Pregenerated sensors for CBR4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031641Ensembl transcript IDs: ENSMUST00000034058.14, ENSMUST00000126575.2
Found 90 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GATCGCCCTGACTTGACCAGGCTGACCTTGAACTCTTGGCCATCCTaGCCCAGCTTTGCGTGCCCGGATGACAGGGCTACACCCAGCTCT | + |
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Preference number: 1 (lower is better) Translates to: DRPDLTRLTLNSWPS*PSFACPDDRATPSS Trigger: AGAGCTGGGTGTAGCCCTGTCATCCGGGCACGCAAAGCTGGGTCAGGATGGCCAAGAGTTCAAGGTCAGCCTGGTCAAGTCAGGGCGATC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR CCA 90 bp | CCAGTGCTGTCCAGGCTGAGGAAGCTCAGTGGGAAAGTCCTTGTCTaGCGCCTGGCTGGAGACCCTGAGCTTGATCCAGCAGCACAAAAC | + |
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Preference number: 1 (lower is better) Translates to: PVLSRLRKLSGKVLV*RLAGDPELDPAAQN Trigger: GTTTTGTGCTGCTGGATCAAGCTCAGGGTCTCCAGCCAGGCGCCAGACAAGGACTTTCCCACTGAGCTTCCTCAGCCTGGACAGCACTGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR TCA 90 bp | CCTGGCTCCACTTCCTGTTTCCTCTCTCTGCTTCCAGTATGTCGATaGAATGCAGCCAGCAAGTGCTCTTCTAGTACCACGCTTGCCCTG | + |
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Preference number: 1 (lower is better) Translates to: PGSTSCFLSLLPVCR*NAASKCSSSTTLAL Trigger: CAGGGCAAGCGTGGTACTAGAAGAGCACTTGCTGGCTGCATTTCATCGACATACTGGAAGCAGAGAGAGGAAACAGGAAGTGGAGCCAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR TCA 90 bp | AAGGTGATGACTTGCTGGAGGAAGTATGTCACTGGGGGTGGGCTTTaGGATTTTACATCCTGGCTCCACTTCCTGTTTCCTCTCTCTGCT | + |
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Preference number: 1 (lower is better) Translates to: KVMTCWRKYVTGGGL*DFTSWLHFLFPLSA Trigger: AGCAGAGAGAGGAAACAGGAAGTGGAGCCAGGATGTAAAATCTCAAAGCCCACCCCCAGTGACATACTTCCTCCAGCAAGTCATCACCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR GCA 90 bp | GAAAATTACCAATACCCTCACCCTCCTCTGGCCACTAAAGGCATATaGATGCATGCCCGCACACTCACATGTATGTGCCACACACACACA | + |
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Preference number: 1 (lower is better) Translates to: ENYQYPHPPLATKGI*MHARTLTCMCHTHT Trigger: TGTGTGTGTGTGGCACATACATGTGAGTGTGCGGGCATGCATGCATATGCCTTTAGTGGCCAGAGGAGGGTGAGGGTATTGGTAATTTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR TCA 90 bp | ACCTACAACCTCAGCATTTGGTACAATAAGGCAGAAGGACTGCTGTaGGTTCAAGGCAAGCATGGGATACATAGTAAATTCAGGGCATCC | + |
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Preference number: 1 (lower is better) Translates to: TYNLSIWYNKAEGLL*VQGKHGIHSKFRAS Trigger: GGATGCCCTGAATTTACTATGTATCCCATGCTTGCCTTGAACTCACAGCAGTCCTTCTGCCTTATTGTACCAAATGCTGAGGTTGTAGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR CCA 90 bp | CTCAAGTCAATAAATAGGAAAATTACCAATACCCTCACCCTCCTCTaGCCACTAAAGGCATATGCATGCATGCCCGCACACTCACATGTA | + |
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Preference number: 1 (lower is better) Translates to: LKSINRKITNTLTLL*PLKAYACMPAHSHV Trigger: TACATGTGAGTGTGCGGGCATGCATGCATATGCCTTTAGTGGCCAGAGGAGGGTGAGGGTATTGGTAATTTTCCTATTTATTGACTTGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR TCA 90 bp | AATATCATAAGAATGTGTTTTTGTTTTAATCACAGGTGTGGGATATaGGGCTGCTTCAGACGGTCCACAGCAGCTGACTATGATTTGCCT | + |
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Preference number: 1 (lower is better) Translates to: NIIRMCFCFNHRCGI*GCFRRSTAADYDLP Trigger: AGGCAAATCATAGTCAGCTGCTGTGGACCGTCTGAAGCAGCCTCATATCCCACACCTGTGATTAAAACAAAAACACATTCTTATGATATT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR TCA 90 bp | GTGTCCTTGAGTTTGCTATACTCCTTCCTTAGCTGCTCAAGGAGCTaGGGTTATAGGCACTTGTTTGTTTGTTTGTTTGTTTGTTTGTTT | + |
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Preference number: 1 (lower is better) Translates to: VSLSLLYSFLSCSRS*GYRHLFVCLFVCLF Trigger: AAACAAACAAACAAACAAACAAACAAACAAGTGCCTATAACCTCAGCTCCTTGAGCAGCTAAGGAAGGAGTATAGCAAACTCAAGGACAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR GCA 90 bp | TGTTTGTTTGTTTGTTTGTTTGTTTTTCAAGAGAGGGTTTCTCTGTaGAGCTTTGGCTGTCCTGAACTCAGTGATTCACTTGCTTCTCAA | + |
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Preference number: 1 (lower is better) Translates to: CLFVCLFVFQERVSL*SFGCPELSDSLASQ Trigger: TTGAGAAGCAAGTGAATCACTGAGTTCAGGACAGCCAAAGCTGCACAGAGAAACCCTCTCTTGAAAAACAAACAAACAAACAAACAAACA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR-3UTR TCA 90 bp | CTTTTGAAGACCAGTGCTGTCCAGGCTGAGGAAGCTCAGTGGGAAAGTCCTTGTCTTTGCGTGCCCGGATaGCAGGGCTACACCCAGCTC | + |
