Pregenerated sensors for CBR2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025150Ensembl transcript IDs: ENSMUST00000026148.9, ENSMUST00000154565.2
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGTAACGCGGTGGCCCGTTTATTTAGGCAAATGAGCCCAACAAAGTaGACAAAGAGAACAAGGTCTGCGCCTGGAGTGGTTGTGGGATCG | + |
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Preference number: 1 (lower is better) Translates to: GNAVARLFRQMSPTK*TKRTRSAPGVVVGS Trigger: CGATCCCACAACCACTCCAGGCGCAGACCTTGTTCTCTTTGTCCACTTTGTTGGGCTCATTTGCCTAAATAAACGGGCCACCGCGTTACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026148.9 |
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| 3UTR CCA 72 bp | CCTGGAGTGGTTGTGGGATCGACAGTAACATGGGGGTaGAACTGTGAGCTGCGTGGTGGGCGTGGCTGTAGC | + |
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Preference number: 3 (lower is better) Translates to: PGVVVGSTVTWG*NCELRGGRGCS Trigger: GCTACAGCCACGCCCACCACGCAGCTCACAGTTCCACCCCCATGTTACTGTCGATCCCACAACCACTCCAGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026148.9 |
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| 3UTR TCA 72 bp | GGAACTGTGAGCTGCGTGGTGGGCGTGGCTGTAGCATaGGGGCGGAGTCACGAGATCAGTAAATGCTTTGGC | + |
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Preference number: 3 (lower is better) Translates to: GTVSCVVGVAVA*GRSHEISKCFG Trigger: GCCAAAGCATTTACTGATCTCGTGACTCCGCCCTCATGCTACAGCCACGCCCACCACGCAGCTCACAGTTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026148.9 |
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| 3UTR-3UTR CAA 90 bp | TCGACAGTAACATGGGGGTGGAACTGTGAGCTGCGTGGTGGGCGTGGCTGTAGCAGATCAGTAAATGCTTaGGCTGAGGGTGGGGCTAAG | + |
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Preference number: 3 (lower is better) Translates to: STVTWGWNCELRGGRGCSRSVNA*AEGGAK Trigger: CTTAGCCCCACCCTCAGCCAAAGCATTTACTGATCT...GCTACAGCCACGCCCACCACGCAGCTCACAGTTCCACCCCCATGTTACTGTCGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026148.9 |
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| 3UTR CCA 72 bp | CCCAACAAAGTGGACAAAGAGAACAAGGTCTGCGCCTaGAGTGGTTGTGGGATCGACAGTAACATGGGGGTG | + |
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Preference number: 3 (lower is better) Translates to: PNKVDKENKVCA*SGCGIDSNMGV Trigger: CACCCCCATGTTACTGTCGATCCCACAACCACTCCAGGCGCAGACCTTGTTCTCTTTGTCCACTTTGTTGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026148.9 |
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| 3UTR GCA 72 bp | AATGAGCCCAACAAAGTGGACAAAGAGAACAAGGTCTaGGCCTGGAGTGGTTGTGGGATCGACAGTAACATG | + |
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Preference number: 3 (lower is better) Translates to: NEPNKVDKENKV*AWSGCGIDSNM Trigger: CATGTTACTGTCGATCCCACAACCACTCCAGGCGCAGACCTTGTTCTCTTTGTCCACTTTGTTGGGCTCATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026148.9 |
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| 3UTR CCA 72 bp | GTGGCCCGTTTATTTAGGCAAATGAGCCCAACAAAGTaGACAAAGAGAACAAGGTCTGCGCCTGGAGTGGTT | + |
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Preference number: 3 (lower is better) Translates to: VARLFRQMSPTK*TKRTRSAPGVV Trigger: AACCACTCCAGGCGCAGACCTTGTTCTCTTTGTCCACTTTGTTGGGCTCATTTGCCTAAATAAACGGGCCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026148.9 |
