Pregenerated sensors for CBR1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000051483Ensembl transcript IDs: ENSMUST00000039659.9, ENSMUST00000231762.2
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGCCCCACCAGCTCCTCCTCTGTGATGGTCTCGCTTCGAAACTTCTaGTGCAGCTCCAGCCTGCAGTTTTTCAGGGCCCTGAGACTCACC | + |
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Preference number: 1 (lower is better) Translates to: SPTSSSSVMVSLRNF*CSSSLQFFRALRLT Trigger: GGTGAGTCTCAGGGCCCTGAAAAACTGCAGGCTGGAGCTGCAGCAGAAGTTTCGAAGCGAGACCATCACAGAGGAGGAGCTGGTGGGGCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000231762.2 |
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| 3UTR GCA 90 bp | CCCACCAGCTCCTCCTCTGTGATGGTCTCGCTTCGAAACTTCTGCTaGAGCTCCAGCCTGCAGTTTTTCAGGGCCCTGAGACTCACCATG | + |
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Preference number: 1 (lower is better) Translates to: PTSSSSVMVSLRNFC*SSSLQFFRALRLTM Trigger: CATGGTGAGTCTCAGGGCCCTGAAAAACTGCAGGCTGGAGCTGCAGCAGAAGTTTCGAAGCGAGACCATCACAGAGGAGGAGCTGGTGGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000231762.2 |
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| 3UTR-3UTR CCA 90 bp | CAAGAGCACTGTATGGGTGTAGCACCCTTCCTGATATACACCAAAGACAATCATGGCCTTCATAAAGTCTaGATACAAGGGGGTGGGAGG | + |
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Preference number: 2 (lower is better) Translates to: QEHCMGVAPFLIYTKDNHGLHKV*IQGGGR Trigger: CCTCCCACCCCCTTGTATCCAGACTTTATGAAGGCC...ATGATTGTCTTTGGTGTATATCAGGAAGGGTGCTACACCCATACAGTGCTCTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039659.9 |
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| 3UTR GCA 72 bp | AGCTCCTCCTCTGTGATGGTCTCGCTTCGAAACTTCTaGTGCAGCTCCAGCCTGCAGTTTTTCAGGGCCCTG | + |
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Preference number: 3 (lower is better) Translates to: SSSSVMVSLRNF*CSSSLQFFRAL Trigger: CAGGGCCCTGAAAAACTGCAGGCTGGAGCTGCAGCAGAAGTTTCGAAGCGAGACCATCACAGAGGAGGAGCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000231762.2 |
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| 3UTR GCA 72 bp | TCCTCCTCTGTGATGGTCTCGCTTCGAAACTTCTGCTaGAGCTCCAGCCTGCAGTTTTTCAGGGCCCTGAGA | + |
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Preference number: 3 (lower is better) Translates to: SSSVMVSLRNFC*SSSLQFFRALR Trigger: TCTCAGGGCCCTGAAAAACTGCAGGCTGGAGCTGCAGCAGAAGTTTCGAAGCGAGACCATCACAGAGGAGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000231762.2 |
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| CDS-3UTR TCA 90 bp | CTGCTGCAGCTCCAGCCTGCAGTTTTTCAGGGCCCTGAGACTCACCATGCTGGACGATGCCTGCGTTGTTaGCCAGCACGTCCAGGCCTC | + |
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Preference number: 4 (lower is better) Translates to: LLQLQPAVFQGPETHHAGRCLRC*PARPGL Trigger: GAGGCCTGGACGTGCTGGTCAACAACGCAGGCATCG...TCCAGCATGGTGAGTCTCAGGGCCCTGAAAAACTGCAGGCTGGAGCTGCAGCAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000231762.2 |
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| CDS-3UTR TCA 90 bp | CCCCACCAGCTCCTCCTCTGTGATGGTCTCGCTTCGAAACTTCTGCTGCAGCTCATTGTCACCTCTGCTTaGATGTGGAAGGGGGTGTCG | + |
