RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CBFA2T2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038533

Ensembl transcript IDs: ENSMUST00000045270.15, ENSMUST00000099178.10, ENSMUST00000109724.2, ENSMUST00000109725.8, ENSMUST00000137526.2, ENSMUST00000155202.2

Found 483 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CAAAGCGGTGAGCCAGGAATCACTTGTAGCTCCAGCTCCTACTGCTaGTGCTCCTGCCTAGGGAGGAGTTGGAGAACTGCAGAAAGGAAC +
Preference number: 1 (lower is better)
Translates to: QSGEPGITCSSSSYC*CSCLGRSWRTAERN
Trigger: GTTCCTTTCTGCAGTTCTCCAACTCCTCCCTAGGCAGGAGCAGCAGCAGTAGGAGCTGGAGCTACAAGTGATTCCTGGCTCACCGCTTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR CCA 90 bp TGCAGCTTCTTCCTGGGAACCACAAGGCAGGGACTGGGCTGTCCCTaGCAGACACCAGCTGCACATGCCCTTTTTGGTATAAGCATTGAC +
Preference number: 1 (lower is better)
Translates to: CSFFLGTTRQGLGCP*QTPAAHALFGISID
Trigger: GTCAATGCTTATACCAAAAAGGGCATGTGCAGCTGGTGTCTGCCAGGGACAGCCCAGTCCCTGCCTTGTGGTTCCCAGGAAGAAGCTGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR TCA 90 bp CAATCAGTGTCACTCGAGGGTGGATATGGGGCTCAAGGAACTGTTTaGAGACAGGGGAAGGAAGGGCCTCCTCCTAAGCCTGCTACCAGT +
Preference number: 1 (lower is better)
Translates to: QSVSLEGGYGAQGTV*RQGKEGPPPKPATS
Trigger: ACTGGTAGCAGGCTTAGGAGGAGGCCCTTCCTTCCCCTGTCTTCAAACAGTTCCTTGAGCCCCATATCCACCCTCGAGTGACACTGATTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR GCA 90 bp AAACAAAGCGGTGAGCCAGGAATCACTTGTAGCTCCAGCTCCTACTaGTGCTGCTCCTGCCTAGGGAGGAGTTGGAGAACTGCAGAAAGG +
Preference number: 1 (lower is better)
Translates to: KQSGEPGITCSSSSY*CCSCLGRSWRTAER
Trigger: CCTTTCTGCAGTTCTCCAACTCCTCCCTAGGCAGGAGCAGCAGCAGTAGGAGCTGGAGCTACAAGTGATTCCTGGCTCACCGCTTTGTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR GCA 90 bp AGGACACGTGGCAAATCCCAGAGAAGCTGTGGAGTGCCTCTTGGATaGTTCCTGCCAACTTCACTTCTTGCTGACGACCCAACAGCTACT +
Preference number: 1 (lower is better)
Translates to: RTRGKSQRSCGVPLG*FLPTSLLADDPTAT
Trigger: AGTAGCTGTTGGGTCGTCAGCAAGAAGTGAAGTTGGCAGGAAGCATCCAAGAGGCACTCCACAGCTTCTCTGGGATTTGCCACGTGTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR CCA 90 bp CCAGCTGCACATGCCCTTTTTGGTATAAGCATTGACAGTTTACACTaGGCAGCTGGAGGCCTGATAAGACGGTGTCTGAGCGGGAAGTGC +
Preference number: 1 (lower is better)
Translates to: PAAHALFGISIDSLH*AAGGLIRRCLSGKC
Trigger: GCACTTCCCGCTCAGACACCGTCTTATCAGGCCTCCAGCTGCCCAGTGTAAACTGTCAATGCTTATACCAAAAAGGGCATGTGCAGCTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR CCA 90 bp ATCCAAGTCTCTTTTAGGCCAATCAGTGTCACTCGAGGGTGGATATaGGGCTCAAGGAACTGTTTGAAGACAGGGGAAGGAAGGGCCTCC +
Preference number: 1 (lower is better)
Translates to: IQVSFRPISVTRGWI*GSRNCLKTGEGRAS
Trigger: GGAGGCCCTTCCTTCCCCTGTCTTCAAACAGTTCCTTGAGCCCCATATCCACCCTCGAGTGACACTGATTGGCCTAAAAGAGACTTGGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR GCA 90 bp GTGGCAAATCCCAGAGAAGCTGTGGAGTGCCTCTTGGATGCTTCCTaGCAACTTCACTTCTTGCTGACGACCCAACAGCTACTTGTTCTA +
Preference number: 1 (lower is better)
Translates to: VANPREAVECLLDAS*QLHFLLTTQQLLVL
Trigger: TAGAACAAGTAGCTGTTGGGTCGTCAGCAAGAAGTGAAGTTGGCAGGAAGCATCCAAGAGGCACTCCACAGCTTCTCTGGGATTTGCCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR GCA 90 bp AAGGCATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTaGTGGGAATTGAACTCGGGACCTTTGGAAGAGCAGCCAGTGCTC +
Preference number: 1 (lower is better)
Translates to: KASDLITDGCEPPCG*WELNSGPLEEQPVL
Trigger: GAGCACTGGCTGCTCTTCCAAAGGTCCCGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATCTGATGCCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR CCA 90 bp CTGCTAAGCAGCTGCTGGATCAAGGATCTTCCACAGCTGGCCATCTaGTCCACAATGGCCAGTTCAGTTCCTTCTGGCTTTTCTCACATT +
Preference number: 1 (lower is better)
Translates to: LLSSCWIKDLPQLAI*STMASSVPSGFSHI
Trigger: AATGTGAGAAAAGCCAGAAGGAACTGAACTGGCCATTGTGGACCAGATGGCCAGCTGTGGAAGATCCTTGATCCAGCAGCTGCTTAGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR GCA 90 bp AACCAGGTGCGAATAATCCCATCAGGGTTAGGAGCACTGCTTAGGTaGCAAACAGAACCTACTCACAAGACATCCCCAAGGATCCAGACA +
Preference number: 1 (lower is better)
Translates to: NQVRIIPSGLGALLR*QTEPTHKTSPRIQT
Trigger: TGTCTGGATCCTTGGGGATGTCTTGTGAGTAGGTTCTGTTTGGCACCTAAGCAGTGCTCCTAACCCTGATGGGATTATTCGCACCTGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR CCA 90 bp TGCATGAGCCAATCTGAAGCTGCAGGGCCCTTCAATGAGTCTCTGTaGGATAAGTCTCCTGTAACTCAGGCTTGCTATGCAGCTATGGAT +
Preference number: 1 (lower is better)
Translates to: CMSQSEAAGPFNESL*DKSPVTQACYAAMD
Trigger: ATCCATAGCTGCATAGCAAGCCTGAGTTACAGGAGACTTATCCCACAGAGACTCATTGAAGGGCCCTGCAGCTTCAGATTGGCTCATGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR CCA 90 bp GCTGCTGGATCAAGGATCTTCCACAGCTGGCCATCTGGTCCACAATaGCCAGTTCAGTTCCTTCTGGCTTTTCTCACATTTGGTTCAAAC +
Preference number: 1 (lower is better)
Translates to: AAGSRIFHSWPSGPQ*PVQFLLAFLTFGSN
Trigger: GTTTGAACCAAATGTGAGAAAAGCCAGAAGGAACTGAACTGGCCATTGTGGACCAGATGGCCAGCTGTGGAAGATCCTTGATCCAGCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR TCA 90 bp AAGCCATGGAGGAGGCAGCTCAAGCTACTTCCTGTGTGCAGAGAATaGTACATTAGTTCTTCCAAGGACACGTGGCAAATCCCAGAGAAG +
Preference number: 1 (lower is better)
Translates to: KPWRRQLKLLPVCRE*YISSSKDTWQIPEK
Trigger: CTTCTCTGGGATTTGCCACGTGTCCTTGGAAGAACTAATGTATCATTCTCTGCACACAGGAAGTAGCTTGAGCTGCCTCCTCCATGGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR GCA 90 bp GAAGGCCTTATTATCAAACAGCCCTTTAATCATTCACTGAATTGTTaGAGCTTCTTCCTGGGAACCACAAGGCAGGGACTGGGCTGTCCC +
Preference number: 1 (lower is better)
Translates to: EGLIIKQPFNHSLNC*SFFLGTTRQGLGCP
