Pregenerated sensors for CBLN4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000067578Ensembl transcript IDs: ENSMUST00000087950.4
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | GGCAGGAGGGAGGTCATGTGGGTGAGTTCAGAGTTAAGGGACATTTaGAGGCAAGACATTTGTTACCTTATGGGTAGAGAGAACACAACG | + |
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Preference number: 2 (lower is better) Translates to: GRREVMWVSSELRDI*RQDICYLMGRENTT Trigger: CGTTGTGTTCTCTCTACCCATAAGGTAACAAATGTCTTGCCTCAAAATGTCCCTTAACTCTGAACTCACCCACATGACCTCCCTCCTGCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087950.4 |
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| 3UTR-3UTR TCA 90 bp | TGTATCCACACGTGTATACATGTCTTTGGCAGTTCCACTATAACCACTGAAGTCGCACACACACGAAAATaGTCTGTGAAACTTTGTGTC | + |
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Preference number: 2 (lower is better) Translates to: CIHTCIHVFGSSTITTEVAHTRK*SVKLCV Trigger: GACACAAAGTTTCACAGATCATTTTCGTGTGTGTGC...GACTTCAGTGGTTATAGTGGAACTGCCAAAGACATGTATACACGTGTGGATACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087950.4 |
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| 3UTR-3UTR TCA 90 bp | GTAGAGAGAACACAACGCCAGTCACTAAAATACAATCCCAGTTACCTTAAGAGATTCCACTATAACCACTaGAGTCAGAACTTCCAAGTT | + |
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Preference number: 2 (lower is better) Translates to: VERTQRQSLKYNPSYLKRFHYNH*SQNFQV Trigger: AACTTGGAAGTTCTGACTTCAGTGGTTATAGTGGAA...TCTCTTAAGGTAACTGGGATTGTATTTTAGTGACTGGCGTTGTGTTCTCTCTAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087950.4 |
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| 3UTR-3UTR TCA 90 bp | AATAATCAATGTATCCACACGTGTATACATGTCTTTGGCAGTTCCACTATAACCCACGAAAATGATCTGTaGAACTTTGTGTCTGTCCAG | + |
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Preference number: 2 (lower is better) Translates to: NNQCIHTCIHVFGSSTITHENDL*NFVSVQ Trigger: CTGGACAGACACAAAGTTTCACAGATCATTTTCGTG...GGTTATAGTGGAACTGCCAAAGACATGTATACACGTGTGGATACATTGATTATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087950.4 |
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| 3UTR GCA 72 bp | ATAGAGTATTCGATTTCCCACCAAGGAGAGGTACTTTaGCAAGGTTTGGCGCTGAGCATTAGAGTTGGGGTA | + |
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Preference number: 3 (lower is better) Translates to: IEYSISHQGEVL*QGLALSIRVGV Trigger: TACCCCAACTCTAATGCTCAGCGCCAAACCTTGGCAAAGTACCTCTCCTTGGTGGGAAATCGAATACTCTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087950.4 |
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| 3UTR TCA 72 bp | AGTCCACATATAAGGAAACTGGCACACACACGAAAATaGTCTGTGAAACTTTGTGTCTGTCCAGACAGGTCT | + |
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Preference number: 3 (lower is better) Translates to: SPHIRKLAHTRK*SVKLCVCPDRS Trigger: AGACCTGTCTGGACAGACACAAAGTTTCACAGATCATTTTCGTGTGTGTGCCAGTTTCCTTATATGTGGACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087950.4 |
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| CDS-3UTR CCA 90 bp | CATCAATCCAAGAGTGCTCTTCTGATAACCCGGGGTGGGCGCCCTCACTCTTGGCTTGGAGTCTGTAGCTaGGTTCGAGTCGCACACCAC | + |
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Preference number: 4 (lower is better) Translates to: HQSKSALLITRGGRPHSWLGVCS*VRVAHH Trigger: GTGGTGTGCGACTCGAACCCAGCTACAGACTCCAAG...CCAAGAGTGAGGGCGCCCACCCCGGGTTATCAGAAGAGCACTCTTGGATTGATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087950.4 |
