Pregenerated sensors for CBX5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000009575Ensembl transcript IDs: ENSMUST00000108813.10, ENSMUST00000118152.8, ENSMUST00000122182.2
Found 142 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACATGTTTGATCCCAGTACTTGGGAGGCAGGGGCAGGCAGATCTCTaGGTTAGAGGCCAGCCTGGTCAACAGAGCAAGTTCCAGGACATC | + |
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Preference number: 1 (lower is better) Translates to: TCLIPVLGRQGQADL*VRGQPGQQSKFQDI Trigger: GATGTCCTGGAACTTGCTCTGTTGACCAGGCTGGCCTCTAACTCAGAGATCTGCCTGCCCCTGCCTCCCAAGTACTGGGATCAAACATGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
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| 3UTR CCA 90 bp | GTTCATGGCCAGCAGGCAGGGGTAAGGCAACTGCTGGCTACTATTTaGCAGGACATGAGACTGTTCCTTTCCCATCCTCCAGAGAACCCT | + |
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Preference number: 1 (lower is better) Translates to: VHGQQAGVRQLLATI*QDMRLFLSHPPENP Trigger: AGGGTTCTCTGGAGGATGGGAAAGGAACAGTCTCATGTCCTGCCAAATAGTAGCCAGCAGTTGCCTTACCCCTGCCTGCTGGCCATGAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
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| 3UTR TCA 90 bp | CCAGTTAATGGCACCCTCCTATTGCAGATCCTCCCCCTCCTCCCGTaGGAACCCAGTGCTTTGCTTCATGTATTCTCCACCAGCACTCAA | + |
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Preference number: 1 (lower is better) Translates to: PVNGTLLLQILPLLP*EPSALLHVFSTSTQ Trigger: TTGAGTGCTGGTGGAGAATACATGAAGCAAAGCACTGGGTTCTCACGGGAGGAGGGGGAGGATCTGCAATAGGAGGGTGCCATTAACTGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
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| 3UTR TCA 90 bp | GGGGATGCCTTAGTCCCTATACTGAGACAGAGCAAGAAAGGCTCTTaGACCCTCAGGTGGGCAAACAAGTGTCCAAGATGTCCTCAGTGG | + |
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Preference number: 1 (lower is better) Translates to: GDALVPILRQSKKGS*TLRWANKCPRCPQW Trigger: CCACTGAGGACATCTTGGACACTTGTTTGCCCACCTGAGGGTTCAAGAGCCTTTCTTGCTCTGTCTCAGTATAGGGACTAAGGCATCCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
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| 3UTR GCA 90 bp | GCTTGGCAGGGCTGGAGAGATGGCACAGCAGTTAAGAGCATTGACTaGTCTTCTAAAGGCCCCCAGTTCAATTCCCAGAAACCACATGGT | + |
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Preference number: 1 (lower is better) Translates to: AWQGWRDGTAVKSID*SSKGPQFNSQKPHG Trigger: ACCATGTGGTTTCTGGGAATTGAACTGGGGGCCTTTAGAAGAGCAGTCAATGCTCTTAACTGCTGTGCCATCTCTCCAGCCCTGCCAAGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
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| 3UTR GCA 90 bp | AACAGGTCTTTCCCACAGATAAACCAGTTAATGGCACCCTCCTATTaGAGATCCTCCCCCTCCTCCCGTGAGAACCCAGTGCTTTGCTTC | + |
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Preference number: 1 (lower is better) Translates to: NRSFPQINQLMAPSY*RSSPSSRENPVLCF Trigger: GAAGCAAAGCACTGGGTTCTCACGGGAGGAGGGGGAGGATCTGCAATAGGAGGGTGCCATTAACTGGTTTATCTGTGGGAAAGACCTGTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
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| 3UTR CCA 90 bp | TGGGAGGCCATAAAAATTGGCAGGGTTAGAGGGTGCCCAGCACCTTaGCACAAGCAAGCACCAGGCAATCACTCACACCTACATAAATAC | + |
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Preference number: 1 (lower is better) Translates to: WEAIKIGRVRGCPAP*HKQAPGNHSHLHKY Trigger: GTATTTATGTAGGTGTGAGTGATTGCCTGGTGCTTGCTTGTGCCAAGGTGCTGGGCACCCTCTAACCCTGCCAATTTTTATGGCCTCCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
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| 3UTR CCA 90 bp | ATATGGTCACTGCAATGTACATGCCCACTACTCCTGACTACTCAGTaGGTGGTCCTTTCCTCTAGTTGCCAGTCAAGATCCTCAGGAGCT | + |
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Preference number: 1 (lower is better) Translates to: IWSLQCTCPLLLTTQ*VVLSSSCQSRSSGA Trigger: AGCTCCTGAGGATCTTGACTGGCAACTAGAGGAAAGGACCACCCACTGAGTAGTCAGGAGTAGTGGGCATGTACATTGCAGTGACCATAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
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| 3UTR CCA 90 bp | ACACTTCTGTCCAAGGCTGCAATTCTCCAGCAGAAACAAGCTACTTaGCACAACACATGCTGGAGGCACAGATGGGTGTCTGGCTTCTTT | + |
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Preference number: 1 (lower is better) Translates to: TLLSKAAILQQKQAT*HNTCWRHRWVSGFF Trigger: AAAGAAGCCAGACACCCATCTGTGCCTCCAGCATGTGTTGTGCCAAGTAGCTTGTTTCTGCTGGAGAATTGCAGCCTTGGACAGAAGTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
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| 3UTR CCA 90 bp | CACATAGCAGCTCACTCCTATCCCAGAGGATATAAGACCCTCTTCTaGTCTCCTAGGGAACCAGGCATGCATATGGTGCACAGATATACA | + |
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Preference number: 1 (lower is better) Translates to: HIAAHSYPRGYKTLF*SPREPGMHMVHRYT Trigger: TGTATATCTGTGCACCATATGCATGCCTGGTTCCCTAGGAGACCAGAAGAGGGTCTTATATCCTCTGGGATAGGAGTGAGCTGCTATGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
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| 3UTR GCA 90 bp | GGACTACAGAGAGAAAAAGCTCACCCATGTGAGGTATGGGTTAGGTaGTATTCTCCCACCACATTACCATTCACAAGTTGTTCCTGGCTG | + |
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Preference number: 1 (lower is better) Translates to: GLQREKAHPCEVWVR*YSPTTLPFTSCSWL Trigger: CAGCCAGGAACAACTTGTGAATGGTAATGTGGTGGGAGAATAGCACCTAACCCATACCTCACATGGGTGAGCTTTTTCTCTCTGTAGTCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
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| 3UTR TCA 90 bp | AGGTCAGTATTATCACCCCATTTGACAGATGGGGAACTGAGGCATTaGAAGGAAAGACTTGCCCAAGGTCAGCCATTAAGACCAAGTAGG | + |
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Preference number: 1 (lower is better) Translates to: RSVLSPHLTDGELRH*KERLAQGQPLRPSR Trigger: CCTACTTGGTCTTAATGGCTGACCTTGGGCAAGTCTTTCCTTTCAATGCCTCAGTTCCCCATCTGTCAAATGGGGTGATAATACTGACCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
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| 3UTR GCA 90 bp | CTCTTTAGAGGGAAGATAGCTCTAGGAAACACTTCTGTCCAAGGCTaGAATTCTCCAGCAGAAACAAGCTACTTGGCACAACACATGCTG | + |
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Preference number: 1 (lower is better) Translates to: LFRGKIALGNTSVQG*NSPAETSYLAQHML Trigger: CAGCATGTGTTGTGCCAAGTAGCTTGTTTCTGCTGGAGAATTGCAGCCTTGGACAGAAGTGTTTCCTAGAGCTATCTTCCCTCTAAAGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
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| 3UTR GCA 90 bp | CAAGGTCAGCCATTAAGACCAAGTAGGGAGGCTAGCACAGAAGTATaGACTAGAAAATCTCACTTTCAGCCATTTCACTGCAGCCAGATG | + |
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Preference number: 1 (lower is better) Translates to: QGQPLRPSREASTEV*TRKSHFQPFHCSQM Trigger: CATCTGGCTGCAGTGAAATGGCTGAAAGTGAGATTTTCTAGTGCATACTTCTGTGCTAGCCTCCCTACTTGGTCTTAATGGCTGACCTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
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| 3UTR TCA 90 bp | AATACAGCTCAGTGGTTGAGCACTTGTCTAAAATGTACAAGGCCCTaGGTTCAATTCTCTCCTACCCACCCACACAAACAGGAATGCACA | + |
