RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CBY3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000050087

Ensembl transcript IDs: ENSMUST00000052596.3, ENSMUST00000164067.2

Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp GGTGGAGGAGGGCAGAGGCGTGCGCGCGCTTGCGCGCTTCCCCTCTaGGGTCCAGCGGCCGCCGCGGAAAACGAAGGCCTCGTCGCTCAG +
Preference number: 5 (lower is better)
Translates to: GGGGQRRARACALPL*GPAAAAENEGLVAQ
Trigger: CTGAGCGACGAGGCCTTCGTTTTCCGCGGCGGCCGCTGGACCCCAGAGGGGAAGCGCGCAAGCGCGCGCACGCCTCTGCCCTCCTCCACC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052596.3
ENSMUST00000164067.2
CDS GCA 90 bp GGCCTCCGCGGCGAGAAGCGGCGCGAGAAGTGGTCGACCCAGAATTaGCTCACCTGTTTCCACAGGCGGCCCGCTTGGCTCGCCGCCAGG +
Preference number: 5 (lower is better)
Translates to: GLRGEKRREKWSTQN*LTCFHRRPAWLAAR
Trigger: CCTGGCGGCGAGCCAAGCGGGCCGCCTGTGGAAACAGGTGAGGCAATTCTGGGTCGACCACTTCTCGCGCCGCTTCTCGCCGCGGAGGCC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164067.2
CDS TCA 90 bp GGCCTGTCGCGTGCGGTGGTCCAGCAGATAGAAGGTGGACATGGATaGGATATGGCGCAGCGGTGGCCTCCGCGGCGAGAAGCGGCGCGA +
Preference number: 5 (lower is better)
Translates to: GLSRAVVQQIEGGHG*DMAQRWPPRREAAR
Trigger: TCGCGCCGCTTCTCGCCGCGGAGGCCACCGCTGCGCCATATCTCATCCATGTCCACCTTCTATCTGCTGGACCACCGCACGCGACAGGCC
67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164067.2
CDS CCA 90 bp ATATGGCGCAGCGGTGGCCTCCGCGGCGAGAAGCGGCGCGAGAAGTaGTCGACCCAGAATTGCCTCACCTGTTTCCACAGGCGGCCCGCT +
Preference number: 5 (lower is better)
Translates to: IWRSGGLRGEKRREK*STQNCLTCFHRRPA
Trigger: AGCGGGCCGCCTGTGGAAACAGGTGAGGCAATTCTGGGTCGACCACTTCTCGCGCCGCTTCTCGCCGCGGAGGCCACCGCTGCGCCATAT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164067.2
CDS TCA 90 bp AAACGAAGGCCTCGTCGCTCAGTCGGGTGCGCGGCTCGCCGTAGTTaGGCCCCAGTTCGGCCTGTCGCGTGCGGTGGTCCAGCAGATAGA +
Preference number: 5 (lower is better)
Translates to: KRRPRRSVGCAARRS*APVRPVACGGPADR
Trigger: TCTATCTGCTGGACCACCGCACGCGACAGGCCGAACTGGGGCTCAACTACGGCGAGCCGCGCACCCGACTGAGCGACGAGGCCTTCGTTT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052596.3
ENSMUST00000164067.2
CDS CCA 90 bp GTTCGGCCTGTCGCGTGCGGTGGTCCAGCAGATAGAAGGTGGACATaGATGAGATATGGCGCAGCGGTGGCCTCCGCGGCGAGAAGCGGC +
Preference number: 5 (lower is better)
Translates to: VRPVACGGPADRRWT*MRYGAAVASAARSG
Trigger: GCCGCTTCTCGCCGCGGAGGCCACCGCTGCGCCATATCTCATCCATGTCCACCTTCTATCTGCTGGACCACCGCACGCGACAGGCCGAAC
66% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164067.2
CDS CCA 90 bp GTGTGGGCCACGCGGGGCGCGCGGGTGTCTGGAACCCTGATGTTCTaGAATGGTGAAGGCGAGCCAGTGGCACTGCTGGAAGATGTGGTG +