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Preference number: 2 (lower is better) Translates to: LLKTSAVQAEEAQWESPCLCVPG*QGYTQL Trigger: GAGCTGGGTGTAGCCCTGTCATCCGGGCACGCAAAG...ACAAGGACTTTCCCACTGAGCTTCCTCAGCCTGGACAGCACTGGTCTTCAAAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR-3UTR GCA 90 bp | CCACTTCCTGTTTCCTCTCTCTGCTTCCAGTATGTCGATGAAATGCAGCCAGCAGCTTGCCCTGACTGCTaGCCAGTCTTCCCTGCCATG | + |
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Preference number: 2 (lower is better) Translates to: PLPVSSLCFQYVDEMQPAACPDC*PVFPAM Trigger: CATGGCAGGGAAGACTGGGCAGCAGTCAGGGCAAGC...TGCTGGCTGCATTTCATCGACATACTGGAAGCAGAGAGAGGAAACAGGAAGTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR-3UTR TCA 90 bp | CTTTTGAAGACCAGTGCTGTCCAGGCTGAGGAAGCTCAGTGGGAAAGTCCTTGTGCAGAAGGACTGCTGTaGGTTCAAGGCAAGCATGGG | + |
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Preference number: 2 (lower is better) Translates to: LLKTSAVQAEEAQWESPCAEGLL*VQGKHG Trigger: CCCATGCTTGCCTTGAACTCACAGCAGTCCTTCTGC...ACAAGGACTTTCCCACTGAGCTTCCTCAGCCTGGACAGCACTGGTCTTCAAAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR CAA 90 bp | GAAGGTGATGACTTGCTGGAGGAAGTATGTCACTGGGGGTGGGCTTaGAGATTTTACATCCTGGCTCCACTTCCTGTTTCCTCTCTCTGC | + |
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Preference number: 2 (lower is better) Translates to: EGDDLLEEVCHWGWA*RFYILAPLPVSSLC Trigger: GCAGAGAGAGGAAACAGGAAGTGGAGCCAGGATGTAAAATCTCAAAGCCCACCCCCAGTGACATACTTCCTCCAGCAAGTCATCACCTTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR-3UTR GCA 90 bp | TGTCTTCATTTCTGTTCTCAAGCAAGCACTCTTTTGAAGACCAGTGCTGTCCAGAGCTGGGCATGTCCATaGATGCCTGCAACCCCAGAC | + |
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Preference number: 2 (lower is better) Translates to: CLHFCSQASTLLKTSAVQSWACP*MPATPD Trigger: GTCTGGGGTTGCAGGCATGCATGGACATGCCCAGCT...CTGGACAGCACTGGTCTTCAAAAGAGTGCTTGCTTGAGAACAGAAATGAAGACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR-3UTR CCA 90 bp | TTTGTTTTAATCACAGGTGTGGGATATGAGGCTGCTTCAGACGGTCCACAGCAGACCCTCACCCTCCTCTaGCCACTAAAGGCATATGCA | + |
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Preference number: 2 (lower is better) Translates to: FVLITGVGYEAASDGPQQTLTLL*PLKAYA Trigger: TGCATATGCCTTTAGTGGCCAGAGGAGGGTGAGGGT...CTGCTGTGGACCGTCTGAAGCAGCCTCATATCCCACACCTGTGATTAAAACAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR-3UTR GCA 90 bp | CTTTTGAAGACCAGTGCTGTCCAGGCTGAGGAAGCTCAGTGGGAAAGTCCTTGTTGGTTGGTGGTTGAATaGTGTTGGTTGTTGTTGGTC | + |
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Preference number: 2 (lower is better) Translates to: LLKTSAVQAEEAQWESPCWLVVE*CWLLLV Trigger: GACCAACAACAACCAACAGCATTCAACCACCAACCA...ACAAGGACTTTCCCACTGAGCTTCCTCAGCCTGGACAGCACTGGTCTTCAAAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR-3UTR TCA 90 bp | GAACTGCTATATACAAAGTCAACTGCACCGCACTTAAATAACCAGGTTATTTTGAGTCAGGTAGAGAGGTaGTGGGAGGGGGAGTGGTGT | + |
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Preference number: 2 (lower is better) Translates to: ELLYTKSTAPHLNNQVILSQVER*WEGEWC Trigger: ACACCACTCCCCCTCCCATCACCTCTCTACCTGACT...CAAAATAACCTGGTTATTTAAGTGCGGTGCAGTTGACTTTGTATATAGCAGTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR-3UTR GCA 90 bp | TTAAATAACCAGGTTATTTTGCTGAGCAGCTCAGAGAAAAGTAGCATCACTCTAATGTCCATGCATGCCTaGAACCCCAGACAGGGGCAG | + |
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Preference number: 2 (lower is better) Translates to: LNNQVILLSSSEKSSITLMSMHA*NPRQGQ Trigger: CTGCCCCTGTCTGGGGTTGCAGGCATGCATGGACAT...TAGAGTGATGCTACTTTTCTCTGAGCTGCTCAGCAAAATAACCTGGTTATTTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR-3UTR TCA 90 bp | TTTGTTTTAATCACAGGTGTGGGATATGAGGCTGCTTCAGACGGTCCACAGCAGGTAGCATCCGTTAGCTaGTTTGTTTCCATTAGCAAA | + |
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Preference number: 2 (lower is better) Translates to: FVLITGVGYEAASDGPQQVASVS*FVSISK Trigger: TTTGCTAATGGAAACAAATCAGCTAACGGATGCTAC...CTGCTGTGGACCGTCTGAAGCAGCCTCATATCCCACACCTGTGATTAAAACAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR-3UTR TCA 90 bp | GAACTGCTATATACAAAGTCAACTGCACCGCACTTAAATAACCAGGTTATTTTGCCCCAGAAGGTATGGTaGAATACGGCCTCAAAATGC | + |