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Preference number: 1 (lower is better) Translates to: NTAQWLSTCLKCTRP*VQFSPTHPHKQECT Trigger: TGTGCATTCCTGTTTGTGTGGGTGGGTAGGAGAGAATTGAACTCAGGGCCTTGTACATTTTAGACAAGTGCTCAACCACTGAGCTGTATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
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| 3UTR CCA 90 bp | GACAACTACGGACTACAGAGAGAAAAAGCTCACCCATGTGAGGTATaGGTTAGGTGCTATTCTCCCACCACATTACCATTCACAAGTTGT | + |
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Preference number: 1 (lower is better) Translates to: DNYGLQREKAHPCEV*VRCYSPTTLPFTSC Trigger: ACAACTTGTGAATGGTAATGTGGTGGGAGAATAGCACCTAACCCATACCTCACATGGGTGAGCTTTTTCTCTCTGTAGTCCGTAGTTGTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
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| 3UTR CCA 90 bp | CAGCAGAAACAAGCTACTTGGCACAACACATGCTGGAGGCACAGATaGGTGTCTGGCTTCTTTACACTGAGTGTTGAAGATAATACTAGA | + |
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Preference number: 1 (lower is better) Translates to: QQKQATWHNTCWRHR*VSGFFTLSVEDNTR Trigger: TCTAGTATTATCTTCAACACTCAGTGTAAAGAAGCCAGACACCCATCTGTGCCTCCAGCATGTGTTGTGCCAAGTAGCTTGTTTCTGCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
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| 3UTR CCA 90 bp | CATGAAGAGTTCAGTGGACGACCTGTCCTAGGTCAGCCTGGAAAATaGAAGCAACAATATCAATCCACACTACCAAGACAATCAGCACAA | + |
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Preference number: 1 (lower is better) Translates to: HEEFSGRPVLGQPGK*KQQYQSTLPRQSAQ Trigger: TTGTGCTGATTGTCTTGGTAGTGTGGATTGATATTGTTGCTTCCATTTTCCAGGCTGACCTAGGACAGGTCGTCCACTGAACTCTTCATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
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| 3UTR TCA 90 bp | CAAACAAGTGTCCAAGATGTCCTCAGTGGGTCAGATGGTATACACTaGAAAGAGGTGACAGATTCCACACACAGTGAACTGAAAAGAAGC | + |
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Preference number: 1 (lower is better) Translates to: QTSVQDVLSGSDGIH*KEVTDSTHSELKRS Trigger: GCTTCTTTTCAGTTCACTGTGTGTGGAATCTGTCACCTCTTTTCAGTGTATACCATCTGACCCACTGAGGACATCTTGGACACTTGTTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
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| 3UTR CCA 90 bp | TCTGGAATTAAGGCTACTTCAGCGTTTATTCTTTTTCCTCAGCGTTaGAGCTGGGACAAGACTGCTCAGCTCCAAACTCTGTTATTTCCT | + |
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Preference number: 1 (lower is better) Translates to: SGIKATSAFILFPQR*SWDKTAQLQTLLFP Trigger: AGGAAATAACAGAGTTTGGAGCTGAGCAGTCTTGTCCCAGCTCCAACGCTGAGGAAAAAGAATAAACGCTGAAGTAGCCTTAATTCCAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
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| 3UTR TCA 90 bp | ACAACACATGCTGGAGGCACAGATGGGTGTCTGGCTTCTTTACACTaGGTGTTGAAGATAATACTAGAATCCCGGTTCCCTATTTCTATA | + |
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Preference number: 1 (lower is better) Translates to: TTHAGGTDGCLASLH*VLKIILESRFPISI Trigger: TATAGAAATAGGGAACCGGGATTCTAGTATTATCTTCAACACTCAGTGTAAAGAAGCCAGACACCCATCTGTGCCTCCAGCATGTGTTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
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| 3UTR TCA 90 bp | TTCACAGCAGCCAGTACAGAGCTCTATACACAAGCACTCAACGGATaGTACAGCAACAATGTTCACCAGGGACACTCTATGACTTTAATA | + |
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Preference number: 1 (lower is better) Translates to: FTAASTELYTQALNG*YSNNVHQGHSMTLI Trigger: TATTAAAGTCATAGAGTGTCCCTGGTGAACATTGTTGCTGTATCATCCGTTGAGTGCTTGTGTATAGAGCTCTGTACTGGCTGCTGTGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
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| 3UTR CCA 90 bp | CAACACACTGTTGAGGGCTGCTGCTCATCTGGAGTAAACCAAGGCTaGACAAACCACCTTAGTGCCATTTTGAAAATTAAGTTGCATTTT | + |
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Preference number: 1 (lower is better) Translates to: QHTVEGCCSSGVNQG*TNHLSAILKIKLHF Trigger: AAAATGCAACTTAATTTTCAAAATGGCACTAAGGTGGTTTGTCCAGCCTTGGTTTACTCCAGATGAGCAGCAGCCCTCAACAGTGTGTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
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| 3UTR GCA 90 bp | TTCAGCGTTTATTCTTTTTCCTCAGCGTTGGAGCTGGGACAAGACTaGTCAGCTCCAAACTCTGTTATTTCCTTACTTTTAGTCCTGATT | + |
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Preference number: 1 (lower is better) Translates to: FSVYSFSSALELGQD*SAPNSVISLLLVLI Trigger: AATCAGGACTAAAAGTAAGGAAATAACAGAGTTTGGAGCTGAGCAGTCTTGTCCCAGCTCCAACGCTGAGGAAAAAGAATAAACGCTGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
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| 3UTR GCA 90 bp | TGTCTGTCTACCATGTCACTGCAGTACAAGCTGCCTTCTCAACGGTaGAGTATAATTGTTGGCATAATTTATTCAAGAACACAGAACTCA | + |
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Preference number: 1 (lower is better) Translates to: CLSTMSLQYKLPSQR*SIIVGIIYSRTQNS Trigger: TGAGTTCTGTGTTCTTGAATAAATTATGCCAACAATTATACTGCACCGTTGAGAAGGCAGCTTGTACTGCAGTGACATGGTAGACAGACA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
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| 3UTR TCA 90 bp | TCAGATTCAGTCTCTCTGGAAACTTCCCTAACAAACAAAACACTCTaGACTAGGAATACAGCTCAGTGGTTGAGCACTTGTCTAAAATGT | + |
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Preference number: 1 (lower is better) Translates to: SDSVSLETSLTNKTL*TRNTAQWLSTCLKC Trigger: ACATTTTAGACAAGTGCTCAACCACTGAGCTGTATTCCTAGTTCAGAGTGTTTTGTTTGTTAGGGAAGTTTCCAGAGAGACTGAATCTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
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| 3UTR GCA 90 bp | CGTATCTGCACTCTTGGTAATGACCACATTTCTAGCTTTATTTTCTaGAATATTCCACATGGCCAGTTAACTCAGTTCATCCAAGACAAC | + |
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Preference number: 1 (lower is better) Translates to: RICTLGNDHISSFIF*NIPHGQLTQFIQDN Trigger: GTTGTCTTGGATGAACTGAGTTAACTGGCCATGTGGAATATTGCAGAAAATAAAGCTAGAAATGTGGTCATTACCAAGAGTGCAGATACG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
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| 3UTR GCA 90 bp | TCAGGATCAAATCCTAGCGTTACTGCAAACAGGAAAACACTGGCTTaGATCTTCTTCCTGTTGTCATACAAGGAAACTATCTTTTTAGTT | + |
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Preference number: 1 (lower is better) Translates to: SGSNPSVTANRKTLA*IFFLLSYKETIFLV Trigger: AACTAAAAAGATAGTTTCCTTGTATGACAACAGGAAGAAGATGCAAGCCAGTGTTTTCCTGTTTGCAGTAACGCTAGGATTTGATCCTGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
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| 3UTR-3UTR TCA 90 bp | TGGCAGGACATGAGACTGTTCCTTTCCCATCCTCCAGAGAACCCTCTAGGACCCGGGCAGGCAGATCTCTaGGTTAGAGGCCAGCCTGGT | + |
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Preference number: 2 (lower is better) Translates to: WQDMRLFLSHPPENPLGPGQADL*VRGQPG Trigger: ACCAGGCTGGCCTCTAACTCAGAGATCTGCCTGCCC...GGGTCCTAGAGGGTTCTCTGGAGGATGGGAAAGGAACAGTCTCATGTCCTGCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
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| 3UTR CAA 90 bp | GGTTCATGGCCAGCAGGCAGGGGTAAGGCAACTGCTGGCTACTATTaGGCAGGACATGAGACTGTTCCTTTCCCATCCTCCAGAGAACCC | + |
