Pregenerated sensors for CBX3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029836Ensembl transcript IDs: ENSMUST00000031862.14, ENSMUST00000094623.10, ENSMUST00000114445.8, ENSMUST00000114446.8
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CCTCTCAGCTGGCCTCTTAGGTCAGAGCTCTATCTGCCTCTAGCCCAAGTCTTGCATGTTCGCCTCCTTTaGCAGCACCAAGTCGGCCTC | + |
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Preference number: 2 (lower is better) Translates to: PLSWPLRSELYLPLAQVLHVRLL*QHQVGL Trigger: GAGGCCGACTTGGTGCTGGCAAAGGAGGCGAACATG...CAAGACTTGGGCTAGAGGCAGATAGAGCTCTGACCTAAGAGGCCAGCTGAGAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114445.8 |
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| 3UTR-3UTR TCA 90 bp | CTGACCTGGACCTGCCTCTGCCTCTCAGCTGGCCTCTTAGGTCAGAGCTCTATCGGAATCAGTGCCTTTTaGTGCAGAACAAAAACCAAA | + |
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Preference number: 2 (lower is better) Translates to: LTWTCLCLSAGLLGQSSIGISAF*CRTKTK Trigger: TTTGGTTTTTGTTCTGCATCAAAAGGCACTGATTCC...GATAGAGCTCTGACCTAAGAGGCCAGCTGAGAGGCAGAGGCAGGTCCAGGTCAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000031862.14 ENSMUST00000114445.8 ENSMUST00000114446.8 |
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| 3UTR-3UTR GCA 90 bp | CCTCTCAGCTGGCCTCTTAGGTCAGAGCTCTATCTGCCTCTAGCCCAAGTCTTGCAGAAAGCTCTTACTTaGTCAAAGGAATCAGTGCCT | + |
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Preference number: 2 (lower is better) Translates to: PLSWPLRSELYLPLAQVLQKALT*SKESVP Trigger: AGGCACTGATTCCTTTGAGCAAGTAAGAGCTTTCTG...CAAGACTTGGGCTAGAGGCAGATAGAGCTCTGACCTAAGAGGCCAGCTGAGAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031862.14 ENSMUST00000114445.8 ENSMUST00000114446.8 |
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| 3UTR-3UTR GCA 90 bp | AACGTCAGCTCCAGCCACGATTCTATTTCCACATCAAACAGATTCCATAAATCATGGCTGACCTGGACCTaGCTCTGCCTCTCAGCTGGC | + |
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Preference number: 2 (lower is better) Translates to: NVSSSHDSISTSNRFHKSWLTWT*LCLSAG Trigger: GCCAGCTGAGAGGCAGAGGCAGGTCCAGGTCAGCCA...TGATTTATGGAATCTGTTTGATGTGGAAATAGAATCGTGGCTGGAGCTGACGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031862.14 ENSMUST00000114445.8 ENSMUST00000114446.8 |
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| 3UTR-3UTR GCA 90 bp | TTAAATTGCCAACGTCAGCTCCAGCCACGATTCTATTTCCACATCAAACAGATTACCTGGACCTGCCTCTaGCTCTCAGCTGGCCTCTTA | + |
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Preference number: 2 (lower is better) Translates to: LNCQRQLQPRFYFHIKQITWTCL*LSAGLL Trigger: TAAGAGGCCAGCTGAGAGGCAGAGGCAGGTCCAGGT...AATCTGTTTGATGTGGAAATAGAATCGTGGCTGGAGCTGACGTTGGCAATTTAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031862.14 ENSMUST00000114445.8 ENSMUST00000114446.8 |
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| 3UTR-3UTR TCA 90 bp | CTACAAAGTTCACCAGAGGAACCTTTACATAGACTGGCTGACCTGGACCTGCCTGGAATCAGTGCCTTTTaGTGCAGAACAAAAACCAAA | + |
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Preference number: 2 (lower is better) Translates to: LQSSPEEPLHRLADLDLPGISAF*CRTKTK Trigger: TTTGGTTTTTGTTCTGCATCAAAAGGCACTGATTCC...AGGCAGGTCCAGGTCAGCCAGTCTATGTAAAGGTTCCTCTGGTGAACTTTGTAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000031862.14 ENSMUST00000114445.8 ENSMUST00000114446.8 |
