RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CBR3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022947

Ensembl transcript IDs: ENSMUST00000039620.7, ENSMUST00000231302.2

Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 72 bp AGATCTTCCCTGCAGTTCTCAAGGGCTTTTAACCCCTaGAGACTGCTGATGTTCACCACTCTACCATGTGGT +
Preference number: 3 (lower is better)
Translates to: RSSLQFSRAFNP*RLLMFTTLPCG
Trigger: ACCACATGGTAGAGTGGTGAACATCAGCAGTCTGCAGGGGTTAAAAGCCCTTGAGAACTGCAGGGAAGATCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231302.2
CDS-3UTR TCA 90 bp TGGACACAGCGAATTGTTCAGACTGAGTTTGCAGAGCCGCAGATAGGAACGGACCCTCGTCCCGCGCCGTaGGCACCACGTCCCCGGAGA +
Preference number: 4 (lower is better)
Translates to: WTQRIVQTEFAEPQIGTDPRPAP*APRPRR
Trigger: TCTCCGGGGACGTGGTGCTCACGGCGCGGGACGAGG...GTCCGTTCCTATCTGCGGCTCTGCAAACTCAGTCTGAACAATTCGCTGTGTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039620.7
CDS-3UTR TCA 90 bp CCCTGCAGACTGCTGATGTTCACCACTCTACCATGTGGTTTCATTATAGGCAGTCCTCGTCCCGCGCCGTaGGCACCACGTCCCCGGAGA +
Preference number: 4 (lower is better)
Translates to: PCRLLMFTTLPCGFIIGSPRPAP*APRPRR
Trigger: TCTCCGGGGACGTGGTGCTCACGGCGCGGGACGAGG...ACTGCCTATAATGAAACCACATGGTAGAGTGGTGAACATCAGCAGTCTGCAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231302.2
CDS-3UTR GCA 90 bp AGGCTGCATTCATCTCTCCCGCTAACGTTTATCAAACAAGCCCCAGAGCAGACGCGCGCAGCGCACGGATaGTCTGCGGGTCGTCGATGT +
Preference number: 4 (lower is better)
Translates to: RLHSSLPLTFIKQAPEQTRAAHG*SAGRRC
Trigger: ACATCGACGACCCGCAGAGCATCCGTGCGCTGCGCG...CGTCTGCTCTGGGGCTTGTTTGATAAACGTTAGCGGGAGAGATGAATGCAGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039620.7
CDS-3UTR CCA 90 bp AGAGCCGCAGATAGGAACGGACCTTCCCCCTTGATGTGGGAAAGAATCAGACCAGGCCGTGAGGTTCAGTaGCATCTGGAGGCAGGAGAG +
Preference number: 4 (lower is better)
Translates to: RAADRNGPSPLMWERIRPGREVQ*HLEAGE
Trigger: CTCTCCTGCCTCCAGATGCCACTGAACCTCACGGCC...TGGTCTGATTCTTTCCCACATCAAGGGGGAAGGTCCGTTCCTATCTGCGGCTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039620.7
CDS-3UTR GCA 90 bp CCCTGCAGACTGCTGATGTTCACCACTCTACCATGTGGTTTCATTATAGGCAGTCGCGCAGCGCACGGATaGTCTGCGGGTCGTCGATGT +
Preference number: 4 (lower is better)
Translates to: PCRLLMFTTLPCGFIIGSRAAHG*SAGRRC
Trigger: ACATCGACGACCCGCAGAGCATCCGTGCGCTGCGCG...ACTGCCTATAATGAAACCACATGGTAGAGTGGTGAACATCAGCAGTCTGCAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231302.2
CDS-3UTR CCA 90 bp AGAGCCGCAGATAGGAACGGACCTTCCCCCTTGATGTGGGAAAGAATCAGACCACCCGTAAGCCGAGTCTaGCCAACCTTCCCTCTCATG +
Preference number: 4 (lower is better)
Translates to: RAADRNGPSPLMWERIRPPVSRV*PTFPLM
Trigger: CATGAGAGGGAAGGTTGGCCAGACTCGGCTTACGGG...TGGTCTGATTCTTTCCCACATCAAGGGGGAAGGTCCGTTCCTATCTGCGGCTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039620.7
CDS-3UTR TCA 90 bp ATCAGACCACACCAGGCTGCATTCATCTCTCCCGCTAACGTTTATCAAACAAGCCGGACTAGCTGGCCGTaGGGTTCAGTGGCATCTGGA +
Preference number: 4 (lower is better)
Translates to: IRPHQAAFISPANVYQTSRTSWP*GSVASG
Trigger: TCCAGATGCCACTGAACCTCACGGCCAGCTAGTCCG...GCTTGTTTGATAAACGTTAGCGGGAGAGATGAATGCAGCCTGGTGTGGTCTGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039620.7
