RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CBX1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000018666

Ensembl transcript IDs: ENSMUST00000018810.10, ENSMUST00000079702.4, ENSMUST00000093943.10, ENSMUST00000134585.8

Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCATTCCCTAGTGCTATTGTCTACATGCTAGTCCTAGAACCCCACTaGCACGCTGCCAGCATGGCAAGCCCCAGTGAGCACAAGCACACT +
Preference number: 1 (lower is better)
Translates to: PFPSAIVYMLVLEPH*HAASMASPSEHKHT
Trigger: AGTGTGCTTGTGCTCACTGGGGCTTGCCATGCTGGCAGCGTGGCAGTGGGGTTCTAGGACTAGCATGTAGACAATAGCACTAGGGAATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018810.10
3UTR CCA 90 bp CCTGCTGCAGTGGTACACACACCATGCAATTCCAGCACTGAACAGTaGAGGCATAGGATTCAAAGTTCTAGGCCAGACTGGGCAACACGG +
Preference number: 1 (lower is better)
Translates to: PAAVVHTPCNSSTEQ*RHRIQSSRPDWATR
Trigger: CCGTGTTGCCCAGTCTGGCCTAGAACTTTGAATCCTATGCCTCCACTGTTCAGTGCTGGAATTGCATGGTGTGTGTACCACTGCAGCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093943.10
3UTR TCA 90 bp GAAGTTGAAGATCTGAAAATCCTAAGGGCCCCTACCTGTAACTCATaGGTCCAGGTTGGCAGTCAGGCCGAGGGTCACTATCGAAGGACT +
Preference number: 1 (lower is better)
Translates to: EVEDLKILRAPTCNS*VQVGSQAEGHYRRT
Trigger: AGTCCTTCGATAGTGACCCTCGGCCTGACTGCCAACCTGGACTCATGAGTTACAGGTAGGGGCCCTTAGGATTTTCAGATCTTCAACTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018810.10
3UTR TCA 90 bp ATCTATAGTCATGAAGCTGTGGCAGGCACTTTTGAGAAGCTGAGCTaGGGCAAGAGGGCTGCTGATAAGATGAAGATGCCTGCTGCAGTG +
Preference number: 1 (lower is better)
Translates to: IYSHEAVAGTFEKLS*GKRAADKMKMPAAV
Trigger: CACTGCAGCAGGCATCTTCATCTTATCAGCAGCCCTCTTGCCTCAGCTCAGCTTCTCAAAAGTGCCTGCCACAGCTTCATGACTATAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079702.4
ENSMUST00000093943.10
3UTR GCA 90 bp ATCAGATCAGATCTCATTACAGATGGTTGTGAGCCACTATGTGGTTaGTGGGAATTGAACTCAAGACCTCTGGAAGAGCAGTCGGTGCTT +
Preference number: 1 (lower is better)
Translates to: IRSDLITDGCEPLCG*WELNSRPLEEQSVL
Trigger: AAGCACCGACTGCTCTTCCAGAGGTCTTGAGTTCAATTCCCAGCAACCACATAGTGGCTCACAACCATCTGTAATGAGATCTGATCTGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018810.10
3UTR TCA 90 bp CACTCCAGAAGAAGACATCAGATCAGATCTCATTACAGATGGTTGTaGGCCACTATGTGGTTGCTGGGAATTGAACTCAAGACCTCTGGA +
Preference number: 1 (lower is better)
Translates to: HSRRRHQIRSHYRWL*ATMWLLGIELKTSG
Trigger: TCCAGAGGTCTTGAGTTCAATTCCCAGCAACCACATAGTGGCTCACAACCATCTGTAATGAGATCTGATCTGATGTCTTCTTCTGGAGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018810.10
3UTR CCA 90 bp AGATCAGATCTCATTACAGATGGTTGTGAGCCACTATGTGGTTGCTaGGAATTGAACTCAAGACCTCTGGAAGAGCAGTCGGTGCTTTTA +
Preference number: 1 (lower is better)
Translates to: RSDLITDGCEPLCGC*ELNSRPLEEQSVLL
Trigger: TAAAAGCACCGACTGCTCTTCCAGAGGTCTTGAGTTCAATTCCCAGCAACCACATAGTGGCTCACAACCATCTGTAATGAGATCTGATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018810.10
3UTR CCA 90 bp CTATCGAAGGACTATGTCATCTTAAAGATTTCACACCTGGGCGACTaGAATTTCGAAGGTCCAGCTCTTTTCCTCTGGCATAGAACAGAT +
Preference number: 1 (lower is better)