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Preference number: 4 (lower is better) Translates to: PHQLLLCDGLASKLLLQLIVTSA*MWKGVS Trigger: CGACACCCCCTTCCACATTCAAGCAGAGGTGACAAT...GAGCTGCAGCAGAAGTTTCGAAGCGAGACCATCACAGAGGAGGAGCTGGTGGGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000231762.2 |
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| CDS-3UTR GCA 90 bp | TGCAGCTCCAGCCTGCAGTTTTTCAGGGCCCTGAGACTCACCATGCTGGACACAGAGGGAGCAGCTCCTTaGAGACATCTCGGGTACCAA | + |
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Preference number: 4 (lower is better) Translates to: CSSSLQFFRALRLTMLDTEGAAP*RHLGYQ Trigger: TTGGTACCCGAGATGTCTGCAAGGAGCTGCTCCCTC...TGTGTCCAGCATGGTGAGTCTCAGGGCCCTGAAAAACTGCAGGCTGGAGCTGCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000231762.2 |
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| CDS-3UTR TCA 90 bp | CAAGAGCACTGTATGGGTGTAGCACCCTTCCTGATATACACCAAAGACAATCATCTGCCATGTCGGTTCTaGCCCACCCAGGGCAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: QEHCMGVAPFLIYTKDNHLPCRF*PTQGSR Trigger: CCTGCTGCCCTGGGTGGGTCAGAACCGACATGGCAG...ATGATTGTCTTTGGTGTATATCAGGAAGGGTGCTACACCCATACAGTGCTCTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039659.9 |
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| CDS-3UTR TCA 90 bp | AGAGCACTGTATGGGTGTAGCACCCTTCCTGATATACACCAAAGACAATCATATCGATGCCTGCGTTGTTaGCCAGCACGTCCAGGCCTC | + |
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Preference number: 4 (lower is better) Translates to: RALYGCSTLPDIHQRQSYRCLRC*PARPGL Trigger: GAGGCCTGGACGTGCTGGTCAACAACGCAGGCATCG...ATATGATTGTCTTTGGTGTATATCAGGAAGGGTGCTACACCCATACAGTGCTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039659.9 |
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| CDS-3UTR GCA 90 bp | CAAGAGCACTGTATGGGTGTAGCACCCTTCCTGATATACACCAAAGACAATCATCCCATGAGGCCCCTCTaGATCTGGAGGCAAAAGGGC | + |
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Preference number: 4 (lower is better) Translates to: QEHCMGVAPFLIYTKDNHPMRPL*IWRQKG Trigger: GCCCTTTTGCCTCCAGATGCAGAGGGGCCTCATGGG...ATGATTGTCTTTGGTGTATATCAGGAAGGGTGCTACACCCATACAGTGCTCTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039659.9 |
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| CDS-3UTR TCA 90 bp | CAAGAGCACTGTATGGGTGTAGCACCCTTCCTGATATACACCAAAGACAATCATCCAGCTCCTCCTCTGTaGTGGTCTCGCTTCGAAACT | + |
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Preference number: 4 (lower is better) Translates to: QEHCMGVAPFLIYTKDNHPAPPL*WSRFET Trigger: AGTTTCGAAGCGAGACCATCACAGAGGAGGAGCTGG...ATGATTGTCTTTGGTGTATATCAGGAAGGGTGCTACACCCATACAGTGCTCTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039659.9 |
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| CDS-3UTR CCA 90 bp | CAAGAGCACTGTATGGGTGTAGCACCCTTCCTGATATACACCAAAGACAATCATAGGCCCCTCTGCATCTaGAGGCAAAAGGGCCAAGTA | + |
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Preference number: 4 (lower is better) Translates to: QEHCMGVAPFLIYTKDNHRPLCI*RQKGQV Trigger: TACTTGGCCCTTTTGCCTCCAGATGCAGAGGGGCCT...ATGATTGTCTTTGGTGTATATCAGGAAGGGTGCTACACCCATACAGTGCTCTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039659.9 |
