGAAATTC | + |
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Preference number: 5 (lower is better) Translates to: YISYKSSHAVLTPCP*VGAVCSLRPLIRKF Trigger: GAATTTCCGAATTAGAGGCCTTAGTGAGCAAACTGCTCCCACTCAGGGACACGGTGTCAAAACTGCATGTGAACTTTTGTAGGAAATGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS CCA 90 bp | CTCGTCTTGAAATATAGGTTGATTTTGATGCGCTGTTGTTCTGACTaGAGACTTTATCACTTAAACTCAAGTAGTCTCGCTGAAGATTCC | + |
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Preference number: 5 (lower is better) Translates to: LVLKYRLILMRCCSD*RLYHLNSSSLAEDS Trigger: GGAATCTTCAGCGAGACTACTTGAGTTTAAGTGATAAAGTCTCCAGTCAGAACAACAGCGCATCAAAATCAACCTATATTTCAAGACGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS CAA 90 bp | GCGACGCTCTGCTTGGGGACGCACTGCTCTGGGATGAACTTGCCTTaGGGTAACTTCTCGTTTTCAAGCGTTGCGGGTCCTTGGCTGACT | + |
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Preference number: 6 (lower is better) Translates to: ATLCLGTHCSGMNLP*GNFSFSSVAGPWLT Trigger: AGTCAGCCAAGGACCCGCAACGCTTGAAAACGAGAAGTTACCCAAAGGCAAGTTCATCCCAGAGCAGTGCGTCCCCAAGCAGAGCGTCGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS GCA 72 bp | CGGCTCATGTTTGTGGTGACCTTGAGTACTCGCGTCTaGCTGGAAAGTGTGGAGTTCACTTGTGAGTGCCAG | + |
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Preference number: 6 (lower is better) Translates to: RLMFVVTLSTRV*LESVEFTCECQ Trigger: CTGGCACTCACAAGTGAACTCCACACTTTCCAGGCAGACGCGAGTACTCAAGGTCACCACAAACATGAGCCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS CCA 72 bp | GGAGTCAACTTCATCTTCTTCCGCGAGGTGCTTCTCTaGAACAGACCCGAGCACAGCTTTTGGAGCTGGAAG | + |
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Preference number: 6 (lower is better) Translates to: GVNFIFFREVLL*NRPEHSFWSWK Trigger: CTTCCAGCTCCAAAAGCTGTGCTCGGGTCTGTTCCAGAGAAGCACCTCGCGGAAGAAGATGAAGTTGACTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095326.10 ENSMUST00000174815.3 |
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| CDS CAA 72 bp | TGCTTGGGGACGCACTGCTCTGGGATGAACTTGCCTTaGGGTAACTTCTCGTTTTCAAGCGTTGCGGGTCCT | + |
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Preference number: 6 (lower is better) Translates to: CLGTHCSGMNLP*GNFSFSSVAGP Trigger: AGGACCCGCAACGCTTGAAAACGAGAAGTTACCCAAAGGCAAGTTCATCCCAGAGCAGTGCGTCCCCAAGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS CAA 72 bp | ACGCTCTGCTTGGGGACGCACTGCTCTGGGATGAACTaGCCTTTGGGTAACTTCTCGTTTTCAAGCGTTGCG | + |
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Preference number: 6 (lower is better) Translates to: TLCLGTHCSGMN*PLGNFSFSSVA Trigger: CGCAACGCTTGAAAACGAGAAGTTACCCAAAGGCAAGTTCATCCCAGAGCAGTGCGTCCCCAAGCAGAGCGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS TCA 72 bp | CTGTTTGAGGACCCTGAGGTAGAAACTGATAGAGGCTaGAACTCTTTGTGGCGCTGGGCTGCTCCGAAGTGT | + |