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| 3UTR TCA 72 bp | TTAAAGGTAACGCGGTGGCCCGTTTATTTAGGCAAATaGGCCCAACAAAGTGGACAAAGAGAACAAGGTCTG | + |
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Preference number: 3 (lower is better) Translates to: LKVTRWPVYLGK*AQQSGQREQGL Trigger: CAGACCTTGTTCTCTTTGTCCACTTTGTTGGGCTCATTTGCCTAAATAAACGGGCCACCGCGTTACCTTTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026148.9 |
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| CDS-3UTR TCA 90 bp | TCGACAGTAACATGGGGGTGGAACTGTGAGCTGCGTGGTGGGCGTGGCTGTAGCCCATGCTGGAGACATTaGCAATGGACCCTGGCACGC | + |
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Preference number: 4 (lower is better) Translates to: STVTWGWNCELRGGRGCSPCWRH*QWTLAR Trigger: GCGTGCCAGGGTCCATTGTCAATGTCTCCAGCATGG...GCTACAGCCACGCCCACCACGCAGCTCACAGTTCCACCCCCATGTTACTGTCGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026148.9 |
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| CDS-3UTR CCA 90 bp | TCGACAGTAACATGGGGGTGGAACTGTGAGCTGCGTGGTGGGCGTGGCTGTAGCGTGGCCCTAGTTCCATaGCCATGGCTTTGGTCAGCA | + |
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Preference number: 4 (lower is better) Translates to: STVTWGWNCELRGGRGCSVALVP*PWLWSA Trigger: TGCTGACCAAAGCCATGGCCATGGAACTAGGGCCAC...GCTACAGCCACGCCCACCACGCAGCTCACAGTTCCACCCCCATGTTACTGTCGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026148.9 |
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| CDS-3UTR CCA 90 bp | CCTGGAGTGGTTGTGGGATCGACAGTAACATGGGGGTGGAACTGTGAGCTGCGTTGCGAACTTCCTCAGTaGGTGGCGCTCCTTGAGCTT | + |
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Preference number: 4 (lower is better) Translates to: PGVVVGSTVTWGWNCELRCELPQ*VALLEL Trigger: AAGCTCAAGGAGCGCCACCCACTGAGGAAGTTCGCA...ACGCAGCTCACAGTTCCACCCCCATGTTACTGTCGATCCCACAACCACTCCAGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026148.9 |
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| CDS-3UTR TCA 90 bp | AATGAGCCCAACAAAGTGGACAAAGAGAACAAGGTCTGCGCCTGGAGTGGTTGTCACCACTTTGGCTCCTaGGGCGTGCAGGGCCTTCAC | + |
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Preference number: 4 (lower is better) Translates to: NEPNKVDKENKVCAWSGCHHFGS*GVQGLH Trigger: GTGAAGGCCCTGCACGCCTCAGGAGCCAAAGTGGTG...ACAACCACTCCAGGCGCAGACCTTGTTCTCTTTGTCCACTTTGTTGGGCTCATT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026148.9 |
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| CDS-3UTR TCA 90 bp | GGAGTGGTTGTGGGATCGACAGTAACATGGGGGTGGAACTGTGAGCTGCGTGGTGGAAGAGGATGCTGTTaGCGACGTCTTCAACCTCTG | + |
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Preference number: 4 (lower is better) Translates to: GVVVGSTVTWGWNCELRGGRGCC*RRLQPL Trigger: CAGAGGTTGAAGACGTCGTCAACAGCATCCTCTTCC...ACCACGCAGCTCACAGTTCCACCCCCATGTTACTGTCGATCCCACAACCACTCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026148.9 |
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| CDS-3UTR GCA 90 bp | AATGAGCCCAACAAAGTGGACAAAGAGAACAAGGTCTGCGCCTGGAGTGGTTGTTCCAATCCCTTTCCCTaGCCCTGTCACCAGGGCCCT | + |
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Preference number: 4 (lower is better) Translates to: NEPNKVDKENKVCAWSGCSNPFP*PCHQGP Trigger: AGGGCCCTGGTGACAGGGGCAGGGAAAGGGATTGGA...ACAACCACTCCAGGCGCAGACCTTGTTCTCTTTGTCCACTTTGTTGGGCTCATT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026148.9 |
