Pregenerated sensors for CCDC103 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020930Ensembl transcript IDs: ENSMUST00000021307.10, ENSMUST00000159834.2
Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCCCAGCACTGCTGTCCGGTCGCTCAGCCTCGCGTGCTCAGCCAATaGCACCAGCAGCTCCCCAAGAAGTCCAAAGCCCACATCCATCTG | + |
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Preference number: 1 (lower is better) Translates to: PQHCCPVAQPRVLSQ*HQQLPKKSKAHIHL Trigger: CAGATGGATGTGGGCTTTGGACTTCTTGGGGAGCTGCTGGTGGCATTGGCTGAGCACGCGAGGCTGAGCGACCGGACAGCAGTGCTGGGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159834.2 |
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| 3UTR GCA 90 bp | CTGTGCAGAATCCCCAGCACTGCTGTCCGGTCGCTCAGCCTCGCGTaGTCAGCCAATGCCACCAGCAGCTCCCCAAGAAGTCCAAAGCCC | + |
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Preference number: 1 (lower is better) Translates to: LCRIPSTAVRSLSLA*SANATSSSPRSPKP Trigger: GGGCTTTGGACTTCTTGGGGAGCTGCTGGTGGCATTGGCTGAGCACGCGAGGCTGAGCGACCGGACAGCAGTGCTGGGGATTCTGCACAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159834.2 |
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| 3UTR GCA 90 bp | GTTGAACCGCCCAGTGTTAGCCAGGCTGTGCAGAATCCCCAGCACTaGTGTCCGGTCGCTCAGCCTCGCGTGCTCAGCCAATGCCACCAG | + |
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Preference number: 1 (lower is better) Translates to: VEPPSVSQAVQNPQH*CPVAQPRVLSQCHQ Trigger: CTGGTGGCATTGGCTGAGCACGCGAGGCTGAGCGACCGGACAGCAGTGCTGGGGATTCTGCACAGCCTGGCTAACACTGGGCGGTTCAAC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159834.2 |
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| 3UTR GCA 90 bp | AGCAGGCTCAGGTTCAAGTTGAACCGCCCAGTGTTAGCCAGGCTGTaGAGAATCCCCAGCACTGCTGTCCGGTCGCTCAGCCTCGCGTGC | + |
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Preference number: 1 (lower is better) Translates to: SRLRFKLNRPVLARL*RIPSTAVRSLSLAC Trigger: GCACGCGAGGCTGAGCGACCGGACAGCAGTGCTGGGGATTCTGCACAGCCTGGCTAACACTGGGCGGTTCAACTTGAACCTGAGCCTGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159834.2 |
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| 3UTR TCA 90 bp | GGAGCCCTTCTTCTCCCTGTAGCCCAGCAGATGGCTCCTCCACAGTaGGGCCCTCCTGCATGGGTCTGGTGGTGCTCATGGCTTGCAACT | + |
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Preference number: 1 (lower is better) Translates to: GALLLPVAQQMAPPQ*GPPAWVWWCSWLAT Trigger: AGTTGCAAGCCATGAGCACCACCAGACCCATGCAGGAGGGCCTCACTGTGGAGGAGCCATCTGCTGGGCTACAGGGAGAAGAAGGGCTCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159834.2 |
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| 3UTR CCA 90 bp | GTCTGGTTAGGAGTTATGATCAGAGCTTATCTGACACTAGGGGCGTaGCAGGCAGCAAAACACTCTCAGCCAGCTGAGCCACTGGCTATC | + |
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Preference number: 1 (lower is better) Translates to: VWLGVMIRAYLTLGA*QAAKHSQPAEPLAI Trigger: GATAGCCAGTGGCTCAGCTGGCTGAGAGTGTTTTGCTGCCTGCCACGCCCCTAGTGTCAGATAAGCTCTGATCATAACTCCTAACCAGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021307.10 |
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| 3UTR CCA 90 bp | CTTCTGAGACCACTGAGGAATGCTGAGGGCAAACAGTCCTATCAATaGACTCCATACAGTTCTAGCAGCTCCTGTAGGAGCCCTTCTTCT | + |
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Preference number: 1 (lower is better) Translates to: LLRPLRNAEGKQSYQ*TPYSSSSSCRSPSS Trigger: AGAAGAAGGGCTCCTACAGGAGCTGCTAGAACTGTATGGAGTCCATTGATAGGACTGTTTGCCCTCAGCATTCCTCAGTGGTCTCAGAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159834.2 |
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| 3UTR GCA 90 bp | AAGGGAAGCGCTGTGAATTTCTCACAACCATTCTTTCAACAACTCTaGAGAAGGCACAAAGTAAACACCACAGGATTCCTTCCAAGGGGC | + |
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Preference number: 1 (lower is better) Translates to: KGSAVNFSQPFFQQL*RRHKVNTTGFLPRG Trigger: GCCCCTTGGAAGGAATCCTGTGGTGTTTACTTTGTGCCTTCTGCAGAGTTGTTGAAAGAATGGTTGTGAGAAATTCACAGCGCTTCCCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021307.10 |
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| 3UTR CCA 90 bp | ACACTTTCAGAGGCTCTAACACCTAGTTCTGGCCTCCTCAGGTACTaGGTACCCACATGGTGGACATACATACATACATGTAGGAAAAAC | + |
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Preference number: 1 (lower is better) Translates to: TLSEALTPSSGLLRY*VPTWWTYIHTCRKN Trigger: GTTTTTCCTACATGTATGTATGTATGTCCACCATGTGGGTACCCAGTACCTGAGGAGGCCAGAACTAGGTGTTAGAGCCTCTGAAAGTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021307.10 ENSMUST00000159834.2 |
