Pregenerated sensors for CBLIF (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024682Ensembl transcript IDs: ENSMUST00000025585.4
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | ACAATGGTGAGCACCTGCATCATTTATTCCACACAGTaGCTCAGGAAGAGAGTAGCATTGTTAATATCTGCT | + |
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Preference number: 3 (lower is better) Translates to: TMVSTCIIYSTQ*LRKRVALLISA Trigger: AGCAGATATTAACAATGCTACTCTCTTCCTGAGCCACTGTGTGGAATAAATGATGCAGGTGCTCACCATTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS-3UTR TCA 90 bp | GGTGAGCACCTGCATCATTTATTCCACACAGTGGCTCAGGAAGAGAGTAGCATTCTCCTGTGTCCACATTaGAGGGAGAGGGTTCCATCA | + |
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Preference number: 4 (lower is better) Translates to: GEHLHHLFHTVAQEESSILLCPH*RERVPS Trigger: TGATGGAACCCTCTCCCTTCAATGTGGACACAGGAG...AATGCTACTCTCTTCCTGAGCCACTGTGTGGAATAAATGATGCAGGTGCTCACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS-3UTR CCA 90 bp | CATTTATTCCACACAGTGGCTCAGGAAGAGAGTAGCATTGTTAATATCTGCTTTTCTGGGCACGGGTGCTaGTTCCTGCCACAGCCCAGA | + |
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Preference number: 4 (lower is better) Translates to: HLFHTVAQEESSIVNICFSGHGC*FLPQPR Trigger: TCTGGGCTGTGGCAGGAACCAGCACCCGTGCCCAGA...AAAGCAGATATTAACAATGCTACTCTCTTCCTGAGCCACTGTGTGGAATAAATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS-3UTR GCA 90 bp | ACAATGGTGAGCACCTGCATCATTTATTCCACACAGTGGCTCAGGAAGAGAGTATCATGGCAATCAGGATaGTGGGGTTTGGGAAGTCTG | + |
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Preference number: 4 (lower is better) Translates to: TMVSTCIIYSTQWLRKRVSWQSG*WGLGSL Trigger: CAGACTTCCCAAACCCCAGCATCCTGATTGCCATGA...TACTCTCTTCCTGAGCCACTGTGTGGAATAAATGATGCAGGTGCTCACCATTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS-3UTR GCA 90 bp | TCCACACAGTGGCTCAGGAAGAGAGTAGCATTGTTAATATCTGCTTTTCTTGGCGGCCAAGGTTGCCACTaGTCCTGTGTCCACATTGAA | + |
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Preference number: 4 (lower is better) Translates to: STQWLRKRVALLISAFLGGQGCH*SCVHIE Trigger: TTCAATGTGGACACAGGAGCAGTGGCAACCTTGGCC...GCCAAGAAAAGCAGATATTAACAATGCTACTCTCTTCCTGAGCCACTGTGTGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS-3UTR GCA 90 bp | TGCATCATTTATTCCACACAGTGGCTCAGGAAGAGAGTAGCATTGTTAATATCTGTCACGGAGAGAGCCTaGATGGCAAGGCCAGTGCTG | + |
|
Preference number: 4 (lower is better) Translates to: CIIYSTQWLRKRVALLISVTERA*MARPVL Trigger: CAGCACTGGCCTTGCCATGCAGGCTCTCTCCGTGAC...AGATATTAACAATGCTACTCTCTTCCTGAGCCACTGTGTGGAATAAATGATGCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS-3UTR CCA 90 bp | CAAAAATTTTATTGCATGAGTCACAATGGTGAGCACCTGCATCATTTATTCCACCGCCGGCCAGGTTCATaGCAATCAGGATGCTGGGGT | + |
|
Preference number: 4 (lower is better) Translates to: QKFYCMSHNGEHLHHLFHRRPGS*QSGCWG Trigger: ACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCG...GTGGAATAAATGATGCAGGTGCTCACCATTGTGACTCATGCAATAAAATTTTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS-3UTR CCA 90 bp | ATCATTTATTCCACACAGTGGCTCAGGAAGAGAGTAGCATTGTTAATATCTGCTCGGAGAGAGCCTGCATaGCAAGGCCAGTGCTGTAGA | + |