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| CDS-3UTR GCA 90 bp | GGAGTGGTTGTGGGATCGACAGTAACATGGGGGTGGAACTGTGAGCTGCGTGGTCTGCAGAGACTTTCTTaGCCATGTCAGTCAGCACCA | + |
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Preference number: 4 (lower is better) Translates to: GVVVGSTVTWGWNCELRGLQRLS*PCQSAP Trigger: TGGTGCTGACTGACATGGGCAAGAAAGTCTCTGCAG...ACCACGCAGCTCACAGTTCCACCCCCATGTTACTGTCGATCCCACAACCACTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026148.9 |
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| CDS-3UTR CCA 90 bp | AACGCGGTGGCCCGTTTATTTAGGCAAATGAGCCCAACAAAGTGGACAAAGAGACCAGCGCCTTCTCTGTaGCATCCCAGTCACCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: NAVARLFRQMSPTKWTKRPAPSL*HPSHPG Trigger: ACCTGGGTGACTGGGATGCCACAGAGAAGGCGCTGG...TCTCTTTGTCCACTTTGTTGGGCTCATTTGCCTAAATAAACGGGCCACCGCGTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026148.9 |
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| CDS-3UTR CAA 90 bp | GGAGTGGTTGTGGGATCGACAGTAACATGGGGGTGGAACTGTGAGCTGCGTGGTCTGTCAAAGGCTTCCTaGGTAACTTCCAGGAAGGGC | + |
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Preference number: 5 (lower is better) Translates to: GVVVGSTVTWGWNCELRGLSKAS*VTSRKG Trigger: GCCCTTCCTGGAAGTTACCAAGGAAGCCTTTGACAG...ACCACGCAGCTCACAGTTCCACCCCCATGTTACTGTCGATCCCACAACCACTCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026148.9 |
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| CDS CCA 90 bp | AAAGGTGACATGGGCCACCATGCTGGAGACATTGACAATGGACCCTaGCACGCCACGGTTAATCATGTCCCTGGCTACCATCTGGGATAC | + |
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Preference number: 5 (lower is better) Translates to: KGDMGHHAGDIDNGP*HATVNHVPGYHLGY Trigger: GTATCCCAGATGGTAGCCAGGGACATGATTAACCGTGGCGTGCCAGGGTCCATTGTCAATGTCTCCAGCATGGTGGCCCATGTCACCTTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026148.9 ENSMUST00000154565.2 |
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| CDS-3UTR CAA 90 bp | CAAAGTGGACAAAGAGAACAAGGTCTGCGCCTGGAGTGGTTGTGGGATCGACAGACCATGCTGGAGACATaGACAATGGACCCTGGCACG | + |
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Preference number: 5 (lower is better) Translates to: QSGQREQGLRLEWLWDRQTMLET*TMDPGT Trigger: CGTGCCAGGGTCCATTGTCAATGTCTCCAGCATGGT...CTGTCGATCCCACAACCACTCCAGGCGCAGACCTTGTTCTCTTTGTCCACTTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026148.9 |
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| CDS-3UTR CAA 90 bp | GGTAACGCGGTGGCCCGTTTATTTAGGCAAATGAGCCCAACAAAGTGGACAAAGAGTGGGTGGCGCTCCTaGAGCTTCCTGGCAAACTCA | + |
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Preference number: 5 (lower is better) Translates to: GNAVARLFRQMSPTKWTKSGWRS*SFLANS Trigger: TGAGTTTGCCAGGAAGCTCAAGGAGCGCCACCCACT...CTTTGTCCACTTTGTTGGGCTCATTTGCCTAAATAAACGGGCCACCGCGTTACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026148.9 |
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| CDS GCA 90 bp | CTGAAGGACCTGTCAAAGGCTTCCTTGGTAACTTCCAGGAAGGGCTaGATTATAACCAGCGCTGCATTGTTCACCAGTAAGTCCACAGGG | + |
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Preference number: 5 (lower is better) Translates to: LKDLSKASLVTSRKG*IITSAALFTSKSTG Trigger: CCCTGTGGACTTACTGGTGAACAATGCAGCGCTGGTTATAATGCAGCCCTTCCTGGAAGTTACCAAGGAAGCCTTTGACAGGTCCTTCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026148.9 |