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Preference number: 6 (lower is better) Translates to: LFEDPEVETDRG*NSLWRWAAPKC Trigger: ACACTTCGGAGCAGCCCAGCGCCACAAAGAGTTTCAGCCTCTATCAGTTTCTACCTCAGGGTCCTCAAACAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS CCA 72 bp | CTCTTTTCTTCAGCCAGAGACTTCAGTTGCTTCTCGTaGGCTTCCACCTTCTGGATCAGGGATTGTGCGGTG | + |
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Preference number: 6 (lower is better) Translates to: LFSSARDFSCFS*ASTFWIRDCAV Trigger: CACCGCACAATCCCTGATCCAGAAGGTGGAAGCCCACGAGAAGCAACTGAAGTCTCTGGCTGAAGAAAAGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS CCA 72 bp | GAATATCCACGAGCTTCCTTTCCAACTTCTGTCTGGTaGAAGTGGACTCCTGCAGTGTCGCCTCCAGACTCA | + |
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Preference number: 6 (lower is better) Translates to: EYPRASFPTSVW*KWTPAVSPPDS Trigger: TGAGTCTGGAGGCGACACTGCAGGAGTCCACTTCCACCAGACAGAAGTTGGAAAGGAAGCTCGTGGATATTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS CCA 72 bp | CTTGAATATCCACGAGCTTCCTTTCCAACTTCTGTCTaGTGGAAGTGGACTCCTGCAGTGTCGCCTCCAGAC | + |
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Preference number: 6 (lower is better) Translates to: LEYPRASFPTSV*WKWTPAVSPPD Trigger: GTCTGGAGGCGACACTGCAGGAGTCCACTTCCACCAGACAGAAGTTGGAAAGGAAGCTCGTGGATATTCAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS GCA 72 bp | AGGAGAATGGAGTCAACTTCATCTTCTTCCGCGAGGTaGTTCTCTGGAACAGACCCGAGCACAGCTTTTGGA | + |
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Preference number: 6 (lower is better) Translates to: RRMESTSSSSAR*FSGTDPSTAFG Trigger: TCCAAAAGCTGTGCTCGGGTCTGTTCCAGAGAAGCACCTCGCGGAAGAAGATGAAGTTGACTCCATTCTCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095326.10 ENSMUST00000174815.3 |
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| CDS GCA 72 bp | TCTCCAGCTTGCTCTCTTTCAGGTCACTCTCGAGCGTaGTCTTGTCTTTCAGGAGCTGGTACGTCTCTTTCT | + |
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Preference number: 6 (lower is better) Translates to: SPACSLSGHSRA*SCLSGAGTSLS Trigger: AGAAAGAGACGTACCAGCTCCTGAAAGACAAGAGCACGCTCGAGAGTGACCTGAAAGAGAGCAAGCTGGAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS GCA 72 bp | GTCTCTCCTTTTCTTTCAGCTGCAGGATCTCCAGCTTaGTCTCTTTCAGGTCACTCTCGAGCGTGCTCTTGT | + |
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Preference number: 6 (lower is better) Translates to: VSPFLSAAGSPA*SLSGHSRACSC Trigger: ACAAGAGCACGCTCGAGAGTGACCTGAAAGAGAGCAAGCTGGAGATCCTGCAGCTGAAAGAAAAGGAGAGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS CAA 72 bp | AGTCTCTCCTTTTCTTTCAGCTGCAGGATCTCCAGCTaGCTCTCTTTCAGGTCACTCTCGAGCGTGCTCTTG | + |
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Preference number: 6 (lower is better) Translates to: SLSFSFSCRISS*LSFRSLSSVLL Trigger: CAAGAGCACGCTCGAGAGTGACCTGAAAGAGAGCAAGCTGGAGATCCTGCAGCTGAAAGAAAAGGAGAGACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS CAA 90 bp | TCATTGCCCCCGCTTTCCTTTACCCCCTCAGAGGAATTCAGGATCTaGGATGCTGAAAGGAGAATGGAGTCAACTTCATCTTCTTCCGCG | + |