Preference number: 5 (lower is better)
Translates to: VWATRGARVSGTLMF*NGEGEPVALLEDVV
Trigger: CACCACATCTTCCAGCAGTGCCACTGGCTCGCCTTCACCATTCCAGAACATCAGGGTTCCAGACACCCGCGCGCCCCGCGTGGCCCACAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164067.2
CDS CCA 90 bp TGGTCGACCCAGAATTGCCTCACCTGTTTCCACAGGCGGCCCGCTTaGCTCGCCGCCAGGCACTCAAAGGCCTCCAGGGTGAAGGTGGTG +
Preference number: 5 (lower is better)
Translates to: WSTQNCLTCFHRRPA*LAARHSKASRVKVV
Trigger: CACCACCTTCACCCTGGAGGCCTTTGAGTGCCTGGCGGCGAGCCAAGCGGGCCGCCTGTGGAAACAGGTGAGGCAATTCTGGGTCGACCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164067.2
CDS GCA 72 bp CGGGATGGTGGAGGAGGGCAGAGGCGTGCGCGCGCTTaGGCGCTTCCCCTCTGGGGTCCAGCGGCCGCCGCG +
Preference number: 6 (lower is better)
Translates to: RDGGGGQRRARA*ALPLWGPAAAA
Trigger: CGCGGCGGCCGCTGGACCCCAGAGGGGAAGCGCGCAAGCGCGCGCACGCCTCTGCCCTCCTCCACCATCCCG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052596.3
ENSMUST00000164067.2
CDS CAA 72 bp CCGGGATGGTGGAGGAGGGCAGAGGCGTGCGCGCGCTaGCGCGCTTCCCCTCTGGGGTCCAGCGGCCGCCGC +
Preference number: 6 (lower is better)
Translates to: PGWWRRAEACAR*RASPLGSSGRR
Trigger: GCGGCGGCCGCTGGACCCCAGAGGGGAAGCGCGCAAGCGCGCGCACGCCTCTGCCCTCCTCCACCATCCCGG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052596.3
ENSMUST00000164067.2
CDS CCA 72 bp GGGCAGAGGCGTGCGCGCGCTTGCGCGCTTCCCCTCTaGGGTCCAGCGGCCGCCGCGGAAAACGAAGGCCTC +
Preference number: 6 (lower is better)
Translates to: GQRRARACALPL*GPAAAAENEGL
Trigger: GAGGCCTTCGTTTTCCGCGGCGGCCGCTGGACCCCAGAGGGGAAGCGCGCAAGCGCGCGCACGCCTCTGCCC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052596.3
ENSMUST00000164067.2
CDS TCA 72 bp CTTGGCTCGCCGCCAGGCACTCAAAGGCCTCCAGGGTaGAGGTGGTGTGGGCCACGCGGGGCGCGCGGGTGT +
Preference number: 6 (lower is better)
Translates to: LGSPPGTQRPPG*RWCGPRGARGC
Trigger: ACACCCGCGCGCCCCGCGTGGCCCACACCACCTTCACCCTGGAGGCCTTTGAGTGCCTGGCGGCGAGCCAAG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164067.2
CDS CCA 72 bp GCCAGGCACTCAAAGGCCTCCAGGGTGAAGGTGGTGTaGGCCACGCGGGGCGCGCGGGTGTCTGGAACCCTG +
Preference number: 6 (lower is better)
Translates to: ARHSKASRVKVV*ATRGARVSGTL
Trigger: CAGGGTTCCAGACACCCGCGCGCCCCGCGTGGCCCACACCACCTTCACCCTGGAGGCCTTTGAGTGCCTGGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164067.2
CDS CAA 90 bp TGGCCTCCGCGGCGAGAAGCGGCGCGAGAAGTGGTCGACCCAGAATaGCCTCACCTGTTTCCACAGGCGGCCCGCTTGGCTCGCCGCCAG +
Preference number: 6 (lower is better)
Translates to: WPPRREAAREVVDPE*PHLFPQAARLARRQ