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| CDS-3UTR TCA 90 bp | CAAGAGCACTGTATGGGTGTAGCACCCTTCCTGATATACACCAAAGACAATCATATTGTCACCTCTGCTTaGATGTGGAAGGGGGTGTCG | + |
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Preference number: 4 (lower is better) Translates to: QEHCMGVAPFLIYTKDNHIVTSA*MWKGVS Trigger: CGACACCCCCTTCCACATTCAAGCAGAGGTGACAAT...ATGATTGTCTTTGGTGTATATCAGGAAGGGTGCTACACCCATACAGTGCTCTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039659.9 |
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| CDS-3UTR GCA 90 bp | AGAGCACTGTATGGGTGTAGCACCCTTCCTGATATACACCAAAGACAATCATATGAGGGAGCAGCTCCTTaGAGACATCTCGGGTACCAA | + |
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Preference number: 4 (lower is better) Translates to: RALYGCSTLPDIHQRQSYEGAAP*RHLGYQ Trigger: TTGGTACCCGAGATGTCTGCAAGGAGCTGCTCCCTC...ATATGATTGTCTTTGGTGTATATCAGGAAGGGTGCTACACCCATACAGTGCTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039659.9 |
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| CDS-3UTR GCA 90 bp | CAAGAGCACTGTATGGGTGTAGCACCCTTCCTGATATACACCAAAGACAATCATGTACACAGGGGTCTCTaGTCCTTCTTCTGGGCTTTT | + |
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Preference number: 4 (lower is better) Translates to: QEHCMGVAPFLIYTKDNHVHRGL*SFFWAF Trigger: AAAAGCCCAGAAGAAGGAGCAGAGACCCCTGTGTAC...ATGATTGTCTTTGGTGTATATCAGGAAGGGTGCTACACCCATACAGTGCTCTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039659.9 |
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| CDS-3UTR CCA 90 bp | CAAGAGCACTGTATGGGTGTAGCACCCTTCCTGATATACACCAAAGACAATCATGCTTTTGGTGGCTTTTaGTCCTGCCATGTCGGTTCT | + |
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Preference number: 4 (lower is better) Translates to: QEHCMGVAPFLIYTKDNHAFGGF*SCHVGS Trigger: AGAACCGACATGGCAGGACCAAAAGCCACCAAAAGC...ATGATTGTCTTTGGTGTATATCAGGAAGGGTGCTACACCCATACAGTGCTCTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039659.9 |
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| CDS-3UTR CCA 90 bp | CAAGAGCACTGTATGGGTGTAGCACCCTTCCTGATATACACCAAAGACAATCATCTTCTGGGCTTTTGGTaGCTTTTGGTCCTGCCATGT | + |
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Preference number: 4 (lower is better) Translates to: QEHCMGVAPFLIYTKDNHLLGFW*LLVLPC Trigger: ACATGGCAGGACCAAAAGCCACCAAAAGCCCAGAAG...ATGATTGTCTTTGGTGTATATCAGGAAGGGTGCTACACCCATACAGTGCTCTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039659.9 |
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| CDS-3UTR CCA 90 bp | CAAGAGCACTGTATGGGTGTAGCACCCTTCCTGATATACACCAAAGACAATCATTTCACCACTCTGCCTTaGGGTTTTATTAGAGGGAGC | + |
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Preference number: 4 (lower is better) Translates to: QEHCMGVAPFLIYTKDNHFTTLP*GFIRGS Trigger: GCTCCCTCTAATAAAACCCCAAGGCAGAGTGGTGAA...ATGATTGTCTTTGGTGTATATCAGGAAGGGTGCTACACCCATACAGTGCTCTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039659.9 |
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| CDS-3UTR CCA 90 bp | AGAGCACTGTATGGGTGTAGCACCCTTCCTGATATACACCAAAGACAATCATATCTTCTTCTGGGCTTTTaGTGGCTTTTGGTCCTGCCA | + |