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| 3UTR CCA 90 bp | TCTCAGATGAAGGGGCGTTTGCTTCTTGATGAGCTGTTCATTCACTaGCTCTGGGTTATAAATAGTCTGGTTAGGAGTTATGATCAGAGC | + |
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Preference number: 1 (lower is better) Translates to: SQMKGRLLLDELFIH*LWVINSLVRSYDQS Trigger: GCTCTGATCATAACTCCTAACCAGACTATTTATAACCCAGAGCCAGTGAATGAACAGCTCATCAAGAAGCAAACGCCCCTTCATCTGAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021307.10 |
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| 3UTR-3UTR CCA 90 bp | TGTAGCCCAGCAGATGGCTCCTCCACAGTGAGGCCCTCCTGCATGGGTCTGGTGGCAGAGGTGGTGGGCTaGAAGGGTGATTTCTCCTGC | + |
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Preference number: 2 (lower is better) Translates to: CSPADGSSTVRPSCMGLVAEVVG*KGDFSC Trigger: GCAGGAGAAATCACCCTTCCAGCCCACCACCTCTGC...CACCAGACCCATGCAGGAGGGCCTCACTGTGGAGGAGCCATCTGCTGGGCTACA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159834.2 |
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| 3UTR-3UTR GCA 90 bp | TCTCCCTGTAGCCCAGCAGATGGCTCCTCCACAGTGAGGCCCTCCTGCATGGGTGTGTTAGCCAGGCTGTaGAGAATCCCCAGCACTGCT | + |
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Preference number: 2 (lower is better) Translates to: SPCSPADGSSTVRPSCMGVLARL*RIPSTA Trigger: AGCAGTGCTGGGGATTCTGCACAGCCTGGCTAACAC...ACCCATGCAGGAGGGCCTCACTGTGGAGGAGCCATCTGCTGGGCTACAGGGAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159834.2 |
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| 3UTR CAA 90 bp | TGGCAGCTCTCTCGCTCTGCATGGCTCAGCAGGCTCAGGTTCAAGTaGAACCGCCCAGTGTTAGCCAGGCTGTGCAGAATCCCCAGCACT | + |
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Preference number: 2 (lower is better) Translates to: WQLSRSAWLSRLRFK*NRPVLARLCRIPST Trigger: AGTGCTGGGGATTCTGCACAGCCTGGCTAACACTGGGCGGTTCAACTTGAACCTGAGCCTGCTGAGCCATGCAGAGCGAGAGAGCTGCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159834.2 |
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| 3UTR-3UTR CCA 90 bp | ACTTCTGAAACAGGCGCTGGCAGCTCTCTCGCTCTGCATGGCTCAGCAGGCTCAGGCCTCCTCAGGTACTaGGTACCCACATGGTGGACA | + |
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Preference number: 2 (lower is better) Translates to: TSETGAGSSLALHGSAGSGLLRY*VPTWWT Trigger: TGTCCACCATGTGGGTACCCAGTACCTGAGGAGGCC...TGAGCCTGCTGAGCCATGCAGAGCGAGAGAGCTGCCAGCGCCTGTTTCAGAAGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159834.2 |
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| 3UTR-3UTR CCA 90 bp | ACTTCTGAAACAGGCGCTGGCAGCTCTCTCGCTCTGCATGGCTCAGCAGGCTCAATTCTGCAGAGGTGGTaGGCTGGAAGGGTGATTTCT | + |
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Preference number: 2 (lower is better) Translates to: TSETGAGSSLALHGSAGSILQRW*AGRVIS Trigger: AGAAATCACCCTTCCAGCCCACCACCTCTGCAGAAT...TGAGCCTGCTGAGCCATGCAGAGCGAGAGAGCTGCCAGCGCCTGTTTCAGAAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159834.2 |
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| 3UTR-3UTR TCA 90 bp | GTAATTACACTTTCAGAGGCTCTAACACCTAGTTCTGGCCTCCTCAGGTACTGGATGGCTCCTCCACAGTaGGGCCCTCCTGCATGGGTC | + |
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Preference number: 2 (lower is better) Translates to: VITLSEALTPSSGLLRYWMAPPQ*GPPAWV Trigger: GACCCATGCAGGAGGGCCTCACTGTGGAGGAGCCAT...CCAGTACCTGAGGAGGCCAGAACTAGGTGTTAGAGCCTCTGAAAGTGTAATTAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159834.2 |
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| 3UTR-3UTR CCA 90 bp | GTAATTACACTTTCAGAGGCTCTAACACCTAGTTCTGGCCTCCTCAGGTACTGGGGCCTCCTCAGGTACTaGGTACCCACATGGTGGACA | + |
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Preference number: 2 (lower is better) Translates to: VITLSEALTPSSGLLRYWGLLRY*VPTWWT Trigger: TGTCCACCATGTGGGTACCCAGTACCTGAGGAGGCC...CCAGTACCTGAGGAGGCCAGAACTAGGTGTTAGAGCCTCTGAAAGTGTAATTAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021307.10 ENSMUST00000159834.2 |
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| 3UTR-3UTR CCA 90 bp | TCGCTCTGCATGGCTCAGCAGGCTCAGGTTCAAGTTGAACCGCCCAGTGTTAGCTACTGGGTACCCACATaGTGGACATACATACATACA | + |
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Preference number: 2 (lower is better) Translates to: SLCMAQQAQVQVEPPSVSYWVPT*WTYIHT Trigger: TGTATGTATGTATGTCCACCATGTGGGTACCCAGTA...GCTAACACTGGGCGGTTCAACTTGAACCTGAGCCTGCTGAGCCATGCAGAGCGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159834.2 |