Trigger: CTGGCGGCGAGCCAAGCGGGCCGCCTGTGGAAACAGGTGAGGCAATTCTGGGTCGACCACTTCTCGCGCCGCTTCTCGCCGCGGAGGCCA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164067.2
CDS TCA 72 bp TGTGGGCCACGCGGGGCGCGCGGGTGTCTGGAACCCTaGTGTTCTGGAATGGTGAAGGCGAGCCAGTGGCAC +
Preference number: 6 (lower is better)
Translates to: CGPRGARGCLEP*CSGMVKASQWH
Trigger: GTGCCACTGGCTCGCCTTCACCATTCCAGAACATCAGGGTTCCAGACACCCGCGCGCCCCGCGTGGCCCACA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164067.2
CDS GCA 72 bp GGCGAGAAGCGGCGCGAGAAGTGGTCGACCCAGAATTaGCTCACCTGTTTCCACAGGCGGCCCGCTTGGCTC +
Preference number: 6 (lower is better)
Translates to: GEKRREKWSTQN*LTCFHRRPAWL
Trigger: GAGCCAAGCGGGCCGCCTGTGGAAACAGGTGAGGCAATTCTGGGTCGACCACTTCTCGCGCCGCTTCTCGCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164067.2
CDS CCA 72 bp CAGAATTGCCTCACCTGTTTCCACAGGCGGCCCGCTTaGCTCGCCGCCAGGCACTCAAAGGCCTCCAGGGTG +
Preference number: 6 (lower is better)
Translates to: QNCLTCFHRRPA*LAARHSKASRV
Trigger: CACCCTGGAGGCCTTTGAGTGCCTGGCGGCGAGCCAAGCGGGCCGCCTGTGGAAACAGGTGAGGCAATTCTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164067.2
CDS CCA 72 bp GTCGCGTGCGGTGGTCCAGCAGATAGAAGGTGGACATaGATGAGATATGGCGCAGCGGTGGCCTCCGCGGCG +
Preference number: 6 (lower is better)
Translates to: VACGGPADRRWT*MRYGAAVASAA
Trigger: CGCCGCGGAGGCCACCGCTGCGCCATATCTCATCCATGTCCACCTTCTATCTGCTGGACCACCGCACGCGAC
65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164067.2
CDS CAA 72 bp CCAGAATTGCCTCACCTGTTTCCACAGGCGGCCCGCTaGGCTCGCCGCCAGGCACTCAAAGGCCTCCAGGGT +
Preference number: 6 (lower is better)
Translates to: PELPHLFPQAAR*ARRQALKGLQG
Trigger: ACCCTGGAGGCCTTTGAGTGCCTGGCGGCGAGCCAAGCGGGCCGCCTGTGGAAACAGGTGAGGCAATTCTGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164067.2
CDS CAA 72 bp CGGCGAGAAGCGGCGCGAGAAGTGGTCGACCCAGAATaGCCTCACCTGTTTCCACAGGCGGCCCGCTTGGCT +
Preference number: 6 (lower is better)
Translates to: RREAAREVVDPE*PHLFPQAARLA
Trigger: AGCCAAGCGGGCCGCCTGTGGAAACAGGTGAGGCAATTCTGGGTCGACCACTTCTCGCGCCGCTTCTCGCCG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164067.2
CDS CAA 90 bp GTGGTCGACCCAGAATTGCCTCACCTGTTTCCACAGGCGGCCCGCTaGGCTCGCCGCCAGGCACTCAAAGGCCTCCAGGGTGAAGGTGGT +
Preference number: 6 (lower is better)
Translates to: VVDPELPHLFPQAAR*ARRQALKGLQGEGG
Trigger: ACCACCTTCACCCTGGAGGCCTTTGAGTGCCTGGCGGCGAGCCAAGCGGGCCGCCTGTGGAAACAGGTGAGGCAATTCTGGGTCGACCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164067.2
CDS GCA 72 bp GCGCGCGGCTGGATTATAAGTACTCCCGCGCCCCTTTaGTTGGGCATCTTTCTCTTCCAGGAGCGCGCCGGG +