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| CDS-3UTR CAA 90 bp | AAAGTGGACAAAGAGAACAAGGTCTGCGCCTGGAGTGGTTGTGGGATCGACAGTAGGAAGAGGATGCTGTaGACGACGTCTTCAACCTCT | + |
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Preference number: 5 (lower is better) Translates to: KVDKENKVCAWSGCGIDSRKRML*TTSSTS Trigger: AGAGGTTGAAGACGTCGTCAACAGCATCCTCTTCCT...ACTGTCGATCCCACAACCACTCCAGGCGCAGACCTTGTTCTCTTTGTCCACTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026148.9 |
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| CDS CAA 90 bp | CAGTCACCCAGGTCCACACACACGGGCTCTATTCCGGGACACTCTTaGGCAAGGCTGACCAGGTCTGAGTTGGTCCGAGTCACCGCCACC | + |
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Preference number: 6 (lower is better) Translates to: QSPRSTHTGSIPGHS*ARLTRSELVRVTAT Trigger: GGTGGCGGTGACTCGGACCAACTCAGACCTGGTCAGCCTTGCCAAAGAGTGTCCCGGAATAGAGCCCGTGTGTGTGGACCTGGGTGACTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026148.9 |
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| CDS TCA 72 bp | CCCTGGCTACCATCTGGGATACCTCTTTGGCAAGGCTaGCCAGGTCTGAGTTGGTCCGAGTCACCGCCACCA | + |
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Preference number: 6 (lower is better) Translates to: PWLPSGIPLWQG*PGLSWSESPPP Trigger: TGGTGGCGGTGACTCGGACCAACTCAGACCTGGTCAGCCTTGCCAAAGAGGTATCCCAGATGGTAGCCAGGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154565.2 |
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| CDS CAA 90 bp | CCACTGGTAGAGGCACTTCTGTCGCTGAGCAGGAAGAGGATGCTGTaGACGACGTCTTCAACCTCTGCGAACTTCCTCAGTGGGTGGCGC | + |
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Preference number: 6 (lower is better) Translates to: PLVEALLSLSRKRML*TTSSTSANFLSGWR Trigger: GCGCCACCCACTGAGGAAGTTCGCAGAGGTTGAAGACGTCGTCAACAGCATCCTCTTCCTGCTCAGCGACAGAAGTGCCTCTACCAGTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026148.9 |
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| CDS CAA 72 bp | AGGTCCACACACACGGGCTCTATTCCGGGACACTCTTaGGCAAGGCTGACCAGGTCTGAGTTGGTCCGAGTC | + |
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Preference number: 6 (lower is better) Translates to: RSTHTGSIPGHS*ARLTRSELVRV Trigger: GACTCGGACCAACTCAGACCTGGTCAGCCTTGCCAAAGAGTGTCCCGGAATAGAGCCCGTGTGTGTGGACCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026148.9 |
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| CDS TCA 72 bp | CAACCTCTGCGAACTTCCTCAGTGGGTGGCGCTCCTTaGGCTTCCTGGCAAACTCAGGGTCTGCAGAGACTT | + |
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Preference number: 6 (lower is better) Translates to: QPLRTSSVGGAP*ASWQTQGLQRL Trigger: AAGTCTCTGCAGACCCTGAGTTTGCCAGGAAGCTCAAGGAGCGCCACCCACTGAGGAAGTTCGCAGAGGTTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026148.9 ENSMUST00000154565.2 |
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| CDS GCA 72 bp | GTGGCGCTCCTTGAGCTTCCTGGCAAACTCAGGGTCTaGAGAGACTTTCTTGCCCATGTCAGTCAGCACCAC | + |
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Preference number: 6 (lower is better) Translates to: VALLELPGKLRV*RDFLAHVSQHH Trigger: GTGGTGCTGACTGACATGGGCAAGAAAGTCTCTGCAGACCCTGAGTTTGCCAGGAAGCTCAAGGAGCGCCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026148.9 ENSMUST00000154565.2 |