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Preference number: 4 (lower is better) Translates to: RALYGCSTLPDIHQRQSYLLLGF*WLLVLP Trigger: TGGCAGGACCAAAAGCCACCAAAAGCCCAGAAGAAG...ATATGATTGTCTTTGGTGTATATCAGGAAGGGTGCTACACCCATACAGTGCTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039659.9 |
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| CDS-3UTR GCA 90 bp | CAAGAGCACTGTATGGGTGTAGCACCCTTCCTGATATACACCAAAGACAATCATACACATTCACCACTCTaGCTTGGGGTTTTATTAGAG | + |
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Preference number: 4 (lower is better) Translates to: QEHCMGVAPFLIYTKDNHTHSPL*LGVLLE Trigger: CTCTAATAAAACCCCAAGGCAGAGTGGTGAATGTGT...ATGATTGTCTTTGGTGTATATCAGGAAGGGTGCTACACCCATACAGTGCTCTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039659.9 |
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| CDS-3UTR CAA 90 bp | CTGCAGCTCCAGCCTGCAGTTTTTCAGGGCCCTGAGACTCACCATGCTGGACACCTCCGCCTGCAGCTTTaGCACTGCCGTTTGGCCCCG | + |
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Preference number: 5 (lower is better) Translates to: LQLQPAVFQGPETHHAGHLRLQL*HCRLAP Trigger: CGGGGCCAAACGGCAGTGCAAAAGCTGCAGGCGGAG...GTGTCCAGCATGGTGAGTCTCAGGGCCCTGAAAAACTGCAGGCTGGAGCTGCAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000231762.2 |
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| CDS-3UTR CAA 90 bp | ACCAGCTCCTCCTCTGTGATGGTCTCGCTTCGAAACTTCTGCTGCAGCTCCAGCGCGATGCCTGCGTTGTaGACCAGCACGTCCAGGCCT | + |
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Preference number: 5 (lower is better) Translates to: TSSSSVMVSLRNFCCSSSAMPAL*TSTSRP Trigger: AGGCCTGGACGTGCTGGTCAACAACGCAGGCATCGC...GCTGGAGCTGCAGCAGAAGTTTCGAAGCGAGACCATCACAGAGGAGGAGCTGGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231762.2 |
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| CDS-3UTR CAA 90 bp | GGTCTCGCTTCGAAACTTCTGCTGCAGCTCCAGCCTGCAGTTTTTCAGGGCCCTGTGTCGTCATTGACCTaGAAGGCGATGCCTGCGTTG | + |
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Preference number: 5 (lower is better) Translates to: GLASKLLLQLQPAVFQGPVSSLT*KAMPAL Trigger: CAACGCAGGCATCGCCTTCAAGGTCAATGACGACAC...AGGGCCCTGAAAAACTGCAGGCTGGAGCTGCAGCAGAAGTTTCGAAGCGAGACC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000231762.2 |
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| CDS-3UTR CAA 90 bp | ATGAGCCCCACCAGCTCCTCCTCTGTGATGGTCTCGCTTCGAAACTTCTGCTGCCATTGTCACCTCTGCTaGAATGTGGAAGGGGGTGTC | + |
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Preference number: 5 (lower is better) Translates to: MSPTSSSSVMVSLRNFCCHCHLC*NVEGGV Trigger: GACACCCCCTTCCACATTCAAGCAGAGGTGACAATG...GCAGCAGAAGTTTCGAAGCGAGACCATCACAGAGGAGGAGCTGGTGGGGCTCAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000231762.2 |
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| CDS-3UTR CAA 90 bp | AGAGCACTGTATGGGTGTAGCACCCTTCCTGATATACACCAAAGACAATCATATCTCCGCCTGCAGCTTTaGCACTGCCGTTTGGCCCCG | + |
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Preference number: 5 (lower is better) Translates to: RALYGCSTLPDIHQRQSYLRLQL*HCRLAP Trigger: CGGGGCCAAACGGCAGTGCAAAAGCTGCAGGCGGAG...ATATGATTGTCTTTGGTGTATATCAGGAAGGGTGCTACACCCATACAGTGCTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039659.9 |