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Preference number: 4 (lower is better) Translates to: IIYSTQWLRKRVALLISARREPA*QGQCCR Trigger: TCTACAGCACTGGCCTTGCCATGCAGGCTCTCTCCG...AGCAGATATTAACAATGCTACTCTCTTCCTGAGCCACTGTGTGGAATAAATGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS-3UTR TCA 90 bp | CATTTATTCCACACAGTGGCTCAGGAAGAGAGTAGCATTGTTAATATCTGCTTTGGGGTTTGGGAAGTCTaGGTCAGTCACCGAGTTCTC | + |
|
Preference number: 4 (lower is better) Translates to: HLFHTVAQEESSIVNICFGVWEV*VSHRVL Trigger: GAGAACTCGGTGACTGACTCAGACTTCCCAAACCCC...AAAGCAGATATTAACAATGCTACTCTCTTCCTGAGCCACTGTGTGGAATAAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS-3UTR CCA 90 bp | CAAAAATTTTATTGCATGAGTCACAATGGTGAGCACCTGCATCATTTATTCCACACAGAGCAAGAGCTCTaGGCACGGGTGCTGGTTCCT | + |
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Preference number: 4 (lower is better) Translates to: QKFYCMSHNGEHLHHLFHTEQEL*ARVLVP Trigger: AGGAACCAGCACCCGTGCCCAGAGCTCTTGCTCTGT...GTGGAATAAATGATGCAGGTGCTCACCATTGTGACTCATGCAATAAAATTTTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS-3UTR TCA 90 bp | AATGGTGAGCACCTGCATCATTTATTCCACACAGTGGCTCAGGAAGAGAGTAGCTCCCAGTATGTCTTGTaGTTAACATTCTCAGCGATA | + |
|
Preference number: 4 (lower is better) Translates to: NGEHLHHLFHTVAQEESSSQYVL*LTFSAI Trigger: TATCGCTGAGAATGTTAATCACAAGACATACTGGGA...GCTACTCTCTTCCTGAGCCACTGTGTGGAATAAATGATGCAGGTGCTCACCATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS-3UTR GCA 90 bp | TTCCACACAGTGGCTCAGGAAGAGAGTAGCATTGTTAATATCTGCTTTTCTTGGCACAATAGCCTTCAGTaGCTGACCAAACAGGTCTCT | + |
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Preference number: 4 (lower is better) Translates to: FHTVAQEESSIVNICFSWHNSLQ*LTKQVS Trigger: AGAGACCTGTTTGGTCAGGCACTGAAGGCTATTGTG...CCAAGAAAAGCAGATATTAACAATGCTACTCTCTTCCTGAGCCACTGTGTGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS-3UTR CCA 90 bp | ACAATGGTGAGCACCTGCATCATTTATTCCACACAGTGGCTCAGGAAGAGAGTAATGGACATGGGGTTTTaGAATTTCCCTTGCTTAATC | + |
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Preference number: 4 (lower is better) Translates to: TMVSTCIIYSTQWLRKRVMDMGF*NFPCLI Trigger: GATTAAGCAAGGGAAATTCCAAAACCCCATGTCCAT...TACTCTCTTCCTGAGCCACTGTGTGGAATAAATGATGCAGGTGCTCACCATTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS-3UTR CCA 90 bp | TCCACACAGTGGCTCAGGAAGAGAGTAGCATTGTTAATATCTGCTTTTCTTGGCTTTTCTTCAGTAGAGTaGACACTTTACTTCCAGGGT | + |
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Preference number: 4 (lower is better) Translates to: STQWLRKRVALLISAFLGFSSVE*TLYFQG Trigger: ACCCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAA...GCCAAGAAAAGCAGATATTAACAATGCTACTCTCTTCCTGAGCCACTGTGTGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS-3UTR CCA 90 bp | CAGTGGCTCAGGAAGAGAGTAGCATTGTTAATATCTGCTTTTCTTGGCACAGATTTTGGGCAATGGACATaGGGTTTTGGAATTTCCCTT | + |