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| CDS-3UTR GCA 90 bp | CATCAATCCAAGAGTGCTCTTCTGATAACCCGGGGTGGGCGCCCTCACTCTTGGGAAAACGTGGAATACTaGCAGCCACCGAGCAAGTTA | + |
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Preference number: 4 (lower is better) Translates to: HQSKSALLITRGGRPHSWENVEY*QPPSKL Trigger: TAACTTGCTCGGTGGCTGGCAGTATTCCACGTTTTC...CCAAGAGTGAGGGCGCCCACCCCGGGTTATCAGAAGAGCACTCTTGGATTGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087950.4 |
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| CDS-3UTR GCA 90 bp | CAAGAGTGCTCTTCTGATAACCCGGGGTGGGCGCCCTCACTCTTGGGCATCACGTTTATCACCAGCAAATaGAGAGATGACTGGTTTTCC | + |
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Preference number: 4 (lower is better) Translates to: QECSSDNPGWAPSLLGITFITSK*RDDWFS Trigger: GGAAAACCAGTCATCTCTGCATTTGCTGGTGATAAA...CGTGATGCCCAAGAGTGAGGGCGCCCACCCCGGGTTATCAGAAGAGCACTCTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087950.4 |
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| CDS-3UTR GCA 90 bp | GTAGAGAGAACACAACGCCAGTCACTAAAATACAATCCCAGTTACCTTAAGAGACACCTTGGAGTTTGCTaGCCGGACCGATATCCCCAG | + |
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Preference number: 4 (lower is better) Translates to: VERTQRQSLKYNPSYLKRHLGVC*PDRYPQ Trigger: CTGGGGATATCGGTCCGGGCAGCAAACTCCAAGGTG...TCTCTTAAGGTAACTGGGATTGTATTTTAGTGACTGGCGTTGTGTTCTCTCTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087950.4 |
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| CDS-3UTR GCA 90 bp | GTAGAGAGAACACAACGCCAGTCACTAAAATACAATCCCAGTTACCTTAAGAGAAGCCACCTTGGAGTTTaGTGCCCGGACCGATATCCC | + |
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Preference number: 4 (lower is better) Translates to: VERTQRQSLKYNPSYLKRSHLGV*CPDRYP Trigger: GGGATATCGGTCCGGGCAGCAAACTCCAAGGTGGCT...TCTCTTAAGGTAACTGGGATTGTATTTTAGTGACTGGCGTTGTGTTCTCTCTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087950.4 |
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| CDS-3UTR GCA 90 bp | GTAGAGAGAACACAACGCCAGTCACTAAAATACAATCCCAGTTACCTTAAGAGAACACCACCAGACACTTaGCCTCCAGAACGATCGGTT | + |
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Preference number: 4 (lower is better) Translates to: VERTQRQSLKYNPSYLKRTPPDT*PPERSV Trigger: AACCGATCGTTCTGGAGGGCAAGTGTCTGGTGGTGT...TCTCTTAAGGTAACTGGGATTGTATTTTAGTGACTGGCGTTGTGTTCTCTCTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087950.4 |
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| CDS-3UTR CCA 90 bp | AATAATCAATGTATCCACACGTGTATACATGTCTTTGGCAGTTCCACTATAACCCAGATGGCTCGTGGTTaGTGCTCCGAACCGCCGAAA | + |
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Preference number: 4 (lower is better) Translates to: NNQCIHTCIHVFGSSTITQMARG*CSEPPK Trigger: TTTCGGCGGTTCGGAGCACCAACCACGAGCCATCTG...GGTTATAGTGGAACTGCCAAAGACATGTATACACGTGTGGATACATTGATTATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087950.4 |
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| CDS-3UTR GCA 90 bp | AATAATCAATGTATCCACACGTGTATACATGTCTTTGGCAGTTCCACTATAACCATGGCTCGTGGTTGGTaGTCCGAACCGCCGAAAAAG | + |
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Preference number: 4 (lower is better) Translates to: NNQCIHTCIHVFGSSTITMARGW*SEPPKK Trigger: CTTTTTCGGCGGTTCGGAGCACCAACCACGAGCCAT...GGTTATAGTGGAACTGCCAAAGACATGTATACACGTGTGGATACATTGATTATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087950.4 |