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| 3UTR CAA 90 bp | TCCCTGGGAAGCGGGGGAAATTGTGCATCTCAGATGAAGGGGCGTTaGCTTCTTGATGAGCTGTTCATTCACTGGCTCTGGGTTATAAAT | + |
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Preference number: 2 (lower is better) Translates to: SLGSGGNCASQMKGR*LLDELFIHWLWVIN Trigger: ATTTATAACCCAGAGCCAGTGAATGAACAGCTCATCAAGAAGCAAACGCCCCTTCATCTGAGATGCACAATTTCCCCCGCTTCCCAGGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021307.10 |
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| 3UTR-3UTR CCA 90 bp | GACCTGGGTTTGATTTCAGCACCCACAAGGCAACTCACAACCATTTGTAATTACAAGCCCACATCCATCTaGAAGAGGTGGCCCAGCTTG | + |
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Preference number: 2 (lower is better) Translates to: DLGLISAPTRQLTTICNYKPTSI*KRWPSL Trigger: CAAGCTGGGCCACCTCTTCCAGATGGATGTGGGCTT...GTAATTACAAATGGTTGTGAGTTGCCTTGTGGGTGCTGAAATCAAACCCAGGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159834.2 |
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| 3UTR-3UTR GCA 90 bp | GTAATTACACTTTCAGAGGCTCTAACACCTAGTTCTGGCCTCCTCAGGTACTGGATCACGGTAAAATTCTaGAGAGGTGGTGGGCTGGAA | + |
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Preference number: 2 (lower is better) Translates to: VITLSEALTPSSGLLRYWITVKF*RGGGLE Trigger: TTCCAGCCCACCACCTCTGCAGAATTTTACCGTGAT...CCAGTACCTGAGGAGGCCAGAACTAGGTGTTAGAGCCTCTGAAAGTGTAATTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159834.2 |
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| 3UTR-3UTR CCA 90 bp | CTGCCCTGCCCTGCCCAAAAGAACATCCTTTCATCCATCCGAGAGATAATGGGATACTGGGTACCCACATaGTGGACATACATACATACA | + |
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Preference number: 2 (lower is better) Translates to: LPCPAQKNILSSIREIMGYWVPT*WTYIHT Trigger: TGTATGTATGTATGTCCACCATGTGGGTACCCAGTA...TCCCATTATCTCTCGGATGGATGAAAGGATGTTCTTTTGGGCAGGGCAGGGCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021307.10 |
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| 3UTR-3UTR GCA 90 bp | CTGCCCTGCCCTGCCCAAAAGAACATCCTTTCATCCATCCGAGAGATAATGGGATTCTTTCAACAACTCTaGAGAAGGCACAAAGTAAAC | + |
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Preference number: 2 (lower is better) Translates to: LPCPAQKNILSSIREIMGFFQQL*RRHKVN Trigger: GTTTACTTTGTGCCTTCTGCAGAGTTGTTGAAAGAA...TCCCATTATCTCTCGGATGGATGAAAGGATGTTCTTTTGGGCAGGGCAGGGCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021307.10 |
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| 3UTR-3UTR CCA 90 bp | GACCTGGGTTTGATTTCAGCACCCACAAGGCAACTCACAACCATTTGTAATTACAAAATTCTGCAGAGGTaGTGGGCTGGAAGGGTGATT | + |
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Preference number: 2 (lower is better) Translates to: DLGLISAPTRQLTTICNYKILQR*WAGRVI Trigger: AATCACCCTTCCAGCCCACCACCTCTGCAGAATTTT...GTAATTACAAATGGTTGTGAGTTGCCTTGTGGGTGCTGAAATCAAACCCAGGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159834.2 |
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| 3UTR-3UTR CCA 90 bp | GGTTTGATTTCAGCACCCACAAGGCAACTCACAACCATTTGTAATTACACTTTCTATGGGTTGGGGAAGTaGGAAAGCCCACTACTTGAA | + |
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Preference number: 2 (lower is better) Translates to: GLISAPTRQLTTICNYTFYGLGK*ESPLLE Trigger: TTCAAGTAGTGGGCTTTCCCACTTCCCCAACCCATA...GAAAGTGTAATTACAAATGGTTGTGAGTTGCCTTGTGGGTGCTGAAATCAAACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021307.10 |
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| 3UTR-3UTR GCA 90 bp | GGTTTGATTTCAGCACCCACAAGGCAACTCACAACCATTTGTAATTACACTTTCAGTGTCTTTTTAAAATaGCTTCTGAGACCACTGAGG | + |
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Preference number: 2 (lower is better) Translates to: GLISAPTRQLTTICNYTFSVFLK*LLRPLR Trigger: CCTCAGTGGTCTCAGAAGGCATTTTAAAAAGACACT...GAAAGTGTAATTACAAATGGTTGTGAGTTGCCTTGTGGGTGCTGAAATCAAACC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021307.10 ENSMUST00000159834.2 |
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| 3UTR GCA 72 bp | TGCTGTCCGGTCGCTCAGCCTCGCGTGCTCAGCCAATaGCACCAGCAGCTCCCCAAGAAGTCCAAAGCCCAC | + |
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Preference number: 3 (lower is better) Translates to: CCPVAQPRVLSQ*HQQLPKKSKAH Trigger: GTGGGCTTTGGACTTCTTGGGGAGCTGCTGGTGGCATTGGCTGAGCACGCGAGGCTGAGCGACCGGACAGCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159834.2 |
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| 3UTR GCA 72 bp | ATCCCCAGCACTGCTGTCCGGTCGCTCAGCCTCGCGTaGTCAGCCAATGCCACCAGCAGCTCCCCAAGAAGT | + |