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| CDS-3UTR CAA 90 bp | AGAGCACTGTATGGGTGTAGCACCCTTCCTGATATACACCAAAGACAATCATATGCGATGCCTGCGTTGTaGACCAGCACGTCCAGGCCT | + |
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Preference number: 5 (lower is better) Translates to: RALYGCSTLPDIHQRQSYAMPAL*TSTSRP Trigger: AGGCCTGGACGTGCTGGTCAACAACGCAGGCATCGC...ATATGATTGTCTTTGGTGTATATCAGGAAGGGTGCTACACCCATACAGTGCTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039659.9 |
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| CDS-3UTR CAA 90 bp | AGAGCACTGTATGGGTGTAGCACCCTTCCTGATATACACCAAAGACAATCATATAAGGCGATGCCTGCGTaGTTGACCAGCACGTCCAGG | + |
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Preference number: 5 (lower is better) Translates to: RALYGCSTLPDIHQRQSYKAMPA*LTSTSR Trigger: CCTGGACGTGCTGGTCAACAACGCAGGCATCGCCTT...ATATGATTGTCTTTGGTGTATATCAGGAAGGGTGCTACACCCATACAGTGCTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039659.9 |
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| CDS-3UTR CAA 90 bp | CAAGAGCACTGTATGGGTGTAGCACCCTTCCTGATATACACCAAAGACAATCATGTGTCGTCATTGACCTaGAAGGCGATGCCTGCGTTG | + |
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Preference number: 5 (lower is better) Translates to: QEHCMGVAPFLIYTKDNHVSSLT*KAMPAL Trigger: CAACGCAGGCATCGCCTTCAAGGTCAATGACGACAC...ATGATTGTCTTTGGTGTATATCAGGAAGGGTGCTACACCCATACAGTGCTCTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039659.9 |
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| CDS-3UTR CAA 90 bp | CTCGCTTCGAAACTTCTGCTGCAGCTCCAGCCTGCAGTTTTTCAGGGCCCTGAGAAAAGTTCGTTTTCATaGTCACCTCTGCTTGAATGT | + |
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Preference number: 5 (lower is better) Translates to: LASKLLLQLQPAVFQGPEKSSFS*SPLLEC Trigger: ACATTCAAGCAGAGGTGACAATGAAAACGAACTTTT...CTCAGGGCCCTGAAAAACTGCAGGCTGGAGCTGCAGCAGAAGTTTCGAAGCGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000231762.2 |
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| CDS-3UTR CAA 90 bp | CAAGAGCACTGTATGGGTGTAGCACCCTTCCTGATATACACCAAAGACAATCATCATTGTCACCTCTGCTaGAATGTGGAAGGGGGTGTC | + |
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Preference number: 5 (lower is better) Translates to: QEHCMGVAPFLIYTKDNHHCHLC*NVEGGV Trigger: GACACCCCCTTCCACATTCAAGCAGAGGTGACAATG...ATGATTGTCTTTGGTGTATATCAGGAAGGGTGCTACACCCATACAGTGCTCTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039659.9 |
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| CDS-3UTR CAA 90 bp | CAAGAGCACTGTATGGGTGTAGCACCCTTCCTGATATACACCAAAGACAATCATGCATTCAGAAGGATCTaGTCCCCTCTCCTCTGCTCA | + |
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Preference number: 5 (lower is better) Translates to: QEHCMGVAPFLIYTKDNHAFRRI*SPLLCS Trigger: TGAGCAGAGGAGAGGGGACAAGATCCTTCTGAATGC...ATGATTGTCTTTGGTGTATATCAGGAAGGGTGCTACACCCATACAGTGCTCTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039659.9 |
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| CDS-3UTR CAA 90 bp | AGAGCACTGTATGGGTGTAGCACCCTTCCTGATATACACCAAAGACAATCATATGGCTTTTGGTGGCTTTaGGTCCTGCCATGTCGGTTC | + |