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| CDS CAA 72 bp | CGGATCTTGTGTGGCCCTAGTTCCATGGCCATGGCTTaGGTCAGCATAGTCATCGCTCCCTTGGTGGAGCTG | + |
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Preference number: 6 (lower is better) Translates to: RILCGPSSMAMA*VSIVIAPLVEL Trigger: CAGCTCCACCAAGGGAGCGATGACTATGCTGACCAAAGCCATGGCCATGGAACTAGGGCCACACAAGATCCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026148.9 ENSMUST00000154565.2 |
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| CDS CAA 90 bp | TCCTTGGTAACTTCCAGGAAGGGCTGCATTATAACCAGCGCTGCATaGTTCACCAGTAAGTCCACAGGGCCGATACCGCCCAGCGCCTTC | + |
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Preference number: 6 (lower is better) Translates to: SLVTSRKGCIITSAA*FTSKSTGPIPPSAF Trigger: GAAGGCGCTGGGCGGTATCGGCCCTGTGGACTTACTGGTGAACAATGCAGCGCTGGTTATAATGCAGCCCTTCCTGGAAGTTACCAAGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026148.9 |
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| CDS CCA 72 bp | ATGGGCCACCATGCTGGAGACATTGACAATGGACCCTaGCACGCCACGGTTAATCATGTCCCTGGCTACCAT | + |
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Preference number: 6 (lower is better) Translates to: MGHHAGDIDNGP*HATVNHVPGYH Trigger: ATGGTAGCCAGGGACATGATTAACCGTGGCGTGCCAGGGTCCATTGTCAATGTCTCCAGCATGGTGGCCCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026148.9 ENSMUST00000154565.2 |
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| CDS CAA 72 bp | ACTTCCAGGAAGGGCTGCATTATAACCAGCGCTGCATaGTTCACCAGTAAGTCCACAGGGCCGATACCGCCC | + |
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Preference number: 6 (lower is better) Translates to: TSRKGCIITSAA*FTSKSTGPIPP Trigger: GGGCGGTATCGGCCCTGTGGACTTACTGGTGAACAATGCAGCGCTGGTTATAATGCAGCCCTTCCTGGAAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026148.9 |
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| CDS CAA 90 bp | CGCTCCTTGAGCTTCCTGGCAAACTCAGGGTCTGCAGAGACTTTCTaGCCCATGTCAGTCAGCACCACAGTGGGGTTTACGGAGTTTACC | + |
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Preference number: 6 (lower is better) Translates to: RSLSFLANSGSAETF*PMSVSTTVGFTEFT Trigger: GGTAAACTCCGTAAACCCCACTGTGGTGCTGACTGACATGGGCAAGAAAGTCTCTGCAGACCCTGAGTTTGCCAGGAAGCTCAAGGAGCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026148.9 ENSMUST00000154565.2 |
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| CDS CCA 72 bp | CAGAGACTTTCTTGCCCATGTCAGTCAGCACCACAGTaGGGTTTACGGAGTTTACCCGGATCTTGTGTGGCC | + |
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Preference number: 6 (lower is better) Translates to: QRLSCPCQSAPQ*GLRSLPGSCVA Trigger: GGCCACACAAGATCCGGGTAAACTCCGTAAACCCCACTGTGGTGCTGACTGACATGGGCAAGAAAGTCTCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026148.9 ENSMUST00000154565.2 |
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| CDS CAA 72 bp | AGCTTCCTGGCAAACTCAGGGTCTGCAGAGACTTTCTaGCCCATGTCAGTCAGCACCACAGTGGGGTTTACG | + |
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Preference number: 6 (lower is better) Translates to: SFLANSGSAETF*PMSVSTTVGFT Trigger: CGTAAACCCCACTGTGGTGCTGACTGACATGGGCAAGAAAGTCTCTGCAGACCCTGAGTTTGCCAGGAAGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026148.9 ENSMUST00000154565.2 |