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Preference number: 2 (lower is better) Translates to: GSWPAGRGKATAGYY*AGHETVPFPSSREP Trigger: GGGTTCTCTGGAGGATGGGAAAGGAACAGTCTCATGTCCTGCCAAATAGTAGCCAGCAGTTGCCTTACCCCTGCCTGCTGGCCATGAACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
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| 3UTR-3UTR GCA 90 bp | TGGCAGGACATGAGACTGTTCCTTTCCCATCCTCCAGAGAACCCTCTAGGACCCCTCCAGAGCAGGATCTaGCCTTCCTTCACCACTGTG | + |
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Preference number: 2 (lower is better) Translates to: WQDMRLFLSHPPENPLGPLQSRI*PSFTTV Trigger: CACAGTGGTGAAGGAAGGGCAGATCCTGCTCTGGAG...GGGTCCTAGAGGGTTCTCTGGAGGATGGGAAAGGAACAGTCTCATGTCCTGCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
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| 3UTR-3UTR CCA 90 bp | CTCTCATTACTATCAACAACCCGGTGGCTAGATGCTCTGGCCCAGACAGCTTTGCCAGCATCTCCCCCGTaGAGCACAGTGATGAGCGCA | + |
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Preference number: 2 (lower is better) Translates to: LSLLSTTRWLDALAQTALPASPP*STVMSA Trigger: TGCGCTCATCACTGTGCTCCACGGGGGAGATGCTGG...CAAAGCTGTCTGGGCCAGAGCATCTAGCCACCGGGTTGTTGATAGTAATGAGAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
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| 3UTR-3UTR GCA 90 bp | AAGGCAACTGCTGGCTACTATTTGGCAGGACATGAGACTGTTCCTTTCCCATCCGGCAGGGTTAGAGGGTaGCCAGCACCTTGGCACAAG | + |
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Preference number: 2 (lower is better) Translates to: KATAGYYLAGHETVPFPSGRVRG*PAPWHK Trigger: CTTGTGCCAAGGTGCTGGGCACCCTCTAACCCTGCC...GGATGGGAAAGGAACAGTCTCATGTCCTGCCAAATAGTAGCCAGCAGTTGCCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
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| 3UTR-3UTR CCA 90 bp | CTCTCATTACTATCAACAACCCGGTGGCTAGATGCTCTGGCCCAGACAGCTTTGCCTCAGCGTTGGAGCTaGGACAAGACTGCTCAGCTC | + |
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Preference number: 2 (lower is better) Translates to: LSLLSTTRWLDALAQTALPQRWS*DKTAQL Trigger: GAGCTGAGCAGTCTTGTCCCAGCTCCAACGCTGAGG...CAAAGCTGTCTGGGCCAGAGCATCTAGCCACCGGGTTGTTGATAGTAATGAGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
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| 3UTR-3UTR CCA 90 bp | TGGCAGGACATGAGACTGTTCCTTTCCCATCCTCCAGAGAACCCTCTAGGACCCAAGACATCAGTTCAGTaGCACAGCACTTGCCTGGCA | + |
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Preference number: 2 (lower is better) Translates to: WQDMRLFLSHPPENPLGPKTSVQ*HSTCLA Trigger: TGCCAGGCAAGTGCTGTGCCACTGAACTGATGTCTT...GGGTCCTAGAGGGTTCTCTGGAGGATGGGAAAGGAACAGTCTCATGTCCTGCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
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| 3UTR-3UTR TCA 90 bp | GGGAAGGGGCAGAAAAAGACATCAGTTCAGTGGCACAGCACTTGCCTGGCATGTATGGCATGGATCTGCTaGTGCCTCTTTGGTACAGGA | + |
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Preference number: 2 (lower is better) Translates to: GKGQKKTSVQWHSTCLACMAWIC*CLFGTG Trigger: TCCTGTACCAAAGAGGCATCAGCAGATCCATGCCAT...ACATGCCAGGCAAGTGCTGTGCCACTGAACTGATGTCTTTTTCTGCCCCTTCCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
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| 3UTR-3UTR CCA 90 bp | AAGGCAACTGCTGGCTACTATTTGGCAGGACATGAGACTGTTCCTTTCCCATCCGGGCTGCTGCTCATCTaGAGTAAACCAAGGCTGGAC | + |
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Preference number: 2 (lower is better) Translates to: KATAGYYLAGHETVPFPSGLLLI*SKPRLD Trigger: GTCCAGCCTTGGTTTACTCCAGATGAGCAGCAGCCC...GGATGGGAAAGGAACAGTCTCATGTCCTGCCAAATAGTAGCCAGCAGTTGCCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
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| 3UTR CAA 90 bp | ATTCAGCTTGGCAGGGCTGGAGAGATGGCACAGCAGTTAAGAGCATaGACTGCTCTTCTAAAGGCCCCCAGTTCAATTCCCAGAAACCAC | + |
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Preference number: 2 (lower is better) Translates to: IQLGRAGEMAQQLRA*TALLKAPSSIPRNH Trigger: GTGGTTTCTGGGAATTGAACTGGGGGCCTTTAGAAGAGCAGTCAATGCTCTTAACTGCTGTGCCATCTCTCCAGCCCTGCCAAGCTGAAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
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| 3UTR CAA 90 bp | TTTGAAGGGTGGGAGGTGGCACCCACTCTTCCAGAGGACCAGGATTaGATTCTCAATACTCACATAGCAGCTCACTCCTATCCCAGAGGA | + |
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Preference number: 2 (lower is better) Translates to: FEGWEVAPTLPEDQD*ILNTHIAAHSYPRG Trigger: TCCTCTGGGATAGGAGTGAGCTGCTATGTGAGTATTGAGAATCAAATCCTGGTCCTCTGGAAGAGTGGGTGCCACCTCCCACCCTTCAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
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| 3UTR-3UTR TCA 90 bp | AAAGATGTTTTGAAGGGTGGGAGGTGGCACCCACTCTTCCAGAGGACCAGGATTAAGCAGCTCAGTAGCTaGCGAAGTCTGGAATTAAGG | + |
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Preference number: 2 (lower is better) Translates to: KDVLKGGRWHPLFQRTRIKQLSS*RSLELR Trigger: CCTTAATTCCAGACTTCGTCAGCTACTGAGCTGCTT...AATCCTGGTCCTCTGGAAGAGTGGGTGCCACCTCCCACCCTTCAAAACATCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
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| 3UTR-3UTR GCA 90 bp | TTGGAGCTGGGACAAGACTGCTCAGCTCCAAACTCTGTTATTTCCTTACTTTTAGGCAGGGTTAGAGGGTaGCCAGCACCTTGGCACAAG | + |
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Preference number: 2 (lower is better) Translates to: LELGQDCSAPNSVISLLLGRVRG*PAPWHK Trigger: CTTGTGCCAAGGTGCTGGGCACCCTCTAACCCTGCC...TAAAAGTAAGGAAATAACAGAGTTTGGAGCTGAGCAGTCTTGTCCCAGCTCCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
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| 3UTR-3UTR GCA 90 bp | ACACTACCAAGACAATCAGCACAAGTCATCCATGAGAATAGGACCTTAACTCCTACTGAGCACCTGAAGTaGAGCAGGGCTGCAGGGCAC | + |
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Preference number: 2 (lower is better) Translates to: TLPRQSAQVIHENRTLTPTEHLK*SRAAGH Trigger: GTGCCCTGCAGCCCTGCTGCACTTCAGGTGCTCAGT...AGGAGTTAAGGTCCTATTCTCATGGATGACTTGTGCTGATTGTCTTGGTAGTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
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| 3UTR-3UTR CCA 90 bp | TGGCAGGACATGAGACTGTTCCTTTCCCATCCTCCAGAGAACCCTCTAGGACCCGGTCAGCCTGGAAAATaGAAGCAACAATATCAATCC | + |
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Preference number: 2 (lower is better) Translates to: WQDMRLFLSHPPENPLGPGQPGK*KQQYQS Trigger: GGATTGATATTGTTGCTTCCATTTTCCAGGCTGACC...GGGTCCTAGAGGGTTCTCTGGAGGATGGGAAAGGAACAGTCTCATGTCCTGCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
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| 3UTR-3UTR TCA 90 bp | AAGGCAACTGCTGGCTACTATTTGGCAGGACATGAGACTGTTCCTTTCCCATCCAACTCACTTAAGAAGTaGAGGGTTAGCCAGGCAGTG | + |
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Preference number: 2 (lower is better) Translates to: KATAGYYLAGHETVPFPSNSLKK*RVSQAV Trigger: CACTGCCTGGCTAACCCTTCACTTCTTAAGTGAGTT...GGATGGGAAAGGAACAGTCTCATGTCCTGCCAAATAGTAGCCAGCAGTTGCCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
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| 3UTR-3UTR TCA 90 bp | GGGAAGGGGCAGAAAAAGACATCAGTTCAGTGGCACAGCACTTGCCTGGCATGTGGAAGTAGTTTGTTGTaGGAGAAGGTTGTGTCAAAA | + |