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| 3UTR-3UTR TCA 90 bp | CTACAAAGTTCACCAGAGGAACCTTTACATAGACTGGCTGACCTGGACCTGCCTGCTGTTCTTCAAAGCTaGGGAAATACAACATGGTAT | + |
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Preference number: 2 (lower is better) Translates to: LQSSPEEPLHRLADLDLPAVLQS*GNTTWY Trigger: ATACCATGTTGTATTTCCTCAGCTTTGAAGAACAGC...AGGCAGGTCCAGGTCAGCCAGTCTATGTAAAGGTTCCTCTGGTGAACTTTGTAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031862.14 ENSMUST00000114445.8 ENSMUST00000114446.8 |
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| 3UTR-3UTR GCA 90 bp | AACGTCAGCTCCAGCCACGATTCTATTTCCACATCAAACAGATTCCATAAATCATCTTCAGGACAAGAATaGCAAGTCAGCCGCTCCTCG | + |
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Preference number: 2 (lower is better) Translates to: NVSSSHDSISTSNRFHKSSSGQE*QVSRSS Trigger: CGAGGAGCGGCTGACTTGGCATTCTTGTCCTGAAGA...TGATTTATGGAATCTGTTTGATGTGGAAATAGAATCGTGGCTGGAGCTGACGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114445.8 |
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| 3UTR-3UTR TCA 90 bp | ATTTTGTTCACTCACTTAGCAGGTCTTAAATTGCCAACGTCAGCTCCAGCCACGGCTGTTCTTCAAAGCTaGGGAAATACAACATGGTAT | + |
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Preference number: 2 (lower is better) Translates to: ILFTHLAGLKLPTSAPATAVLQS*GNTTWY Trigger: ATACCATGTTGTATTTCCTCAGCTTTGAAGAACAGC...CGTGGCTGGAGCTGACGTTGGCAATTTAAGACCTGCTAAGTGAGTGAACAAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031862.14 ENSMUST00000114445.8 ENSMUST00000114446.8 |
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| 3UTR-3UTR TCA 90 bp | AAAGCTCTTACTTGCTCAAAGGAATCAGTGCCTTTTGATGCAGAACAAAAACCAAGTCCTTCCACTTCATaGGAAACATTAACTCTCCGC | + |
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Preference number: 2 (lower is better) Translates to: KALTCSKESVPFDAEQKPSPSTS*ETLTLR Trigger: GCGGAGAGTTAATGTTTCTCATGAAGTGGAAGGACT...TGGTTTTTGTTCTGCATCAAAAGGCACTGATTCCTTTGAGCAAGTAAGAGCTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114445.8 |
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| 3UTR-3UTR GCA 90 bp | ACCCAGAATGGTCCTTCTGTGTCCCAGTTAAAAATAAGTTCTGACTTGAGTAATCAGAAAGCTCTTACTTaGTCAAAGGAATCAGTGCCT | + |
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Preference number: 2 (lower is better) Translates to: TQNGPSVSQLKISSDLSNQKALT*SKESVP Trigger: AGGCACTGATTCCTTTGAGCAAGTAAGAGCTTTCTG...ATTACTCAAGTCAGAACTTATTTTTAACTGGGACACAGAAGGACCATTCTGGGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000031862.14 ENSMUST00000094623.10 ENSMUST00000114445.8 ENSMUST00000114446.8 |
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| 3UTR-3UTR GCA 90 bp | TTGGATGACATTCTGATACTACAAAGTTACTTTTCTGGCTCATTGAACCATAACCAGAAAGCTCTTACTTaGTCAAAGGAATCAGTGCCT | + |
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Preference number: 2 (lower is better) Translates to: LDDILILQSYFSGSLNHNQKALT*SKESVP Trigger: AGGCACTGATTCCTTTGAGCAAGTAAGAGCTTTCTG...GTTATGGTTCAATGAGCCAGAAAAGTAACTTTGTAGTATCAGAATGTCATCCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031862.14 ENSMUST00000114445.8 ENSMUST00000114446.8 |