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Preference number: 6 (lower is better) Translates to: SLPPLSFTPSEEFRI*DAERRMESTSSSSA Trigger: CGCGGAAGAAGATGAAGTTGACTCCATTCTCCTTTCAGCATCCAAGATCCTGAATTCCTCTGAGGGGGTAAAGGAAAGCGGGGGCAATGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000095326.10 ENSMUST00000174815.3 |
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| CDS TCA 72 bp | AGTTTGCACAGAACCCATGCTTTGGGAAAGGGGTGGTaGTGGTGGATTTATCCAGAATCACGGGAGCAGCTT | + |
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Preference number: 6 (lower is better) Translates to: SLHRTHALGKGW*WWIYPESREQL Trigger: AAGCTGCTCCCGTGATTCTGGATAAATCCACCATCACCACCCCTTTCCCAAAGCATGGGTTCTGTGCAAACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS TCA 72 bp | GTGGAGTTCACTTGTGAGTGCCAGCTCCTTGTCGTGTaGCTTCTGAAGCTCCTCTTTCATGTGCTTGATCGA | + |
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Preference number: 6 (lower is better) Translates to: VEFTCECQLLVV*LLKLLFHVLDR Trigger: TCGATCAAGCACATGAAAGAGGAGCTTCAGAAGTCACACGACAAGGAGCTGGCACTCACAAGTGAACTCCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS GCA 72 bp | TTTCTGGTTCTGACGCACAGCCATATTCTGGTTCATTaGCCCCGCTTTCCTTTACCCCCTCAGAGGAATTCA | + |
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Preference number: 6 (lower is better) Translates to: FLVLTHSHILVH*PRFPLPPQRNS Trigger: TGAATTCCTCTGAGGGGGTAAAGGAAAGCGGGGGCAATGAACCAGAATATGGCTGTGCGTCAGAACCAGAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS GCA 72 bp | GGAGGACGGCCATGTCACTTTGGGACTTGTGTTCCTTaGTCTTCAGGTGATCTATCGTTTCCAGCATCTGTT | + |
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Preference number: 6 (lower is better) Translates to: GGRPCHFGTCVP*SSGDLSFPASV Trigger: AACAGATGCTGGAAACGATAGATCACCTGAAGAGCAAGGAACACAAGTCCCAAAGTGACATGGCCGTCCTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS CAA 90 bp | GGTCCTTGGCTGACTATGAACGCTTGGCCTTCTTTGTCTTTTATTTaGTGTTTCCCTAGGTCCAGGACCGACAGAGTGTACCTTGGAGCT | + |
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Preference number: 6 (lower is better) Translates to: GPWLTMNAWPSLSFI*CFPRSRTDRVYLGA Trigger: AGCTCCAAGGTACACTCTGTCGGTCCTGGACCTAGGGAAACACAAAATAAAAGACAAAGAAGGCCAAGCGTTCATAGTCAGCCAAGGACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS CAA 90 bp | GCTTTAATCAGTCTCTCCTTTTCTTTCAGCTGCAGGATCTCCAGCTaGCTCTCTTTCAGGTCACTCTCGAGCGTGCTCTTGTCTTTCAGG | + |
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Preference number: 6 (lower is better) Translates to: ALISLSFSFSCRISS*LSFRSLSSVLLSFR Trigger: CCTGAAAGACAAGAGCACGCTCGAGAGTGACCTGAAAGAGAGCAAGCTGGAGATCCTGCAGCTGAAAGAAAAGGAGAGACTGATTAAAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS CAA 72 bp | TGCAGTTTTGACACCGTGTCCCTGAGTGGGAGCAGTTaGCTCACTAAGGCCTCTAATTCGGAAATTCTCTTC | + |
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Preference number: 6 (lower is better) Translates to: CSFDTVSLSGSS*LTKASNSEILF Trigger: GAAGAGAATTTCCGAATTAGAGGCCTTAGTGAGCAAACTGCTCCCACTCAGGGACACGGTGTCAAAACTGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS CCA 72 bp | CAGAGGAATTCAGGATCTTGGATGCTGAAAGGAGAATaGAGTCAACTTCATCTTCTTCCGCGAGGTGCTTCT | + |