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Preference number: 3 (lower is better) Translates to: IPSTAVRSLSLA*SANATSSSPRS Trigger: ACTTCTTGGGGAGCTGCTGGTGGCATTGGCTGAGCACGCGAGGCTGAGCGACCGGACAGCAGTGCTGGGGAT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159834.2 |
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| 3UTR GCA 72 bp | CCCAGTGTTAGCCAGGCTGTGCAGAATCCCCAGCACTaGTGTCCGGTCGCTCAGCCTCGCGTGCTCAGCCAA | + |
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Preference number: 3 (lower is better) Translates to: PSVSQAVQNPQH*CPVAQPRVLSQ Trigger: TTGGCTGAGCACGCGAGGCTGAGCGACCGGACAGCAGTGCTGGGGATTCTGCACAGCCTGGCTAACACTGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159834.2 |
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| 3UTR TCA 72 bp | CTTCTCCCTGTAGCCCAGCAGATGGCTCCTCCACAGTaGGGCCCTCCTGCATGGGTCTGGTGGTGCTCATGG | + |
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Preference number: 3 (lower is better) Translates to: LLPVAQQMAPPQ*GPPAWVWWCSW Trigger: CCATGAGCACCACCAGACCCATGCAGGAGGGCCTCACTGTGGAGGAGCCATCTGCTGGGCTACAGGGAGAAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159834.2 |
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| 3UTR GCA 72 bp | AGGTTCAAGTTGAACCGCCCAGTGTTAGCCAGGCTGTaGAGAATCCCCAGCACTGCTGTCCGGTCGCTCAGC | + |
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Preference number: 3 (lower is better) Translates to: RFKLNRPVLARL*RIPSTAVRSLS Trigger: GCTGAGCGACCGGACAGCAGTGCTGGGGATTCTGCACAGCCTGGCTAACACTGGGCGGTTCAACTTGAACCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159834.2 |
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| 3UTR TCA 72 bp | CTTGCACAGCTGGTCATCTGGGATGCTAGCCAGACCTaGGCCAAAGGTTTGGGGATTTCCCAGGCTCAACCT | + |
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Preference number: 3 (lower is better) Translates to: LAQLVIWDASQT*AKGLGISQAQP Trigger: AGGTTGAGCCTGGGAAATCCCCAAACCTTTGGCTCAGGTCTGGCTAGCATCCCAGATGACCAGCTGTGCAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021307.10 |
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| 3UTR CCA 72 bp | ATCCGAGAGATAATGGGAAACCCTCACTTGCACAGCTaGTCATCTGGGATGCTAGCCAGACCTGAGCCAAAG | + |
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Preference number: 3 (lower is better) Translates to: IREIMGNPHLHS*SSGMLARPEPK Trigger: CTTTGGCTCAGGTCTGGCTAGCATCCCAGATGACCAGCTGTGCAAGTGAGGGTTTCCCATTATCTCTCGGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021307.10 |
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| 3UTR CCA 72 bp | CAAAACACTCTCAGCCAGCTGAGCCACTGGCTATCCTaGGGATCCACACAGATCAAATTATGGGTTGGGGAA | + |
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Preference number: 3 (lower is better) Translates to: QNTLSQLSHWLS*GSTQIKLWVGE Trigger: TTCCCCAACCCATAATTTGATCTGTGTGGATCCCCAGGATAGCCAGTGGCTCAGCTGGCTGAGAGTGTTTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021307.10 |
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| 3UTR CCA 72 bp | CCACTGAGGAATGCTGAGGGCAAACAGTCCTATCAATaGACTCCATACAGTTCTAGCAGCTCCTGTAGGAGC | + |
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Preference number: 3 (lower is better) Translates to: PLRNAEGKQSYQ*TPYSSSSSCRS Trigger: GCTCCTACAGGAGCTGCTAGAACTGTATGGAGTCCATTGATAGGACTGTTTGCCCTCAGCATTCCTCAGTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159834.2 |
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| 3UTR-3UTR CAA 90 bp | CAAGGGCGAGGTGATTTATTCCCAGCTCAAGTACAAGATGCCGTTCTAATGCTAAGATCAAATTATGGGTaGGGGAAGTGGGAAAGCCCA | + |
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Preference number: 3 (lower is better) Translates to: QGRGDLFPAQVQDAVLMLRSNYG*GKWESP Trigger: TGGGCTTTCCCACTTCCCCAACCCATAATTTGATCT...TAGCATTAGAACGGCATCTTGTACTTGAGCTGGGAATAAATCACCTCGCCCTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021307.10 |
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| 3UTR CCA 72 bp | ATTCTAGAACTTCGCACTCTCACCTTTCTAGAACACTaGCACTTACCCAAAAATGGGCCAGGGGAATCTAGA | + |
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Preference number: 3 (lower is better) Translates to: ILELRTLTFLEH*HLPKNGPGESR Trigger: TCTAGATTCCCCTGGCCCATTTTTGGGTAAGTGCCAGTGTTCTAGAAAGGTGAGAGTGCGAAGTTCTAGAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021307.10 |
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| 3UTR TCA 72 bp | AGTGGGAAAGCCCACTACTTGAAAAGGGAAGCGCTGTaGATTTCTCACAACCATTCTTTCAACAACTCTGCA | + |