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Preference number: 4 (lower is better) Translates to: QWLRKRVALLISAFLGTDFGQWT*GFGISL Trigger: AAGGGAAATTCCAAAACCCCATGTCCATTGCCCAAA...ATCTGTGCCAAGAAAAGCAGATATTAACAATGCTACTCTCTTCCTGAGCCACTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS-3UTR TCA 90 bp | TGGCTCAGGAAGAGAGTAGCATTGTTAATATCTGCTTTTCTTGGCACAGATTTGTGGTGGTTTCAAATTTaGACATGGAGTTTTTGCGCT | + |
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Preference number: 4 (lower is better) Translates to: WLRKRVALLISAFLGTDLWWFQI*TWSFCA Trigger: AGCGCAAAAACTCCATGTTCAAATTTGAAACCACCA...CAAATCTGTGCCAAGAAAAGCAGATATTAACAATGCTACTCTCTTCCTGAGCCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS-3UTR GCA 90 bp | ATCATTTATTCCACACAGTGGCTCAGGAAGAGAGTAGCATTGTTAATATCTGCTCATCTAGGTAAGTCTTaGCTTTCAAGGAAGGGAGAA | + |
|
Preference number: 4 (lower is better) Translates to: IIYSTQWLRKRVALLISAHLGKS*LSRKGE Trigger: TTCTCCCTTCCTTGAAAGGCAAGACTTACCTAGATG...AGCAGATATTAACAATGCTACTCTCTTCCTGAGCCACTGTGTGGAATAAATGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS-3UTR CCA 90 bp | GTGGCTCAGGAAGAGAGTAGCATTGTTAATATCTGCTTTTCTTGGCACAGATTTTCAACCCCTCTCAGCTaGTTGTTTATGGTATATATG | + |
|
Preference number: 4 (lower is better) Translates to: VAQEESSIVNICFSWHRFSTPLS*LFMVYM Trigger: CATATATACCATAAACAACCAGCTGAGAGGGGTTGA...AAATCTGTGCCAAGAAAAGCAGATATTAACAATGCTACTCTCTTCCTGAGCCAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS GCA 90 bp | AGGGTTGCTGATCTGGGGGCACAGAGCAAGAGCTCTGGGCACGGGTaGTGGTTCCTGCCACAGCCCAGAGAACACTTAGGAGGTAGAGGG | + |
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Preference number: 5 (lower is better) Translates to: RVADLGAQSKSSGHG*WFLPQPREHLGGRG Trigger: CCCTCTACCTCCTAAGTGTTCTCTGGGCTGTGGCAGGAACCAGCACCCGTGCCCAGAGCTCTTGCTCTGTGCCCCCAGATCAGCAACCCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS TCA 90 bp | GGATGCTGGGGTTTGGGAAGTCTGAGTCAGTCACCGAGTTCTCCATaGGCGCTTGTAGGCCATCGACCCAGGGTTGCTGATCTGGGGGCA | + |
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Preference number: 5 (lower is better) Translates to: GCWGLGSLSQSPSSP*ALVGHRPRVADLGA Trigger: TGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS GCA 90 bp | CGTGAGAGCCATAACGGTGAGGGCAAGCTGCCCACTTGTCAGGTCTaGACTGTCACTGGCCATGAGCTGGTAAGTCAGGAGTTTCTGGGC | + |
|
Preference number: 5 (lower is better) Translates to: RESHNGEGKLPTCQV*TVTGHELVSQEFLG Trigger: GCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAGACCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS-3UTR CAA 90 bp | AATGGTGAGCACCTGCATCATTTATTCCACACAGTGGCTCAGGAAGAGAGTAGCGCCATCGACCCAGGGTaGCTGATCTGGGGGCACAGA | + |
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Preference number: 5 (lower is better) Translates to: NGEHLHHLFHTVAQEESSAIDPG*LIWGHR Trigger: TCTGTGCCCCCAGATCAGCAACCCTGGGTCGATGGC...GCTACTCTCTTCCTGAGCCACTGTGTGGAATAAATGATGCAGGTGCTCACCATT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS GCA 90 bp | AGTATTGTATGCATAGTCTTCTCACAGTCCCACTTCTTGGTAGGTTaGTCAGGTGTCACGGAGAGAGCCTGCATGGCAAGGCCAGTGCTG | + |