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Preference number: 2 (lower is better) Translates to: GKGQKKTSVQWHSTCLACGSSLL*EKVVSK Trigger: TTTTGACACAACCTTCTCTCACAACAAACTACTTCC...ACATGCCAGGCAAGTGCTGTGCCACTGAACTGATGTCTTTTTCTGCCCCTTCCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
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| 3UTR-3UTR CCA 90 bp | ACTGAAGTCATCGTCATAATAAAATCTCCCAAAGCAACCAACCCCAAAGATCATCCAGCATCTCCCCCGTaGAGCACAGTGATGAGCGCA | + |
|
Preference number: 2 (lower is better) Translates to: TEVIVIIKSPKATNPKDHPASPP*STVMSA Trigger: TGCGCTCATCACTGTGCTCCACGGGGGAGATGCTGG...ATGATCTTTGGGGTTGGTTGCTTTGGGAGATTTTATTATGACGATGACTTCAGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 ENSMUST00000122182.2 |
||
| 3UTR-3UTR CCA 90 bp | CAAGAAACTGAAGTCATCGTCATAATAAAATCTCCCAAAGCAACCAACCCCAAACCAGCATCTCCCCCGTaGAGCACAGTGATGAGCGCA | + |
|
Preference number: 2 (lower is better) Translates to: QETEVIVIIKSPKATNPKPASPP*STVMSA Trigger: TGCGCTCATCACTGTGCTCCACGGGGGAGATGCTGG...TTTGGGGTTGGTTGCTTTGGGAGATTTTATTATGACGATGACTTCAGTTTCTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 ENSMUST00000122182.2 |
||
| 3UTR-3UTR GCA 90 bp | GCGTTTATTCTTTTTCCTCAGCGTTGGAGCTGGGACAAGACTGCTCAGCTCCAAATTAAAGAGCATCACTaGTGCAAGGACGTAAAAGCC | + |
|
Preference number: 2 (lower is better) Translates to: AFILFPQRWSWDKTAQLQIKEHH*CKDVKA Trigger: GGCTTTTACGTCCTTGCAGCAGTGATGCTCTTTAAT...TTGGAGCTGAGCAGTCTTGTCCCAGCTCCAACGCTGAGGAAAAAGAATAAACGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
||
| 3UTR-3UTR CCA 90 bp | ACACTACCAAGACAATCAGCACAAGTCATCCATGAGAATAGGACCTTAACTCCTAAGCCAGTGACACTGTaGCTAGTGGCTCCTCTCCAA | + |
|
Preference number: 2 (lower is better) Translates to: TLPRQSAQVIHENRTLTPKPVTL*LVAPLQ Trigger: TTGGAGAGGAGCCACTAGCCACAGTGTCACTGGCTT...AGGAGTTAAGGTCCTATTCTCATGGATGACTTGTGCTGATTGTCTTGGTAGTGT 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
||
| 3UTR-3UTR GCA 90 bp | GCGTTTATTCTTTTTCCTCAGCGTTGGAGCTGGGACAAGACTGCTCAGCTCCAAATCCTATTATCTTCCTaGACTACAGCTTACAGACTC | + |
|
Preference number: 2 (lower is better) Translates to: AFILFPQRWSWDKTAQLQILLSS*TTAYRL Trigger: GAGTCTGTAAGCTGTAGTGCAGGAAGATAATAGGAT...TTGGAGCTGAGCAGTCTTGTCCCAGCTCCAACGCTGAGGAAAAAGAATAAACGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
||
| 3UTR-3UTR CCA 90 bp | AAGATAGCTCTAGGAAACACTTCTGTCCAAGGCTGCAATTCTCCAGCAGAAACATATCTGGCTCATCTGTaGACTGAAGCACTCCATCCA | + |
|
Preference number: 2 (lower is better) Translates to: KIALGNTSVQGCNSPAETYLAHL*TEALHP Trigger: TGGATGGAGTGCTTCAGTCCACAGATGAGCCAGATA...TGTTTCTGCTGGAGAATTGCAGCCTTGGACAGAAGTGTTTCCTAGAGCTATCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
||
| 3UTR-3UTR CCA 90 bp | AAGATAGCTCTAGGAAACACTTCTGTCCAAGGCTGCAATTCTCCAGCAGAAACAGCACAGATGGGTGTCTaGCTTCTTTACACTGAGTGT | + |
|
Preference number: 2 (lower is better) Translates to: KIALGNTSVQGCNSPAETAQMGV*LLYTEC Trigger: ACACTCAGTGTAAAGAAGCCAGACACCCATCTGTGC...TGTTTCTGCTGGAGAATTGCAGCCTTGGACAGAAGTGTTTCCTAGAGCTATCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
||
| 3UTR-3UTR CCA 90 bp | CACAGTGAACTGAAAAGAAGCCTTGAGGACCAATGCTCAATTCTGAAATGGTATTGGCACAACACATGCTaGAGGCACAGATGGGTGTCT | + |
|
Preference number: 2 (lower is better) Translates to: HSELKRSLEDQCSILKWYWHNTC*RHRWVS Trigger: AGACACCCATCTGTGCCTCCAGCATGTGTTGTGCCA...ATACCATTTCAGAATTGAGCATTGGTCCTCAAGGCTTCTTTTCAGTTCACTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
||
| 3UTR-3UTR GCA 90 bp | AAGATAGCTCTAGGAAACACTTCTGTCCAAGGCTGCAATTCTCCAGCAGAAACAATTAAAGAGCATCACTaGTGCAAGGACGTAAAAGCC | + |
|
Preference number: 2 (lower is better) Translates to: KIALGNTSVQGCNSPAETIKEHH*CKDVKA Trigger: GGCTTTTACGTCCTTGCAGCAGTGATGCTCTTTAAT...TGTTTCTGCTGGAGAATTGCAGCCTTGGACAGAAGTGTTTCCTAGAGCTATCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
||
| 3UTR-3UTR CCA 90 bp | CACAGTGAACTGAAAAGAAGCCTTGAGGACCAATGCTCAATTCTGAAATGGTATAGACTGTTTCTTATCTaGGAGGGGCGTCATGCACAA | + |
|
Preference number: 2 (lower is better) Translates to: HSELKRSLEDQCSILKWYRLFLI*EGRHAQ Trigger: TTGTGCATGACGCCCCTCCCAGATAAGAAACAGTCT...ATACCATTTCAGAATTGAGCATTGGTCCTCAAGGCTTCTTTTCAGTTCACTGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
||
| 3UTR-3UTR TCA 90 bp | GAAGTCATCGTCATAATAAAATCTCCCAAAGCAACCAACCCCAAAGATCATGACAGGAAAAGATCAGGGTaGAAGAGAACACTATGGGAA | + |
|
Preference number: 2 (lower is better) Translates to: EVIVIIKSPKATNPKDHDRKRSG*KRTLWE Trigger: TTCCCATAGTGTTCTCTTTCACCCTGATCTTTTCCT...GTCATGATCTTTGGGGTTGGTTGCTTTGGGAGATTTTATTATGACGATGACTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 ENSMUST00000122182.2 |
||
| 3UTR-3UTR TCA 90 bp | ACACTACCAAGACAATCAGCACAAGTCATCCATGAGAATAGGACCTTAACTCCTGTCAGAATGAGAACCTaGAAACCAGACTGTTTCTTA | + |
|
Preference number: 2 (lower is better) Translates to: TLPRQSAQVIHENRTLTPVRMRT*KPDCFL Trigger: TAAGAAACAGTCTGGTTTTCAGGTTCTCATTCTGAC...AGGAGTTAAGGTCCTATTCTCATGGATGACTTGTGCTGATTGTCTTGGTAGTGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
||
| 3UTR-3UTR GCA 90 bp | GAAGATAGCTCTAGGAAACACTTCTGTCCAAGGCTGCAATTCTCCAGCAGAAACTATCATTGTTATGGTTaGCCAAAGGCTAAGATTTTG | + |
|
Preference number: 2 (lower is better) Translates to: EDSSRKHFCPRLQFSSRNYHCYG*PKAKIL Trigger: CAAAATCTTAGCCTTTGGGCAACCATAACAATGATA...GTTTCTGCTGGAGAATTGCAGCCTTGGACAGAAGTGTTTCCTAGAGCTATCTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
||
| 3UTR-3UTR TCA 90 bp | GAAACTGAAGTCATCGTCATAATAAAATCTCCCAAAGCAACCAACCCCAAAGATAGGAAAAGATCAGGGTaGAAGAGAACACTATGGGAA | + |
|
Preference number: 2 (lower is better) Translates to: ETEVIVIIKSPKATNPKDRKRSG*KRTLWE Trigger: TTCCCATAGTGTTCTCTTTCACCCTGATCTTTTCCT...ATCTTTGGGGTTGGTTGCTTTGGGAGATTTTATTATGACGATGACTTCAGTTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 ENSMUST00000122182.2 |
||
| 3UTR TCA 72 bp | GGCACCCTCCTATTGCAGATCCTCCCCCTCCTCCCGTaGGAACCCAGTGCTTTGCTTCATGTATTCTCCACC | + |
|
Preference number: 3 (lower is better) Translates to: GTLLLQILPLLP*EPSALLHVFST Trigger: GGTGGAGAATACATGAAGCAAAGCACTGGGTTCTCACGGGAGGAGGGGGAGGATCTGCAATAGGAGGGTGCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
||
| 3UTR CCA 72 bp | AACCAGGGGTCTCTGAAAGCCCTTTCCGTGAGAATGTaGGTTCATGGCCAGCAGGCAGGGGTAAGGCAACTG | + |
|
Preference number: 3 (lower is better) Translates to: NQGSLKALSVRM*VHGQQAGVRQL Trigger: CAGTTGCCTTACCCCTGCCTGCTGGCCATGAACCCACATTCTCACGGAAAGGGCTTTCAGAGACCCCTGGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
||
| 3UTR GCA 72 bp | CTTTGGGAGGCCATAAAAATTGGCAGGGTTAGAGGGTaGCCAGCACCTTGGCACAAGCAAGCACCAGGCAAT | + |
|
Preference number: 3 (lower is better) Translates to: LWEAIKIGRVRG*PAPWHKQAPGN Trigger: ATTGCCTGGTGCTTGCTTGTGCCAAGGTGCTGGGCACCCTCTAACCCTGCCAATTTTTATGGCCTCCCAAAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
||
| 3UTR GCA 72 bp | TTCCCACAGATAAACCAGTTAATGGCACCCTCCTATTaGAGATCCTCCCCCTCCTCCCGTGAGAACCCAGTG | + |
|
Preference number: 3 (lower is better) Translates to: FPQINQLMAPSY*RSSPSSRENPV Trigger: CACTGGGTTCTCACGGGAGGAGGGGGAGGATCTGCAATAGGAGGGTGCCATTAACTGGTTTATCTGTGGGAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
||