CDS-3UTR GCA 90 bp TGGACACAGCGAATTGTTCAGACTGAGTTTGCAGAGCCGCAGATAGGAACGGACCTCTTTTCATCCAGCTaGCGGGCCAGGATCCTCGTA +
Preference number: 4 (lower is better)
Translates to: WTQRIVQTEFAEPQIGTDLFSSS*RARILV
Trigger: TACGAGGATCCTGGCCCGGCAGCTGGATGAAAAGAG...GTCCGTTCCTATCTGCGGCTCTGCAAACTCAGTCTGAACAATTCGCTGTGTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039620.7
CDS-3UTR TCA 90 bp CACACCAGGCTGCATTCATCTCTCCCGCTAACGTTTATCAAACAAGCCCCAGAGACCCCTGCAGACTGCTaGTGTTCACCACTCTACCAT +
Preference number: 4 (lower is better)
Translates to: HTRLHSSLPLTFIKQAPETPADC*CSPLYH
Trigger: ATGGTAGAGTGGTGAACATCAGCAGTCTGCAGGGGT...CTCTGGGGCTTGTTTGATAAACGTTAGCGGGAGAGATGAATGCAGCCTGGTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039620.7
CDS-3UTR TCA 90 bp TGGACACAGCGAATTGTTCAGACTGAGTTTGCAGAGCCGCAGATAGGAACGGACCATCGGAACTTTTCCTaGAGATCTTCCCTGCAGTTC +
Preference number: 4 (lower is better)
Translates to: WTQRIVQTEFAEPQIGTDHRNFS*RSSLQF
Trigger: GAACTGCAGGGAAGATCTTCAGGAAAAGTTCCGATG...GTCCGTTCCTATCTGCGGCTCTGCAAACTCAGTCTGAACAATTCGCTGTGTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039620.7
CDS-3UTR TCA 90 bp AGAATCAGACCACACCAGGCTGCATTCATCTCTCCCGCTAACGTTTATCAAACACCACAAACTTTTTCATaGGGTCGACCAGGTCCACCT +
Preference number: 4 (lower is better)
Translates to: RIRPHQAAFISPANVYQTPQTFS*GRPGPP
Trigger: AGGTGGACCTGGTCGACCTCATGAAAAAGTTTGTGG...TGTTTGATAAACGTTAGCGGGAGAGATGAATGCAGCCTGGTGTGGTCTGATTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039620.7
CDS-3UTR TCA 90 bp TGTGTCACATCGGAACTTTTCCTGAAGATCTTCCCTGCAGTTCTCAAGGGCTTTAAGAACACTCAGTTTTaGTCTTCCTGTCTCAAGCTT +
Preference number: 4 (lower is better)
Translates to: CVTSELFLKIFPAVLKGFKNTQF*SSCLKL
Trigger: AAGCTTGAGACAGGAAGATCAAAACTGAGTGTTCTT...AAAGCCCTTGAGAACTGCAGGGAAGATCTTCAGGAAAAGTTCCGATGTGACACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231302.2
CDS GCA 90 bp CAGGCATTGAGCAGAATCCTGTCCGCTTTCCTCTTTTCATCCAGCTaGCGGGCCAGGATCCTCGTAAGGACTGTCACCCCCAGCTTCGAC +
Preference number: 5 (lower is better)
Translates to: QALSRILSAFLFSSS*RARILVRTVTPSFD
Trigger: GTCGAAGCTGGGGGTGACAGTCCTTACGAGGATCCTGGCCCGGCAGCTGGATGAAAAGAGGAAAGCGGACAGGATTCTGCTCAATGCCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039620.7
CDS CCA 90 bp AAGTTTGCACAACTTTGTCACGGACTAGCTGGCCGTGAGGTTCAGTaGCATCTGGAGGCAGGAGAGCCAAGTAAACGGGGGTTTCGGCCC +
Preference number: 5 (lower is better)
Translates to: KFAQLCHGLAGREVQ*HLEAGEPSKRGFRP
Trigger: GGGCCGAAACCCCCGTTTACTTGGCTCTCCTGCCTCCAGATGCCACTGAACCTCACGGCCAGCTAGTCCGTGACAAAGTTGTGCAAACTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039620.7
CDS-3UTR CAA 90 bp ACACAGCGAATTGTTCAGACTGAGTTTGCAGAGCCGCAGATAGGAACGGACCTTCCCGGGCAGCAGGCATaGAGCAGAATCCTGTCCGCT +
Preference number: 5 (lower is better)
Translates to: TQRIVQTEFAEPQIGTDLPGQQA*SRILSA
Trigger: AGCGGACAGGATTCTGCTCAATGCCTGCTGCCCGGG...AAGGTCCGTTCCTATCTGCGGCTCTGCAAACTCAGTCTGAACAATTCGCTGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039620.7
CDS-3UTR CAA 90 bp ACACAGCGAATTGTTCAGACTGAGTTTGCAGAGCCGCAGATAGGAACGGACCTTGCGATGCCCGCGTTGTaGACCAGCACGTTAAGTCCC +