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| 3UTR-3UTR TCA 90 bp | TTGGATGACATTCTGATACTACAAAGTTACTTTTCTGGCTCATTGAACCATAACGCTGTTCTTCAAAGCTaGGGAAATACAACATGGTAT | + |
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Preference number: 2 (lower is better) Translates to: LDDILILQSYFSGSLNHNAVLQS*GNTTWY Trigger: ATACCATGTTGTATTTCCTCAGCTTTGAAGAACAGC...GTTATGGTTCAATGAGCCAGAAAAGTAACTTTGTAGTATCAGAATGTCATCCAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031862.14 ENSMUST00000114445.8 ENSMUST00000114446.8 |
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| 3UTR GCA 72 bp | AACCTTTACATAGACTGGCTGACCTGGACCTGCCTCTaGCTCTCAGCTGGCCTCTTAGGTCAGAGCTCTATC | + |
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Preference number: 3 (lower is better) Translates to: NLYIDWLTWTCL*LSAGLLGQSSI Trigger: GATAGAGCTCTGACCTAAGAGGCCAGCTGAGAGGCAGAGGCAGGTCCAGGTCAGCCAGTCTATGTAAAGGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031862.14 ENSMUST00000114445.8 ENSMUST00000114446.8 |
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| 3UTR-3UTR CAA 90 bp | CTGACCTGGACCTGCCTCTGCCTCTCAGCTGGCCTCTTAGGTCAGAGCTCTATCAGGAATCAGTGCCTTTaGATGCAGAACAAAAACCAA | + |
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Preference number: 3 (lower is better) Translates to: LTWTCLCLSAGLLGQSSIRNQCL*MQNKNQ Trigger: TTGGTTTTTGTTCTGCATCAAAAGGCACTGATTCCT...GATAGAGCTCTGACCTAAGAGGCCAGCTGAGAGGCAGAGGCAGGTCCAGGTCAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000031862.14 ENSMUST00000114445.8 ENSMUST00000114446.8 |
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| 3UTR-3UTR CAA 90 bp | CTACAAAGTTCACCAGAGGAACCTTTACATAGACTGGCTGACCTGGACCTGCCTTTAGCAGGTCTTAAATaGCCAACGTCAGCTCCAGCC | + |
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Preference number: 3 (lower is better) Translates to: LQSSPEEPLHRLADLDLPLAGLK*PTSAPA Trigger: GGCTGGAGCTGACGTTGGCAATTTAAGACCTGCTAA...AGGCAGGTCCAGGTCAGCCAGTCTATGTAAAGGTTCCTCTGGTGAACTTTGTAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031862.14 ENSMUST00000114445.8 ENSMUST00000114446.8 |
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| 3UTR-3UTR CAA 90 bp | ATTTTGTTCACTCACTTAGCAGGTCTTAAATTGCCAACGTCAGCTCCAGCCACGACAGAAAGCTCTTACTaGCTCAAAGGAATCAGTGCC | + |
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Preference number: 3 (lower is better) Translates to: ILFTHLAGLKLPTSAPATTESSY*LKGISA Trigger: GGCACTGATTCCTTTGAGCAAGTAAGAGCTTTCTGT...CGTGGCTGGAGCTGACGTTGGCAATTTAAGACCTGCTAAGTGAGTGAACAAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031862.14 ENSMUST00000114445.8 ENSMUST00000114446.8 |
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| 3UTR-3UTR CAA 90 bp | CAAATTTTGTTCACTCACTTAGCAGGTCTTAAATTGCCAACGTCAGCTCCAGCCAGGAATCAGTGCCTTTaGATGCAGAACAAAAACCAA | + |
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Preference number: 3 (lower is better) Translates to: QILFTHLAGLKLPTSAPARNQCL*MQNKNQ Trigger: TTGGTTTTTGTTCTGCATCAAAAGGCACTGATTCCT...GGCTGGAGCTGACGTTGGCAATTTAAGACCTGCTAAGTGAGTGAACAAAATTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000031862.14 ENSMUST00000114445.8 ENSMUST00000114446.8 |