| 3UTR CCA 72 bp | CAGCAGGCAGGGGTAAGGCAACTGCTGGCTACTATTTaGCAGGACATGAGACTGTTCCTTTCCCATCCTCCA | + |
|
Preference number: 3 (lower is better) Translates to: QQAGVRQLLATI*QDMRLFLSHPP Trigger: TGGAGGATGGGAAAGGAACAGTCTCATGTCCTGCCAAATAGTAGCCAGCAGTTGCCTTACCCCTGCCTGCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
||
| 3UTR-3UTR CAA 90 bp | TGGCAGGACATGAGACTGTTCCTTTCCCATCCTCCAGAGAACCCTCTAGGACCCGTTCCCAAACAGGCCTaGAACATACAGTACCCCTGT | + |
|
Preference number: 3 (lower is better) Translates to: WQDMRLFLSHPPENPLGPVPKQA*NIQYPC Trigger: ACAGGGGTACTGTATGTTCAAGGCCTGTTTGGGAAC...GGGTCCTAGAGGGTTCTCTGGAGGATGGGAAAGGAACAGTCTCATGTCCTGCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
||
| 3UTR GCA 72 bp | GGGCAGAAAAAGACATCAGTTCAGTGGCACAGCACTTaGCTGGCATGTCTAAGCTCAAGTCCCAGTACCACA | + |
|
Preference number: 3 (lower is better) Translates to: GQKKTSVQWHST*LACLSSSPSTT Trigger: TGTGGTACTGGGACTTGAGCTTAGACATGCCAGGCAAGTGCTGTGCCACTGAACTGATGTCTTTTTCTGCCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
||
| 3UTR CCA 72 bp | CTCCAGCAGAAACAAGCTACTTGGCACAACACATGCTaGAGGCACAGATGGGTGTCTGGCTTCTTTACACTG | + |
|
Preference number: 3 (lower is better) Translates to: LQQKQATWHNTC*RHRWVSGFFTL Trigger: CAGTGTAAAGAAGCCAGACACCCATCTGTGCCTCCAGCATGTGTTGTGCCAAGTAGCTTGTTTCTGCTGGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
||
| 3UTR CCA 72 bp | TCCAAGGCTGCAATTCTCCAGCAGAAACAAGCTACTTaGCACAACACATGCTGGAGGCACAGATGGGTGTCT | + |
|
Preference number: 3 (lower is better) Translates to: SKAAILQQKQAT*HNTCWRHRWVS Trigger: AGACACCCATCTGTGCCTCCAGCATGTGTTGTGCCAAGTAGCTTGTTTCTGCTGGAGAATTGCAGCCTTGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
||
| 3UTR CCA 72 bp | TGTAGACTCCTAGGCACAATTCCCTCTACTACTGCCTaGCATTCCTCCTGTGACACCCAAAGGACAGCAACT | + |
|
Preference number: 3 (lower is better) Translates to: CRLLGTIPSTTA*HSSCDTQRTAT Trigger: AGTTGCTGTCCTTTGGGTGTCACAGGAGGAATGCCAGGCAGTAGTAGAGGGAATTGTGCCTAGGAGTCTACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
||
| 3UTR-3UTR CAA 90 bp | GGGAAGGGGCAGAAAAAGACATCAGTTCAGTGGCACAGCACTTGCCTGGCATGTTGGTACAGGAATGCTTaGGGAGGCCATAAAAATTGG | + |
|
Preference number: 3 (lower is better) Translates to: GKGQKKTSVQWHSTCLACWYRNA*GGHKNW Trigger: CCAATTTTTATGGCCTCCCAAAGCATTCCTGTACCA...ACATGCCAGGCAAGTGCTGTGCCACTGAACTGATGTCTTTTTCTGCCCCTTCCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
||
| 3UTR TCA 72 bp | AAAATAATGGCACGGAAGGGAATGGCATGGATCTGCTaGTGCCTCTTTGGTACAGGAATGCTTTGGGAGGCC | + |
|
Preference number: 3 (lower is better) Translates to: KIMARKGMAWIC*CLFGTGMLWEA Trigger: GGCCTCCCAAAGCATTCCTGTACCAAAGAGGCATCAGCAGATCCATGCCATTCCCTTCCGTGCCATTATTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
||
| 3UTR TCA 72 bp | CAGACTCAAGTGGAGAGGACAGGAACATTAATCCTCTaGGGACTTGGTGGCAAATCCACAAGCCATGAGGCA | + |
|
Preference number: 3 (lower is better) Translates to: QTQVERTGTLIL*GLGGKSTSHEA Trigger: TGCCTCATGGCTTGTGGATTTGCCACCAAGTCCTCAGAGGATTAATGTTCCTGTCCTCTCCACTTGAGTCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
||
| 3UTR GCA 72 bp | CCAGATGAGTTCAATCAACACACTGTTGAGGGCTGCTaGTCATCTGGAGTAAACCAAGGCTGGACAAACCAC | + |
|
Preference number: 3 (lower is better) Translates to: PDEFNQHTVEGC*SSGVNQGWTNH Trigger: GTGGTTTGTCCAGCCTTGGTTTACTCCAGATGAGCAGCAGCCCTCAACAGTGTGTTGATTGAACTCATCTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
||
| 3UTR GCA 72 bp | CAGCCAGATGAGTTCAATCAACACACTGTTGAGGGCTaGTGCTCATCTGGAGTAAACCAAGGCTGGACAAAC | + |
|
Preference number: 3 (lower is better) Translates to: QPDEFNQHTVEG*CSSGVNQGWTN Trigger: GTTTGTCCAGCCTTGGTTTACTCCAGATGAGCAGCAGCCCTCAACAGTGTGTTGATTGAACTCATCTGGCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
||
| 3UTR-3UTR CAA 90 bp | TGGCACAGCACTTGCCTGGCATGTCTAAGCTCAAGTCCCAGTACCACAAAATTAGTTCCCAAACAGGCCTaGAACATACAGTACCCCTGT | + |
|
Preference number: 3 (lower is better) Translates to: WHSTCLACLSSSPSTTKLVPKQA*NIQYPC Trigger: ACAGGGGTACTGTATGTTCAAGGCCTGTTTGGGAAC...TAATTTTGTGGTACTGGGACTTGAGCTTAGACATGCCAGGCAAGTGCTGTGCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
||
| 3UTR TCA 72 bp | TTGAGTCAGGGTCTCACTAAGTTCCCAAACAGGCCTTaGACATACAGTACCCCTGTATCAGTCTGGGACTGT | + |
|
Preference number: 3 (lower is better) Translates to: LSQGLTKFPNRP*TYSTPVSVWDC Trigger: ACAGTCCCAGACTGATACAGGGGTACTGTATGTTCAAGGCCTGTTTGGGAACTTAGTGAGACCCTGACTCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
||
| 3UTR TCA 72 bp | GCTGGAGGCACAGATGGGTGTCTGGCTTCTTTACACTaGGTGTTGAAGATAATACTAGAATCCCGGTTCCCT | + |
|
Preference number: 3 (lower is better) Translates to: AGGTDGCLASLH*VLKIILESRFP Trigger: AGGGAACCGGGATTCTAGTATTATCTTCAACACTCAGTGTAAAGAAGCCAGACACCCATCTGTGCCTCCAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
||
| 3UTR GCA 72 bp | ATTCTCCAGCAGAAACAAGCTACTTGGCACAACACATaGTGGAGGCACAGATGGGTGTCTGGCTTCTTTACA | + |
|
Preference number: 3 (lower is better) Translates to: ILQQKQATWHNT*WRHRWVSGFFT Trigger: TGTAAAGAAGCCAGACACCCATCTGTGCCTCCAGCATGTGTTGTGCCAAGTAGCTTGTTTCTGCTGGAGAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
||
| 3UTR GCA 72 bp | GAAAACCAGACTGTTTCTTATCTGGGAGGGGCGTCATaGACAATGAGGAGCCAGAACACATTATTCCTGTGG | + |
|
Preference number: 3 (lower is better) Translates to: ENQTVSYLGGAS*TMRSQNTLFLW Trigger: CCACAGGAATAATGTGTTCTGGCTCCTCATTGTGCATGACGCCCCTCCCAGATAAGAAACAGTCTGGTTTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
||
| 3UTR CCA 72 bp | ACGGAAGGGAATGGCATGGATCTGCTGATGCCTCTTTaGTACAGGAATGCTTTGGGAGGCCATAAAAATTGG | + |
|
Preference number: 3 (lower is better) Translates to: TEGNGMDLLMPL*YRNALGGHKNW Trigger: CCAATTTTTATGGCCTCCCAAAGCATTCCTGTACCAAAGAGGCATCAGCAGATCCATGCCATTCCCTTCCGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
||
| 3UTR CCA 72 bp | AAGGCTACTTCAGCGTTTATTCTTTTTCCTCAGCGTTaGAGCTGGGACAAGACTGCTCAGCTCCAAACTCTG | + |
|
Preference number: 3 (lower is better) Translates to: KATSAFILFPQR*SWDKTAQLQTL Trigger: CAGAGTTTGGAGCTGAGCAGTCTTGTCCCAGCTCCAACGCTGAGGAAAAAGAATAAACGCTGAAGTAGCCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
||
| 3UTR CCA 72 bp | CAAGCTACTTGGCACAACACATGCTGGAGGCACAGATaGGTGTCTGGCTTCTTTACACTGAGTGTTGAAGAT | + |
|
Preference number: 3 (lower is better) Translates to: QATWHNTCWRHR*VSGFFTLSVED Trigger: ATCTTCAACACTCAGTGTAAAGAAGCCAGACACCCATCTGTGCCTCCAGCATGTGTTGTGCCAAGTAGCTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
||
| 3UTR-3UTR CAA 90 bp | TGGCAGGACATGAGACTGTTCCTTTCCCATCCTCCAGAGAACCCTCTAGGACCCTCACTTATCCAGCATTaGATATTGCCTCTAACATCT | + |
|
Preference number: 3 (lower is better) Translates to: WQDMRLFLSHPPENPLGPSLIQH*ILPLTS Trigger: AGATGTTAGAGGCAATATCAAATGCTGGATAAGTGA...GGGTCCTAGAGGGTTCTCTGGAGGATGGGAAAGGAACAGTCTCATGTCCTGCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
||
| 3UTR TCA 72 bp | AATCCTCTGAGGACTTGGTGGCAAATCCACAAGCCATaGGGCAGTAAATTAAAGAGCATCACTGCTGCAAGG | + |
|
Preference number: 3 (lower is better) Translates to: NPLRTWWQIHKP*GSKLKSITAAR Trigger: CCTTGCAGCAGTGATGCTCTTTAATTTACTGCCTCATGGCTTGTGGATTTGCCACCAAGTCCTCAGAGGATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
||