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| 3UTR CAA 72 bp | GAGGTCATGTGGGTGAGTTCAGAGTTAAGGGACATTTaGAGGCAAGACATTTGTTACCTTATGGGTAGAGAG | + |
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Preference number: 4 (lower is better) Translates to: EVMWVSSELRDI*RQDICYLMGRE Trigger: CTCTCTACCCATAAGGTAACAAATGTCTTGCCTCAAAATGTCCCTTAACTCTGAACTCACCCACATGACCTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087950.4 |
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| CDS-3UTR TCA 90 bp | TGTATCCACACGTGTATACATGTCTTTGGCAGTTCCACTATAACCACTGAAGTCTCTGATCAAAGTAAATaGTGCGAGTCTTGTTGCTCA | + |
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Preference number: 4 (lower is better) Translates to: CIHTCIHVFGSSTITTEVSDQSK*CESCCS Trigger: TGAGCAACAAGACTCGCATCATTTACTTTGATCAGA...GACTTCAGTGGTTATAGTGGAACTGCCAAAGACATGTATACACGTGTGGATACA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087950.4 |
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| CDS-3UTR TCA 90 bp | TGTATCCACACGTGTATACATGTCTTTGGCAGTTCCACTATAACCACTGAAGTCCAGCAAATGCAGAGATaGCTGGTTTTCCATTTAACA | + |
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Preference number: 4 (lower is better) Translates to: CIHTCIHVFGSSTITTEVQQMQR*LVFHLT Trigger: TGTTAAATGGAAAACCAGTCATCTCTGCATTTGCTG...GACTTCAGTGGTTATAGTGGAACTGCCAAAGACATGTATACACGTGTGGATACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087950.4 |
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| CDS-3UTR GCA 90 bp | AAGGGCATACTATCTCCAGTTAATAAAGTGGTCATAGTGAAGGAGAAAATATTCGATTCCTTTCCTCGGTaGCACAAAGACAGATTCCAA | + |
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Preference number: 4 (lower is better) Translates to: KGILSPVNKVVIVKEKIFDSFPR*HKDRFQ Trigger: TTGGAATCTGTCTTTGTGGCACCGAGGAAAGGAATC...GAATATTTTCTCCTTCACTATGACCACTTTATTAACTGGAGATAGTATGCCCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087950.4 |
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| CDS-3UTR CAA 90 bp | TGTATCCACACGTGTATACATGTCTTTGGCAGTTCCACTATAACCACTGAAGTCAAGCCACCTTGGAGTTaGCTGCCCGGACCGATATCC | + |
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Preference number: 5 (lower is better) Translates to: CIHTCIHVFGSSTITTEVKPPWS*LPGPIS Trigger: GGATATCGGTCCGGGCAGCAAACTCCAAGGTGGCTT...GACTTCAGTGGTTATAGTGGAACTGCCAAAGACATGTATACACGTGTGGATACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087950.4 |
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| CDS-3UTR CAA 90 bp | AATAATCAATGTATCCACACGTGTATACATGTCTTTGGCAGTTCCACTATAACCTCAGATGGCTCGTGGTaGGTGCTCCGAACCGCCGAA | + |
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Preference number: 5 (lower is better) Translates to: NNQCIHTCIHVFGSSTITSDGSW*VLRTAE Trigger: TTCGGCGGTTCGGAGCACCAACCACGAGCCATCTGA...GGTTATAGTGGAACTGCCAAAGACATGTATACACGTGTGGATACATTGATTATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087950.4 |
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| CDS-3UTR CAA 90 bp | GTAGAGAGAACACAACGCCAGTCACTAAAATACAATCCCAGTTACCTTAAGAGAGTTAACCTGGATGGTTaGGCTCTGGTAGACTTTAAT | + |
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Preference number: 5 (lower is better) Translates to: VERTQRQSLKYNPSYLKRVNLDG*ALVDFN Trigger: ATTAAAGTCTACCAGAGCCAAACCATCCAGGTTAAC...TCTCTTAAGGTAACTGGGATTGTATTTTAGTGACTGGCGTTGTGTTCTCTCTAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087950.4 |
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