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Preference number: 5 (lower is better) Translates to: RALYGCSTLPDIHQRQSYGFWWL*VLPCRF Trigger: GAACCGACATGGCAGGACCAAAAGCCACCAAAAGCC...ATATGATTGTCTTTGGTGTATATCAGGAAGGGTGCTACACCCATACAGTGCTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039659.9 |
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| CDS-3UTR CAA 90 bp | AGAGCACTGTATGGGTGTAGCACCCTTCCTGATATACACCAAAGACAATCATATGTATCTTCCACAAACTaGTTCATGAGCCCCACCAGC | + |
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Preference number: 5 (lower is better) Translates to: RALYGCSTLPDIHQRQSYVSSTN*FMSPTS Trigger: GCTGGTGGGGCTCATGAACAAGTTTGTGGAAGATAC...ATATGATTGTCTTTGGTGTATATCAGGAAGGGTGCTACACCCATACAGTGCTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039659.9 |
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| CDS-3UTR CAA 90 bp | AGAGCACTGTATGGGTGTAGCACCCTTCCTGATATACACCAAAGACAATCATATAAAAGTTCGTTTTCATaGTCACCTCTGCTTGAATGT | + |
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Preference number: 5 (lower is better) Translates to: RALYGCSTLPDIHQRQSYKSSFS*SPLLEC Trigger: ACATTCAAGCAGAGGTGACAATGAAAACGAACTTTT...ATATGATTGTCTTTGGTGTATATCAGGAAGGGTGCTACACCCATACAGTGCTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039659.9 |
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| CDS GCA 72 bp | TGCTCCTTCTTCTGGGCTTTTGGTGGCTTTTGGTCCTaGCATGTCGGTTCTGACCCACCCAGGGCAGCAGGC | + |
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Preference number: 6 (lower is better) Translates to: CSFFWAFGGFWS*HVGSDPPRAAG Trigger: GCCTGCTGCCCTGGGTGGGTCAGAACCGACATGGCAGGACCAAAAGCCACCAAAAGCCCAGAAGAAGGAGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039659.9 |
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| CDS CAA 72 bp | CTGACCCACCCAGGGCAGCAGGCATTCAGAAGGATCTaGTCCCCTCTCCTCTGCTCATTAAGTTTCCTGGCA | + |
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Preference number: 6 (lower is better) Translates to: LTHPGQQAFRRI*SPLLCSLSFLA Trigger: TGCCAGGAAACTTAATGAGCAGAGGAGAGGGGACAAGATCCTTCTGAATGCCTGCTGCCCTGGGTGGGTCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039659.9 |
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| CDS CAA 90 bp | ATGTCGGTTCTGACCCACCCAGGGCAGCAGGCATTCAGAAGGATCTaGTCCCCTCTCCTCTGCTCATTAAGTTTCCTGGCAAGGATTCTG | + |
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Preference number: 6 (lower is better) Translates to: MSVLTHPGQQAFRRI*SPLLCSLSFLARIL Trigger: CAGAATCCTTGCCAGGAAACTTAATGAGCAGAGGAGAGGGGACAAGATCCTTCTGAATGCCTGCTGCCCTGGGTGGGTCAGAACCGACAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039659.9 |
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| CDS CAA 90 bp | TTAAGTTTCCTGGCAAGGATTCTGGACAGGACTGTCACCCCAATCTaGGTGACCCCATATGCACTATTAGGCCAACCTTCTTCCGCATGG | + |
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Preference number: 6 (lower is better) Translates to: LSFLARILDRTVTPI*VTPYALLGQPSSAW Trigger: CCATGCGGAAGAAGGTTGGCCTAATAGTGCATATGGGGTCACCAAGATTGGGGTGACAGTCCTGTCCAGAATCCTTGCCAGGAAACTTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039659.9 |
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