Translates to: LSKDYVILKISHLGD*NFEGPALFLWHRTD
Trigger: ATCTGTTCTATGCCAGAGGAAAAGAGCTGGACCTTCGAAATTCCAGTCGCCCAGGTGTGAAATCTTTAAGATGACATAGTCCTTCGATAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018810.10
ENSMUST00000134585.8
3UTR-3UTR GCA 90 bp AGACCTCTGGAAGAGCAGTCGGTGCTTTTAACCTCTGAGCCAGCTCTCCAGCCCGTCCTAGAACCCCACTaGCACGCTGCCAGCATGGCA +
Preference number: 2 (lower is better)
Translates to: RPLEEQSVLLTSEPALQPVLEPH*HAASMA
Trigger: TGCCATGCTGGCAGCGTGGCAGTGGGGTTCTAGGAC...GGGCTGGAGAGCTGGCTCAGAGGTTAAAAGCACCGACTGCTCTTCCAGAGGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018810.10
3UTR-3UTR TCA 90 bp GGTTGCTGGGAATTGAACTCAAGACCTCTGGAAGAGCAGTCGGTGCTTTTAACCAGGGCAGGAAGAGTTTaGGTTCAAGGCAAGCCTAGA +
Preference number: 2 (lower is better)
Translates to: GCWELNSRPLEEQSVLLTRAGRV*VQGKPR
Trigger: TCTAGGCTTGCCTTGAACTCAAACTCTTCCTGCCCT...GGTTAAAAGCACCGACTGCTCTTCCAGAGGTCTTGAGTTCAATTCCCAGCAACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018810.10
3UTR-3UTR TCA 90 bp GACACTCCAGAAGAAGACATCAGATCAGATCTCATTACAGATGGTTGTGAGCCACCTACCTGTAACTCATaGGTCCAGGTTGGCAGTCAG +
Preference number: 2 (lower is better)
Translates to: DTPEEDIRSDLITDGCEPPTCNS*VQVGSQ
Trigger: CTGACTGCCAACCTGGACTCATGAGTTACAGGTAGG...TGGCTCACAACCATCTGTAATGAGATCTGATCTGATGTCTTCTTCTGGAGTGTC
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018810.10
3UTR CAA 90 bp GATCTCATTACAGATGGTTGTGAGCCACTATGTGGTTGCTGGGAATaGAACTCAAGACCTCTGGAAGAGCAGTCGGTGCTTTTAACCTCT +
Preference number: 2 (lower is better)
Translates to: DLITDGCEPLCGCWE*NSRPLEEQSVLLTS
Trigger: AGAGGTTAAAAGCACCGACTGCTCTTCCAGAGGTCTTGAGTTCAATTCCCAGCAACCACATAGTGGCTCACAACCATCTGTAATGAGATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018810.10
3UTR-3UTR TCA 90 bp GTTTATGGGGTCAGCCTGATCTTTACTAAGGAGGTGGCAAAGAAGGAGGGTGATAACAGAAGTGAAATGTaGTTCCTCTCCATAGCCTCT +
Preference number: 2 (lower is better)
Translates to: VYGVSLIFTKEVAKKEGDNRSEM*FLSIAS
Trigger: AGAGGCTATGGAGAGGAATCACATTTCACTTCTGTT...ATCACCCTCCTTCTTTGCCACCTCCTTAGTAAAGATCAGGCTGACCCCATAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018810.10
3UTR-3UTR TCA 90 bp CCACTATGTGGTTGCTGGGAATTGAACTCAAGACCTCTGGAAGAGCAGTCGGTGCCTAACCCTCAAAAATaGACAGAATCTTGTTTATGG +
Preference number: 2 (lower is better)
Translates to: PLCGCWELNSRPLEEQSVPNPQK*TESCLW
Trigger: CCATAAACAAGATTCTGTTCATTTTTGAGGGTTAGG...CACCGACTGCTCTTCCAGAGGTCTTGAGTTCAATTCCCAGCAACCACATAGTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000018810.10
3UTR-3UTR CCA 90 bp TGGTTGCTGGGAATTGAACTCAAGACCTCTGGAAGAGCAGTCGGTGCTTTTAACTCTTTACTAAGGAGGTaGCAAAGAAGGAGGGTGATT +
Preference number: 2 (lower is better)
Translates to: WLLGIELKTSGRAVGAFNSLLRR*QRRRVI
Trigger: AATCACCCTCCTTCTTTGCCACCTCCTTAGTAAAGA...GTTAAAAGCACCGACTGCTCTTCCAGAGGTCTTGAGTTCAATTCCCAGCAACCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018810.10
3UTR-3UTR TCA 90 bp TACTATATTAATAAACTGAGGCCATTTAAAAGACTAGGGCACAAGATTGAGCCTGCACTTTTGAGAAGCTaGGCTGAGGCAAGAGGGCTG +
Preference number: 2 (lower is better)
