Pregenerated sensors for CCDC107 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028461Ensembl transcript IDs: ENSMUST00000030181.12, ENSMUST00000107922.3
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CCTCCCAGGAAGGAGCTAGGTTCCGTGTTTCTGGGCTCCAGGTTATaGGCTCTTCCCAGGCCTGACTGTTTCCAGCTTCTTGGTCTTCTT | + |
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Preference number: 5 (lower is better) Translates to: PPRKELGSVFLGSRL*ALPRPDCFQLLGLL Trigger: AAGAAGACCAAGAAGCTGGAAACAGTCAGGCCTGGGAAGAGCCCATAACCTGGAGCCCAGAAACACGGAACCTAGCTCCTTCCTGGGAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030181.12 ENSMUST00000107922.3 |
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| CDS TCA 90 bp | AGGTTCCGTGTTTCTGGGCTCCAGGTTATGGGCTCTTCCCAGGCCTaGCTGTTTCCAGCTTCTTGGTCTTCTTTCCCCAGGTCCTCAGTA | + |
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Preference number: 5 (lower is better) Translates to: RFRVSGLQVMGSSQA*LFPASWSSFPRSSV Trigger: TACTGAGGACCTGGGGAAAGAAGACCAAGAAGCTGGAAACAGTCAGGCCTGGGAAGAGCCCATAACCTGGAGCCCAGAAACACGGAACCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030181.12 ENSMUST00000107922.3 |
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| CDS CCA 90 bp | GGTATGCTGGCCTCTGGTTCTGGAACTTCCACTCCTGTGCCAGGCTaGCAGTCTTGTAGAAGGTGGTGGATGGTCTTTAGTTTTGTGTCT | + |
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Preference number: 5 (lower is better) Translates to: GMLASGSGTSTPVPG*QSCRRWWMVFSFVS Trigger: AGACACAAAACTAAAGACCATCCACCACCTTCTACAAGACTGCCAGCCTGGCACAGGAGTGGAAGTTCCAGAACCAGAGGCCAGCATACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030181.12 |
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| CDS CCA 90 bp | GGAACTTCCACTCCTGTGCCAGGCTGGCAGTCTTGTAGAAGGTGGTaGATGGTCTTTAGTTTTGTGTCTAGAAGTTCCCTCTGGGTTCCA | + |
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Preference number: 5 (lower is better) Translates to: GTSTPVPGWQSCRRW*MVFSFVSRSSLWVP Trigger: TGGAACCCAGAGGGAACTTCTAGACACAAAACTAAAGACCATCCACCACCTTCTACAAGACTGCCAGCCTGGCACAGGAGTGGAAGTTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030181.12 ENSMUST00000107922.3 |
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| CDS GCA 90 bp | AGAAACCTCCCAACCTTTTACCTGGTTCTGGAACTTCCACTCCTGTaGCAGGCTGGCAGTCTTGTAGAAGGTGGTGGATGGTCTTTAGTT | + |
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Preference number: 5 (lower is better) Translates to: RNLPTFYLVLELPLL*QAGSLVEGGGWSLV Trigger: AACTAAAGACCATCCACCACCTTCTACAAGACTGCCAGCCTGGCACAGGAGTGGAAGTTCCAGAACCAGGTAAAAGGTTGGGAGGTTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107922.3 |
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| CDS CCA 90 bp | CCCAACCTTTTACCTGGTTCTGGAACTTCCACTCCTGTGCCAGGCTaGCAGTCTTGTAGAAGGTGGTGGATGGTCTTTAGTTTTGTGTCT | + |
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Preference number: 5 (lower is better) Translates to: PNLLPGSGTSTPVPG*QSCRRWWMVFSFVS Trigger: AGACACAAAACTAAAGACCATCCACCACCTTCTACAAGACTGCCAGCCTGGCACAGGAGTGGAAGTTCCAGAACCAGGTAAAAGGTTGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107922.3 |
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| CDS TCA 72 bp | GTGGCGGCTGCCGCCGAGGTTCGGTGGTTCCCGGACTaGCCTGGGAGCCCCGTTCTGGGTGTGCCCCCAGAT | + |