Trigger: GGGACAGCCCAGTCCCTGCCTTGTGGTTCCCAGGAAGAAGCTGCAACAATTCAGTGAATGATTAAAGGGCTGTTTGATAATAAGGCCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR GCA 90 bp GATAATAGAGAGAGGGTCCTGCCTCATCCCCTAAAGAAGGAATTCTaGAGCACAGCCAAAACCACCAATGCACTCAGGCCATCCTTTGTT +
Preference number: 1 (lower is better)
Translates to: DNRERVLPHPLKKEF*STAKTTNALRPSFV
Trigger: AACAAAGGATGGCCTGAGTGCATTGGTGGTTTTGGCTGTGCTGCAGAATTCCTTCTTTAGGGGATGAGGCAGGACCCTCTCTCTATTATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR CCA 90 bp ACAAAAATCACAGGATTAGCTGTGGGCTGTAATCTCACTCAGCAGTaGCAGGCTGAGGCAAGTTTGTGTCAGCGCTACAGAGTGAGAAAC +
Preference number: 1 (lower is better)
Translates to: TKITGLAVGCNLTQQ*QAEASLCQRYRVRN
Trigger: GTTTCTCACTCTGTAGCGCTGACACAAACTTGCCTCAGCCTGCCACTGCTGAGTGAGATTACAGCCCACAGCTAATCCTGTGATTTTTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR GCA 90 bp TGCCAAACAGAACCTACTCACAAGACATCCCCAAGGATCCAGACATaGAGTCCCAGAGAGAAGGACACATACAACAAGGCGACTGTTTTA +
Preference number: 1 (lower is better)
Translates to: CQTEPTHKTSPRIQT*SPREKDTYNKATVL
Trigger: TAAAACAGTCGCCTTGTTGTATGTGTCCTTCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGAGTAGGTTCTGTTTGGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR GCA 90 bp TTCCTACTGAGTCAAATGACAAAGCACAGAAAAACCAGACTCAAATaGATCCTGCGGGTGGCTTCACATTCATCACCCGCCTCTGCAAAC +
Preference number: 1 (lower is better)
Translates to: FLLSQMTKHRKTRLK*ILRVASHSSPASAN
Trigger: GTTTGCAGAGGCGGGTGATGAATGTGAAGCCACCCGCAGGATGCATTTGAGTCTGGTTTTTCTGTGCTTTGTCATTTGACTCAGTAGGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR GCA 90 bp AGCATCTTAACAGCTCTGAGCAGCTCAGGAGAGAGTCCTGAGTACTaGTTTTGTGCTATCCAAGTCTCTTTTAGGCCAATCAGTGTCACT +
Preference number: 1 (lower is better)
Translates to: SILTALSSSGESPEY*FCAIQVSFRPISVT
Trigger: AGTGACACTGATTGGCCTAAAAGAGACTTGGATAGCACAAAAGCAGTACTCAGGACTCTCTCCTGAGCTGCTCAGAGCTGTTAAGATGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR GCA 90 bp CCCTTCAATGAGTCTCTGTGGGATAAGTCTCCTGTAACTCAGGCTTaGTATGCAGCTATGGATAACCTTAAACTTCTGGTCCTCCTGCTT +
Preference number: 1 (lower is better)
Translates to: PFNESLWDKSPVTQA*YAAMDNLKLLVLLL
Trigger: AAGCAGGAGGACCAGAAGTTTAAGGTTATCCATAGCTGCATAGCAAGCCTGAGTTACAGGAGACTTATCCCACAGAGACTCATTGAAGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR GCA 90 bp ACATACATAGTACTCTCTTCTTTCTCTCTTACTGATCTTTTGTACTaGTGGTCTGAAGCCAGGCCACTGCTCAGGAGGGCAAGTGTCATC +
Preference number: 1 (lower is better)
Translates to: TYIVLSSFSLTDLLY*WSEARPLLRRASVI
Trigger: GATGACACTTGCCCTCCTGAGCAGTGGCCTGGCTTCAGACCAGCAGTACAAAAGATCAGTAAGAGAGAAAGAAGAGAGTACTATGTATGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR CCA 90 bp TACATAGTACTCTCTTCTTTCTCTCTTACTGATCTTTTGTACTGCTaGTCTGAAGCCAGGCCACTGCTCAGGAGGGCAAGTGTCATCGTT +
Preference number: 1 (lower is better)
Translates to: YIVLSSFSLTDLLYC*SEARPLLRRASVIV
Trigger: AACGATGACACTTGCCCTCCTGAGCAGTGGCCTGGCTTCAGACCAGCAGTACAAAAGATCAGTAAGAGAGAAAGAAGAGAGTACTATGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR CCA 90 bp TCAGCTTCTGGGGAAAGTGATGGAACATTTTGGGTGGGATATCTCTaGCTTCCTGGATGTACCCGCTCATCTCTGATGCTTCAATATGAA +
Preference number: 1 (lower is better)
Translates to: SASGESDGTFWVGYL*LPGCTRSSLMLQYE
Trigger: TTCATATTGAAGCATCAGAGATGAGCGGGTACATCCAGGAAGCCAGAGATATCCCACCCAAAATGTTCCATCACTTTCCCCAGAAGCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR CCA 90 bp GCAGAGGCTCTGCATTTCCAAGGTGATCCACGGAATATTTTAGTTTaGCCAACATGCTTAGAGAAAAGACTAGCACAATGGCTCCATCCT +
Preference number: 1 (lower is better)
Translates to: AEALHFQGDPRNILV*PTCLEKRLAQWLHP
Trigger: AGGATGGAGCCATTGTGCTAGTCTTTTCTCTAAGCATGTTGGCCAAACTAAAATATTCCGTGGATCACCTTGGAAATGCAGAGCCTCTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR CCA 90 bp TTGGTTTTCTGTATGGATGGAGCCTTTGTAGCCTCATTAGGAACTTaGAAAGCCACAGGAGTGGAACGAAGGCCTTATTATCAAACAGCC +
Preference number: 1 (lower is better)
Translates to: LVFCMDGAFVASLGT*KATGVERRPYYQTA
Trigger: GGCTGTTTGATAATAAGGCCTTCGTTCCACTCCTGTGGCTTTCCAAGTTCCTAATGAGGCTACAAAGGCTCCATCCATACAGAAAACCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR GCA 90 bp AAGCTAGCTTCAACAAGTCTTCATTTGCTGGAGCGAGGACTGGTGTaGAGAACTCCCAGTTTGGCTACTTTTGTTATTTACTTCCTGAAA +
Preference number: 1 (lower is better)
Translates to: KLASTSLHLLERGLV*RTPSLATFVIYFLK
Trigger: TTTCAGGAAGTAAATAACAAAAGTAGCCAAACTGGGAGTTCTGCACACCAGTCCTCGCTCCAGCAAATGAAGACTTGTTGAAGCTAGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR GCA 90 bp AACCCAGAAAATGAACAACAAAACCAAGTCCAACAGTATCAAACCTaGTTGATGTATGCCTCTGTGATAATAGAGAGAGGGTCCTGCCTC +
Preference number: 1 (lower is better)
Translates to: NPENEQQNQVQQYQT*LMYASVIIERGSCL
Trigger: GAGGCAGGACCCTCTCTCTATTATCACAGAGGCATACATCAAGCAGGTTTGATACTGTTGGACTTGGTTTTGTTGTTCATTTTCTGGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR CCA 90 bp AAGAAATTCACTCTCCTTGATGAACATTTGGGAACTTTAAGTGGGTaGGTGGAAAAAGAGTGTGATCACAGATGGCCTGTCATTCAGCTG +
Preference number: 1 (lower is better)
Translates to: KKFTLLDEHLGTLSG*VEKECDHRWPVIQL
Trigger: CAGCTGAATGACAGGCCATCTGTGATCACACTCTTTTTCCACCCACCCACTTAAAGTTCCCAAATGTTCATCAAGGAGAGTGAATTTCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR CCA 90 bp AAAGTTCAGATGTCACCTATTTTTCTGGCTACTAATCTTCTCCATTaGAGCCTAAATTTCTCCTCCTCAAGGCAGGGTACAAAAGCTCTG +
Preference number: 1 (lower is better)
Translates to: KVQMSPIFLATNLLH*SLNFSSSRQGTKAL
Trigger: CAGAGCTTTTGTACCCTGCCTTGAGGAGGAGAAATTTAGGCTCCAATGGAGAAGATTAGTAGCCAGAAAAATAGGTGACATCTGAACTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR CCA 90 bp AATATTTTAGTTTGGCCAACATGCTTAGAGAAAAGACTAGCACAATaGCTCCATCCTCTCTCAGACCGATCCATGCGATGGAGATTATTT +