| 3UTR TCA 72 bp | AGACTGTTTCTTATCTGGGAGGGGCGTCATGCACAATaGGGAGCCAGAACACATTATTCCTGTGGAAGGTTT | + |
|
Preference number: 3 (lower is better) Translates to: RLFLIWEGRHAQ*GARTHYSCGRF Trigger: AAACCTTCCACAGGAATAATGTGTTCTGGCTCCTCATTGTGCATGACGCCCCTCCCAGATAAGAAACAGTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
||
| 3UTR TCA 72 bp | GCCAGTACAGAGCTCTATACACAAGCACTCAACGGATaGTACAGCAACAATGTTCACCAGGGACACTCTATG | + |
|
Preference number: 3 (lower is better) Translates to: ASTELYTQALNG*YSNNVHQGHSM Trigger: CATAGAGTGTCCCTGGTGAACATTGTTGCTGTATCATCCGTTGAGTGCTTGTGTATAGAGCTCTGTACTGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
||
| 3UTR TCA 72 bp | TTAGTCCCTATACTGAGACAGAGCAAGAAAGGCTCTTaGACCCTCAGGTGGGCAAACAAGTGTCCAAGATGT | + |
|
Preference number: 3 (lower is better) Translates to: LVPILRQSKKGS*TLRWANKCPRC Trigger: ACATCTTGGACACTTGTTTGCCCACCTGAGGGTTCAAGAGCCTTTCTTGCTCTGTCTCAGTATAGGGACTAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
||
| 3UTR TCA 72 bp | ACTGTCTCACTTCCATTTAGACCTGGCTACAAGGTGTaGCCTGCTTCCTACACAAAATGGTACAGTGCTGAG | + |
|
Preference number: 3 (lower is better) Translates to: TVSLPFRPGYKV*PASYTKWYSAE Trigger: CTCAGCACTGTACCATTTTGTGTAGGAAGCAGGTCACACCTTGTAGCCAGGTCTAAATGGAAGTGAGACAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
||
| 3UTR GCA 72 bp | TCTTCTGGTCTCCTAGGGAACCAGGCATGCATATGGTaGACAGATATACATGCAGGCAGAAATCCCATATAC | + |
|
Preference number: 3 (lower is better) Translates to: SSGLLGNQACIW*TDIHAGRNPIY Trigger: GTATATGGGATTTCTGCCTGCATGTATATCTGTGCACCATATGCATGCCTGGTTCCCTAGGAGACCAGAAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
||
| 3UTR GCA 72 bp | ATAAGACCCTCTTCTGGTCTCCTAGGGAACCAGGCATaGATATGGTGCACAGATATACATGCAGGCAGAAAT | + |
|
Preference number: 3 (lower is better) Translates to: IRPSSGLLGNQA*IWCTDIHAGRN Trigger: ATTTCTGCCTGCATGTATATCTGTGCACCATATGCATGCCTGGTTCCCTAGGAGACCAGAAGAGGGTCTTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
||
| 3UTR CCA 72 bp | GGACTACAGAGAGAAAAAGCTCACCCATGTGAGGTATaGGTTAGGTGCTATTCTCCCACCACATTACCATTC | + |
|
Preference number: 3 (lower is better) Translates to: GLQREKAHPCEV*VRCYSPTTLPF Trigger: GAATGGTAATGTGGTGGGAGAATAGCACCTAACCCATACCTCACATGGGTGAGCTTTTTCTCTCTGTAGTCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
||
| 3UTR TCA 72 bp | AGTTCACCTCTGCTTTCGTGTAAAGCTAGCAAAACTTaGGCATTAAAGGGTGAAGCCGGCAAGAAACAGCCA | + |
|
Preference number: 3 (lower is better) Translates to: SSPLLSCKASKT*ALKGEAGKKQP Trigger: TGGCTGTTTCTTGCCGGCTTCACCCTTTAATGCTCAAGTTTTGCTAGCTTTACACGAAAGCAGAGGTGAACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
||
| 3UTR GCA 72 bp | GTTCAATTCTCTCCTACCCACCCACACAAACAGGAATaGACACATCCCCTCATAATCCCAGTATTTAAGGCT | + |
|
Preference number: 3 (lower is better) Translates to: VQFSPTHPHKQE*THPLIIPVFKA Trigger: AGCCTTAAATACTGGGATTATGAGGGGATGTGTGCATTCCTGTTTGTGTGGGTGGGTAGGAGAGAATTGAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
||
| 3UTR GCA 72 bp | AACTGGAGTGTGTATCTACAGGGAGCTAGGACCTTGTaGTTTTTCATGGGTACCAATAGAAGGTCAAGTAGG | + |
|
Preference number: 3 (lower is better) Translates to: NWSVYLQGARTL*FFMGTNRRSSR Trigger: CCTACTTGACCTTCTATTGGTACCCATGAAAAAGCACAAGGTCCTAGCTCCCTGTAGATACACACTCCAGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
||
| 3UTR CCA 72 bp | TTTTTCCTTTCGCAACAGAATCTATACTGGTCTGGCTaGCCTAGAACTCACTATATAGACCAGACTGGCCTC | + |
|
Preference number: 3 (lower is better) Translates to: FFLSQQNLYWSG*PRTHYIDQTGL Trigger: GAGGCCAGTCTGGTCTATATAGTGAGTTCTAGGCCAGCCAGACCAGTATAGATTCTGTTGCGAAAGGAAAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
||
| 3UTR CCA 72 bp | GTTGAGGGCTGCTGCTCATCTGGAGTAAACCAAGGCTaGACAAACCACCTTAGTGCCATTTTGAAAATTAAG | + |
|
Preference number: 3 (lower is better) Translates to: VEGCCSSGVNQG*TNHLSAILKIK Trigger: CTTAATTTTCAAAATGGCACTAAGGTGGTTTGTCCAGCCTTGGTTTACTCCAGATGAGCAGCAGCCCTCAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
||
| 3UTR TCA 72 bp | CTTTATCTTGTGCTCTCAAAAGTCAGAATGAGAACCTaGAAACCAGACTGTTTCTTATCTGGGAGGGGCGTC | + |
|
Preference number: 3 (lower is better) Translates to: LYLVLSKVRMRT*KPDCFLSGRGV Trigger: GACGCCCCTCCCAGATAAGAAACAGTCTGGTTTTCAGGTTCTCATTCTGACTTTTGAGAGCACAAGATAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
||
| 3UTR GCA 72 bp | AGAGAAAAAGCTCACCCATGTGAGGTATGGGTTAGGTaGTATTCTCCCACCACATTACCATTCACAAGTTGT | + |
|
Preference number: 3 (lower is better) Translates to: REKAHPCEVWVR*YSPTTLPFTSC Trigger: ACAACTTGTGAATGGTAATGTGGTGGGAGAATAGCACCTAACCCATACCTCACATGGGTGAGCTTTTTCTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
||
| 3UTR CCA 72 bp | ACTTCAGCGTTTATTCTTTTTCCTCAGCGTTGGAGCTaGGACAAGACTGCTCAGCTCCAAACTCTGTTATTT | + |
|
Preference number: 3 (lower is better) Translates to: TSAFILFPQRWS*DKTAQLQTLLF Trigger: AAATAACAGAGTTTGGAGCTGAGCAGTCTTGTCCCAGCTCCAACGCTGAGGAAAAAGAATAAACGCTGAAGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
||
| 3UTR-3UTR CAA 90 bp | TTGGAGCTGGGACAAGACTGCTCAGCTCCAAACTCTGTTATTTCCTTACTTTTATGGTACAGGAATGCTTaGGGAGGCCATAAAAATTGG | + |
|
Preference number: 3 (lower is better) Translates to: LELGQDCSAPNSVISLLLWYRNA*GGHKNW Trigger: CCAATTTTTATGGCCTCCCAAAGCATTCCTGTACCA...TAAAAGTAAGGAAATAACAGAGTTTGGAGCTGAGCAGTCTTGTCCCAGCTCCAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
||
| 3UTR GCA 72 bp | GTATGCACTAGAAAATCTCACTTTCAGCCATTTCACTaGAGCCAGATGAGTTCAATCAACACACTGTTGAGG | + |
|
Preference number: 3 (lower is better) Translates to: VCTRKSHFQPFH*SQMSSINTLLR Trigger: CCTCAACAGTGTGTTGATTGAACTCATCTGGCTGCAGTGAAATGGCTGAAAGTGAGATTTTCTAGTGCATAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
||
| 3UTR CCA 72 bp | CCAGATATGGTGACAAACACTTACAATCCTAGAGACTaGGAGATAGAGGCAAGAGATCAAGAATTCAGCTTG | + |
|
Preference number: 3 (lower is better) Translates to: PDMVTNTYNPRD*EIEARDQEFSL Trigger: CAAGCTGAATTCTTGATCTCTTGCCTCTATCTCCCAGTCTCTAGGATTGTAAGTGTTTGTCACCATATCTGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
||
| 3UTR GCA 72 bp | TATTCTTTTTCCTCAGCGTTGGAGCTGGGACAAGACTaGTCAGCTCCAAACTCTGTTATTTCCTTACTTTTA | + |
|
Preference number: 3 (lower is better) Translates to: YSFSSALELGQD*SAPNSVISLLL Trigger: TAAAAGTAAGGAAATAACAGAGTTTGGAGCTGAGCAGTCTTGTCCCAGCTCCAACGCTGAGGAAAAAGAATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
||
| 3UTR TCA 72 bp | AAAAATCAAACGCAACAACAAAAGCAGCTCAGTAGCTaGCGAAGTCTGGAATTAAGGCTACTTCAGCGTTTA | + |
|
Preference number: 3 (lower is better) Translates to: KNQTQQQKQLSS*RSLELRLLQRL Trigger: TAAACGCTGAAGTAGCCTTAATTCCAGACTTCGTCAGCTACTGAGCTGCTTTTGTTGTTGCGTTTGATTTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
||
| 3UTR GCA 72 bp | ACCATGTCACTGCAGTACAAGCTGCCTTCTCAACGGTaGAGTATAATTGTTGGCATAATTTATTCAAGAACA | + |
|
Preference number: 3 (lower is better) Translates to: TMSLQYKLPSQR*SIIVGIIYSRT Trigger: TGTTCTTGAATAAATTATGCCAACAATTATACTGCACCGTTGAGAAGGCAGCTTGTACTGCAGTGACATGGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
||
| CDS-3UTR GCA 90 bp | CCAGCATCTCCCCCGTGGAGCACAGTGATGAGCGCAGTGGTTTATGGATGCGTTCGCATCCTCTGGATATaGGTGCCACGTCAGTCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: PASPPWSTVMSAVVYGCVRILWI*VPRQSL Trigger: GAGAGACTGACGTGGCACGCATATCCAGAGGATGCG...AACGCATCCATAAACCACTGCGCTCATCACTGTGCTCCACGGGGGAGATGCTGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 ENSMUST00000122182.2 |