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| 3UTR-3UTR CAA 90 bp | AAAACCCAGAATGGTCCTTCTGTGTCCCAGTTAAAAATAAGTTCTGACTTGAGTACAGAAAGCTCTTACTaGCTCAAAGGAATCAGTGCC | + |
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Preference number: 3 (lower is better) Translates to: KTQNGPSVSQLKISSDLSTESSY*LKGISA Trigger: GGCACTGATTCCTTTGAGCAAGTAAGAGCTTTCTGT...ACTCAAGTCAGAACTTATTTTTAACTGGGACACAGAAGGACCATTCTGGGTTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000031862.14 ENSMUST00000094623.10 ENSMUST00000114445.8 ENSMUST00000114446.8 |
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| 3UTR-3UTR CAA 90 bp | AACGTCAGCTCCAGCCACGATTCTATTTCCACATCAAACAGATTCCATAAATCACCTCTAGCCCAAGTCTaGTTATTAAATCACACTATT | + |
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Preference number: 3 (lower is better) Translates to: NVSSSHDSISTSNRFHKSPLAQV*LLNHTI Trigger: AATAGTGTGATTTAATAACAAGACTTGGGCTAGAGG...TGATTTATGGAATCTGTTTGATGTGGAAATAGAATCGTGGCTGGAGCTGACGTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031862.14 ENSMUST00000114445.8 ENSMUST00000114446.8 |
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| 3UTR-3UTR CAA 90 bp | TTGGATGACATTCTGATACTACAAAGTTACTTTTCTGGCTCATTGAACCATAACAGGAATCAGTGCCTTTaGATGCAGAACAAAAACCAA | + |
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Preference number: 3 (lower is better) Translates to: LDDILILQSYFSGSLNHNRNQCL*MQNKNQ Trigger: TTGGTTTTTGTTCTGCATCAAAAGGCACTGATTCCT...GTTATGGTTCAATGAGCCAGAAAAGTAACTTTGTAGTATCAGAATGTCATCCAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000031862.14 ENSMUST00000114445.8 ENSMUST00000114446.8 |
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| CDS-3UTR CCA 90 bp | CCTCTCAGCTGGCCTCTTAGGTCAGAGCTCTATCTGCCTCTAGCCCAAGTCTTGTCTGGCAAAGCCCCTTaGTTTGTCAGCTCTGTGAAC | + |
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Preference number: 4 (lower is better) Translates to: PLSWPLRSELYLPLAQVLSGKAP*FVSSVN Trigger: GTTCACAGAGCTGACAAACCAAGGGGCTTTGCCAGA...CAAGACTTGGGCTAGAGGCAGATAGAGCTCTGACCTAAGAGGCCAGCTGAGAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114445.8 |
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| CDS-3UTR TCA 90 bp | CCTCTCAGCTGGCCTCTTAGGTCAGAGCTCTATCTGCCTCTAGCCCAAGTCTTGAGTCCTTCCACTTCATaGGAAACATTAACTCTCCGC | + |
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Preference number: 4 (lower is better) Translates to: PLSWPLRSELYLPLAQVLSPSTS*ETLTLR Trigger: GCGGAGAGTTAATGTTTCTCATGAAGTGGAAGGACT...CAAGACTTGGGCTAGAGGCAGATAGAGCTCTGACCTAAGAGGCCAGCTGAGAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031862.14 ENSMUST00000114446.8 |
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| CDS-3UTR GCA 90 bp | ATTTTGTTCACTCACTTAGCAGGTCTTAAATTGCCAACGTCAGCTCCAGCCACGCATGTTCGCCTCCTTTaGCAGCACCAAGTCGGCCTC | + |
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Preference number: 4 (lower is better) Translates to: ILFTHLAGLKLPTSAPATHVRLL*QHQVGL Trigger: GAGGCCGACTTGGTGCTGGCAAAGGAGGCGAACATG...CGTGGCTGGAGCTGACGTTGGCAATTTAAGACCTGCTAAGTGAGTGAACAAAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031862.14 ENSMUST00000114446.8 |