Preference number: 1 (lower is better)
Translates to: NILVWPTCLEKRLAQ*LHPLSDRSMRWRLF
Trigger: AAATAATCTCCATCGCATGGATCGGTCTGAGAGAGGATGGAGCCATTGTGCTAGTCTTTTCTCTAAGCATGTTGGCCAAACTAAAATATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR TCA 90 bp CCTTTGGAAGAGCAGCCAGTGCTCTTACCCGCTGAGTCATGTCTCCAGCCCCGGTCAGCAGTGGCAGGCTaGGGCAAGTTTGTGTCAGCG +
Preference number: 2 (lower is better)
Translates to: PLEEQPVLLPAESCLQPRSAVAG*GKFVSA
Trigger: CGCTGACACAAACTTGCCTCAGCCTGCCACTGCTGA...CCGGGGCTGGAGACATGACTCAGCGGGTAAGAGCACTGGCTGCTCTTCCAAAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR-3UTR GCA 90 bp TCCTGCGGGTGGCTTCACATTCATCACCCGCCTCTGCAAACCATGCTTGCAGGAAAGCCACTCACAGCCTaGGCCCTCACCTCCACCTCC +
Preference number: 2 (lower is better)
Translates to: SCGWLHIHHPPLQTMLAGKPLTA*ALTSTS
Trigger: GGAGGTGGAGGTGAGGGCGCAGGCTGTGAGTGGCTT...TCCTGCAAGCATGGTTTGCAGAGGCGGGTGATGAATGTGAAGCCACCCGCAGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR GCA 90 bp CCTTTGGAAGAGCAGCCAGTGCTCTTACCCGCTGAGTCATGTCTCCAGCCCCGGCTGAAGCCAGGCCACTaGTCAGGAGGGCAAGTGTCA +
Preference number: 2 (lower is better)
Translates to: PLEEQPVLLPAESCLQPRLKPGH*SGGQVS
Trigger: TGACACTTGCCCTCCTGAGCAGTGGCCTGGCTTCAG...CCGGGGCTGGAGACATGACTCAGCGGGTAAGAGCACTGGCTGCTCTTCCAAAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR-3UTR CCA 90 bp TCCTGCGGGTGGCTTCACATTCATCACCCGCCTCTGCAAACCATGCTTGCAGGAGGACTGGGCTGTCCCTaGCAGACACCAGCTGCACAT +
Preference number: 2 (lower is better)
Translates to: SCGWLHIHHPPLQTMLAGGLGCP*QTPAAH
Trigger: ATGTGCAGCTGGTGTCTGCCAGGGACAGCCCAGTCC...TCCTGCAAGCATGGTTTGCAGAGGCGGGTGATGAATGTGAAGCCACCCGCAGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR CCA 90 bp CCTTTGGAAGAGCAGCCAGTGCTCTTACCCGCTGAGTCATGTCTCCAGCCCCGGAGGGTACAAAAGCTCTaGCCTGTGTGCACCCCCTAC +
Preference number: 2 (lower is better)
Translates to: PLEEQPVLLPAESCLQPRRVQKL*PVCTPY
Trigger: GTAGGGGGTGCACACAGGCCAGAGCTTTTGTACCCT...CCGGGGCTGGAGACATGACTCAGCGGGTAAGAGCACTGGCTGCTCTTCCAAAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR-3UTR TCA 90 bp CCCACTAGACTGATGGGATGGGACCAGGGAGGCCAGGCTGTACTAAGCTGTCTGAGCTGGTGTATACACTaGGAAGGGGCTGGTTATGCC +
Preference number: 2 (lower is better)
Translates to: PTRLMGWDQGGQAVLSCLSWCIH*EGAGYA
Trigger: GGCATAACCAGCCCCTTCTCAGTGTATACACCAGCT...CAGACAGCTTAGTACAGCCTGGCCTCCCTGGTCCCATCCCATCAGTCTAGTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR GCA 90 bp GGATGGGACCAGGGAGGCCAGGCTGTACTAAGCTGTCTGGCAAACAGTGGGTCTAGAGAAGCTGTGGAGTaGCTCTTGGATGCTTCCTGC +
Preference number: 2 (lower is better)
Translates to: GWDQGGQAVLSCLANSGSREAVE*LLDASC
Trigger: GCAGGAAGCATCCAAGAGGCACTCCACAGCTTCTCT...AGACCCACTGTTTGCCAGACAGCTTAGTACAGCCTGGCCTCCCTGGTCCCATCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR CCA 90 bp CCCACTAGACTGATGGGATGGGACCAGGGAGGCCAGGCTGTACTAAGCTGTCTGACCTCAGGAAAGCCATaGAGGAGGCAGCTCAAGCTA +
Preference number: 2 (lower is better)
Translates to: PTRLMGWDQGGQAVLSCLTSGKP*RRQLKL
Trigger: TAGCTTGAGCTGCCTCCTCCATGGCTTTCCTGAGGT...CAGACAGCTTAGTACAGCCTGGCCTCCCTGGTCCCATCCCATCAGTCTAGTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR CCA 90 bp TCCTGCGGGTGGCTTCACATTCATCACCCGCCTCTGCAAACCATGCTTGCAGGAGTTGCAGCTTCTTCCTaGGAACCACAAGGCAGGGAC +
Preference number: 2 (lower is better)
Translates to: SCGWLHIHHPPLQTMLAGVAASS*EPQGRD
Trigger: GTCCCTGCCTTGTGGTTCCCAGGAAGAAGCTGCAAC...TCCTGCAAGCATGGTTTGCAGAGGCGGGTGATGAATGTGAAGCCACCCGCAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR CAA 90 bp GGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCGGGACCTTaGGAAGAGCAGCCAGTGCTCTTACCCGCTGAGTCATGTCTCCAG +
Preference number: 2 (lower is better)
Translates to: GCEPPCGCWELNSGP*EEQPVLLPAESCLQ
Trigger: CTGGAGACATGACTCAGCGGGTAAGAGCACTGGCTGCTCTTCCAAAGGTCCCGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR-3UTR GCA 90 bp TCCTGCGGGTGGCTTCACATTCATCACCCGCCTCTGCAAACCATGCTTGCAGGACAGTGGCAGAGGCTCTaGATTTCCAAGGTGATCCAC +
Preference number: 2 (lower is better)
Translates to: SCGWLHIHHPPLQTMLAGQWQRL*ISKVIH
Trigger: GTGGATCACCTTGGAAATGCAGAGCCTCTGCCACTG...TCCTGCAAGCATGGTTTGCAGAGGCGGGTGATGAATGTGAAGCCACCCGCAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR CCA 90 bp GGGTGGATATGGGGCTCAAGGAACTGTTTGAAGACAGGGGAAGGAAGGGCCTCCACCTCAGGAAAGCCATaGAGGAGGCAGCTCAAGCTA +
Preference number: 2 (lower is better)
Translates to: GWIWGSRNCLKTGEGRASTSGKP*RRQLKL
Trigger: TAGCTTGAGCTGCCTCCTCCATGGCTTTCCTGAGGT...GGAGGCCCTTCCTTCCCCTGTCTTCAAACAGTTCCTTGAGCCCCATATCCACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR CCA 90 bp TCCTGCGGGTGGCTTCACATTCATCACCCGCCTCTGCAAACCATGCTTGCAGGAACCTCAGGAAAGCCATaGAGGAGGCAGCTCAAGCTA +
Preference number: 2 (lower is better)
Translates to: SCGWLHIHHPPLQTMLAGTSGKP*RRQLKL
Trigger: TAGCTTGAGCTGCCTCCTCCATGGCTTTCCTGAGGT...TCCTGCAAGCATGGTTTGCAGAGGCGGGTGATGAATGTGAAGCCACCCGCAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR TCA 90 bp GGACCTTTGGAAGAGCAGCCAGTGCTCTTACCCGCTGAGTCATGTCTCCAGCCCGGTGGAAAAAGAGTGTaGTCACAGATGGCCTGTCAT +
Preference number: 2 (lower is better)
Translates to: GPLEEQPVLLPAESCLQPGGKRV*SQMACH
Trigger: ATGACAGGCCATCTGTGATCACACTCTTTTTCCACC...GGGCTGGAGACATGACTCAGCGGGTAAGAGCACTGGCTGCTCTTCCAAAGGTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR-3UTR GCA 90 bp TCCTGCGGGTGGCTTCACATTCATCACCCGCCTCTGCAAACCATGCTTGCAGGACTGGCAGACACCAGCTaGACATGCCCTTTTTGGTAT +
Preference number: 2 (lower is better)