||
| 3UTR CAA 72 bp | CCAGCAGGCAGGGGTAAGGCAACTGCTGGCTACTATTaGGCAGGACATGAGACTGTTCCTTTCCCATCCTCC | + |
|
Preference number: 4 (lower is better) Translates to: PAGRGKATAGYY*AGHETVPFPSS Trigger: GGAGGATGGGAAAGGAACAGTCTCATGTCCTGCCAAATAGTAGCCAGCAGTTGCCTTACCCCTGCCTGCTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
||
| CDS-3UTR GCA 90 bp | CCAGCATCTCCCCCGTGGAGCACAGTGATGAGCGCAGTGGTTTATGGATGCGTTTCCTCTGGATATGCGTaGCACGTCAGTCTCTCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: PASPPWSTVMSAVVYGCVSSGYA*HVSLSS Trigger: TGAAGAGAGACTGACGTGGCACGCATATCCAGAGGA...AACGCATCCATAAACCACTGCGCTCATCACTGTGCTCCACGGGGGAGATGCTGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 ENSMUST00000122182.2 |
||
| 3UTR CAA 72 bp | GGCAGGGCTGGAGAGATGGCACAGCAGTTAAGAGCATaGACTGCTCTTCTAAAGGCCCCCAGTTCAATTCCC | + |
|
Preference number: 4 (lower is better) Translates to: GRAGEMAQQLRA*TALLKAPSSIP Trigger: GGGAATTGAACTGGGGGCCTTTAGAAGAGCAGTCAATGCTCTTAACTGCTGTGCCATCTCTCCAGCCCTGCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
||
| 3UTR CAA 72 bp | GGGGCAGAAAAAGACATCAGTTCAGTGGCACAGCACTaGCCTGGCATGTCTAAGCTCAAGTCCCAGTACCAC | + |
|
Preference number: 4 (lower is better) Translates to: GAEKDISSVAQH*PGMSKLKSQYH Trigger: GTGGTACTGGGACTTGAGCTTAGACATGCCAGGCAAGTGCTGTGCCACTGAACTGATGTCTTTTTCTGCCCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
||
| CDS-3UTR GCA 90 bp | TGGCAGGACATGAGACTGTTCCTTTCCCATCCTCCAGAGAACCCTCTAGGACCCGGTTCCCAAGTATTGTaGTCCTCAGAAAAGCCTTTC | + |
|
Preference number: 4 (lower is better) Translates to: WQDMRLFLSHPPENPLGPGSQVL*SSEKPF Trigger: GAAAGGCTTTTCTGAGGAGCACAATACTTGGGAACC...GGGTCCTAGAGGGTTCTCTGGAGGATGGGAAAGGAACAGTCTCATGTCCTGCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
||
| CDS-3UTR CCA 90 bp | CCAGCATCTCCCCCGTGGAGCACAGTGATGAGCGCAGTGGTTTATGGATGCGTTTGCTATCACAATCTGTaGACACTTCACGTTAGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: PASPPWSTVMSAVVYGCVCYHNL*TLHVSF Trigger: GAAGCTAACGTGAAGTGTCCACAGATTGTGATAGCA...AACGCATCCATAAACCACTGCGCTCATCACTGTGCTCCACGGGGGAGATGCTGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 ENSMUST00000122182.2 |
||
| CDS-3UTR GCA 90 bp | AAAGATGTTTTGAAGGGTGGGAGGTGGCACCCACTCTTCCAGAGGACCAGGATTAACAGATATTCCACTTaGCCCTTAACCATGCGCCTG | + |
|
Preference number: 4 (lower is better) Translates to: KDVLKGGRWHPLFQRTRINRYST*PLTMRL Trigger: CAGGCGCATGGTTAAGGGGCAAGTGGAATATCTGTT...AATCCTGGTCCTCTGGAAGAGTGGGTGCCACCTCCCACCCTTCAAAACATCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
||
| CDS-3UTR CCA 90 bp | TCCCCCGTGGAGCACAGTGATGAGCGCAGTGGTTTATGGATGCGTTTAGGATGGCTTCTGATTTCTCCCTaGGCTTATTGTTTTCACCCT | + |
|
Preference number: 4 (lower is better) Translates to: SPVEHSDERSGLWMRLGWLLISP*AYCFHP Trigger: AGGGTGAAAACAATAAGCCCAGGGAGAAATCAGAAG...CCATCCTAAACGCATCCATAAACCACTGCGCTCATCACTGTGCTCCACGGGGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 ENSMUST00000122182.2 |
||
| 3UTR CAA 72 bp | TGGGAGGTGGCACCCACTCTTCCAGAGGACCAGGATTaGATTCTCAATACTCACATAGCAGCTCACTCCTAT | + |
|
Preference number: 4 (lower is better) Translates to: WEVAPTLPEDQD*ILNTHIAAHSY Trigger: ATAGGAGTGAGCTGCTATGTGAGTATTGAGAATCAAATCCTGGTCCTCTGGAAGAGTGGGTGCCACCTCCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
||
| CDS-3UTR GCA 90 bp | CTCTCATTACTATCAACAACCCGGTGGCTAGATGCTCTGGCCCAGACAGCTTTGGGTTCCCAAGTATTGTaGTCCTCAGAAAAGCCTTTC | + |
|
Preference number: 4 (lower is better) Translates to: LSLLSTTRWLDALAQTALGSQVL*SSEKPF Trigger: GAAAGGCTTTTCTGAGGAGCACAATACTTGGGAACC...CAAAGCTGTCTGGGCCAGAGCATCTAGCCACCGGGTTGTTGATAGTAATGAGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
||
| CDS-3UTR GCA 90 bp | GAAGTCATCGTCATAATAAAATCTCCCAAAGCAACCAACCCCAAAGATCATGACCGCATCCTCTGGATATaGGTGCCACGTCAGTCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: EVIVIIKSPKATNPKDHDRILWI*VPRQSL Trigger: GAGAGACTGACGTGGCACGCATATCCAGAGGATGCG...GTCATGATCTTTGGGGTTGGTTGCTTTGGGAGATTTTATTATGACGATGACTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 ENSMUST00000122182.2 |
||
| CDS-3UTR GCA 90 bp | CCCAAAGCAACCAACCCCAAAGATCATGACTCTAAGGTGATTAAAAAGTTACAGTCCTCTGGATATGCGTaGCACGTCAGTCTCTCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: PKATNPKDHDSKVIKKLQSSGYA*HVSLSS Trigger: TGAAGAGAGACTGACGTGGCACGCATATCCAGAGGA...CTGTAACTTTTTAATCACCTTAGAGTCATGATCTTTGGGGTTGGTTGCTTTGGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 ENSMUST00000122182.2 |
||
| CDS-3UTR CCA 90 bp | CAAGAAACTGAAGTCATCGTCATAATAAAATCTCCCAAAGCAACCAACCCCAAAGTTTTCCGCATCCTCTaGATATGCGTGCCACGTCAG | + |
|
Preference number: 4 (lower is better) Translates to: QETEVIVIIKSPKATNPKVFRIL*ICVPRQ Trigger: CTGACGTGGCACGCATATCCAGAGGATGCGGAAAAC...TTTGGGGTTGGTTGCTTTGGGAGATTTTATTATGACGATGACTTCAGTTTCTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 ENSMUST00000122182.2 |
||
| CDS-3UTR CCA 90 bp | GAAACTGAAGTCATCGTCATAATAAAATCTCCCAAAGCAACCAACCCCAAAGATGTTTTCCGCATCCTCTaGATATGCGTGCCACGTCAG | + |
|
Preference number: 4 (lower is better) Translates to: ETEVIVIIKSPKATNPKDVFRIL*ICVPRQ Trigger: CTGACGTGGCACGCATATCCAGAGGATGCGGAAAAC...ATCTTTGGGGTTGGTTGCTTTGGGAGATTTTATTATGACGATGACTTCAGTTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 ENSMUST00000122182.2 |
||
| 3UTR CAA 72 bp | CAAGGCCAAGAAAGTGTGAGGGCTAAACAGAGCGCCTaGACAGATTTAAATGTGAAGTTTCAAGCCCTAAGA | + |
|
Preference number: 4 (lower is better) Translates to: QGQESVRAKQSA*TDLNVKFQALR Trigger: TCTTAGGGCTTGAAACTTCACATTTAAATCTGTCAAGGCGCTCTGTTTAGCCCTCACACTTTCTTGGCCTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
||
| CDS-3UTR GCA 90 bp | CCTGACGTTCACAGAGCTACACTTAGGAATCAGATCATCAGTTATATTACAGGAAACAGATATTCCACTTaGCCCTTAACCATGCGCCTG | + |
|
Preference number: 4 (lower is better) Translates to: PDVHRATLRNQIISYITGNRYST*PLTMRL Trigger: CAGGCGCATGGTTAAGGGGCAAGTGGAATATCTGTT...TCCTGTAATATAACTGATGATCTGATTCCTAAGTGTAGCTCTGTGAACGTCAGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 ENSMUST00000122182.2 |
||
| CDS-3UTR GCA 90 bp | ACTGAAGTCATCGTCATAATAAAATCTCCCAAAGCAACCAACCCCAAAGATCATTCCTCTGGATATGCGTaGCACGTCAGTCTCTCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: TEVIVIIKSPKATNPKDHSSGYA*HVSLSS Trigger: TGAAGAGAGACTGACGTGGCACGCATATCCAGAGGA...ATGATCTTTGGGGTTGGTTGCTTTGGGAGATTTTATTATGACGATGACTTCAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 ENSMUST00000122182.2 |
||
| CDS-3UTR GCA 90 bp | CTTGACAGATTTAAATGTGAAGTTTCAAGCCCTAAGAGAACTGAATTGTTATGGCGCATCCTCTGGATATaGGTGCCACGTCAGTCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: LDRFKCEVSSPKRTELLWRILWI*VPRQSL Trigger: GAGAGACTGACGTGGCACGCATATCCAGAGGATGCG...CCATAACAATTCAGTTCTCTTAGGGCTTGAAACTTCACATTTAAATCTGTCAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
||
| CDS-3UTR CCA 90 bp | AAGATAGCTCTAGGAAACACTTCTGTCCAAGGCTGCAATTCTCCAGCAGAAACACTTCTGATTTCTCCCTaGGCTTATTGTTTTCACCCT | + |
|
Preference number: 4 (lower is better) Translates to: KIALGNTSVQGCNSPAETLLISP*AYCFHP Trigger: AGGGTGAAAACAATAAGCCCAGGGAGAAATCAGAAG...TGTTTCTGCTGGAGAATTGCAGCCTTGGACAGAAGTGTTTCCTAGAGCTATCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