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Preference number: 6 (lower is better) Translates to: VAAAAEVRWFPD*PGSPVLGVPPD Trigger: ATCTGGGGGCACACCCAGAACGGGGCTCCCAGGTCAGTCCGGGAACCACCGAACCTCGGCGGCAGCCGCCAC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030181.12 ENSMUST00000107922.3 |
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| CDS GCA 72 bp | AGGGGATCCAGCTGTGTCATCAGGTGGTTCAGGTGCTaGTCCGTCTGGGCCAGCTGTTGTGTCAGCTGCACC | + |
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Preference number: 6 (lower is better) Translates to: RGSSCVIRWFRC*SVWASCCVSCT Trigger: GGTGCAGCTGACACAACAGCTGGCCCAGACGGAGCAGCACCTGAACCACCTGATGACACAGCTGGATCCCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030181.12 ENSMUST00000107922.3 |
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| CDS GCA 72 bp | AGGTGCTGCTCCGTCTGGGCCAGCTGTTGTGTCAGCTaGACCAGCTGTTGCTCTGACTGCGAGGATTTCTTC | + |
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Preference number: 6 (lower is better) Translates to: RCCSVWASCCVS*TSCCSDCEDFF Trigger: GAAGAAATCCTCGCAGTCAGAGCAACAGCTGGTGCAGCTGACACAACAGCTGGCCCAGACGGAGCAGCACCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030181.12 ENSMUST00000107922.3 |
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| CDS GCA 72 bp | AAAAGGGGATCCAGCTGTGTCATCAGGTGGTTCAGGTaGTGCTCCGTCTGGGCCAGCTGTTGTGTCAGCTGC | + |
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Preference number: 6 (lower is better) Translates to: KRGSSCVIRWFR*CSVWASCCVSC Trigger: GCAGCTGACACAACAGCTGGCCCAGACGGAGCAGCACCTGAACCACCTGATGACACAGCTGGATCCCCTTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030181.12 ENSMUST00000107922.3 |
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| CDS TCA 72 bp | GTTTCTGGGCTCCAGGTTATGGGCTCTTCCCAGGCCTaGCTGTTTCCAGCTTCTTGGTCTTCTTTCCCCAGG | + |
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Preference number: 6 (lower is better) Translates to: VSGLQVMGSSQA*LFPASWSSFPR Trigger: CCTGGGGAAAGAAGACCAAGAAGCTGGAAACAGTCAGGCCTGGGAAGAGCCCATAACCTGGAGCCCAGAAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030181.12 ENSMUST00000107922.3 |
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| CDS CCA 72 bp | GCCTCTGGTTCTGGAACTTCCACTCCTGTGCCAGGCTaGCAGTCTTGTAGAAGGTGGTGGATGGTCTTTAGT | + |
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Preference number: 6 (lower is better) Translates to: ASGSGTSTPVPG*QSCRRWWMVFS Trigger: ACTAAAGACCATCCACCACCTTCTACAAGACTGCCAGCCTGGCACAGGAGTGGAAGTTCCAGAACCAGAGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030181.12 |
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| CDS CCA 72 bp | AAGGAGCTAGGTTCCGTGTTTCTGGGCTCCAGGTTATaGGCTCTTCCCAGGCCTGACTGTTTCCAGCTTCTT | + |
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Preference number: 6 (lower is better) Translates to: KELGSVFLGSRL*ALPRPDCFQLL Trigger: AAGAAGCTGGAAACAGTCAGGCCTGGGAAGAGCCCATAACCTGGAGCCCAGAAACACGGAACCTAGCTCCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030181.12 ENSMUST00000107922.3 |
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| CDS CCA 72 bp | CCAGCCATAGAAACCTCCCAACCTTTTACCTGGTTCTaGAACTTCCACTCCTGTGCCAGGCTGGCAGTCTTG | + |