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Preference number: 6 (lower is better) Translates to: QRNSGSWMLKGE*SQLHLLPRGAS Trigger: AGAAGCACCTCGCGGAAGAAGATGAAGTTGACTCCATTCTCCTTTCAGCATCCAAGATCCTGAATTCCTCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095326.10 ENSMUST00000174815.3 |
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| CDS CCA 72 bp | TCCAGGACCGACAGAGTGTACCTTGGAGCTCGGGAGTaGAACTTTAAATCCATAATGTTCTTGCTGGTGATA | + |
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Preference number: 6 (lower is better) Translates to: SRTDRVYLGARE*NFKSIMFLLVI Trigger: TATCACCAGCAAGAACATTATGGATTTAAAGTTCCACTCCCGAGCTCCAAGGTACACTCTGTCGGTCCTGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS TCA 72 bp | TACAAAAGTTCACATGCAGTTTTGACACCGTGTCCCTaGGTGGGAGCAGTTTGCTCACTAAGGCCTCTAATT | + |
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Preference number: 6 (lower is better) Translates to: YKSSHAVLTPCP*VGAVCSLRPLI Trigger: AATTAGAGGCCTTAGTGAGCAAACTGCTCCCACTCAGGGACACGGTGTCAAAACTGCATGTGAACTTTTGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS TCA 72 bp | TGTTTTTGTAGATGCTTGTCTCCGACTTTGCACTCTTaGTTTCTTTCAGGAACTTCTCCTCCGCGGCTGACT | + |
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Preference number: 6 (lower is better) Translates to: CFCRCLSPTLHS*FLSGTSPPRLT Trigger: AGTCAGCCGCGGAGGAGAAGTTCCTGAAAGAAATCAAGAGTGCAAAGTCGGAGACAAGCATCTACAAAAACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS GCA 72 bp | GGCCAAGTTGTTTTTGTAGATGCTTGTCTCCGACTTTaGACTCTTGATTTCTTTCAGGAACTTCTCCTCCGC | + |
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Preference number: 6 (lower is better) Translates to: GQVVFVDACLRL*TLDFFQELLLR Trigger: GCGGAGGAGAAGTTCCTGAAAGAAATCAAGAGTGCAAAGTCGGAGACAAGCATCTACAAAAACAACTTGGCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS CAA 72 bp | TCTACTGTTTTCGTTTTGGAGGACGGCCATGTCACTTaGGGACTTGTGTTCCTTGCTCTTCAGGTGATCTAT | + |
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Preference number: 6 (lower is better) Translates to: STVFVLEDGHVT*GLVFLALQVIY Trigger: ATAGATCACCTGAAGAGCAAGGAACACAAGTCCCAAAGTGACATGGCCGTCCTCCAAAACGAAAACAGTAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS CAA 90 bp | TATGTTCATTCTACTGTTTTCGTTTTGGAGGACGGCCATGTCACTTaGGGACTTGTGTTCCTTGCTCTTCAGGTGATCTATCGTTTCCAG | + |
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Preference number: 6 (lower is better) Translates to: YVHSTVFVLEDGHVT*GLVFLALQVIYRFQ Trigger: CTGGAAACGATAGATCACCTGAAGAGCAAGGAACACAAGTCCCAAAGTGACATGGCCGTCCTCCAAAACGAAAACAGTAGAATGAACATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS TCA 72 bp | ATGTCACTTTGGGACTTGTGTTCCTTGCTCTTCAGGTaGTCTATCGTTTCCAGCATCTGTTGCTTTTCCAGA | + |