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Preference number: 5 (lower is better) Translates to: SIVCIVFSQSHFLVG*SGVTERACMARPVL Trigger: CAGCACTGGCCTTGCCATGCAGGCTCTCTCCGTGACACCTGAGCAACCTACCAAGAAGTGGGACTGTGAGAAGACTATGCATACAATACT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS-3UTR CAA 90 bp | AATGGTGAGCACCTGCATCATTTATTCCACACAGTGGCTCAGGAAGAGAGTAGCTCATCCAAAGGCGTTTaGCCACTAAGAAACTCCCAG | + |
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Preference number: 5 (lower is better) Translates to: NGEHLHHLFHTVAQEESSSSKGV*PLRNSQ Trigger: CTGGGAGTTTCTTAGTGGCAAAACGCCTTTGGATGA...GCTACTCTCTTCCTGAGCCACTGTGTGGAATAAATGATGCAGGTGCTCACCATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS GCA 90 bp | CATGATCAGGACCACATGTTACTTGGGGCACATCTAGGTAAGTCTTaGCTTTCAAGGAAGGGAGAATTTGGGCAATGGACATGGGGTTTT | + |
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Preference number: 5 (lower is better) Translates to: HDQDHMLLGAHLGKS*LSRKGEFGQWTWGF Trigger: AAAACCCCATGTCCATTGCCCAAATTCTCCCTTCCTTGAAAGGCAAGACTTACCTAGATGTGCCCCAAGTAACATGTGGTCCTGATCATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS-3UTR CAA 90 bp | GTGGCTCAGGAAGAGAGTAGCATTGTTAATATCTGCTTTTCTTGGCACAGATTTGCTCCTGTGTCCACATaGAAGGGAGAGGGTTCCATC | + |
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Preference number: 5 (lower is better) Translates to: VAQEESSIVNICFSWHRFAPVST*KGEGSI Trigger: GATGGAACCCTCTCCCTTCAATGTGGACACAGGAGC...AAATCTGTGCCAAGAAAAGCAGATATTAACAATGCTACTCTCTTCCTGAGCCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS-3UTR CAA 90 bp | GTGGCTCAGGAAGAGAGTAGCATTGTTAATATCTGCTTTTCTTGGCACAGATTTTCAGGATGCTGGGGTTaGGGAAGTCTGAGTCAGTCA | + |
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Preference number: 5 (lower is better) Translates to: VAQEESSIVNICFSWHRFSGCWG*GSLSQS Trigger: TGACTGACTCAGACTTCCCAAACCCCAGCATCCTGA...AAATCTGTGCCAAGAAAAGCAGATATTAACAATGCTACTCTCTTCCTGAGCCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS-3UTR CAA 90 bp | GGTGAGCACCTGCATCATTTATTCCACACAGTGGCTCAGGAAGAGAGTAGCATTAATGGACATGGGGTTTaGGAATTTCCCTTGCTTAAT | + |
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Preference number: 5 (lower is better) Translates to: GEHLHHLFHTVAQEESSINGHGV*EFPLLN Trigger: ATTAAGCAAGGGAAATTCCAAAACCCCATGTCCATT...AATGCTACTCTCTTCCTGAGCCACTGTGTGGAATAAATGATGCAGGTGCTCACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS GCA 90 bp | ATGGGGTTTTGGAATTTCCCTTGCTTAATCTCGTTGAGTATTGTATaGATAGTCTTCTCACAGTCCCACTTCTTGGTAGGTTGCTCAGGT | + |
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Preference number: 5 (lower is better) Translates to: MGFWNFPCLISLSIV*IVFSQSHFLVGCSG Trigger: ACCTGAGCAACCTACCAAGAAGTGGGACTGTGAGAAGACTATGCATACAATACTCAACGAGATTAAGCAAGGGAAATTCCAAAACCCCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS-3UTR CAA 90 bp | CAAAAATTTTATTGCATGAGTCACAATGGTGAGCACCTGCATCATTTATTCCACCCCACAGGAATCTTGTaGTACATACAGGTCAGGGCC | + |