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Preference number: 2 (lower is better) Translates to: ELLYTKSTAPHLNNQVILPQKVW*NTASKC Trigger: GCATTTTGAGGCCGTATTTCACCATACCTTCTGGGG...CAAAATAACCTGGTTATTTAAGTGCGGTGCAGTTGACTTTGTATATAGCAGTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR CAA 90 bp | GCTGAGGTTATAGGCACTTGTTTGTTTGTTTGTTTGTTTGTTTGTTaGTTTTTCAAGAGAGGGTTTCTCTGTGCAGCTTTGGCTGTCCTG | + |
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Preference number: 2 (lower is better) Translates to: AEVIGTCLFVCLFVC*FFKRGFLCAALAVL Trigger: CAGGACAGCCAAAGCTGCACAGAGAAACCCTCTCTTGAAAAACAAACAAACAAACAAACAAACAAACAAACAAGTGCCTATAACCTCAGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR-3UTR GCA 90 bp | TTAAATAACCAGGTTATTTTGCTGAGCAGCTCAGAGAAAAGTAGCATCACTCTACTAAAGGCATATGCATaGATGCCCGCACACTCACAT | + |
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Preference number: 2 (lower is better) Translates to: LNNQVILLSSSEKSSITLLKAYA*MPAHSH Trigger: ATGTGAGTGTGCGGGCATGCATGCATATGCCTTTAG...TAGAGTGATGCTACTTTTCTCTGAGCTGCTCAGCAAAATAACCTGGTTATTTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR-3UTR CCA 90 bp | AAAGTTCAAGGCAAAAGGAATTCTATCTATATTTGCAGTCAGTTCTGTGTCTTCAGATGGCTGACCAGATaGGAGCACTTACTGAGTCTC | + |
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Preference number: 2 (lower is better) Translates to: KVQGKRNSIYICSQFCVFRWLTR*EHLLSL Trigger: GAGACTCAGTAAGTGCTCCCATCTGGTCAGCCATCT...GAAGACACAGAACTGACTGCAAATATAGATAGAATTCCTTTTGCCTTGAACTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR-3UTR GCA 90 bp | AAAGTTCAAGGCAAAAGGAATTCTATCTATATTTGCAGTCAGTTCTGTGTCTTCAGGCATATGCATGCATaGCCGCACACTCACATGTAT | + |
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Preference number: 2 (lower is better) Translates to: KVQGKRNSIYICSQFCVFRHMHA*PHTHMY Trigger: ATACATGTGAGTGTGCGGGCATGCATGCATATGCCT...GAAGACACAGAACTGACTGCAAATATAGATAGAATTCCTTTTGCCTTGAACTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR CAA 90 bp | ACTCCTTCCTTAGCTGCTCAAGGAGCTGAGGTTATAGGCACTTGTTaGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTCAAGAGAGGGTTT | + |
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Preference number: 2 (lower is better) Translates to: TPSLAAQGAEVIGTC*FVCLFVCLFFKRGF Trigger: AAACCCTCTCTTGAAAAACAAACAAACAAACAAACAAACAAACAAACAAGTGCCTATAACCTCAGCTCCTTGAGCAGCTAAGGAAGGAGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR CAA 90 bp | AAGACAGAGAATTCACACCCTTTACAACTGGTCACACTTTGTTTTTaGAGACATGTTCATACAAAGATGGAATCCTTTGTAGCATCCGTT | + |
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Preference number: 2 (lower is better) Translates to: KTENSHPLQLVTLCF*RHVHTKMESFVASV Trigger: AACGGATGCTACAAAGGATTCCATCTTTGTATGAACATGTCTCAAAAAACAAAGTGTGACCAGTTGTAAAGGGTGTGAATTCTCTGTCTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR-3UTR TCA 90 bp | TTAAATAACCAGGTTATTTTGCTGAGCAGCTCAGAGAAAAGTAGCATCACTCTAGCTGCTCAAGTAATATaGTGGACTGAATGTGAAATG | + |
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Preference number: 2 (lower is better) Translates to: LNNQVILLSSSEKSSITLAAQVI*WTECEM Trigger: CATTTCACATTCAGTCCATCATATTACTTGAGCAGC...TAGAGTGATGCTACTTTTCTCTGAGCTGCTCAGCAAAATAACCTGGTTATTTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR-3UTR GCA 90 bp | AAAGTTCAAGGCAAAAGGAATTCTATCTATATTTGCAGTCAGTTCTGTGTCTTCAAAGACCCTTTTCTCTaGTATATTGCTTTTGGTCAT | + |
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Preference number: 2 (lower is better) Translates to: KVQGKRNSIYICSQFCVFKDPFL*YIAFGH Trigger: ATGACCAAAAGCAATATAGCAGAGAAAAGGGTCTTT...GAAGACACAGAACTGACTGCAAATATAGATAGAATTCCTTTTGCCTTGAACTTT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR CCA 72 bp | TCCAGGCTGAGGAAGCTCAGTGGGAAAGTCCTTGTCTaGCGCCTGGCTGGAGACCCTGAGCTTGATCCAGCA | + |
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Preference number: 3 (lower is better) Translates to: SRLRKLSGKVLV*RLAGDPELDPA Trigger: TGCTGGATCAAGCTCAGGGTCTCCAGCCAGGCGCCAGACAAGGACTTTCCCACTGAGCTTCCTCAGCCTGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR TCA 72 bp | GACTTGACCAGGCTGACCTTGAACTCTTGGCCATCCTaGCCCAGCTTTGCGTGCCCGGATGACAGGGCTACA | + |