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Preference number: 6 (lower is better) Translates to: PAIETSQPFTWF*NFHSCARLAVL Trigger: CAAGACTGCCAGCCTGGCACAGGAGTGGAAGTTCCAGAACCAGGTAAAAGGTTGGGAGGTTTCTATGGCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107922.3 |
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| CDS CCA 72 bp | CTGTGCCAGGCTGGCAGTCTTGTAGAAGGTGGTGGATaGTCTTTAGTTTTGTGTCTAGAAGTTCCCTCTGGG | + |
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Preference number: 6 (lower is better) Translates to: LCQAGSLVEGGG*SLVLCLEVPSG Trigger: CCCAGAGGGAACTTCTAGACACAAAACTAAAGACCATCCACCACCTTCTACAAGACTGCCAGCCTGGCACAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030181.12 ENSMUST00000107922.3 |
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| CDS CCA 72 bp | TTACCTGGTTCTGGAACTTCCACTCCTGTGCCAGGCTaGCAGTCTTGTAGAAGGTGGTGGATGGTCTTTAGT | + |
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Preference number: 6 (lower is better) Translates to: LPGSGTSTPVPG*QSCRRWWMVFS Trigger: ACTAAAGACCATCCACCACCTTCTACAAGACTGCCAGCCTGGCACAGGAGTGGAAGTTCCAGAACCAGGTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107922.3 |
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| CDS CAA 90 bp | TGCCAGGCTGGCAGTCTTGTAGAAGGTGGTGGATGGTCTTTAGTTTaGTGTCTAGAAGTTCCCTCTGGGTTCCAACCAAAGTCGTCACCT | + |
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Preference number: 6 (lower is better) Translates to: CQAGSLVEGGGWSLV*CLEVPSGFQPKSSP Trigger: AGGTGACGACTTTGGTTGGAACCCAGAGGGAACTTCTAGACACAAAACTAAAGACCATCCACCACCTTCTACAAGACTGCCAGCCTGGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030181.12 ENSMUST00000107922.3 |
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| CDS CCA 72 bp | ACTCCTGTGCCAGGCTGGCAGTCTTGTAGAAGGTGGTaGATGGTCTTTAGTTTTGTGTCTAGAAGTTCCCTC | + |
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Preference number: 6 (lower is better) Translates to: TPVPGWQSCRRW*MVFSFVSRSSL Trigger: GAGGGAACTTCTAGACACAAAACTAAAGACCATCCACCACCTTCTACAAGACTGCCAGCCTGGCACAGGAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030181.12 ENSMUST00000107922.3 |
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| CDS CCA 72 bp | TCCACTCCTGTGCCAGGCTGGCAGTCTTGTAGAAGGTaGTGGATGGTCTTTAGTTTTGTGTCTAGAAGTTCC | + |
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Preference number: 6 (lower is better) Translates to: STPVPGWQSCRR*WMVFSFVSRSS Trigger: GGAACTTCTAGACACAAAACTAAAGACCATCCACCACCTTCTACAAGACTGCCAGCCTGGCACAGGAGTGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030181.12 ENSMUST00000107922.3 |
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| CDS CAA 72 bp | GGCAGTCTTGTAGAAGGTGGTGGATGGTCTTTAGTTTaGTGTCTAGAAGTTCCCTCTGGGTTCCAACCAAAG | + |
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Preference number: 6 (lower is better) Translates to: GSLVEGGGWSLV*CLEVPSGFQPK Trigger: CTTTGGTTGGAACCCAGAGGGAACTTCTAGACACAAAACTAAAGACCATCCACCACCTTCTACAAGACTGCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030181.12 ENSMUST00000107922.3 |
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