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Preference number: 3 (lower is better) Translates to: SGKAHYLKREAL*ISHNHSFNNSA Trigger: TGCAGAGTTGTTGAAAGAATGGTTGTGAGAAATTCACAGCGCTTCCCTTTTCAAGTAGTGGGCTTTCCCACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021307.10 |
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| 3UTR TCA 72 bp | AAATTATGGGTTGGGGAAGTGGGAAAGCCCACTACTTaGAAAGGGAAGCGCTGTGAATTTCTCACAACCATT | + |
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Preference number: 3 (lower is better) Translates to: KLWVGEVGKPTT*KGKRCEFLTTI Trigger: AATGGTTGTGAGAAATTCACAGCGCTTCCCTTTTCAAGTAGTGGGCTTTCCCACTTCCCCAACCCATAATTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021307.10 |
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| 3UTR CCA 72 bp | AAGGGGCGTTTGCTTCTTGATGAGCTGTTCATTCACTaGCTCTGGGTTATAAATAGTCTGGTTAGGAGTTAT | + |
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Preference number: 3 (lower is better) Translates to: KGRLLLDELFIH*LWVINSLVRSY Trigger: ATAACTCCTAACCAGACTATTTATAACCCAGAGCCAGTGAATGAACAGCTCATCAAGAAGCAAACGCCCCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021307.10 |
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| CDS-3UTR CCA 90 bp | TGTCCGGTCGCTCAGCCTCGCGTGCTCAGCCAATGCCACCAGCAGCTCCCCAAGCAACTGCCCGTAACTTaGCTGCGTTCTCCCTTTTGT | + |
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Preference number: 4 (lower is better) Translates to: CPVAQPRVLSQCHQQLPKQLPVT*LRSPFC Trigger: ACAAAAGGGAGAACGCAGCCAAGTTACGGGCAGTTG...CTTGGGGAGCTGCTGGTGGCATTGGCTGAGCACGCGAGGCTGAGCGACCGGACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159834.2 |
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| CDS-3UTR GCA 90 bp | TTCTTAAGTGTCGCCGCCAATCACGGTAAAATTCTGCAGAGGTGGTGGGCTGGAGCAGCAAGGGCAGCCTaGAGCTCTTTCTCCAGGGCC | + |
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Preference number: 4 (lower is better) Translates to: FLSVAANHGKILQRWWAGAARAA*SSFSRA Trigger: GGCCCTGGAGAAAGAGCTGCAGGCTGCCCTTGCTGC...TCCAGCCCACCACCTCTGCAGAATTTTACCGTGATTGGCGGCGACACTTAAGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159834.2 |
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| 3UTR CAA 72 bp | TCTCGCTCTGCATGGCTCAGCAGGCTCAGGTTCAAGTaGAACCGCCCAGTGTTAGCCAGGCTGTGCAGAATC | + |
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Preference number: 4 (lower is better) Translates to: SRSAWLSRLRFK*NRPVLARLCRI Trigger: GATTCTGCACAGCCTGGCTAACACTGGGCGGTTCAACTTGAACCTGAGCCTGCTGAGCCATGCAGAGCGAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159834.2 |
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| CDS-3UTR GCA 90 bp | GTTAAGAACACTGGCTTCTCTTCCAGGGGACCTGGGTTTGATTTCAGCACCCACCAGAATCCCCAGCACTaGTGTCCGGTCGCTCAGCCT | + |
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Preference number: 4 (lower is better) Translates to: VKNTGFSSRGPGFDFSTHQNPQH*CPVAQP Trigger: AGGCTGAGCGACCGGACAGCAGTGCTGGGGATTCTG...GTGGGTGCTGAAATCAAACCCAGGTCCCCTGGAAGAGAAGCCAGTGTTCTTAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021307.10 |
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| CDS-3UTR GCA 90 bp | GTTCAAGTTGAACCGCCCAGTGTTAGCCAGGCTGTGCAGAATCCCCAGCACTGCGTTCAGAGCTCTTCTTaGCGCTCTGCAACTGGGGTA | + |
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Preference number: 4 (lower is better) Translates to: VQVEPPSVSQAVQNPQHCVQSSS*RSATGV Trigger: TACCCCAGTTGCAGAGCGGCAAGAAGAGCTCTGAAC...GCAGTGCTGGGGATTCTGCACAGCCTGGCTAACACTGGGCGGTTCAACTTGAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159834.2 |
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| CDS-3UTR GCA 90 bp | ACTCTCACCTTTCTAGAACACTGGCACTTACCCAAAAATGGGCCAGGGGAATCTGCAGCAAGGGCAGCCTaGAGCTCTTTCTCCAGGGCC | + |
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Preference number: 4 (lower is better) Translates to: TLTFLEHWHLPKNGPGESAARAA*SSFSRA Trigger: GGCCCTGGAGAAAGAGCTGCAGGCTGCCCTTGCTGC...AGATTCCCCTGGCCCATTTTTGGGTAAGTGCCAGTGTTCTAGAAAGGTGAGAGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021307.10 |
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| CDS-3UTR CCA 90 bp | GATAGCTCAGCGGTTAAGAACACTGGCTTCTCTTCCAGGGGACCTGGGTTTGATGCAGAGGTGGTGGGCTaGAAGGGTGATTTCTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: DSSAVKNTGFSSRGPGFDAEVVG*KGDFSW Trigger: CCAGGAGAAATCACCCTTCCAGCCCACCACCTCTGC...ATCAAACCCAGGTCCCCTGGAAGAGAAGCCAGTGTTCTTAACCGCTGAGCTATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021307.10 |
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| CDS-3UTR CCA 90 bp | CGGTTAAGAACACTGGCTTCTCTTCCAGGGGACCTGGGTTTGATTTCAGCACCCAAGCCCACATCCATCTaGAAGAGGTGGCCCAGCTTG | + |