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Preference number: 3 (lower is better) Translates to: DLTRLTLNSWPS*PSFACPDDRAT Trigger: TGTAGCCCTGTCATCCGGGCACGCAAAGCTGGGTCAGGATGGCCAAGAGTTCAAGGTCAGCCTGGTCAAGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR TCA 72 bp | CTCTTGGCCATCCTGACCCAGCTTTGCGTGCCCGGATaGCAGGGCTACACCCAGCTCTTCATATGGTCCTTA | + |
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Preference number: 3 (lower is better) Translates to: LLAILTQLCVPG*QGYTQLFIWSL Trigger: TAAGGACCATATGAAGAGCTGGGTGTAGCCCTGTCATCCGGGCACGCAAAGCTGGGTCAGGATGGCCAAGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR GCA 72 bp | CAATACCCTCACCCTCCTCTGGCCACTAAAGGCATATaGATGCATGCCCGCACACTCACATGTATGTGCCAC | + |
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Preference number: 3 (lower is better) Translates to: QYPHPPLATKGI*MHARTLTCMCH Trigger: GTGGCACATACATGTGAGTGTGCGGGCATGCATGCATATGCCTTTAGTGGCCAGAGGAGGGTGAGGGTATTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR CCA 72 bp | TGCCCAGTCTTCCCTGCCATGATAGCCTGTACCATCTaGACCCACACCCATCAAAAGACCCTTTTCTCTGCT | + |
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Preference number: 3 (lower is better) Translates to: CPVFPAMIACTI*THTHQKTLFSA Trigger: AGCAGAGAAAAGGGTCTTTTGATGGGTGTGGGTCCAGATGGTACAGGCTATCATGGCAGGGAAGACTGGGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR CCA 72 bp | GACAGGGGCAGAGACAGGAAGATTTCAAGAGGTCACTaGCTAGCCATCCTAGCCAAAATAGCAAACCTCTGG | + |
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Preference number: 3 (lower is better) Translates to: DRGRDRKISRGH*LAILAKIANLW Trigger: CCAGAGGTTTGCTATTTTGGCTAGGATGGCTAGCCAGTGACCTCTTGAAATCTTCCTGTCTCTGCCCCTGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR TCA 72 bp | ACTTGCTGGAGGAAGTATGTCACTGGGGGTGGGCTTTaGGATTTTACATCCTGGCTCCACTTCCTGTTTCCT | + |
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Preference number: 3 (lower is better) Translates to: TCWRKYVTGGGL*DFTSWLHFLFP Trigger: AGGAAACAGGAAGTGGAGCCAGGATGTAAAATCTCAAAGCCCACCCCCAGTGACATACTTCCTCCAGCAAGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR GCA 72 bp | GAGTTTTGTTCTGTTCTGAACCTGGGAACTTGTTCATaGTGGGCAAGCACTCTACCACATCACCAGTCCGGT | + |
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Preference number: 3 (lower is better) Translates to: EFCSVLNLGTCS*WASTLPHHQSG Trigger: ACCGGACTGGTGATGTGGTAGAGTGCTTGCCCAGCATGAACAAGTTCCCAGGTTCAGAACAGAACAAAACTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR-3UTR CAA 90 bp | TGTCTTCATTTCTGTTCTCAAGCAAGCACTCTTTTGAAGACCAGTGCTGTCCAGGCAGCTGACTATGATTaGCCTCACACCCTAGCAGGG | + |
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Preference number: 3 (lower is better) Translates to: CLHFCSQASTLLKTSAVQAADYD*PHTLAG Trigger: CCCTGCTAGGGTGTGAGGCAAATCATAGTCAGCTGC...CTGGACAGCACTGGTCTTCAAAAGAGTGCTTGCTTGAGAACAGAAATGAAGACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR CCA 72 bp | TTAGAAGGTGATGACTTGCTGGAGGAAGTATGTCACTaGGGGTGGGCTTTGAGATTTTACATCCTGGCTCCA | + |
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Preference number: 3 (lower is better) Translates to: LEGDDLLEEVCH*GWALRFYILAP Trigger: TGGAGCCAGGATGTAAAATCTCAAAGCCCACCCCCAGTGACATACTTCCTCCAGCAAGTCATCACCTTCTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR CCA 72 bp | GAAGAGGTAGTTTGCTGGTTGGTGGTTGAATGCTGTTaGTTGTTGTTGGTCGTTTGGGAAGGTTGGCTACTG | + |
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Preference number: 3 (lower is better) Translates to: EEVVCWLVVECC*LLLVVWEGWLL Trigger: CAGTAGCCAACCTTCCCAAACGACCAACAACAACCAACAGCATTCAACCACCAACCAGCAAACTACCTCTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR TCA 72 bp | TGTGTCTTCATTTCTGTTCTCAAGCAAGCACTCTTTTaGAGACCAGTGCTGTCCAGGCTGAGGAAGCTCAGT | + |
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Preference number: 3 (lower is better) Translates to: CVFISVLKQALF*RPVLSRLRKLS Trigger: ACTGAGCTTCCTCAGCCTGGACAGCACTGGTCTTCAAAAGAGTGCTTGCTTGAGAACAGAAATGAAGACACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR CCA 72 bp | ATAAATAGGAAAATTACCAATACCCTCACCCTCCTCTaGCCACTAAAGGCATATGCATGCATGCCCGCACAC | + |
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Preference number: 3 (lower is better) Translates to: INRKITNTLTLL*PLKAYACMPAH Trigger: GTGTGCGGGCATGCATGCATATGCCTTTAGTGGCCAGAGGAGGGTGAGGGTATTGGTAATTTTCCTATTTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR CCA 72 bp | TTTTGTTCTGTTCTGAACCTGGGAACTTGTTCATGCTaGGCAAGCACTCTACCACATCACCAGTCCGGTTTA | + |