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| CDS-3UTR GCA 90 bp | GCAGGTCTTAAATTGCCAACGTCAGCTCCAGCCACGATTCTATTTCCACATCAATCTTCAGGACAAGAATaGCAAGTCAGCCGCTCCTCG | + |
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Preference number: 4 (lower is better) Translates to: AGLKLPTSAPATILFPHQSSGQE*QVSRSS Trigger: CGAGGAGCGGCTGACTTGGCATTCTTGTCCTGAAGA...TTGATGTGGAAATAGAATCGTGGCTGGAGCTGACGTTGGCAATTTAAGACCTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031862.14 ENSMUST00000114446.8 |
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| CDS-3UTR GCA 90 bp | ACGTCAGCTCCAGCCACGATTCTATTTCCACATCAAACAGATTCCATAAATCATCATGTTCGCCTCCTTTaGCAGCACCAAGTCGGCCTC | + |
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Preference number: 4 (lower is better) Translates to: TSAPATILFPHQTDSINHHVRLL*QHQVGL Trigger: GAGGCCGACTTGGTGCTGGCAAAGGAGGCGAACATG...ATGATTTATGGAATCTGTTTGATGTGGAAATAGAATCGTGGCTGGAGCTGACGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031862.14 ENSMUST00000114446.8 |
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| CDS-3UTR GCA 90 bp | ACCCAGAATGGTCCTTCTGTGTCCCAGTTAAAAATAAGTTCTGACTTGAGTAATCATGTTCGCCTCCTTTaGCAGCACCAAGTCGGCCTC | + |
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Preference number: 4 (lower is better) Translates to: TQNGPSVSQLKISSDLSNHVRLL*QHQVGL Trigger: GAGGCCGACTTGGTGCTGGCAAAGGAGGCGAACATG...ATTACTCAAGTCAGAACTTATTTTTAACTGGGACACAGAAGGACCATTCTGGGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000031862.14 ENSMUST00000094623.10 ENSMUST00000114446.8 |
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| CDS-3UTR GCA 90 bp | AAAGCTCTTACTTGCTCAAAGGAATCAGTGCCTTTTGATGCAGAACAAAAACCATCTTCAGGACAAGAATaGCAAGTCAGCCGCTCCTCG | + |
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Preference number: 4 (lower is better) Translates to: KALTCSKESVPFDAEQKPSSGQE*QVSRSS Trigger: CGAGGAGCGGCTGACTTGGCATTCTTGTCCTGAAGA...TGGTTTTTGTTCTGCATCAAAAGGCACTGATTCCTTTGAGCAAGTAAGAGCTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000031862.14 ENSMUST00000094623.10 ENSMUST00000114446.8 |
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| CDS-3UTR TCA 90 bp | AACGTCAGCTCCAGCCACGATTCTATTTCCACATCAAACAGATTCCATAAATCAAGTCCTTCCACTTCATaGGAAACATTAACTCTCCGC | + |
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Preference number: 4 (lower is better) Translates to: NVSSSHDSISTSNRFHKSSPSTS*ETLTLR Trigger: GCGGAGAGTTAATGTTTCTCATGAAGTGGAAGGACT...TGATTTATGGAATCTGTTTGATGTGGAAATAGAATCGTGGCTGGAGCTGACGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031862.14 ENSMUST00000114446.8 |
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| 3UTR CAA 72 bp | AGAAAGCTCTTACTTGCTCAAAGGAATCAGTGCCTTTaGATGCAGAACAAAAACCAAAAATATCCCAACTAC | + |
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Preference number: 4 (lower is better) Translates to: RKLLLAQRNQCL*MQNKNQKYPNY Trigger: GTAGTTGGGATATTTTTGGTTTTTGTTCTGCATCAAAAGGCACTGATTCCTTTGAGCAAGTAAGAGCTTTCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 4 transcripts: ENSMUST00000031862.14 ENSMUST00000094623.10 ENSMUST00000114445.8 ENSMUST00000114446.8 |
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