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Preference number: 5 (lower is better) Translates to: QKFYCMSHNGEHLHHLFHPTGIL*YIQVRA Trigger: GGCCCTGACCTGTATGTACAACAAGATTCCTGTGGG...GTGGAATAAATGATGCAGGTGCTCACCATTGTGACTCATGCAATAAAATTTTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS-3UTR CAA 90 bp | TTCCACACAGTGGCTCAGGAAGAGAGTAGCATTGTTAATATCTGCTTTTCTTGGTTGAACATGGAGTTTTaGCGCTGTGCTTCTTCTAGG | + |
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Preference number: 5 (lower is better) Translates to: FHTVAQEESSIVNICFSWLNMEF*RCASSR Trigger: CCTAGAAGAAGCACAGCGCAAAAACTCCATGTTCAA...CCAAGAAAAGCAGATATTAACAATGCTACTCTCTTCCTGAGCCACTGTGTGGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS-3UTR CAA 90 bp | GAGCACCTGCATCATTTATTCCACACAGTGGCTCAGGAAGAGAGTAGCATTGTTATGGTGGTTTCAAATTaGAACATGGAGTTTTTGCGC | + |
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Preference number: 5 (lower is better) Translates to: EHLHHLFHTVAQEESSIVMVVSN*NMEFLR Trigger: GCGCAAAAACTCCATGTTCAAATTTGAAACCACCAT...AACAATGCTACTCTCTTCCTGAGCCACTGTGTGGAATAAATGATGCAGGTGCTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS-3UTR CAA 90 bp | ATCATTTATTCCACACAGTGGCTCAGGAAGAGAGTAGCATTGTTAATATCTGCTGAACCCACAGGAATCTaGTTGTACATACAGGTCAGG | + |
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Preference number: 5 (lower is better) Translates to: IIYSTQWLRKRVALLISAEPTGI*LYIQVR Trigger: CCTGACCTGTATGTACAACAAGATTCCTGTGGGTTC...AGCAGATATTAACAATGCTACTCTCTTCCTGAGCCACTGTGTGGAATAAATGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS-3UTR CAA 90 bp | TTCCACACAGTGGCTCAGGAAGAGAGTAGCATTGTTAATATCTGCTTTTCTTGGGTCTCTGTAGTTTTCTaGAGAACCCACAGGAATCTT | + |
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Preference number: 5 (lower is better) Translates to: FHTVAQEESSIVNICFSWVSVVF*RTHRNL Trigger: AAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGAC...CCAAGAAAAGCAGATATTAACAATGCTACTCTCTTCCTGAGCCACTGTGTGGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS CCA 90 bp | CTAACCTCGATGGTCACATTGAAAAGCAGATCAACCCCTCTCAGCTaGTTGTTTATGGTATATATGACGGTAATGTTAGATACTGAAGTG | + |
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Preference number: 5 (lower is better) Translates to: LTSMVTLKSRSTPLS*LFMVYMTVMLDTEV Trigger: CACTTCAGTATCTAACATTACCGTCATATATACCATAAACAACCAGCTGAGAGGGGTTGATCTGCTTTTCAATGTGACCATCGAGGTTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS-3UTR CAA 90 bp | TCCACACAGTGGCTCAGGAAGAGAGTAGCATTGTTAATATCTGCTTTTCTTGGCGTTTTGGAATTTCCCTaGCTTAATCTCGTTGAGTAT | + |
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Preference number: 5 (lower is better) Translates to: STQWLRKRVALLISAFLGVLEFP*LNLVEY Trigger: ATACTCAACGAGATTAAGCAAGGGAAATTCCAAAAC...GCCAAGAAAAGCAGATATTAACAATGCTACTCTCTTCCTGAGCCACTGTGTGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS GCA 72 bp | CGTTGTAGGCGCCGGCCAGGTTCATGGCAATCAGGATaGTGGGGTTTGGGAAGTCTGAGTCAGTCACCGAGT | + |
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Preference number: 6 (lower is better) Translates to: RCRRRPGSWQSG*WGLGSLSQSPS Trigger: ACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS GCA 72 bp | CATAACGGTGAGGGCAAGCTGCCCACTTGTCAGGTCTaGACTGTCACTGGCCATGAGCTGGTAAGTCAGGAG | + |