Translates to: YYINKLRPFKRLGHKIEPALLRS*AEARGL
Trigger: CAGCCCTCTTGCCTCAGCTCAGCTTCTCAAAAGTGC...AGGCTCAATCTTGTGCCCTAGTCTTTTAAATGGCCTCAGTTTATTAATATAGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079702.4
ENSMUST00000093943.10
3UTR-3UTR CCA 90 bp GGTTGCTGGGAATTGAACTCAAGACCTCTGGAAGAGCAGTCGGTGCTTTTAACCCTTTTCATTGACTGTTaGAAAGTACTGTCATCATGT +
Preference number: 2 (lower is better)
Translates to: GCWELNSRPLEEQSVLLTLFIDC*KVLSSC
Trigger: ACATGATGACAGTACTTTCCAACAGTCAATGAAAAG...GGTTAAAAGCACCGACTGCTCTTCCAGAGGTCTTGAGTTCAATTCCCAGCAACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018810.10
3UTR-3UTR TCA 90 bp GAAGACATCAGATCAGATCTCATTACAGATGGTTGTGAGCCACTATGTGGTTGCGAGAATGACTTTTCCTaGCCTGAACTCCTTTTCATT +
Preference number: 2 (lower is better)
Translates to: EDIRSDLITDGCEPLCGCENDFS*PELLFI
Trigger: AATGAAAAGGAGTTCAGGTCAGGAAAAGTCATTCTC...GCAACCACATAGTGGCTCACAACCATCTGTAATGAGATCTGATCTGATGTCTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018810.10
3UTR-3UTR CCA 90 bp GACACTCCAGAAGAAGACATCAGATCAGATCTCATTACAGATGGTTGTGAGCCAACAGAATCTTGTTTATaGGGTCAGCCTGATCTTTAC +
Preference number: 2 (lower is better)
Translates to: DTPEEDIRSDLITDGCEPTESCL*GQPDLY
Trigger: GTAAAGATCAGGCTGACCCCATAAACAAGATTCTGT...TGGCTCACAACCATCTGTAATGAGATCTGATCTGATGTCTTCTTCTGGAGTGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018810.10
3UTR CAA 90 bp CATCCAACTGAGTGTTTAATACATAATGCCAATTCCTCAAACTTTTaGGTGACAACATATGCTGATGCCATCCAACTGACTAAGCTACTT +
Preference number: 2 (lower is better)
Translates to: HPTECLIHNANSSNF*VTTYADAIQLTKLL
Trigger: AAGTAGCTTAGTCAGTTGGATGGCATCAGCATATGTTGTCACCAAAAAGTTTGAGGAATTGGCATTATGTATTAAACACTCAGTTGGATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000093943.10
3UTR GCA 72 bp AGTGCTATTGTCTACATGCTAGTCCTAGAACCCCACTaGCACGCTGCCAGCATGGCAAGCCCCAGTGAGCAC +
Preference number: 3 (lower is better)
Translates to: SAIVYMLVLEPH*HAASMASPSEH
Trigger: GTGCTCACTGGGGCTTGCCATGCTGGCAGCGTGGCAGTGGGGTTCTAGGACTAGCATGTAGACAATAGCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018810.10
3UTR GCA 72 bp ACAAACAGCCCCCATTTCCTCTCAGAGCGGCAGAGCTaGCACACTCATGTCCACAGCAGAAGGAACAGCCTT +
Preference number: 3 (lower is better)
Translates to: TNSPHFLSERQS*HTHVHSRRNSL
Trigger: AAGGCTGTTCCTTCTGCTGTGGACATGAGTGTGGCAGCTCTGCCGCTCTGAGAGGAAATGGGGGCTGTTTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000018810.10
3UTR CCA 72 bp GCAGCTTTGGTAACTCAGAACTGGCTTTGTCCTTTGTaGGCCACTTTGAGCTCAGGCTGGGAGCACCTTGGC +
Preference number: 3 (lower is better)
Translates to: AALVTQNWLCPL*ATLSSGWEHLG
Trigger: GCCAAGGTGCTCCCAGCCTGAGCTCAAAGTGGCCCACAAAGGACAAAGCCAGTTCTGAGTTACCAAAGCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134585.8
3UTR TCA 72 bp GATCTGAAAATCCTAAGGGCCCCTACCTGTAACTCATaGGTCCAGGTTGGCAGTCAGGCCGAGGGTCACTAT +
Preference number: 3 (lower is better)
Translates to: DLKILRAPTCNS*VQVGSQAEGHY
Trigger: ATAGTGACCCTCGGCCTGACTGCCAACCTGGACTCATGAGTTACAGGTAGGGGCCCTTAGGATTTTCAGATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018810.10