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Preference number: 6 (lower is better) Translates to: MSLWDLCSLLFR*SIVSSICCFSR Trigger: TCTGGAAAAGCAACAGATGCTGGAAACGATAGATCACCTGAAGAGCAAGGAACACAAGTCCCAAAGTGACAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS CCA 72 bp | ACATATCTTGGATGGAAGCCGTTGATACAGTTTATGTaGTATTCCTTTCAAGTCAGAAGCCACAGGCCGATT | + |
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Preference number: 6 (lower is better) Translates to: TYLGWKPLIQFM*YSFQVRSHRPI Trigger: AATCGGCCTGTGGCTTCTGACTTGAAAGGAATACCACATAAACTGTATCAACGGCTTCCATCCAAGATATGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS CCA 72 bp | AAATATAGGTTGATTTTGATGCGCTGTTGTTCTGACTaGAGACTTTATCACTTAAACTCAAGTAGTCTCGCT | + |
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Preference number: 6 (lower is better) Translates to: KYRLILMRCCSD*RLYHLNSSSLA Trigger: AGCGAGACTACTTGAGTTTAAGTGATAAAGTCTCCAGTCAGAACAACAGCGCATCAAAATCAACCTATATTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS CAA 72 bp | AGTAGAGTTTTTCTCGTCTTGAAATATAGGTTGATTTaGATGCGCTGTTGTTCTGACTGGAGACTTTATCAC | + |
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Preference number: 6 (lower is better) Translates to: SRVFLVLKYRLI*MRCCSDWRLYH Trigger: GTGATAAAGTCTCCAGTCAGAACAACAGCGCATCAAAATCAACCTATATTTCAAGACGAGAAAAACTCTACT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS CAA 72 bp | TATCGAAGTAGAGTTTTTCTCGTCTTGAAATATAGGTaGATTTTGATGCGCTGTTGTTCTGACTGGAGACTT | + |
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Preference number: 6 (lower is better) Translates to: YRSRVFLVLKYR*ILMRCCSDWRL Trigger: AAGTCTCCAGTCAGAACAACAGCGCATCAAAATCAACCTATATTTCAAGACGAGAAAAACTCTACTTCGATA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS CAA 72 bp | AGGCATCGTAGTTATCGAAGTAGAGTTTTTCTCGTCTaGAAATATAGGTTGATTTTGATGCGCTGTTGTTCT | + |
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Preference number: 6 (lower is better) Translates to: RHRSYRSRVFLV*KYRLILMRCCS Trigger: AGAACAACAGCGCATCAAAATCAACCTATATTTCAAGACGAGAAAAACTCTACTTCGATAACTACGATGCCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS CAA 90 bp | CATCGTAGTTATCGAAGTAGAGTTTTTCTCGTCTTGAAATATAGGTaGATTTTGATGCGCTGTTGTTCTGACTGGAGACTTTATCACTTA | + |
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Preference number: 6 (lower is better) Translates to: HRSYRSRVFLVLKYR*ILMRCCSDWRLYHL Trigger: TAAGTGATAAAGTCTCCAGTCAGAACAACAGCGCATCAAAATCAACCTATATTTCAAGACGAGAAAAACTCTACTTCGATAACTACGATG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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| CDS CAA 90 bp | AGTTATCGAAGTAGAGTTTTTCTCGTCTTGAAATATAGGTTGATTTaGATGCGCTGTTGTTCTGACTGGAGACTTTATCACTTAAACTCA | + |
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Preference number: 6 (lower is better) Translates to: SYRSRVFLVLKYRLI*MRCCSDWRLYHLNS Trigger: TGAGTTTAAGTGATAAAGTCTCCAGTCAGAACAACAGCGCATCAAAATCAACCTATATTTCAAGACGAGAAAAACTCTACTTCGATAACT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095326.10 |
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