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Preference number: 4 (lower is better) Translates to: RLRTLASLPGDLGLISAPKPTSI*KRWPSL Trigger: CAAGCTGGGCCACCTCTTCCAGATGGATGTGGGCTT...GGGTGCTGAAATCAAACCCAGGTCCCCTGGAAGAGAAGCCAGTGTTCTTAACCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021307.10 |
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| CDS-3UTR TCA 90 bp | TCGCTCTGCATGGCTCAGCAGGCTCAGGTTCAAGTTGAACCGCCCAGTGTTAGCCAGAGGTTTCAGGTGTaGTGCAAGAACAATACCTCT | + |
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Preference number: 4 (lower is better) Translates to: SLCMAQQAQVQVEPPSVSQRFQV*CKNNTS Trigger: AGAGGTATTGTTCTTGCATCACACCTGAAACCTCTG...GCTAACACTGGGCGGTTCAACTTGAACCTGAGCCTGCTGAGCCATGCAGAGCGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159834.2 |
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| CDS-3UTR TCA 90 bp | CAAATTATGGGTTGGGGAAGTGGGAAAGCCCACTACTTGAAAAGGGAAGCGCTGGGTGGGCTGGAAGGGTaGTTTCTCCTGGGGTATTTC | + |
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Preference number: 4 (lower is better) Translates to: QIMGWGSGKAHYLKREALGGLEG*FLLGYF Trigger: GAAATACCCCAGGAGAAATCACCCTTCCAGCCCACC...CAGCGCTTCCCTTTTCAAGTAGTGGGCTTTCCCACTTCCCCAACCCATAATTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021307.10 |
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| CDS-3UTR CCA 90 bp | TGGTCATCTGGGATGCTAGCCAGACCTGAGCCAAAGGTTTGGGGATTTCCCAGGAAAATTCTGCAGAGGTaGTGGGCTGGAAGGGTGATT | + |
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Preference number: 4 (lower is better) Translates to: WSSGMLARPEPKVWGFPRKILQR*WAGRVI Trigger: AATCACCCTTCCAGCCCACCACCTCTGCAGAATTTT...CCTGGGAAATCCCCAAACCTTTGGCTCAGGTCTGGCTAGCATCCCAGATGACCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021307.10 |
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| CDS-3UTR TCA 90 bp | ATGCCACCAGCAGCTCCCCAAGAAGTCCAAAGCCCACATCCATCTGGAAGAGGTCAAGAACAATACCTCTaGACTCCTCATAGGAAGGCA | + |
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Preference number: 4 (lower is better) Translates to: MPPAAPQEVQSPHPSGRGQEQYL*TPHRKA Trigger: TGCCTTCCTATGAGGAGTTCAGAGGTATTGTTCTTG...ACCTCTTCCAGATGGATGTGGGCTTTGGACTTCTTGGGGAGCTGCTGGTGGCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159834.2 |
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| CDS-3UTR TCA 90 bp | ATTCTTTCAACAACTCTGCAGAAGGCACAAAGTAAACACCACAGGATTCCTTCCATGGCTCCTCCACAGTaGGGCCCTCCTGCATGGGTC | + |
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Preference number: 4 (lower is better) Translates to: ILSTTLQKAQSKHHRIPSMAPPQ*GPPAWV Trigger: GACCCATGCAGGAGGGCCTCACTGTGGAGGAGCCAT...GGAAGGAATCCTGTGGTGTTTACTTTGTGCCTTCTGCAGAGTTGTTGAAAGAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021307.10 |
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| CDS-3UTR CCA 90 bp | GTTAAGAACACTGGCTTCTCTTCCAGGGGACCTGGGTTTGATTTCAGCACCCACCAACTGCCCGTAACTTaGCTGCGTTCTCCCTTTTGT | + |
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Preference number: 4 (lower is better) Translates to: VKNTGFSSRGPGFDFSTHQLPVT*LRSPFC Trigger: ACAAAAGGGAGAACGCAGCCAAGTTACGGGCAGTTG...GTGGGTGCTGAAATCAAACCCAGGTCCCCTGGAAGAGAAGCCAGTGTTCTTAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021307.10 |
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| 3UTR CAA 72 bp | CTTTCATCCATCCGAGAGATAATGGGAAACCCTCACTaGCACAGCTGGTCATCTGGGATGCTAGCCAGACCT | + |
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Preference number: 4 (lower is better) Translates to: LSSIREIMGNPH*HSWSSGMLARP Trigger: AGGTCTGGCTAGCATCCCAGATGACCAGCTGTGCAAGTGAGGGTTTCCCATTATCTCTCGGATGGATGAAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021307.10 |
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| CDS-3UTR TCA 90 bp | TTCTTAAGTGTCGCCGCCAATCACGGTAAAATTCTGCAGAGGTGGTGGGCTGGAACTGGGGTATTTCAGTaGCCACATCTTGAGAAGTCC | + |
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Preference number: 4 (lower is better) Translates to: FLSVAANHGKILQRWWAGTGVFQ*PHLEKS Trigger: GGACTTCTCAAGATGTGGTCACTGAAATACCCCAGT...TCCAGCCCACCACCTCTGCAGAATTTTACCGTGATTGGCGGCGACACTTAAGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159834.2 |
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| CDS-3UTR GCA 90 bp | AGATCAAATTATGGGTTGGGGAAGTGGGAAAGCCCACTACTTGAAAAGGGAAGCGTGTTAGCCAGGCTGTaGAGAATCCCCAGCACTGCT | + |