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Preference number: 3 (lower is better) Translates to: FCSVLNLGTCSC*ASTLPHHQSGL Trigger: TAAACCGGACTGGTGATGTGGTAGAGTGCTTGCCCAGCATGAACAAGTTCCCAGGTTCAGAACAGAACAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR-3UTR CAA 90 bp | CTTTTGAAGACCAGTGCTGTCCAGGCTGAGGAAGCTCAGTGGGAAAGTCCTTGTCCTTTAATATCCAGCTaGATACAGGTGTGTTACAAT | + |
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Preference number: 3 (lower is better) Translates to: LLKTSAVQAEEAQWESPCPLISS*IQVCYN Trigger: ATTGTAACACACCTGTATCAAGCTGGATATTAAAGG...ACAAGGACTTTCCCACTGAGCTTCCTCAGCCTGGACAGCACTGGTCTTCAAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR-3UTR CAA 90 bp | CATGGGATACATAGTAAATTCAGGGCATCCATCCAGGGCTACAGAGTGACATCCCAACAGTCTAGAAGGTaGATGCCTTTAATATCCAGC | + |
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Preference number: 3 (lower is better) Translates to: HGIHSKFRASIQGYRVTSQQSRR*MPLISS Trigger: GCTGGATATTAAAGGCATCAACCTTCTAGACTGTTG...GGATGTCACTCTGTAGCCCTGGATGGATGCCCTGAATTTACTATGTATCCCATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR-3UTR CAA 90 bp | TGTCTTCATTTCTGTTCTCAAGCAAGCACTCTTTTGAAGACCAGTGCTGTCCAGACACCTGGTCCCTGGTaGGTAGCATTGTTTGGAAAA | + |
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Preference number: 3 (lower is better) Translates to: CLHFCSQASTLLKTSAVQTPGPW*VALFGK Trigger: TTTTCCAAACAATGCTACCAACCAGGGACCAGGTGT...CTGGACAGCACTGGTCTTCAAAAGAGTGCTTGCTTGAGAACAGAAATGAAGACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR-3UTR CAA 90 bp | TTTGTTTTAATCACAGGTGTGGGATATGAGGCTGCTTCAGACGGTCCACAGCAGAATAACCAGGTTATTTaGCTGAGCAGCTCAGAGAAA | + |
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Preference number: 3 (lower is better) Translates to: FVLITGVGYEAASDGPQQNNQVI*LSSSEK Trigger: TTTCTCTGAGCTGCTCAGCAAAATAACCTGGTTATT...CTGCTGTGGACCGTCTGAAGCAGCCTCATATCCCACACCTGTGATTAAAACAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
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| 3UTR TCA 72 bp | AGAATGTGTTTTTGTTTTAATCACAGGTGTGGGATATaGGGCTGCTTCAGACGGTCCACAGCAGCTGACTAT | + |
|
Preference number: 3 (lower is better) Translates to: RMCFCFNHRCGI*GCFRRSTAADY Trigger: ATAGTCAGCTGCTGTGGACCGTCTGAAGCAGCCTCATATCCCACACCTGTGATTAAAACAAAAACACATTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
||
| 3UTR CCA 72 bp | TCTCTCTCTCACACACACACACACACACACACACAATaGCTCATACCTACAACCTCAGCATTTGGTACAATA | + |
|
Preference number: 3 (lower is better) Translates to: SLSHTHTHTHTQ*LIPTTSAFGTI Trigger: TATTGTACCAAATGCTGAGGTTGTAGGTATGAGCCATTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
||
| 3UTR TCA 72 bp | CTCAGCATTTGGTACAATAAGGCAGAAGGACTGCTGTaGGTTCAAGGCAAGCATGGGATACATAGTAAATTC | + |
|
Preference number: 3 (lower is better) Translates to: LSIWYNKAEGLL*VQGKHGIHSKF Trigger: GAATTTACTATGTATCCCATGCTTGCCTTGAACTCACAGCAGTCCTTCTGCCTTATTGTACCAAATGCTGAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
||
| 3UTR CCA 72 bp | TTGGTGGTTGAATGCTGTTGGTTGTTGTTGGTCGTTTaGGAAGGTTGGCTACTGTTTAATAGTAGCTGTAGT | + |
|
Preference number: 3 (lower is better) Translates to: LVVECCWLLLVV*EGWLLFNSSCS Trigger: ACTACAGCTACTATTAAACAGTAGCCAACCTTCCCAAACGACCAACAACAACCAACAGCATTCAACCACCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
||
| 3UTR CCA 72 bp | GAATGCTGTTGGTTGTTGTTGGTCGTTTGGGAAGGTTaGCTACTGTTTAATAGTAGCTGTAGTGAAAGAAAA | + |
|
Preference number: 3 (lower is better) Translates to: ECCWLLLVVWEG*LLFNSSCSERK Trigger: TTTTCTTTCACTACAGCTACTATTAAACAGTAGCCAACCTTCCCAAACGACCAACAACAACCAACAGCATTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
||
| 3UTR TCA 72 bp | CATACAAAGATGGAATCCTTTGTAGCATCCGTTAGCTaGTTTGTTTCCATTAGCAAATGTCACCCATATAGA | + |
|
Preference number: 3 (lower is better) Translates to: HTKMESFVASVS*FVSISKCHPYR Trigger: TCTATATGGGTGACATTTGCTAATGGAAACAAATCAGCTAACGGATGCTACAAAGGATTCCATCTTTGTATG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
||
| CDS-3UTR CCA 90 bp | CATGGGATACATAGTAAATTCAGGGCATCCATCCAGGGCTACAGAGTGACATCCTTCTGGGCCATTAGCTaGGCTACCGCCCTGCCGATC | + |
|
Preference number: 4 (lower is better) Translates to: HGIHSKFRASIQGYRVTSFWAIS*ATALPI Trigger: GATCGGCAGGGCGGTAGCCCAGCTAATGGCCCAGAA...GGATGTCACTCTGTAGCCCTGGATGGATGCCCTGAATTTACTATGTATCCCATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
||