Translates to: SCGWLHIHHPPLQTMLAGLADTS*TCPFWY
Trigger: ATACCAAAAAGGGCATGTGCAGCTGGTGTCTGCCAG...TCCTGCAAGCATGGTTTGCAGAGGCGGGTGATGAATGTGAAGCCACCCGCAGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR CCA 90 bp GGATGGGACCAGGGAGGCCAGGCTGTACTAAGCTGTCTGGCAAACAGTGGGTCTTTCAGGCCTCTACTGTaGACAGTGTGGGACACTATT +
Preference number: 2 (lower is better)
Translates to: GWDQGGQAVLSCLANSGSFRPLL*TVWDTI
Trigger: AATAGTGTCCCACACTGTCCACAGTAGAGGCCTGAA...AGACCCACTGTTTGCCAGACAGCTTAGTACAGCCTGGCCTCCCTGGTCCCATCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR TCA 90 bp CCCACTAGACTGATGGGATGGGACCAGGGAGGCCAGGCTGTACTAAGCTGTCTGCAGGATCAAAGGCAATaGCTTATCCCAATTGACTGC +
Preference number: 2 (lower is better)
Translates to: PTRLMGWDQGGQAVLSCLQDQRQ*LIPIDC
Trigger: GCAGTCAATTGGGATAAGTCATTGCCTTTGATCCTG...CAGACAGCTTAGTACAGCCTGGCCTCCCTGGTCCCATCCCATCAGTCTAGTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR GCA 90 bp AACCCACAATCCTGTCTGCAGTTTTCAGAACGAAGGCCATCTGCTCACTCCTTATCCAGCTCCTACTGCTaGTGCTCCTGCCTAGGGAGG +
Preference number: 2 (lower is better)
Translates to: NPQSCLQFSERRPSAHSLSSSYC*CSCLGR
Trigger: CCTCCCTAGGCAGGAGCAGCAGCAGTAGGAGCTGGA...TAAGGAGTGAGCAGATGGCCTTCGTTCTGAAAACTGCAGACAGGATTGTGGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR CCA 90 bp CAGAACCTACTCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGAAAGCATGCTCCCATGTaGAGGGGTCATCAGGACAGG +
Preference number: 2 (lower is better)
Translates to: QNLLTRHPQGSRHAVPERKHAPM*RGHQDR
Trigger: CCTGTCCTGATGACCCCTCCACATGGGAGCATGCTT...TCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGAGTAGGTTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR CCA 90 bp GGATGGGACCAGGGAGGCCAGGCTGTACTAAGCTGTCTGGCAAACAGTGGGTCTAAAAGACTAGCACAATaGCTCCATCCTCTCTCAGAC +
Preference number: 2 (lower is better)
Translates to: GWDQGGQAVLSCLANSGSKRLAQ*LHPLSD
Trigger: GTCTGAGAGAGGATGGAGCCATTGTGCTAGTCTTTT...AGACCCACTGTTTGCCAGACAGCTTAGTACAGCCTGGCCTCCCTGGTCCCATCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR CCA 90 bp CCTTTGGAAGAGCAGCCAGTGCTCTTACCCGCTGAGTCATGTCTCCAGCCCCGGTTTGGGAACTTTAAGTaGGTGGGTGGAAAAAGAGTG +
Preference number: 2 (lower is better)
Translates to: PLEEQPVLLPAESCLQPRFGNFK*VGGKRV
Trigger: CACTCTTTTTCCACCCACCCACTTAAAGTTCCCAAA...CCGGGGCTGGAGACATGACTCAGCGGGTAAGAGCACTGGCTGCTCTTCCAAAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR-3UTR TCA 90 bp CAGAACCTACTCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGAGCTCAAGGAACTGTTTaGAGACAGGGGAAGGAAGGG +
Preference number: 2 (lower is better)
Translates to: QNLLTRHPQGSRHAVPERAQGTV*RQGKEG
Trigger: CCCTTCCTTCCCCTGTCTTCAAACAGTTCCTTGAGC...TCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGAGTAGGTTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR GCA 90 bp GAGGAACCTCAGGAAAGCCATGGAGGAGGCAGCTCAAGCTACTTCCTGTGTGCACTCTTGGATGCTTCCTaGCAACTTCACTTCTTGCTG +
Preference number: 2 (lower is better)
Translates to: EEPQESHGGGSSSYFLCALLDAS*QLHFLL
Trigger: CAGCAAGAAGTGAAGTTGGCAGGAAGCATCCAAGAG...TGCACACAGGAAGTAGCTTGAGCTGCCTCCTCCATGGCTTTCCTGAGGTTCCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR GCA 90 bp GTGCCAAACAGAACCTACTCACAAGACATCCCCAAGGATCCAGACATGCAGTCCAGAGAAGCTGTGGAGTaGCTCTTGGATGCTTCCTGC +
Preference number: 2 (lower is better)
Translates to: VPNRTYSQDIPKDPDMQSREAVE*LLDASC
Trigger: GCAGGAAGCATCCAAGAGGCACTCCACAGCTTCTCT...GGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGAGTAGGTTCTGTTTGGCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR GCA 90 bp TCCTGCGGGTGGCTTCACATTCATCACCCGCCTCTGCAAACCATGCTTGCAGGATCCTCAAATAGTTACTaGAGAGGCCAGACTTGTGAG +
Preference number: 2 (lower is better)
Translates to: SCGWLHIHHPPLQTMLAGSSNSY*RGQTCE
Trigger: CTCACAAGTCTGGCCTCTGCAGTAACTATTTGAGGA...TCCTGCAAGCATGGTTTGCAGAGGCGGGTGATGAATGTGAAGCCACCCGCAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR CCA 90 bp ACCTGGGTAGGACACAGAAGCAAAGCAGTCCCCAACAGCACTATAGAAACTCAGAAGCATGCTCCCATGTaGAGGGGTCATCAGGACAGG +
Preference number: 2 (lower is better)
Translates to: TWVGHRSKAVPNSTIETQKHAPM*RGHQDR
Trigger: CCTGTCCTGATGACCCCTCCACATGGGAGCATGCTT...CTGAGTTTCTATAGTGCTGTTGGGGACTGCTTTGCTTCTGTGTCCTACCCAGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR CCA 90 bp GGATGGGACCAGGGAGGCCAGGCTGTACTAAGCTGTCTGGCAAACAGTGGGTCTAATAAACCTATGAGGTaGTGTCAAAACCAGGTGCGA +
Preference number: 2 (lower is better)
Translates to: GWDQGGQAVLSCLANSGSNKPMR*CQNQVR
Trigger: TCGCACCTGGTTTTGACACCACCTCATAGGTTTATT...AGACCCACTGTTTGCCAGACAGCTTAGTACAGCCTGGCCTCCCTGGTCCCATCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR CCA 90 bp TCCTGCGGGTGGCTTCACATTCATCACCCGCCTCTGCAAACCATGCTTGCAGGAGTGTGTAGACAAACCTaGGTAGGACACAGAAGCAAA +
Preference number: 2 (lower is better)
Translates to: SCGWLHIHHPPLQTMLAGVCRQT*VGHRSK
Trigger: TTTGCTTCTGTGTCCTACCCAGGTTTGTCTACACAC...TCCTGCAAGCATGGTTTGCAGAGGCGGGTGATGAATGTGAAGCCACCCGCAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR CAA 90 bp GCTGTGGGCTGTAATCTCACTCAGCAGTGGCAGGCTGAGGCAAGTTaGTGTCAGCGCTACAGAGTGAGAAACATCTTGAAAACCAACCCA +
Preference number: 2 (lower is better)
Translates to: AVGCNLTQQWQAEAS*CQRYRVRNILKTNP
Trigger: TGGGTTGGTTTTCAAGATGTTTCTCACTCTGTAGCGCTGACACAAACTTGCCTCAGCCTGCCACTGCTGAGTGAGATTACAGCCCACAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR-3UTR TCA 90 bp TCCTGCGGGTGGCTTCACATTCATCACCCGCCTCTGCAAACCATGCTTGCAGGAAGAATGACCAAGCCCTaGCTACTTTTCTTCCTCAAA +
Preference number: 2 (lower is better)
Translates to: SCGWLHIHHPPLQTMLAGRMTKP*LLFFLK