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Preference number: 6 (lower is better) Translates to: HNGEGKLPTCQV*TVTGHELVSQE Trigger: CTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAGACCTGACAAGTGGGCAGCTTGCCCTCACCGTTATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS CCA 72 bp | TGTAGGCGCCGGCCAGGTTCATGGCAATCAGGATGCTaGGGTTTGGGAAGTCTGAGTCAGTCACCGAGTTCT | + |
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Preference number: 6 (lower is better) Translates to: CRRRPGSWQSGC*GLGSLSQSPSS Trigger: AGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS TCA 72 bp | GGTTTGGGAAGTCTGAGTCAGTCACCGAGTTCTCCATaGGCGCTTGTAGGCCATCGACCCAGGGTTGCTGAT | + |
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Preference number: 6 (lower is better) Translates to: GLGSLSQSPSSP*ALVGHRPRVAD Trigger: ATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS GCA 72 bp | TGCATAGTCTTCTCACAGTCCCACTTCTTGGTAGGTTaGTCAGGTGTCACGGAGAGAGCCTGCATGGCAAGG | + |
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Preference number: 6 (lower is better) Translates to: CIVFSQSHFLVG*SGVTERACMAR Trigger: CCTTGCCATGCAGGCTCTCTCCGTGACACCTGAGCAACCTACCAAGAAGTGGGACTGTGAGAAGACTATGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS CAA 72 bp | CAGGCCCATAGAAGGCCGAGGATTCAGCACCCGGGCTaGAAGGTGACCAGTTCTCCATTTTCTTCAGTAGAG | + |
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Preference number: 6 (lower is better) Translates to: QAHRRPRIQHPG*KVTSSPFSSVE Trigger: CTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAAGCCCGGGTGCTGAATCCTCGGCCTTCTATGGGCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS CAA 90 bp | TCGCCAAACCAGGCCCATAGAAGGCCGAGGATTCAGCACCCGGGCTaGAAGGTGACCAGTTCTCCATTTTCTTCAGTAGAGTGGACACTT | + |
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Preference number: 6 (lower is better) Translates to: SPNQAHRRPRIQHPG*KVTSSPFSSVEWTL Trigger: AAGTGTCCACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAAGCCCGGGTGCTGAATCCTCGGCCTTCTATGGGCCTGGTTTGGCGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS CAA 72 bp | ATGCATAGTCTTCTCACAGTCCCACTTCTTGGTAGGTaGCTCAGGTGTCACGGAGAGAGCCTGCATGGCAAG | + |
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Preference number: 6 (lower is better) Translates to: MHSLLTVPLLGR*LRCHGESLHGK Trigger: CTTGCCATGCAGGCTCTCTCCGTGACACCTGAGCAACCTACCAAGAAGTGGGACTGTGAGAAGACTATGCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS CAA 90 bp | GAGTATTGTATGCATAGTCTTCTCACAGTCCCACTTCTTGGTAGGTaGCTCAGGTGTCACGGAGAGAGCCTGCATGGCAAGGCCAGTGCT | + |
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Preference number: 6 (lower is better) Translates to: EYCMHSLLTVPLLGR*LRCHGESLHGKASA Trigger: AGCACTGGCCTTGCCATGCAGGCTCTCTCCGTGACACCTGAGCAACCTACCAAGAAGTGGGACTGTGAGAAGACTATGCATACAATACTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS CAA 90 bp | ATCTCGTTGAGTATTGTATGCATAGTCTTCTCACAGTCCCACTTCTaGGTAGGTTGCTCAGGTGTCACGGAGAGAGCCTGCATGGCAAGG | + |