| 3UTR CAA 72 bp | CTGTGTCTTCATTTCTGTTCTCAAGCAAGCACTCTTTaGAAGACCAGTGCTGTCCAGGCTGAGGAAGCTCAG | + |
|
Preference number: 4 (lower is better) Translates to: LCLHFCSQASTL*KTSAVQAEEAQ Trigger: CTGAGCTTCCTCAGCCTGGACAGCACTGGTCTTCAAAAGAGTGCTTGCTTGAGAACAGAAATGAAGACACAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
||
| CDS-3UTR TCA 90 bp | CATGGGATACATAGTAAATTCAGGGCATCCATCCAGGGCTACAGAGTGACATCCCCACCACATTCACTCTaGTTTTCTTCCGTGCAACCT | + |
|
Preference number: 4 (lower is better) Translates to: HGIHSKFRASIQGYRVTSPPHSL*FSSVQP Trigger: AGGTTGCACGGAAGAAAATCAGAGTGAATGTGGTGG...GGATGTCACTCTGTAGCCCTGGATGGATGCCCTGAATTTACTATGTATCCCATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
||
| CDS-3UTR TCA 90 bp | TGTCTTCATTTCTGTTCTCAAGCAAGCACTCTTTTGAAGACCAGTGCTGTCCAGGAAGACTGTCTCTGTTaGTACCGGCTGCATTTACCA | + |
|
Preference number: 4 (lower is better) Translates to: CLHFCSQASTLLKTSAVQEDCLC*YRLHLP Trigger: TGGTAAATGCAGCCGGTATCAACAGAGACAGTCTTC...CTGGACAGCACTGGTCTTCAAAAGAGTGCTTGCTTGAGAACAGAAATGAAGACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
||
| CDS-3UTR GCA 90 bp | TGTCTTCATTTCTGTTCTCAAGCAAGCACTCTTTTGAAGACCAGTGCTGTCCAGAACATCACACCTAAATaGCAAGTGGTTTCCGCCGAG | + |
|
Preference number: 4 (lower is better) Translates to: CLHFCSQASTLLKTSAVQNITPK*QVVSAE Trigger: CTCGGCGGAAACCACTTGGCATTTAGGTGTGATGTT...CTGGACAGCACTGGTCTTCAAAAGAGTGCTTGCTTGAGAACAGAAATGAAGACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
||
| CDS-3UTR CCA 90 bp | AATTATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGTGTTTTTGAGATAGGACACCTAAATGCCAAGTaGTTTCCGCCGAGCTCGCCG | + |
|
Preference number: 4 (lower is better) Translates to: NYLCVCVCVCVCSVFEIGHLNAK*FPPSSP Trigger: CGGCGAGCTCGGCGGAAACCACTTGGCATTTAGGTG...TCCTATCTCAAAAACACTACACACACACACACACACACACACACACAAATAATT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
||
| CDS-3UTR GCA 90 bp | CCACTTCCTGTTTCCTCTCTCTGCTTCCAGTATGTCGATGAAATGCAGCCAGCATCTGTTGATACCGGCTaGATTTACCAAGAAATTTAC | + |
|
Preference number: 4 (lower is better) Translates to: PLPVSSLCFQYVDEMQPASVDTG*IYQEIY Trigger: GTAAATTTCTTGGTAAATGCAGCCGGTATCAACAGA...TGCTGGCTGCATTTCATCGACATACTGGAAGCAGAGAGAGGAAACAGGAAGTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
||
| CDS-3UTR CCA 90 bp | AAAGTTCAAGGCAAAAGGAATTCTATCTATATTTGCAGTCAGTTCTGTGTCTTCCGAGTCCTCCTTTGGTaGCACTGTATGCAGACTGGC | + |
|
Preference number: 4 (lower is better) Translates to: KVQGKRNSIYICSQFCVFRVLLW*HCMQTG Trigger: GCCAGTCTGCATACAGTGCCACCAAAGGAGGACTCG...GAAGACACAGAACTGACTGCAAATATAGATAGAATTCCTTTTGCCTTGAACTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
||
| CDS-3UTR CCA 90 bp | AATTATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGTGTTTTTGAGATAGGACAACGAGTCCTCCTTTaGTGGCACTGTATGCAGACT | + |
|
Preference number: 4 (lower is better) Translates to: NYLCVCVCVCVCSVFEIGQRVLL*WHCMQT Trigger: AGTCTGCATACAGTGCCACCAAAGGAGGACTCGTTG...TCCTATCTCAAAAACACTACACACACACACACACACACACACACACAAATAATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
||
| CDS-3UTR CCA 90 bp | GAACTGCTATATACAAAGTCAACTGCACCGCACTTAAATAACCAGGTTATTTTGGAATCATTGTCTTCATaGCAGCTTTACAGGTCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: ELLYTKSTAPHLNNQVILESLSS*QLYRSA Trigger: TGCTGACCTGTAAAGCTGCCATGAAGACAATGATTC...CAAAATAACCTGGTTATTTAAGTGCGGTGCAGTTGACTTTGTATATAGCAGTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
||
| 3UTR CAA 72 bp | GGTTATAGGCACTTGTTTGTTTGTTTGTTTGTTTGTTaGTTTGTTTTTCAAGAGAGGGTTTCTCTGTGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: GYRHLFVCLFVC*FVFQERVSLCS Trigger: GCTGCACAGAGAAACCCTCTCTTGAAAAACAAACAAACAAACAAACAAACAAACAAACAAGTGCCTATAACC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
||
| 3UTR CAA 72 bp | GGAGCTGAGGTTATAGGCACTTGTTTGTTTGTTTGTTaGTTTGTTTGTTTGTTTTTCAAGAGAGGGTTTCTC | + |
|
Preference number: 4 (lower is better) Translates to: GAEVIGTCLFVC*FVCLFFKRGFL Trigger: GAGAAACCCTCTCTTGAAAAACAAACAAACAAACAAACAAACAAACAAACAAGTGCCTATAACCTCAGCTCC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
||
| 3UTR CAA 72 bp | CACAAAAGTTCAAGGCAAAAGGAATTCTATCTATATTaGCAGTCAGTTCTGTGTCTTCATTTCTGTTCTCAA | + |
|
Preference number: 4 (lower is better) Translates to: HKSSRQKEFYLY*QSVLCLHFCSQ Trigger: TTGAGAACAGAAATGAAGACACAGAACTGACTGCAAATATAGATAGAATTCCTTTTGCCTTGAACTTTTGTG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