3UTR TCA 72 bp CATGAAGCTGTGGCAGGCACTTTTGAGAAGCTGAGCTaGGGCAAGAGGGCTGCTGATAAGATGAAGATGCCT +
Preference number: 3 (lower is better)
Translates to: HEAVAGTFEKLS*GKRAADKMKMP
Trigger: AGGCATCTTCATCTTATCAGCAGCCCTCTTGCCTCAGCTCAGCTTCTCAAAAGTGCCTGCCACAGCTTCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079702.4
ENSMUST00000093943.10
3UTR CCA 72 bp GTGGTACACACACCATGCAATTCCAGCACTGAACAGTaGAGGCATAGGATTCAAAGTTCTAGGCCAGACTGG +
Preference number: 3 (lower is better)
Translates to: VVHTPCNSSTEQ*RHRIQSSRPDW
Trigger: CCAGTCTGGCCTAGAACTTTGAATCCTATGCCTCCACTGTTCAGTGCTGGAATTGCATGGTGTGTGTACCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093943.10
3UTR CCA 72 bp CTCATTACAGATGGTTGTGAGCCACTATGTGGTTGCTaGGAATTGAACTCAAGACCTCTGGAAGAGCAGTCG +
Preference number: 3 (lower is better)
Translates to: LITDGCEPLCGC*ELNSRPLEEQS
Trigger: CGACTGCTCTTCCAGAGGTCTTGAGTTCAATTCCCAGCAACCACATAGTGGCTCACAACCATCTGTAATGAG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018810.10
3UTR CCA 72 bp GACTATGTCATCTTAAAGATTTCACACCTGGGCGACTaGAATTTCGAAGGTCCAGCTCTTTTCCTCTGGCAT +
Preference number: 3 (lower is better)
Translates to: DYVILKISHLGD*NFEGPALFLWH
Trigger: ATGCCAGAGGAAAAGAGCTGGACCTTCGAAATTCCAGTCGCCCAGGTGTGAAATCTTTAAGATGACATAGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018810.10
ENSMUST00000134585.8
3UTR TCA 72 bp AGAAGACATCAGATCAGATCTCATTACAGATGGTTGTaGGCCACTATGTGGTTGCTGGGAATTGAACTCAAG +
Preference number: 3 (lower is better)
Translates to: RRHQIRSHYRWL*ATMWLLGIELK
Trigger: CTTGAGTTCAATTCCCAGCAACCACATAGTGGCTCACAACCATCTGTAATGAGATCTGATCTGATGTCTTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018810.10
3UTR TCA 72 bp TTCTCTTCCATCTCCCATAGGCCATCCTGCAATACTTaGGCCAATGGCTTAGATGGACAAACTGATATAACT +
Preference number: 3 (lower is better)
Translates to: FSSISHRPSCNT*ANGLDGQTDIT
Trigger: AGTTATATCAGTTTGTCCATCTAAGCCATTGGCTCAAGTATTGCAGGATGGCCTATGGGAGATGGAAGAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134585.8
CDS-3UTR CCA 90 bp CTGCTGCAGTGGTACACACACCATGCAATTCCAGCACTGAACAGTGGAGGCATAAGTTCTAGGCCAGACTaGGCAACACGGGAAGAAGAC +
Preference number: 4 (lower is better)
Translates to: LLQWYTHHAIPALNSGGISSRPD*ATREED
Trigger: GTCTTCTTCCCGTGTTGCCCAGTCTGGCCTAGAACT...TATGCCTCCACTGTTCAGTGCTGGAATTGCATGGTGTGTGTACCACTGCAGCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079702.4
3UTR CAA 72 bp AAGAGAATGACTTTTCCTGACCTGAACTCCTTTTCATaGACTGTTGGAAAGTACTGTCATCATGTGCTGCAT +
Preference number: 4 (lower is better)
Translates to: KRMTFPDLNSFS*TVGKYCHHVLH
Trigger: ATGCAGCACATGATGACAGTACTTTCCAACAGTCAATGAAAAGGAGTTCAGGTCAGGAAAAGTCATTCTCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018810.10
3UTR CAA 72 bp GAGTGTTTAATACATAATGCCAATTCCTCAAACTTTTaGGTGACAACATATGCTGATGCCATCCAACTGACT +
Preference number: 4 (lower is better)
Translates to: ECLIHNANSSNF*VTTYADAIQLT
Trigger: AGTCAGTTGGATGGCATCAGCATATGTTGTCACCAAAAAGTTTGAGGAATTGGCATTATGTATTAAACACTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000093943.10