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| CDS CAA 90 bp | GTGATCAAGTTAGGAAAGGTGACATGGGCCACCATGCTGGAGACATaGACAATGGACCCTGGCACGCCACGGTTAATCATGTCCCTGGCT | + |
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Preference number: 6 (lower is better) Translates to: VIKLGKVTWATMLET*TMDPGTPRLIMSLA Trigger: AGCCAGGGACATGATTAACCGTGGCGTGCCAGGGTCCATTGTCAATGTCTCCAGCATGGTGGCCCATGTCACCTTTCCTAACTTGATCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026148.9 ENSMUST00000154565.2 |
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| CDS CAA 90 bp | ATGTCAGTCAGCACCACAGTGGGGTTTACGGAGTTTACCCGGATCTaGTGTGGCCCTAGTTCCATGGCCATGGCTTTGGTCAGCATAGTC | + |
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Preference number: 6 (lower is better) Translates to: MSVSTTVGFTEFTRI*CGPSSMAMALVSIV Trigger: GACTATGCTGACCAAAGCCATGGCCATGGAACTAGGGCCACACAAGATCCGGGTAAACTCCGTAAACCCCACTGTGGTGCTGACTGACAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026148.9 ENSMUST00000154565.2 |
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| CDS CAA 72 bp | TTAGGAAAGGTGACATGGGCCACCATGCTGGAGACATaGACAATGGACCCTGGCACGCCACGGTTAATCATG | + |
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Preference number: 6 (lower is better) Translates to: LGKVTWATMLET*TMDPGTPRLIM Trigger: CATGATTAACCGTGGCGTGCCAGGGTCCATTGTCAATGTCTCCAGCATGGTGGCCCATGTCACCTTTCCTAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026148.9 ENSMUST00000154565.2 |
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| CDS CAA 72 bp | TTAATCATGTCCCTGGCTACCATCTGGGATACCTCTTaGGCAAGGCTGACCAGGTCTGAGTTGGTCCGAGTC | + |
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Preference number: 6 (lower is better) Translates to: LIMSLATIWDTS*ARLTRSELVRV Trigger: GACTCGGACCAACTCAGACCTGGTCAGCCTTGCCAAAGAGGTATCCCAGATGGTAGCCAGGGACATGATTAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154565.2 |
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| CDS TCA 72 bp | CGGTTAATCATGTCCCTGGCTACCATCTGGGATACCTaGAACACAGAGCGAAGATTTACACTGAAGGACCTG | + |
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Preference number: 6 (lower is better) Translates to: RLIMSLATIWDT*NTERRFTLKDL Trigger: CAGGTCCTTCAGTGTAAATCTTCGCTCTGTGTTTCAGGTATCCCAGATGGTAGCCAGGGACATGATTAACCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026148.9 |
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| CDS GCA 72 bp | CTGTCAAAGGCTTCCTTGGTAACTTCCAGGAAGGGCTaGATTATAACCAGCGCTGCATTGTTCACCAGTAAG | + |
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Preference number: 6 (lower is better) Translates to: LSKASLVTSRKG*IITSAALFTSK Trigger: CTTACTGGTGAACAATGCAGCGCTGGTTATAATGCAGCCCTTCCTGGAAGTTACCAAGGAAGCCTTTGACAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026148.9 |
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| CDS CAA 90 bp | AACACAGAGCGAAGATTTACACTGAAGGACCTGTCAAAGGCTTCCTaGGTAACTTCCAGGAAGGGCTGCATTATAACCAGCGCTGCATTG | + |
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Preference number: 6 (lower is better) Translates to: NTERRFTLKDLSKAS*VTSRKGCIITSAAL Trigger: CAATGCAGCGCTGGTTATAATGCAGCCCTTCCTGGAAGTTACCAAGGAAGCCTTTGACAGGTCCTTCAGTGTAAATCTTCGCTCTGTGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026148.9 |
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