Trigger: TTTGAGGAAGAAAAGTAGTCAGGGCTTGGTCATTCT...TCCTGCAAGCATGGTTTGCAGAGGCGGGTGATGAATGTGAAGCCACCCGCAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR GCA 90 bp ACCTGGGTAGGACACAGAAGCAAAGCAGTCCCCAACAGCACTATAGAAACTCAGCAGTGGCAGAGGCTCTaGATTTCCAAGGTGATCCAC +
Preference number: 2 (lower is better)
Translates to: TWVGHRSKAVPNSTIETQQWQRL*ISKVIH
Trigger: GTGGATCACCTTGGAAATGCAGAGCCTCTGCCACTG...CTGAGTTTCTATAGTGCTGTTGGGGACTGCTTTGCTTCTGTGTCCTACCCAGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR CCA 90 bp AACCCACAATCCTGTCTGCAGTTTTCAGAACGAAGGCCATCTGCTCACTCCTTAAAGCATGCTCCCATGTaGAGGGGTCATCAGGACAGG +
Preference number: 2 (lower is better)
Translates to: NPQSCLQFSERRPSAHSLKHAPM*RGHQDR
Trigger: CCTGTCCTGATGACCCCTCCACATGGGAGCATGCTT...TAAGGAGTGAGCAGATGGCCTTCGTTCTGAAAACTGCAGACAGGATTGTGGGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR CCA 90 bp TCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGAAGGACACATACTGTGGAGTGCCTCTTaGATGCTTCCTGCCAACTTC +
Preference number: 2 (lower is better)
Translates to: SQDIPKDPDMQSQREGHILWSAS*MLPANF
Trigger: GAAGTTGGCAGGAAGCATCCAAGAGGCACTCCACAG...TATGTGTCCTTCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR CCA 90 bp TCCTGCGGGTGGCTTCACATTCATCACCCGCCTCTGCAAACCATGCTTGCAGGAATAACCTTAAACTTCTaGTCCTCCTGCTTCTACCTC +
Preference number: 2 (lower is better)
Translates to: SCGWLHIHHPPLQTMLAGITLNF*SSCFYL
Trigger: GAGGTAGAAGCAGGAGGACCAGAAGTTTAAGGTTAT...TCCTGCAAGCATGGTTTGCAGAGGCGGGTGATGAATGTGAAGCCACCCGCAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR TCA 90 bp TCCTGCGGGTGGCTTCACATTCATCACCCGCCTCTGCAAACCATGCTTGCAGGATCTGCATTTCCAAGGTaGTCCACGGAATATTTTAGT +
Preference number: 2 (lower is better)
Translates to: SCGWLHIHHPPLQTMLAGSAFPR*STEYFS
Trigger: ACTAAAATATTCCGTGGATCACCTTGGAAATGCAGA...TCCTGCAAGCATGGTTTGCAGAGGCGGGTGATGAATGTGAAGCCACCCGCAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR GCA 90 bp AACCCACAATCCTGTCTGCAGTTTTCAGAACGAAGGCCATCTGCTCACTCCTTACCAAGGATCCAGACATaGAGTCCCAGAGAGAAGGAC +
Preference number: 2 (lower is better)
Translates to: NPQSCLQFSERRPSAHSLPRIQT*SPREKD
Trigger: GTCCTTCTCTCTGGGACTGCATGTCTGGATCCTTGG...TAAGGAGTGAGCAGATGGCCTTCGTTCTGAAAACTGCAGACAGGATTGTGGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR CCA 90 bp TCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGAAGGACACATAATCCCAGAGAAGCTGTaGAGTGCCTCTTGGATGCTT +
Preference number: 2 (lower is better)
Translates to: SQDIPKDPDMQSQREGHIIPEKL*SASWML
Trigger: AAGCATCCAAGAGGCACTCCACAGCTTCTCTGGGAT...TATGTGTCCTTCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR CCA 90 bp CAGAACCTACTCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGATTCAGGCCTCTACTGTaGACAGTGTGGGACACTATT +
Preference number: 2 (lower is better)
Translates to: QNLLTRHPQGSRHAVPERFRPLL*TVWDTI
Trigger: AATAGTGTCCCACACTGTCCACAGTAGAGGCCTGAA...TCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGAGTAGGTTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR CCA 90 bp CCTTTGGAAGAGCAGCCAGTGCTCTTACCCGCTGAGTCATGTCTCCAGCCCCGGTGTCACCTATTTTTCTaGCTACTAATCTTCTCCATT +
Preference number: 2 (lower is better)
Translates to: PLEEQPVLLPAESCLQPRCHLFF*LLIFSI
Trigger: AATGGAGAAGATTAGTAGCCAGAAAAATAGGTGACA...CCGGGGCTGGAGACATGACTCAGCGGGTAAGAGCACTGGCTGCTCTTCCAAAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR CAA 90 bp CTACCAAATAAGCCATGTCCCAAGCTAGCTTCAACAAGTCTTCATTaGCTGGAGCGAGGACTGGTGTGCAGAACTCCCAGTTTGGCTACT +
Preference number: 2 (lower is better)
Translates to: LPNKPCPKLASTSLH*LERGLVCRTPSLAT
Trigger: AGTAGCCAAACTGGGAGTTCTGCACACCAGTCCTCGCTCCAGCAAATGAAGACTTGTTGAAGCTAGCTTGGGACATGGCTTATTTGGTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR CAA 90 bp GCTCTGGCCTGTGTGCACCCCCTACCAAAGCTTTCTAGACTGGGATaGGACATAACAAAAATCACAGGATTAGCTGTGGGCTGTAATCTC +
Preference number: 2 (lower is better)
Translates to: ALACVHPLPKLSRLG*DITKITGLAVGCNL
Trigger: GAGATTACAGCCCACAGCTAATCCTGTGATTTTTGTTATGTCCAATCCCAGTCTAGAAAGCTTTGGTAGGGGGTGCACACAGGCCAGAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR-3UTR GCA 90 bp CAGAACCTACTCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGAGAGAGTCCTGAGTACTaGTTTTGTGCTATCCAAGTC +
Preference number: 2 (lower is better)
Translates to: QNLLTRHPQGSRHAVPERESPEY*FCAIQV
Trigger: GACTTGGATAGCACAAAAGCAGTACTCAGGACTCTC...TCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGAGTAGGTTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR GCA 90 bp GATAAGTCTCCTGTAACTCAGGCTTGCTATGCAGCTATGGATAACCTTAAACTTAGCTCCAGCTCCTACTaGTGCTGCTCCTGCCTAGGG +
Preference number: 2 (lower is better)
Translates to: DKSPVTQACYAAMDNLKLSSSSY*CCSCLG
Trigger: CCCTAGGCAGGAGCAGCAGCAGTAGGAGCTGGAGCT...AAGTTTAAGGTTATCCATAGCTGCATAGCAAGCCTGAGTTACAGGAGACTTATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR CAA 90 bp GAGGCAGAAGCAGGTAGTCAGCATTTTGGCTTTAAAGGAATATACTaGAGTGGCCAGGGTCTGCTAAGCAGCTGCTGGATCAAGGATCTT +
Preference number: 2 (lower is better)
Translates to: EAEAGSQHFGFKGIY*SGQGLLSSCWIKDL
Trigger: AAGATCCTTGATCCAGCAGCTGCTTAGCAGACCCTGGCCACTCAAGTATATTCCTTTAAAGCCAAAATGCTGACTACCTGCTTCTGCCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR TCA 90 bp TTCAGTTCCTTCTGGCTTTTCTCACATTTGGTTCAAACATGCCACCACCCAGTTGCTCAAGGAACTGTTTaGAGACAGGGGAAGGAAGGG +
Preference number: 2 (lower is better)
Translates to: FSSFWLFSHLVQTCHHPVAQGTV*RQGKEG
Trigger: CCCTTCCTTCCCCTGTCTTCAAACAGTTCCTTGAGC...AACTGGGTGGTGGCATGTTTGAACCAAATGTGAGAAAAGCCAGAAGGAACTGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR TCA 90 bp AACCCACAATCCTGTCTGCAGTTTTCAGAACGAAGGCCATCTGCTCACTCCTTACTCAGGAGAGAGTCCTaGGTACTGCTTTTGTGCTAT +