||
| CDS GCA 90 bp | TCGCCAGACGGTAACCCTTCTGGGCCATTAGCTGGGCTACCGCCCTaGCGATCCCCCGGGAGCCTCCAAAAACCGCACAGACTTTGTCCA | + |
|
Preference number: 5 (lower is better) Translates to: SPDGNPSGPLAGLPP*RSPGSLQKPHRLCP Trigger: TGGACAAAGTCTGTGCGGTTTTTGGAGGCTCCCGGGGGATCGGCAGGGCGGTAGCCCAGCTAATGGCCCAGAAGGGTTACCGTCTGGCGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000034058.14 ENSMUST00000126575.2 |
||
| CDS TCA 90 bp | GCAGCTTTACAGGTCAGCATGGAGCCCAGGAGGTTAGTGTGCAGCTaGGAGATCATGTCTTCAGTCTTTGTTCTTACTAGAAGACTGTCT | + |
|
Preference number: 5 (lower is better) Translates to: AALQVSMEPRRLVCS*EIMSSVFVLTRRLS Trigger: AGACAGTCTTCTAGTAAGAACAAAGACTGAAGACATGATCTCTCAGCTGCACACTAACCTCCTGGGCTCCATGCTGACCTGTAAAGCTGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
||
| CDS TCA 90 bp | CCTCCTTTCGCTCCTGTGGGAATCCACACACTCCGCACGTACTGTTaGTACCGGCTGCATTTACCAAGAAATTTACTGGACCTAAATGTT | + |
|
Preference number: 5 (lower is better) Translates to: PPFAPVGIHTLRTYC*YRLHLPRNLLDLNV Trigger: AACATTTAGGTCCAGTAAATTTCTTGGTAAATGCAGCCGGTATCAACAGTACGTGCGGAGTGTGTGGATTCCCACAGGAGCGAAAGGAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126575.2 |
||
| CDS CCA 90 bp | CGTGAAAACCCAACGAGTCCTCCTTTGGTGGCACTGTATGCAGACTaGCCAACGTTGCCTTTCAAACCAATAATACTTCCCACATTAACA | + |
|
Preference number: 5 (lower is better) Translates to: RENPTSPPLVALYAD*PTLPFKPIILPTLT Trigger: TGTTAATGTGGGAAGTATTATTGGTTTGAAAGGCAACGTTGGCCAGTCTGCATACAGTGCCACCAAAGGAGGACTCGTTGGGTTTTCACG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
||
| CDS-3UTR CAA 90 bp | GAACTGCTATATACAAAGTCAACTGCACCGCACTTAAATAACCAGGTTATTTTGTCGCCGGCGGTGACTTaGGCCACTTCCAGGTTTCTG | + |
|
Preference number: 5 (lower is better) Translates to: ELLYTKSTAPHLNNQVILSPAVT*ATSRFL Trigger: CAGAAACCTGGAAGTGGCCAAAGTCACCGCCGGCGA...CAAAATAACCTGGTTATTTAAGTGCGGTGCAGTTGACTTTGTATATAGCAGTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
||
| CDS-3UTR CAA 90 bp | AAGTCAACTGCACCGCACTTAAATAACCAGGTTATTTTGCTGAGCAGCTCAGAGAGAAGACTGTCTCTGTaGATACCGGCTGCATTTACC | + |
|
Preference number: 5 (lower is better) Translates to: KSTAPHLNNQVILLSSSERRLSL*IPAAFT Trigger: GGTAAATGCAGCCGGTATCAACAGAGACAGTCTTCT...CTCTGAGCTGCTCAGCAAAATAACCTGGTTATTTAAGTGCGGTGCAGTTGACTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
||
| CDS TCA 90 bp | TTCAAACCAATAATACTTCCCACATTAACAATAGACCCTCCCTGCTaGATCATTGTCTTCATGGCAGCTTTACAGGTCAGCATGGAGCCC | + |
|
Preference number: 5 (lower is better) Translates to: FKPIILPTLTIDPPC*IIVFMAALQVSMEP Trigger: GGGCTCCATGCTGACCTGTAAAGCTGCCATGAAGACAATGATTCAGCAGGGAGGGTCTATTGTTAATGTGGGAAGTATTATTGGTTTGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
||
| CDS-3UTR CAA 90 bp | AATTATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGTGTTTTTGAGATAGGACCAACGAGTCCTCCTTaGGTGGCACTGTATGCAGAC | + |
|
Preference number: 5 (lower is better) Translates to: NYLCVCVCVCVCSVFEIGPTSPP*VALYAD Trigger: GTCTGCATACAGTGCCACCAAAGGAGGACTCGTTGG...TCCTATCTCAAAAACACTACACACACACACACACACACACACACACAAATAATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
||
| CDS-3UTR CAA 90 bp | TGTCTTCATTTCTGTTCTCAAGCAAGCACTCTTTTGAAGACCAGTGCTGTCCAGTCATGTCTTCAGTCTTaGTTCTTACTAGAAGACTGT | + |
|
Preference number: 5 (lower is better) Translates to: CLHFCSQASTLLKTSAVQSCLQS*FLLEDC Trigger: ACAGTCTTCTAGTAAGAACAAAGACTGAAGACATGA...CTGGACAGCACTGGTCTTCAAAAGAGTGCTTGCTTGAGAACAGAAATGAAGACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
||
| CDS-3UTR CAA 90 bp | AAAGTTCAAGGCAAAAGGAATTCTATCTATATTTGCAGTCAGTTCTGTGTCTTCCTCCCTGCTGAATCATaGTCTTCATGGCAGCTTTAC | + |
|
Preference number: 5 (lower is better) Translates to: KVQGKRNSIYICSQFCVFLPAES*SSWQLY Trigger: GTAAAGCTGCCATGAAGACAATGATTCAGCAGGGAG...GAAGACACAGAACTGACTGCAAATATAGATAGAATTCCTTTTGCCTTGAACTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
||
| CDS GCA 72 bp | GGTAACCCTTCTGGGCCATTAGCTGGGCTACCGCCCTaGCGATCCCCCGGGAGCCTCCAAAAACCGCACAGA | + |
|
Preference number: 6 (lower is better) Translates to: GNPSGPLAGLPP*RSPGSLQKPHR Trigger: TCTGTGCGGTTTTTGGAGGCTCCCGGGGGATCGGCAGGGCGGTAGCCCAGCTAATGGCCCAGAAGGGTTACC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000034058.14 ENSMUST00000126575.2 |
||
| CDS CAA 72 bp | GCCAAGTGGTTTCCGCCGAGCTCGCCGGCGGTGACTTaGGCCACTTCCAGGTTTCTGGAGACGATCGCCAGA | + |
|