||
| CDS-3UTR GCA 90 bp | CAAGAAACTGAAGTCATCGTCATAATAAAATCTCCCAAAGCAACCAACCCCAAAAACAGATATTCCACTTaGCCCTTAACCATGCGCCTG | + |
|
Preference number: 4 (lower is better) Translates to: QETEVIVIIKSPKATNPKNRYST*PLTMRL Trigger: CAGGCGCATGGTTAAGGGGCAAGTGGAATATCTGTT...TTTGGGGTTGGTTGCTTTGGGAGATTTTATTATGACGATGACTTCAGTTTCTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 ENSMUST00000122182.2 |
||
| CDS-3UTR CCA 90 bp | AAAGCAACCAACCCCAAAGATCATGACTCTAAGGTGATTAAAAAGTTACAGGGGCTTCTGATTTCTCCCTaGGCTTATTGTTTTCACCCT | + |
|
Preference number: 4 (lower is better) Translates to: KATNPKDHDSKVIKKLQGLLISP*AYCFHP Trigger: AGGGTGAAAACAATAAGCCCAGGGAGAAATCAGAAG...CCCCTGTAACTTTTTAATCACCTTAGAGTCATGATCTTTGGGGTTGGTTGCTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 ENSMUST00000122182.2 |
||
| CDS-3UTR CCA 90 bp | CCCAAAGCAACCAACCCCAAAGATCATGACTCTAAGGTGATTAAAAAGTTACAGTGCTATCACAATCTGTaGACACTTCACGTTAGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: PKATNPKDHDSKVIKKLQCYHNL*TLHVSF Trigger: GAAGCTAACGTGAAGTGTCCACAGATTGTGATAGCA...CTGTAACTTTTTAATCACCTTAGAGTCATGATCTTTGGGGTTGGTTGCTTTGGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 ENSMUST00000122182.2 |
||
| CDS-3UTR CCA 90 bp | CAAGAAACTGAAGTCATCGTCATAATAAAATCTCCCAAAGCAACCAACCCCAAATATCATCAGCGCTGTTaGAGAAACTGGATTTCCTCT | + |
|
Preference number: 4 (lower is better) Translates to: QETEVIVIIKSPKATNPKYHQRC*RNWISS Trigger: AGAGGAAATCCAGTTTCTCCAACAGCGCTGATGATA...TTTGGGGTTGGTTGCTTTGGGAGATTTTATTATGACGATGACTTCAGTTTCTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 ENSMUST00000122182.2 |
||
| CDS-3UTR CCA 90 bp | AACAATCAAGAAACTGAAGTCATCGTCATAATAAAATCTCCCAAAGCAACCAACTATCATCAGCGCTGTTaGAGAAACTGGATTTCCTCT | + |
|
Preference number: 4 (lower is better) Translates to: NNQETEVIVIIKSPKATNYHQRC*RNWISS Trigger: AGAGGAAATCCAGTTTCTCCAACAGCGCTGATGATA...GTTGGTTGCTTTGGGAGATTTTATTATGACGATGACTTCAGTTTCTTGATTGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 ENSMUST00000122182.2 |
||
| CDS-3UTR CCA 90 bp | AACAATCAAGAAACTGAAGTCATCGTCATAATAAAATCTCCCAAAGCAACCAACTGCTATCACAATCTGTaGACACTTCACGTTAGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: NNQETEVIVIIKSPKATNCYHNL*TLHVSF Trigger: GAAGCTAACGTGAAGTGTCCACAGATTGTGATAGCA...GTTGGTTGCTTTGGGAGATTTTATTATGACGATGACTTCAGTTTCTTGATTGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 ENSMUST00000122182.2 |
||
| 3UTR CAA 72 bp | AAACAAGATGGTTCTTATGCTCACGTATCTGCACTCTaGGTAATGACCACATTTCTAGCTTTATTTTCTGCA | + |
|
Preference number: 4 (lower is better) Translates to: KQDGSYAHVSAL*VMTTFLALFSA Trigger: TGCAGAAAATAAAGCTAGAAATGTGGTCATTACCAAGAGTGCAGATACGTGAGCATAAGAACCATCTTGTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
||
| 3UTR CAA 72 bp | CTCCAAAAGGGTGAGAAATTGAACAGTGTGAGCAACTaGCTAAAATGCCCATTAAGAAGAAATATACAAACA | + |
|
Preference number: 4 (lower is better) Translates to: LQKGEKLNSVSN*LKCPLRRNIQT Trigger: TGTTTGTATATTTCTTCTTAATGGGCATTTTAGCAAGTTGCTCACACTGTTCAATTTCTCACCCTTTTGGAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
||
| CDS-3UTR CAA 90 bp | CCAGCATCTCCCCCGTGGAGCACAGTGATGAGCGCAGTGGTTTATGGATGCGTTTCAGGTTCCCAAGTATaGTGCTCCTCAGAAAAGCCT | + |
|
Preference number: 5 (lower is better) Translates to: PASPPWSTVMSAVVYGCVSGSQV*CSSEKP Trigger: AGGCTTTTCTGAGGAGCACAATACTTGGGAACCTGA...AACGCATCCATAAACCACTGCGCTCATCACTGTGCTCCACGGGGGAGATGCTGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 ENSMUST00000122182.2 |
||
| CDS-3UTR CAA 90 bp | AAGGCAACTGCTGGCTACTATTTGGCAGGACATGAGACTGTTCCTTTCCCATCCCAACAGATATTCCACTaGCCCCTTAACCATGCGCCT | + |
|
Preference number: 5 (lower is better) Translates to: KATAGYYLAGHETVPFPSQQIFH*PLNHAP Trigger: AGGCGCATGGTTAAGGGGCAAGTGGAATATCTGTTG...GGATGGGAAAGGAACAGTCTCATGTCCTGCCAAATAGTAGCCAGCAGTTGCCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
||
| CDS-3UTR CAA 90 bp | GGGAAGGGGCAGAAAAAGACATCAGTTCAGTGGCACAGCACTTGCCTGGCATGTGCGCTTTCTTTTTCTTaGTTTTCCGCATCCTCTGGA | + |
|
Preference number: 5 (lower is better) Translates to: GKGQKKTSVQWHSTCLACALSFS*FSASSG Trigger: TCCAGAGGATGCGGAAAACAAAGAAAAAGAAAGCGC...ACATGCCAGGCAAGTGCTGTGCCACTGAACTGATGTCTTTTTCTGCCCCTTCCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
||
| CDS-3UTR CAA 90 bp | GAAGATAGCTCTAGGAAACACTTCTGTCCAAGGCTGCAATTCTCCAGCAGAAACCAACAGATATTCCACTaGCCCCTTAACCATGCGCCT | + |
|
Preference number: 5 (lower is better) Translates to: EDSSRKHFCPRLQFSSRNQQIFH*PLNHAP Trigger: AGGCGCATGGTTAAGGGGCAAGTGGAATATCTGTTG...GTTTCTGCTGGAGAATTGCAGCCTTGGACAGAAGTGTTTCCTAGAGCTATCTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 |
||
| CDS-3UTR CAA 90 bp | CCTGACGTTCACAGAGCTACACTTAGGAATCAGATCATCAGTTATATTACAGGACAACAGATATTCCACTaGCCCCTTAACCATGCGCCT | + |
|
Preference number: 5 (lower is better) Translates to: PDVHRATLRNQIISYITGQQIFH*PLNHAP Trigger: AGGCGCATGGTTAAGGGGCAAGTGGAATATCTGTTG...TCCTGTAATATAACTGATGATCTGATTCCTAAGTGTAGCTCTGTGAACGTCAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 ENSMUST00000122182.2 |
||
| CDS-3UTR CAA 90 bp | CCTGACGTTCACAGAGCTACACTTAGGAATCAGATCATCAGTTATATTACAGGATCAGGTTCCCAAGTATaGTGCTCCTCAGAAAAGCCT | + |
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Preference number: 5 (lower is better) Translates to: PDVHRATLRNQIISYITGSGSQV*CSSEKP Trigger: AGGCTTTTCTGAGGAGCACAATACTTGGGAACCTGA...TCCTGTAATATAACTGATGATCTGATTCCTAAGTGTAGCTCTGTGAACGTCAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 ENSMUST00000122182.2 |
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| CDS-3UTR CAA 90 bp | CACAGTGAACTGAAAAGAAGCCTTGAGGACCAATGCTCAATTCTGAAATGGTATGCGCTTTCTTTTTCTTaGTTTTCCGCATCCTCTGGA | + |
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Preference number: 5 (lower is better) Translates to: HSELKRSLEDQCSILKWYALSFS*FSASSG Trigger: TCCAGAGGATGCGGAAAACAAAGAAAAAGAAAGCGC...ATACCATTTCAGAATTGAGCATTGGTCCTCAAGGCTTCTTTTCAGTTCACTGTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000118152.8 |
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| CDS-3UTR CAA 90 bp | GAAACTGAAGTCATCGTCATAATAAAATCTCCCAAAGCAACCAACCCCAAAGATGCGCTTTCTTTTTCTTaGTTTTCCGCATCCTCTGGA | + |
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Preference number: 5 (lower is better) Translates to: ETEVIVIIKSPKATNPKDALSFS*FSASSG Trigger: TCCAGAGGATGCGGAAAACAAAGAAAAAGAAAGCGC...ATCTTTGGGGTTGGTTGCTTTGGGAGATTTTATTATGACGATGACTTCAGTTTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 ENSMUST00000122182.2 |
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| CDS CAA 90 bp | TTAGATTTAATATCATCAGCGCTGTTGGAGAAACTGGATTTCCTCTaGTTTCCTTCTGATTTCTCCCTGGGCTTATTGTTTTCACCCTCC | + |
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Preference number: 6 (lower is better) Translates to: LDLISSALLEKLDFL*FPSDFSLGLLFSPS Trigger: GGAGGGTGAAAACAATAAGCCCAGGGAGAAATCAGAAGGAAACAAGAGGAAATCCAGTTTCTCCAACAGCGCTGATGATATTAAATCTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000108813.10 ENSMUST00000118152.8 ENSMUST00000122182.2 |
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