Preference number: 2 (lower is better)
Translates to: NPQSCLQFSERRPSAHSLLRRES*VLLLCY
Trigger: ATAGCACAAAAGCAGTACTCAGGACTCTCTCCTGAG...TAAGGAGTGAGCAGATGGCCTTCGTTCTGAAAACTGCAGACAGGATTGTGGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR GCA 90 bp AACCCACAATCCTGTCTGCAGTTTTCAGAACGAAGGCCATCTGCTCACTCCTTACTCTTGGATGCTTCCTaGCAACTTCACTTCTTGCTG +
Preference number: 2 (lower is better)
Translates to: NPQSCLQFSERRPSAHSLLLDAS*QLHFLL
Trigger: CAGCAAGAAGTGAAGTTGGCAGGAAGCATCCAAGAG...TAAGGAGTGAGCAGATGGCCTTCGTTCTGAAAACTGCAGACAGGATTGTGGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR GCA 90 bp ACCTGGGTAGGACACAGAAGCAAAGCAGTCCCCAACAGCACTATAGAAACTCAGGAGAGTCCTGAGTACTaGTTTTGTGCTATCCAAGTC +
Preference number: 2 (lower is better)
Translates to: TWVGHRSKAVPNSTIETQESPEY*FCAIQV
Trigger: GACTTGGATAGCACAAAAGCAGTACTCAGGACTCTC...CTGAGTTTCTATAGTGCTGTTGGGGACTGCTTTGCTTCTGTGTCCTACCCAGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR CCA 90 bp TTCAGTTCCTTCTGGCTTTTCTCACATTTGGTTCAAACATGCCACCACCCAGTTCTGTGGAGTGCCTCTTaGATGCTTCCTGCCAACTTC +
Preference number: 2 (lower is better)
Translates to: FSSFWLFSHLVQTCHHPVLWSAS*MLPANF
Trigger: GAAGTTGGCAGGAAGCATCCAAGAGGCACTCCACAG...AACTGGGTGGTGGCATGTTTGAACCAAATGTGAGAAAAGCCAGAAGGAACTGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR CCA 90 bp AACCCACAATCCTGTCTGCAGTTTTCAGAACGAAGGCCATCTGCTCACTCCTTACTGTCTGGCAAACAGTaGGTCTTGGGTATTCTATGC +
Preference number: 2 (lower is better)
Translates to: NPQSCLQFSERRPSAHSLLSGKQ*VLGILC
Trigger: GCATAGAATACCCAAGACCCACTGTTTGCCAGACAG...TAAGGAGTGAGCAGATGGCCTTCGTTCTGAAAACTGCAGACAGGATTGTGGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR CAA 90 bp GATGTGACATACATAGTACTCTCTTCTTTCTCTCTTACTGATCTTTaGTACTGCTGGTCTGAAGCCAGGCCACTGCTCAGGAGGGCAAGT +
Preference number: 2 (lower is better)
Translates to: DVTYIVLSSFSLTDL*YCWSEARPLLRRAS
Trigger: ACTTGCCCTCCTGAGCAGTGGCCTGGCTTCAGACCAGCAGTACAAAAGATCAGTAAGAGAGAAAGAAGAGAGTACTATGTATGTCACATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR-3UTR TCA 90 bp CAGAACCTACTCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGAAAATCTTGTCCAAAATaGTCCATGATGCTTGGGAAG +
Preference number: 2 (lower is better)
Translates to: QNLLTRHPQGSRHAVPERKSCPK*SMMLGK
Trigger: CTTCCCAAGCATCATGGATCATTTTGGACAAGATTT...TCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGAGTAGGTTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR TCA 90 bp CAGAACCTACTCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGATCTGCATTTCCAAGGTaGTCCACGGAATATTTTAGT +
Preference number: 2 (lower is better)
Translates to: QNLLTRHPQGSRHAVPERSAFPR*STEYFS
Trigger: ACTAAAATATTCCGTGGATCACCTTGGAAATGCAGA...TCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGAGTAGGTTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR TCA 90 bp TTCAGTTCCTTCTGGCTTTTCTCACATTTGGTTCAAACATGCCACCACCCAGTTGTTCCAGTCCAGTTCTaGAGTAAGCCTCCAAGACGT +
Preference number: 2 (lower is better)
Translates to: FSSFWLFSHLVQTCHHPVVPVQF*SKPPRR
Trigger: ACGTCTTGGAGGCTTACTTCAGAACTGGACTGGAAC...AACTGGGTGGTGGCATGTTTGAACCAAATGTGAGAAAAGCCAGAAGGAACTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR GCA 90 bp ACCTGGGTAGGACACAGAAGCAAAGCAGTCCCCAACAGCACTATAGAAACTCAGAGCACAGAAAAAGGATaGCTCAAATGTCCACCTGAT +
Preference number: 2 (lower is better)
Translates to: TWVGHRSKAVPNSTIETQSTEKG*LKCPPD
Trigger: ATCAGGTGGACATTTGAGGCATCCTTTTTCTGTGCT...CTGAGTTTCTATAGTGCTGTTGGGGACTGCTTTGCTTCTGTGTCCTACCCAGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR CCA 90 bp GTGGCAGAGGCTCTGCATTTCCAAGGTGATCCACGGAATATTTTAGTTTGGCCATATGCCAGCTTTAGCTaGAAGAGGAACCTCAGGAAA +
Preference number: 2 (lower is better)
Translates to: VAEALHFQGDPRNILVWPYASFS*KRNLRK
Trigger: TTTCCTGAGGTTCCTCTTCCAGCTAAAGCTGGCATA...TGGCCAAACTAAAATATTCCGTGGATCACCTTGGAAATGCAGAGCCTCTGCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR CCA 90 bp TTCAGTTCCTTCTGGCTTTTCTCACATTTGGTTCAAACATGCCACCACCCAGTTGGAGCCTGGAAACCTTaGTTCCAGTCCAGTTCTGAA +
Preference number: 2 (lower is better)
Translates to: FSSFWLFSHLVQTCHHPVGAWKP*FQSSSE
Trigger: TTCAGAACTGGACTGGAACCAAGGTTTCCAGGCTCC...AACTGGGTGGTGGCATGTTTGAACCAAATGTGAGAAAAGCCAGAAGGAACTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR TCA 90 bp GATAAGTCTCCTGTAACTCAGGCTTGCTATGCAGCTATGGATAACCTTAAACTTAGCTGGTGTATACACTaGGAAGGGGCTGGTTATGCC +
Preference number: 2 (lower is better)
Translates to: DKSPVTQACYAAMDNLKLSWCIH*EGAGYA
Trigger: GGCATAACCAGCCCCTTCTCAGTGTATACACCAGCT...AAGTTTAAGGTTATCCATAGCTGCATAGCAAGCCTGAGTTACAGGAGACTTATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR TCA 90 bp TCAGCTTCTGGGGAAAGTGATGGAACATTTTGGGTGGGATATCTCTGGCTTCCTGTACCCGCTCATCTCTaGTGCTTCAATATGAATAAC +
Preference number: 2 (lower is better)
Translates to: SASGESDGTFWVGYLWLPVPAHL*CFNMNN
Trigger: GTTATTCATATTGAAGCATCAGAGATGAGCGGGTAC...AGGAAGCCAGAGATATCCCACCCAAAATGTTCCATCACTTTCCCCAGAAGCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR-3UTR GCA 90 bp TTCAGTTCCTTCTGGCTTTTCTCACATTTGGTTCAAACATGCCACCACCCAGTTAGGATTACAGGTATGTaGCACCATGGCTGGTGTATG +
Preference number: 2 (lower is better)
Translates to: FSSFWLFSHLVQTCHHPVRITGM*HHGWCM
Trigger: CATACACCAGCCATGGTGGCACATACCTGTAATCCT...AACTGGGTGGTGGCATGTTTGAACCAAATGTGAGAAAAGCCAGAAGGAACTGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR GCA 90 bp TTCAGTTCCTTCTGGCTTTTCTCACATTTGGTTCAAACATGCCACCACCCAGTTACCCACAATCCTGTCTaGAGTTTTCAGAACGAAGGC +