Preference number: 6 (lower is better) Translates to: AKWFPPSSPAVT*ATSRFLETIAR Trigger: TCTGGCGATCGTCTCCAGAAACCTGGAAGTGGCCAAAGTCACCGCCGGCGAGCTCGGCGGAAACCACTTGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034058.14 ENSMUST00000126575.2 |
||
| CDS CCA 72 bp | TCTTGTTCTTTGGCAACATCACACCTAAATGCCAAGTaGTTTCCGCCGAGCTCGCCGGCGGTGACTTTGGCC | + |
|
Preference number: 6 (lower is better) Translates to: SCSLATSHLNAK*FPPSSPAVTLA Trigger: GGCCAAAGTCACCGCCGGCGAGCTCGGCGGAAACCACTTGGCATTTAGGTGTGATGTTGCCAAAGAACAAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034058.14 ENSMUST00000126575.2 |
||
| CDS CAA 90 bp | GCAACCTCTTTAGCAAGCGAGCGTGAAAACCCAACGAGTCCTCCTTaGGTGGCACTGTATGCAGACTGGCCAACGTTGCCTTTCAAACCA | + |
|
Preference number: 6 (lower is better) Translates to: ATSLASERENPTSPP*VALYADWPTLPFKP Trigger: TGGTTTGAAAGGCAACGTTGGCCAGTCTGCATACAGTGCCACCAAAGGAGGACTCGTTGGGTTTTCACGCTCGCTTGCTAAAGAGGTTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
||
| CDS TCA 72 bp | GATTTTCTTCCGTGCAACCTCTTTAGCAAGCGAGCGTaGAAACCCAACGAGTCCTCCTTTGGTGGCACTGTA | + |
|
Preference number: 6 (lower is better) Translates to: DFLPCNLFSKRA*KPNESSFGGTV Trigger: TACAGTGCCACCAAAGGAGGACTCGTTGGGTTTTCACGCTCGCTTGCTAAAGAGGTTGCACGGAAGAAAATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
||
| CDS TCA 72 bp | GCTCCTGTGGGAATCCACACACTCCGCACGTACTGTTaGTACCGGCTGCATTTACCAAGAAATTTACTGGAC | + |
|
Preference number: 6 (lower is better) Translates to: APVGIHTLRTYC*YRLHLPRNLLD Trigger: GTCCAGTAAATTTCTTGGTAAATGCAGCCGGTATCAACAGTACGTGCGGAGTGTGTGGATTCCCACAGGAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126575.2 |
||
| CDS CAA 72 bp | CGCTCCTGTGGGAATCCACACACTCCGCACGTACTGTaGATACCGGCTGCATTTACCAAGAAATTTACTGGA | + |
|
Preference number: 6 (lower is better) Translates to: RSCGNPHTPHVL*IPAAFTKKFTG Trigger: TCCAGTAAATTTCTTGGTAAATGCAGCCGGTATCAACAGTACGTGCGGAGTGTGTGGATTCCCACAGGAGCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126575.2 |
||
| CDS CAA 90 bp | CCCTCCTTTCGCTCCTGTGGGAATCCACACACTCCGCACGTACTGTaGATACCGGCTGCATTTACCAAGAAATTTACTGGACCTAAATGT | + |
|
Preference number: 6 (lower is better) Translates to: PSFRSCGNPHTPHVL*IPAAFTKKFTGPKC Trigger: ACATTTAGGTCCAGTAAATTTCTTGGTAAATGCAGCCGGTATCAACAGTACGTGCGGAGTGTGTGGATTCCCACAGGAGCGAAAGGAGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126575.2 |
||
| CDS TCA 72 bp | CAGGTCAGCATGGAGCCCAGGAGGTTAGTGTGCAGCTaGGAGATCATGTCTTCAGTCTTTGTTCTTACTAGA | + |
|
Preference number: 6 (lower is better) Translates to: QVSMEPRRLVCS*EIMSSVFVLTR Trigger: TCTAGTAAGAACAAAGACTGAAGACATGATCTCTCAGCTGCACACTAACCTCCTGGGCTCCATGCTGACCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
||
| CDS CAA 90 bp | CCAACGAGTCCTCCTTTGGTGGCACTGTATGCAGACTGGCCAACGTaGCCTTTCAAACCAATAATACTTCCCACATTAACAATAGACCCT | + |
|
Preference number: 6 (lower is better) Translates to: PTSPPLVALYADWPT*PFKPIILPTLTIDP Trigger: AGGGTCTATTGTTAATGTGGGAAGTATTATTGGTTTGAAAGGCAACGTTGGCCAGTCTGCATACAGTGCCACCAAAGGAGGACTCGTTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
||
| CDS GCA 72 bp | CAAGTGTCTTGTCATATCCGTGCGAATAAATCCTGGTaGCACCACATTCACTCTGATTTTCTTCCGTGCAAC | + |
|
Preference number: 6 (lower is better) Translates to: QVSCHIRANKSW*HHIHSDFLPCN Trigger: GTTGCACGGAAGAAAATCAGAGTGAATGTGGTGGCACCAGGATTTATTCGCACGGATATGACAAGACACTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
||
| CDS CAA 72 bp | CCTCCTTTGGTGGCACTGTATGCAGACTGGCCAACGTaGCCTTTCAAACCAATAATACTTCCCACATTAACA | + |
|
Preference number: 6 (lower is better) Translates to: PPLVALYADWPT*PFKPIILPTLT Trigger: TGTTAATGTGGGAAGTATTATTGGTTTGAAAGGCAACGTTGGCCAGTCTGCATACAGTGCCACCAAAGGAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
||
| CDS CCA 72 bp | TTTCAAGTGTCTTGTCATATCCGTGCGAATAAATCCTaGTGCCACCACATTCACTCTGATTTTCTTCCGTGC | + |
|
Preference number: 6 (lower is better) Translates to: FQVSCHIRANKS*CHHIHSDFLPC Trigger: GCACGGAAGAAAATCAGAGTGAATGTGGTGGCACCAGGATTTATTCGCACGGATATGACAAGACACTTGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
||
| CDS TCA 72 bp | ATAATACTTCCCACATTAACAATAGACCCTCCCTGCTaGATCATTGTCTTCATGGCAGCTTTACAGGTCAGC | + |
|
Preference number: 6 (lower is better) Translates to: IILPTLTIDPPC*IIVFMAALQVS Trigger: GCTGACCTGTAAAGCTGCCATGAAGACAATGATTCAGCAGGGAGGGTCTATTGTTAATGTGGGAAGTATTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034058.14 |
||