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Preference number: 6 (lower is better) Translates to: ISLSIVCIVFSQSHF*VGCSGVTERACMAR Trigger: CCTTGCCATGCAGGCTCTCTCCGTGACACCTGAGCAACCTACCAAGAAGTGGGACTGTGAGAAGACTATGCATACAATACTCAACGAGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS CAA 72 bp | AGTATTGTATGCATAGTCTTCTCACAGTCCCACTTCTaGGTAGGTTGCTCAGGTGTCACGGAGAGAGCCTGC | + |
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Preference number: 6 (lower is better) Translates to: SIVCIVFSQSHF*VGCSGVTERAC Trigger: GCAGGCTCTCTCCGTGACACCTGAGCAACCTACCAAGAAGTGGGACTGTGAGAAGACTATGCATACAATACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS CAA 90 bp | TGGGCAATGGACATGGGGTTTTGGAATTTCCCTTGCTTAATCTCGTaGAGTATTGTATGCATAGTCTTCTCACAGTCCCACTTCTTGGTA | + |
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Preference number: 6 (lower is better) Translates to: WAMDMGFWNFPCLIS*SIVCIVFSQSHFLV Trigger: TACCAAGAAGTGGGACTGTGAGAAGACTATGCATACAATACTCAACGAGATTAAGCAAGGGAAATTCCAAAACCCCATGTCCATTGCCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS CAA 72 bp | GACATGGGGTTTTGGAATTTCCCTTGCTTAATCTCGTaGAGTATTGTATGCATAGTCTTCTCACAGTCCCAC | + |
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Preference number: 6 (lower is better) Translates to: DMGFWNFPCLIS*SIVCIVFSQSH Trigger: GTGGGACTGTGAGAAGACTATGCATACAATACTCAACGAGATTAAGCAAGGGAAATTCCAAAACCCCATGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS CAA 72 bp | GATGTCATGGTGGTTTCAAATTTGAACATGGAGTTTTaGCGCTGTGCTTCTTCTAGGACAGCAAGTAGCACA | + |
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Preference number: 6 (lower is better) Translates to: DVMVVSNLNMEF*RCASSRTASST Trigger: TGTGCTACTTGCTGTCCTAGAAGAAGCACAGCGCAAAAACTCCATGTTCAAATTTGAAACCACCATGACATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS GCA 72 bp | TGGAATTTCCCTTGCTTAATCTCGTTGAGTATTGTATaGATAGTCTTCTCACAGTCCCACTTCTTGGTAGGT | + |
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Preference number: 6 (lower is better) Translates to: WNFPCLISLSIV*IVFSQSHFLVG Trigger: ACCTACCAAGAAGTGGGACTGTGAGAAGACTATGCATACAATACTCAACGAGATTAAGCAAGGGAAATTCCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS CCA 72 bp | ATGGTCACATTGAAAAGCAGATCAACCCCTCTCAGCTaGTTGTTTATGGTATATATGACGGTAATGTTAGAT | + |
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Preference number: 6 (lower is better) Translates to: MVTLKSRSTPLS*LFMVYMTVMLD Trigger: ATCTAACATTACCGTCATATATACCATAAACAACCAGCTGAGAGGGGTTGATCTGCTTTTCAATGTGACCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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| CDS CAA 72 bp | AATTTGGGCAATGGACATGGGGTTTTGGAATTTCCCTaGCTTAATCTCGTTGAGTATTGTATGCATAGTCTT | + |
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Preference number: 6 (lower is better) Translates to: NLGNGHGVLEFP*LNLVEYCMHSL Trigger: AAGACTATGCATACAATACTCAACGAGATTAAGCAAGGGAAATTCCAAAACCCCATGTCCATTGCCCAAATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025585.4 |
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