Preference number: 2 (lower is better)
Translates to: FSSFWLFSHLVQTCHHPVTHNPV*SFQNEG
Trigger: GCCTTCGTTCTGAAAACTGCAGACAGGATTGTGGGT...AACTGGGTGGTGGCATGTTTGAACCAAATGTGAGAAAAGCCAGAAGGAACTGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR GCA 90 bp GGTGGGTGGAAAAAGAGTGTGATCACAGATGGCCTGTCATTCAGCTGTGCCTTTAACCTGCTTGATGTATaGCTCTGTGATAATAGAGAG +
Preference number: 2 (lower is better)
Translates to: GGWKKSVITDGLSFSCAFNLLDV*LCDNRE
Trigger: CTCTCTATTATCACAGAGGCATACATCAAGCAGGTT...AAAGGCACAGCTGAATGACAGGCCATCTGTGATCACACTCTTTTTCCACCCACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR-3UTR CCA 90 bp GTAGCTGCCTTTAGATACATCAGGAGAAGGCATCAGATCTCATTACAGATGGTTGAGTGTGATCACAGATaGCCTGTCATTCAGCTGTGC +
Preference number: 2 (lower is better)
Translates to: VAAFRYIRRRHQISLQMVECDHR*PVIQLC
Trigger: GCACAGCTGAATGACAGGCCATCTGTGATCACACTC...AACCATCTGTAATGAGATCTGATGCCTTCTCCTGATGTATCTAAAGGCAGCTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR CAA 90 bp ATTGGTTTTCTGTATGGATGGAGCCTTTGTAGCCTCATTAGGAACTaGGAAAGCCACAGGAGTGGAACGAAGGCCTTATTATCAAACAGC +
Preference number: 2 (lower is better)
Translates to: IGFLYGWSLCSLIRN*ESHRSGTKALLSNS
Trigger: GCTGTTTGATAATAAGGCCTTCGTTCCACTCCTGTGGCTTTCCAAGTTCCTAATGAGGCTACAAAGGCTCCATCCATACAGAAAACCAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR TCA 90 bp ACTGGTGTGCAGAACTCCCAGTTTGGCTACTTTTGTTATTTACTTCCTGAAATTAGCTGGTGTATACACTaGGAAGGGGCTGGTTATGCC +
Preference number: 2 (lower is better)
Translates to: TGVQNSQFGYFCYLLPEISWCIH*EGAGYA
Trigger: GGCATAACCAGCCCCTTCTCAGTGTATACACCAGCT...AATTTCAGGAAGTAAATAACAAAAGTAGCCAAACTGGGAGTTCTGCACACCAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR TCA 90 bp ATTAATGCTGGCATTTCCTCTAAATTTTCTTCCAGTCCTTTTGAGACTAACAGCTTTGTACTGCTGGTCTaGAGCCAGGCCACTGCTCAG +
Preference number: 2 (lower is better)
Translates to: INAGISSKFSSSPFETNSFVLLV*SQATAQ
Trigger: CTGAGCAGTGGCCTGGCTTCAGACCAGCAGTACAAA...GCTGTTAGTCTCAAAAGGACTGGAAGAAAATTTAGAGGAAATGCCAGCATTAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR-3UTR CCA 90 bp TTCAGTTCCTTCTGGCTTTTCTCACATTTGGTTCAAACATGCCACCACCCAGTTTATGCCAGCTTTAGCTaGAAGAGGAACCTCAGGAAA +
Preference number: 2 (lower is better)
Translates to: FSSFWLFSHLVQTCHHPVYASFS*KRNLRK
Trigger: TTTCCTGAGGTTCCTCTTCCAGCTAAAGCTGGCATA...AACTGGGTGGTGGCATGTTTGAACCAAATGTGAGAAAAGCCAGAAGGAACTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR CCA 90 bp TTCAGTTCCTTCTGGCTTTTCTCACATTTGGTTCAAACATGCCACCACCCAGTTGTGTGTAGACAAACCTaGGTAGGACACAGAAGCAAA +
Preference number: 2 (lower is better)
Translates to: FSSFWLFSHLVQTCHHPVVCRQT*VGHRSK
Trigger: TTTGCTTCTGTGTCCTACCCAGGTTTGTCTACACAC...AACTGGGTGGTGGCATGTTTGAACCAAATGTGAGAAAAGCCAGAAGGAACTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR CAA 90 bp CCAGAAAATGAACAACAAAACCAAGTCCAACAGTATCAAACCTGCTaGATGTATGCCTCTGTGATAATAGAGAGAGGGTCCTGCCTCATC +
Preference number: 2 (lower is better)
Translates to: PENEQQNQVQQYQTC*MYASVIIERGSCLI
Trigger: GATGAGGCAGGACCCTCTCTCTATTATCACAGAGGCATACATCAAGCAGGTTTGATACTGTTGGACTTGGTTTTGTTGTTCATTTTCTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR-3UTR GCA 90 bp TTCAGTTCCTTCTGGCTTTTCTCACATTTGGTTCAAACATGCCACCACCCAGTTGAGGAGTTGGAGAACTaGAGAAAGGAACTCCTTAAA +
Preference number: 2 (lower is better)
Translates to: FSSFWLFSHLVQTCHHPVEELEN*RKELLK
Trigger: TTTAAGGAGTTCCTTTCTGCAGTTCTCCAACTCCTC...AACTGGGTGGTGGCATGTTTGAACCAAATGTGAGAAAAGCCAGAAGGAACTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR CCA 90 bp ACACAAGCAAAATCAAGAAAAACACTGGAGTTAAGAGGTGGGTTCCAAACTAACATCCCAGAGAAGCTGTaGAGTGCCTCTTGGATGCTT +
Preference number: 2 (lower is better)
Translates to: TQAKSRKTLELRGGFQTNIPEKL*SASWML
Trigger: AAGCATCCAAGAGGCACTCCACAGCTTCTCTGGGAT...GTTAGTTTGGAACCCACCTCTTAACTCCAGTGTTTTTCTTGATTTTGCTTGTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR CCA 90 bp TTCAGTTCCTTCTGGCTTTTCTCACATTTGGTTCAAACATGCCACCACCCAGTTAATAAACCTATGAGGTaGTGTCAAAACCAGGTGCGA +
Preference number: 2 (lower is better)
Translates to: FSSFWLFSHLVQTCHHPVNKPMR*CQNQVR
Trigger: TCGCACCTGGTTTTGACACCACCTCATAGGTTTATT...AACTGGGTGGTGGCATGTTTGAACCAAATGTGAGAAAAGCCAGAAGGAACTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR CCA 90 bp AACCCACAATCCTGTCTGCAGTTTTCAGAACGAAGGCCATCTGCTCACTCCTTAGCAAACAGTGGGTCTTaGGTATTCTATGCTAAAATA +
Preference number: 2 (lower is better)
Translates to: NPQSCLQFSERRPSAHSLANSGS*VFYAKI
Trigger: TATTTTAGCATAGAATACCCAAGACCCACTGTTTGC...TAAGGAGTGAGCAGATGGCCTTCGTTCTGAAAACTGCAGACAGGATTGTGGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR CCA 90 bp GATAAGTCTCCTGTAACTCAGGCTTGCTATGCAGCTATGGATAACCTTAAACTTCTGTCTGGCAAACAGTaGGTCTTGGGTATTCTATGC +
Preference number: 2 (lower is better)
Translates to: DKSPVTQACYAAMDNLKLLSGKQ*VLGILC
Trigger: GCATAGAATACCCAAGACCCACTGTTTGCCAGACAG...AAGTTTAAGGTTATCCATAGCTGCATAGCAAGCCTGAGTTACAGGAGACTTATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR CCA 90 bp AACCCACAATCCTGTCTGCAGTTTTCAGAACGAAGGCCATCTGCTCACTCCTTAGCAGAACTCCCAGTTTaGCTACTTTTGTTATTTACT +
Preference number: 2 (lower is better)
Translates to: NPQSCLQFSERRPSAHSLAELPV*LLLLFT
Trigger: AGTAAATAACAAAAGTAGCCAAACTGGGAGTTCTGC...TAAGGAGTGAGCAGATGGCCTTCGTTCTGAAAACTGCAGACAGGATTGTGGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR CCA 90 bp TTCAGTTCCTTCTGGCTTTTCTCACATTTGGTTCAAACATGCCACCACCCAGTTATAACCTTAAACTTCTaGTCCTCCTGCTTCTACCTC +
Preference number: 2 (lower is better)
Translates to: FSSFWLFSHLVQTCHHPVITLNF*SSCFYL