Preference number: 6 (lower is better)
Translates to: ARGWIISTPAPL*LGIFLFQERAG
Trigger: CCCGGCGCGCTCCTGGAAGAGAAAGATGCCCAAGCAAAGGGGCGCGGGAGTACTTATAATCCAGCCGCGCGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052596.3
ENSMUST00000164067.2
CDS CCA 72 bp ACGCGGGGCGCGCGGGTGTCTGGAACCCTGATGTTCTaGAATGGTGAAGGCGAGCCAGTGGCACTGCTGGAA +
Preference number: 6 (lower is better)
Translates to: TRGARVSGTLMF*NGEGEPVALLE
Trigger: TTCCAGCAGTGCCACTGGCTCGCCTTCACCATTCCAGAACATCAGGGTTCCAGACACCCGCGCGCCCCGCGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164067.2
CDS TCA 72 bp CGTGCGGTGGTCCAGCAGATAGAAGGTGGACATGGATaGGATATGGCGCAGCGGTGGCCTCCGCGGCGAGAA +
Preference number: 6 (lower is better)
Translates to: RAVVQQIEGGHG*DMAQRWPPRRE
Trigger: TTCTCGCCGCGGAGGCCACCGCTGCGCCATATCTCATCCATGTCCACCTTCTATCTGCTGGACCACCGCACG
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164067.2
CDS CCA 72 bp TTCCAGCAGCACCTGGCTCTTAATCGGCTGCACTTGTaGCTTCCAGGCCGGGATGGTGGAGGAGGGCAGAGG +
Preference number: 6 (lower is better)
Translates to: FQQHLALNRLHL*LPGRDGGGGQR
Trigger: CCTCTGCCCTCCTCCACCATCCCGGCCTGGAAGCCACAAGTGCAGCCGATTAAGAGCCAGGTGCTGCTGGAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052596.3
ENSMUST00000164067.2
CDS CAA 72 bp CTCTTCCAGCAGCACCTGGCTCTTAATCGGCTGCACTaGTGGCTTCCAGGCCGGGATGGTGGAGGAGGGCAG +
Preference number: 6 (lower is better)
Translates to: LFQQHLALNRLH*WLPGRDGGGGQ
Trigger: CTGCCCTCCTCCACCATCCCGGCCTGGAAGCCACAAGTGCAGCCGATTAAGAGCCAGGTGCTGCTGGAAGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052596.3
ENSMUST00000164067.2
CDS GCA 72 bp TGGCACTGCTGGAAGATGTGGTGGCGGTGCCCAAGCTaGTGTCCCAGGCCTGGCCCCATTTCATCTTGCTGT +
Preference number: 6 (lower is better)
Translates to: WHCWKMWWRCPS*CPRPGPISSCC
Trigger: ACAGCAAGATGAAATGGGGCCAGGCCTGGGACAGCAGCTTGGGCACCGCCACCACATCTTCCAGCAGTGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164067.2
CDS CCA 72 bp TGTTCTGGAATGGTGAAGGCGAGCCAGTGGCACTGCTaGAAGATGTGGTGGCGGTGCCCAAGCTGCTGTCCC +
Preference number: 6 (lower is better)
Translates to: CSGMVKASQWHC*KMWWRCPSCCP
Trigger: GGGACAGCAGCTTGGGCACCGCCACCACATCTTCCAGCAGTGCCACTGGCTCGCCTTCACCATTCCAGAACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164067.2
CDS GCA 72 bp TTATTCTCTTCCAGCAGCACCTGGCTCTTAATCGGCTaGACTTGTGGCTTCCAGGCCGGGATGGTGGAGGAG +
Preference number: 6 (lower is better)
Translates to: LFSSSSTWLLIG*TCGFQAGMVEE
Trigger: CTCCTCCACCATCCCGGCCTGGAAGCCACAAGTGCAGCCGATTAAGAGCCAGGTGCTGCTGGAAGAGAATAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052596.3
ENSMUST00000164067.2