Preference number: 5 (lower is better)
Translates to: TQRIVQTEFAEPQIGTDLAMPAL*TSTLSP
Trigger: GGGACTTAACGTGCTGGTCAACAACGCGGGCATCGC...AAGGTCCGTTCCTATCTGCGGCTCTGCAAACTCAGTCTGAACAATTCGCTGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039620.7
CDS-3UTR CAA 90 bp TCAGTGTCACCTCAGCTTGAATGTCGAAGGGTGTTGGGTCATCCACTCAAGTTTGCGATGCCCGCGTTGTaGACCAGCACGTTAAGTCCC +
Preference number: 5 (lower is better)
Translates to: SVSPQLECRRVLGHPLKFAMPAL*TSTLSP
Trigger: GGGACTTAACGTGCTGGTCAACAACGCGGGCATCGC...AAACTTGAGTGGATGACCCAACACCCTTCGACATTCAAGCTGAGGTGACACTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231302.2
CDS-3UTR CAA 90 bp GTGTGGACACAGCGAATTGTTCAGACTGAGTTTGCAGAGCCGCAGATAGGAACGCAAGTTTGCACAACTTaGTCACGGACTAGCTGGCCG +
Preference number: 5 (lower is better)
Translates to: VWTQRIVQTEFAEPQIGTQVCTT*SRTSWP
Trigger: CGGCCAGCTAGTCCGTGACAAAGTTGTGCAAACTTG...CGTTCCTATCTGCGGCTCTGCAAACTCAGTCTGAACAATTCGCTGTGTCCACAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039620.7
CDS-3UTR CAA 90 bp ATCAGACCACACCAGGCTGCATTCATCTCTCCCGCTAACGTTTATCAAACAAGCAAGGCGATGCCCGCGTaGTTGACCAGCACGTTAAGT +
Preference number: 5 (lower is better)
Translates to: IRPHQAAFISPANVYQTSKAMPA*LTSTLS
Trigger: ACTTAACGTGCTGGTCAACAACGCGGGCATCGCCTT...GCTTGTTTGATAAACGTTAGCGGGAGAGATGAATGCAGCCTGGTGTGGTCTGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039620.7
CDS-3UTR CAA 90 bp TTCACCACTCTACCATGTGGTTTCATTATAGGCAGTAACTCAGTGCAGACATTTAAGGCGATGCCCGCGTaGTTGACCAGCACGTTAAGT +
Preference number: 5 (lower is better)
Translates to: FTTLPCGFIIGSNSVQTFKAMPA*LTSTLS
Trigger: ACTTAACGTGCTGGTCAACAACGCGGGCATCGCCTT...AAATGTCTGCACTGAGTTACTGCCTATAATGAAACCACATGGTAGAGTGGTGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231302.2
CDS-3UTR CAA 90 bp CCCCTGCAGACTGCTGATGTTCACCACTCTACCATGTGGTTTCATTATAGGCAGCAAGAACACTCAGTTTaGATCTTCCTGTCTCAAGCT +
Preference number: 5 (lower is better)
Translates to: PLQTADVHHSTMWFHYRQQEHSV*IFLSQA
Trigger: AGCTTGAGACAGGAAGATCAAAACTGAGTGTTCTTG...CTGCCTATAATGAAACCACATGGTAGAGTGGTGAACATCAGCAGTCTGCAGGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231302.2
CDS GCA 72 bp AGCAGAATCCTGTCCGCTTTCCTCTTTTCATCCAGCTaGCGGGCCAGGATCCTCGTAAGGACTGTCACCCCC +
Preference number: 6 (lower is better)
Translates to: SRILSAFLFSSS*RARILVRTVTP
Trigger: GGGGGTGACAGTCCTTACGAGGATCCTGGCCCGGCAGCTGGATGAAAAGAGGAAAGCGGACAGGATTCTGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039620.7
CDS TCA 72 bp CAAGTTTGCACAACTTTGTCACGGACTAGCTGGCCGTaGGGTTCAGTGGCATCTGGAGGCAGGAGAGCCAAG +
Preference number: 6 (lower is better)
Translates to: QVCTTLSRTSWP*GSVASGGRRAK
Trigger: CTTGGCTCTCCTGCCTCCAGATGCCACTGAACCTCACGGCCAGCTAGTCCGTGACAAAGTTGTGCAAACTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039620.7
CDS CAA 90 bp TGTCGCGTCTCAAGAACACTCAGTTTTGATCTTCCTGTCTCAAGCTaGAATAGGGTTCTTCTAAAGGCGATGCCCGCGTTGTTGACCAGC +
Preference number: 6 (lower is better)
Translates to: CRVSRTLSFDLPVSS*NRVLLKAMPALLTS
Trigger: GCTGGTCAACAACGCGGGCATCGCCTTTAGAAGAACCCTATTCAAGCTTGAGACAGGAAGATCAAAACTGAGTGTTCTTGAGACGCGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231302.2