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Preference number: 4 (lower is better) Translates to: RSNYGLGKWESPLLEKGSVLARL*RIPSTA Trigger: AGCAGTGCTGGGGATTCTGCACAGCCTGGCTAACAC...GCTTCCCTTTTCAAGTAGTGGGCTTTCCCACTTCCCCAACCCATAATTTGATCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021307.10 |
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| CDS-3UTR GCA 90 bp | CAAATTATGGGTTGGGGAAGTGGGAAAGCCCACTACTTGAAAAGGGAAGCGCTGATCACGGTAAAATTCTaGAGAGGTGGTGGGCTGGAA | + |
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Preference number: 4 (lower is better) Translates to: QIMGWGSGKAHYLKREALITVKF*RGGGLE Trigger: TTCCAGCCCACCACCTCTGCAGAATTTTACCGTGAT...CAGCGCTTCCCTTTTCAAGTAGTGGGCTTTCCCACTTCCCCAACCCATAATTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021307.10 |
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| 3UTR CAA 72 bp | TTAAGAACACTGGCTTCTCTTCCAGGGGACCTGGGTTaGATTTCAGCACCCACAAGGCAACTCACAACCATT | + |
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Preference number: 4 (lower is better) Translates to: LRTLASLPGDLG*ISAPTRQLTTI Trigger: AATGGTTGTGAGTTGCCTTGTGGGTGCTGAAATCAAACCCAGGTCCCCTGGAAGAGAAGCCAGTGTTCTTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021307.10 |
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| CDS-3UTR CCA 90 bp | ATTCTTTCAACAACTCTGCAGAAGGCACAAAGTAAACACCACAGGATTCCTTCCCCTGCATGGGTCTGGTaGTGCTCATGGCTTGCAACT | + |
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Preference number: 4 (lower is better) Translates to: ILSTTLQKAQSKHHRIPSPAWVW*CSWLAT Trigger: AGTTGCAAGCCATGAGCACCACCAGACCCATGCAGG...GGAAGGAATCCTGTGGTGTTTACTTTGTGCCTTCTGCAGAGTTGTTGAAAGAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021307.10 |
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| CDS-3UTR CCA 90 bp | AGATCAAATTATGGGTTGGGGAAGTGGGAAAGCCCACTACTTGAAAAGGGAAGCGTCTGGTGGTGCTCATaGCTTGCAACTTCTGAAACA | + |
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Preference number: 4 (lower is better) Translates to: RSNYGLGKWESPLLEKGSVWWCS*LATSET Trigger: TGTTTCAGAAGTTGCAAGCCATGAGCACCACCAGAC...GCTTCCCTTTTCAAGTAGTGGGCTTTCCCACTTCCCCAACCCATAATTTGATCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021307.10 |
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| CDS-3UTR TCA 90 bp | CAAGGGCGAGGTGATTTATTCCCAGCTCAAGTACAAGATGCCGTTCTAATGCTACAAGAACAATACCTCTaGACTCCTCATAGGAAGGCA | + |
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Preference number: 4 (lower is better) Translates to: QGRGDLFPAQVQDAVLMLQEQYL*TPHRKA Trigger: TGCCTTCCTATGAGGAGTTCAGAGGTATTGTTCTTG...TAGCATTAGAACGGCATCTTGTACTTGAGCTGGGAATAAATCACCTCGCCCTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021307.10 |
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| CDS-3UTR TCA 90 bp | ACAGATCAAATTATGGGTTGGGGAAGTGGGAAAGCCCACTACTTGAAAAGGGAACAGAGGTTTCAGGTGTaGTGCAAGAACAATACCTCT | + |
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Preference number: 4 (lower is better) Translates to: TDQIMGWGSGKAHYLKREQRFQV*CKNNTS Trigger: AGAGGTATTGTTCTTGCATCACACCTGAAACCTCTG...TTCCCTTTTCAAGTAGTGGGCTTTCCCACTTCCCCAACCCATAATTTGATCTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021307.10 |
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| CDS-3UTR TCA 90 bp | GATGAGCTGTTCATTCACTGGCTCTGGGTTATAAATAGTCTGGTTAGGAGTTATCCTGGGGTATTTCAGTaGCCACATCTTGAGAAGTCC | + |
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Preference number: 4 (lower is better) Translates to: DELFIHWLWVINSLVRSYPGVFQ*PHLEKS Trigger: GGACTTCTCAAGATGTGGTCACTGAAATACCCCAGG...ATAACTCCTAACCAGACTATTTATAACCCAGAGCCAGTGAATGAACAGCTCATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021307.10 |
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| CDS-3UTR CCA 90 bp | GGTTTGATTTCAGCACCCACAAGGCAACTCACAACCATTTGTAATTACACTTTCATTCTGCAGAGGTGGTaGGCTGGAAGGGTGATTTCT | + |
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Preference number: 4 (lower is better) Translates to: GLISAPTRQLTTICNYTFILQRW*AGRVIS Trigger: AGAAATCACCCTTCCAGCCCACCACCTCTGCAGAAT...GAAAGTGTAATTACAAATGGTTGTGAGTTGCCTTGTGGGTGCTGAAATCAAACC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021307.10 |
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| CDS-3UTR CAA 90 bp | ATGCCACCAGCAGCTCCCCAAGAAGTCCAAAGCCCACATCCATCTGGAAGAGGTTCCCATCTTGTCCTTTaGTTCCAGAGGTTTCAGGTG | + |
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Preference number: 5 (lower is better) Translates to: MPPAAPQEVQSPHPSGRGSHLVL*FQRFQV Trigger: CACCTGAAACCTCTGGAACAAAAGGACAAGATGGGA...ACCTCTTCCAGATGGATGTGGGCTTTGGACTTCTTGGGGAGCTGCTGGTGGCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159834.2 |
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| CDS-3UTR CAA 90 bp | ATGCCACCAGCAGCTCCCCAAGAAGTCCAAAGCCCACATCCATCTGGAAGAGGTCTCTTTCCTCCCATCTaGTCCTTTTGTTCCAGAGGT | + |
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Preference number: 5 (lower is better) Translates to: MPPAAPQEVQSPHPSGRGLFPPI*SFCSRG Trigger: ACCTCTGGAACAAAAGGACAAGATGGGAGGAAAGAG...ACCTCTTCCAGATGGATGTGGGCTTTGGACTTCTTGGGGAGCTGCTGGTGGCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159834.2 |
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| CDS-3UTR CAA 90 bp | ATTCTTTCAACAACTCTGCAGAAGGCACAAAGTAAACACCACAGGATTCCTTCCGGTGGTGCTCATGGCTaGCAACTTCTGAAACAGGCG | + |
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Preference number: 5 (lower is better) Translates to: ILSTTLQKAQSKHHRIPSGGAHG*QLLKQA Trigger: CGCCTGTTTCAGAAGTTGCAAGCCATGAGCACCACC...GGAAGGAATCCTGTGGTGTTTACTTTGTGCCTTCTGCAGAGTTGTTGAAAGAAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021307.10 |
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| CDS-3UTR CAA 90 bp | AGATCAAATTATGGGTTGGGGAAGTGGGAAAGCCCACTACTTGAAAAGGGAAGCCTCTTTCCTCCCATCTaGTCCTTTTGTTCCAGAGGT | + |
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Preference number: 5 (lower is better) Translates to: RSNYGLGKWESPLLEKGSLFPPI*SFCSRG Trigger: ACCTCTGGAACAAAAGGACAAGATGGGAGGAAAGAG...GCTTCCCTTTTCAAGTAGTGGGCTTTCCCACTTCCCCAACCCATAATTTGATCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021307.10 |
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| CDS-3UTR CAA 90 bp | ACAGATCAAATTATGGGTTGGGGAAGTGGGAAAGCCCACTACTTGAAAAGGGAATCCCATCTTGTCCTTTaGTTCCAGAGGTTTCAGGTG | + |
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Preference number: 5 (lower is better) Translates to: TDQIMGWGSGKAHYLKRESHLVL*FQRFQV Trigger: CACCTGAAACCTCTGGAACAAAAGGACAAGATGGGA...TTCCCTTTTCAAGTAGTGGGCTTTCCCACTTCCCCAACCCATAATTTGATCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021307.10 |
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| CDS CAA 90 bp | GGCACCCTTTGCTCAACTGCCCGTAACTTGGCTGCGTTCTCCCTTTaGTACTTCTCGTCAGCAGCAAGGGCAGCCTGCAGCTCTTTCTCC | + |
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Preference number: 6 (lower is better) Translates to: GTLCSTARNLAAFSL*YFSSAARAACSSFS Trigger: GGAGAAAGAGCTGCAGGCTGCCCTTGCTGCTGACGAGAAGTACAAAAGGGAGAACGCAGCCAAGTTACGGGCAGTTGAGCAAAGGGTGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021307.10 ENSMUST00000159834.2 |
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| CDS CAA 72 bp | TGCTCAACTGCCCGTAACTTGGCTGCGTTCTCCCTTTaGTACTTCTCGTCAGCAGCAAGGGCAGCCTGCAGC | + |
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Preference number: 6 (lower is better) Translates to: CSTARNLAAFSL*YFSSAARAACS Trigger: GCTGCAGGCTGCCCTTGCTGCTGACGAGAAGTACAAAAGGGAGAACGCAGCCAAGTTACGGGCAGTTGAGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021307.10 ENSMUST00000159834.2 |
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| CDS CCA 72 bp | CATAGGAAGGCACCCTTTGCTCAACTGCCCGTAACTTaGCTGCGTTCTCCCTTTTGTACTTCTCGTCAGCAG | + |
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Preference number: 6 (lower is better) Translates to: HRKAPFAQLPVT*LRSPFCTSRQQ Trigger: CTGCTGACGAGAAGTACAAAAGGGAGAACGCAGCCAAGTTACGGGCAGTTGAGCAAAGGGTGCCTTCCTATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021307.10 ENSMUST00000159834.2 |
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| CDS CAA 90 bp | GCTCTTCTTGCCGCTCTGCAACTGGGGTATTTCAGTGACCACATCTaGAGAAGTCCTTTCCCGAGTAGTGTGACAATTCCAGGGCACAAA | + |
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Preference number: 6 (lower is better) Translates to: ALLAALQLGYFSDHI*RSPFPSSVTIPGHK Trigger: TTTGTGCCCTGGAATTGTCACACTACTCGGGAAAGGACTTCTCAAGATGTGGTCACTGAAATACCCCAGTTGCAGAGCGGCAAGAAGAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159834.2 |
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| CDS TCA 72 bp | TCCCATCTTGTCCTTTTGTTCCAGAGGTTTCAGGTGTaGTGCAAGAACAATACCTCTGAACTCCTCATAGGA | + |
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Preference number: 6 (lower is better) Translates to: SHLVLLFQRFQV*CKNNTSELLIG Trigger: TCCTATGAGGAGTTCAGAGGTATTGTTCTTGCATCACACCTGAAACCTCTGGAACAAAAGGACAAGATGGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021307.10 ENSMUST00000159834.2 |
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