Trigger: GAGGTAGAAGCAGGAGGACCAGAAGTTTAAGGTTAT...AACTGGGTGGTGGCATGTTTGAACCAAATGTGAGAAAAGCCAGAAGGAACTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR CAA 90 bp TATGTAACTGTAATGTTGAACTTCAGGCAAGGAAGGGTCTCTATGTaGCTGCAGGGAATCTTTGCAAGGGTTCAGATTTGTAAGGGTTAC +
Preference number: 2 (lower is better)
Translates to: YVTVMLNFRQGRVSM*LQGIFARVQICKGY
Trigger: GTAACCCTTACAAATCTGAACCCTTGCAAAGATTCCCTGCAGCAACATAGAGACCCTTCCTTGCCTGAAGTTCAACATTACAGTTACATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR-3UTR TCA 90 bp ACTGGTGTGCAGAACTCCCAGTTTGGCTACTTTTGTTATTTACTTCCTGAAATTCTCAGGAGAGAGTCCTaGGTACTGCTTTTGTGCTAT +
Preference number: 2 (lower is better)
Translates to: TGVQNSQFGYFCYLLPEILRRES*VLLLCY
Trigger: ATAGCACAAAAGCAGTACTCAGGACTCTCTCCTGAG...AATTTCAGGAAGTAAATAACAAAAGTAGCCAAACTGGGAGTTCTGCACACCAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR TCA 90 bp TTCAGTTCCTTCTGGCTTTTCTCACATTTGGTTCAAACATGCCACCACCCAGTTTCTGCATTTCCAAGGTaGTCCACGGAATATTTTAGT +
Preference number: 2 (lower is better)
Translates to: FSSFWLFSHLVQTCHHPVSAFPR*STEYFS
Trigger: ACTAAAATATTCCGTGGATCACCTTGGAAATGCAGA...AACTGGGTGGTGGCATGTTTGAACCAAATGTGAGAAAAGCCAGAAGGAACTGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR TCA 90 bp TTCAGTTCCTTCTGGCTTTTCTCACATTTGGTTCAAACATGCCACCACCCAGTTGAACCCTTGTTCCAATaGGATAGGAACTCAGTATTT +
Preference number: 2 (lower is better)
Translates to: FSSFWLFSHLVQTCHHPVEPLFQ*DRNSVF
Trigger: AAATACTGAGTTCCTATCTCATTGGAACAAGGGTTC...AACTGGGTGGTGGCATGTTTGAACCAAATGTGAGAAAAGCCAGAAGGAACTGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR TCA 90 bp TCTATGTTGCTGCAGGGAATCTTTGCAAGGGTTCAGATTTGTAAGGGTTACCTGTTCTTTCTCTCTTACTaGTCTTTTGTACTGCTGGTC +
Preference number: 2 (lower is better)
Translates to: SMLLQGIFARVQICKGYLFFLSY*SFVLLV
Trigger: GACCAGCAGTACAAAAGATCAGTAAGAGAGAAAGAA...CAGGTAACCCTTACAAATCTGAACCCTTGCAAAGATTCCCTGCAGCAACATAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR-3UTR GCA 90 bp ATTCAGACTTGTTCTTCAGACTTGTTCATTGTACAAAAAGTGACCACAGCTTCCCTCTTGGATGCTTCCTaGCAACTTCACTTCTTGCTG +
Preference number: 2 (lower is better)
Translates to: IQTCSSDLFIVQKVTTASLLDAS*QLHFLL
Trigger: CAGCAAGAAGTGAAGTTGGCAGGAAGCATCCAAGAG...GGAAGCTGTGGTCACTTTTTGTACAATGAACAAGTCTGAAGAACAAGTCTGAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR GCA 90 bp GATAAGTCTCCTGTAACTCAGGCTTGCTATGCAGCTATGGATAACCTTAAACTTGAGAGTCCTGAGTACTaGTTTTGTGCTATCCAAGTC +
Preference number: 2 (lower is better)
Translates to: DKSPVTQACYAAMDNLKLESPEY*FCAIQV
Trigger: GACTTGGATAGCACAAAAGCAGTACTCAGGACTCTC...AAGTTTAAGGTTATCCATAGCTGCATAGCAAGCCTGAGTTACAGGAGACTTATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR CCA 90 bp ACACAAGCAAAATCAAGAAAAACACTGGAGTTAAGAGGTGGGTTCCAAACTAACTTCAGGCCTCTACTGTaGACAGTGTGGGACACTATT +
Preference number: 2 (lower is better)
Translates to: TQAKSRKTLELRGGFQTNFRPLL*TVWDTI
Trigger: AATAGTGTCCCACACTGTCCACAGTAGAGGCCTGAA...GTTAGTTTGGAACCCACCTCTTAACTCCAGTGTTTTTCTTGATTTTGCTTGTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR CCA 90 bp ATTAATGCTGGCATTTCCTCTAAATTTTCTTCCAGTCCTTTTGAGACTAACAGCAATCTCACTCAGCAGTaGCAGGCTGAGGCAAGTTTG +
Preference number: 2 (lower is better)
Translates to: INAGISSKFSSSPFETNSNLTQQ*QAEASL
Trigger: CAAACTTGCCTCAGCCTGCCACTGCTGAGTGAGATT...GCTGTTAGTCTCAAAAGGACTGGAAGAAAATTTAGAGGAAATGCCAGCATTAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR-3UTR TCA 90 bp ATTCAGACTTGTTCTTCAGACTTGTTCATTGTACAAAAAGTGACCACAGCTTCCCAGGATCAAAGGCAATaGCTTATCCCAATTGACTGC +
Preference number: 2 (lower is better)
Translates to: IQTCSSDLFIVQKVTTASQDQRQ*LIPIDC
Trigger: GCAGTCAATTGGGATAAGTCATTGCCTTTGATCCTG...GGAAGCTGTGGTCACTTTTTGTACAATGAACAAGTCTGAAGAACAAGTCTGAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR GCA 90 bp GATAAGTCTCCTGTAACTCAGGCTTGCTATGCAGCTATGGATAACCTTAAACTTGAGGAGTTGGAGAACTaGAGAAAGGAACTCCTTAAA +
Preference number: 2 (lower is better)
Translates to: DKSPVTQACYAAMDNLKLEELEN*RKELLK
Trigger: TTTAAGGAGTTCCTTTCTGCAGTTCTCCAACTCCTC...AAGTTTAAGGTTATCCATAGCTGCATAGCAAGCCTGAGTTACAGGAGACTTATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR CCA 90 bp ACTGGTGTGCAGAACTCCCAGTTTGGCTACTTTTGTTATTTACTTCCTGAAATTTATGCCAGCTTTAGCTaGAAGAGGAACCTCAGGAAA +
Preference number: 2 (lower is better)
Translates to: TGVQNSQFGYFCYLLPEIYASFS*KRNLRK
Trigger: TTTCCTGAGGTTCCTCTTCCAGCTAAAGCTGGCATA...AATTTCAGGAAGTAAATAACAAAAGTAGCCAAACTGGGAGTTCTGCACACCAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR TCA 90 bp ATTCAGACTTGTTCTTCAGACTTGTTCATTGTACAAAAAGTGACCACAGCTTCCATTCTTCACAAACTCTaGGCTGTGAGGGAGACTATA +
Preference number: 2 (lower is better)
Translates to: IQTCSSDLFIVQKVTTASILHKL*AVRETI
Trigger: TATAGTCTCCCTCACAGCTCAGAGTTTGTGAAGAAT...GGAAGCTGTGGTCACTTTTTGTACAATGAACAAGTCTGAAGAACAAGTCTGAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR TCA 90 bp ACTGGTGTGCAGAACTCCCAGTTTGGCTACTTTTGTTATTTACTTCCTGAAATTAGAATGACCAAGCCCTaGCTACTTTTCTTCCTCAAA +
Preference number: 2 (lower is better)
Translates to: TGVQNSQFGYFCYLLPEIRMTKP*LLFFLK
Trigger: TTTGAGGAAGAAAAGTAGTCAGGGCTTGGTCATTCT...AATTTCAGGAAGTAAATAACAAAAGTAGCCAAACTGGGAGTTCTGCACACCAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR GCA 90 bp ACTGGTGTGCAGAACTCCCAGTTTGGCTACTTTTGTTATTTACTTCCTGAAATTAGCACAGAAAAAGGATaGCTCAAATGTCCACCTGAT +
Preference number: 2 (lower is better)
Translates to: TGVQNSQFGYFCYLLPEISTEKG*LKCPPD
Trigger: ATCAGGTGGACATTTGAGGCATCCTTTTTCTGTGCT...AATTTCAGGAAGTAAATAACAAAAGTAGCCAAACTGGGAGTTCTGCACACCAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR GCA 90 bp ATTCAGACTTGTTCTTCAGACTTGTTCATTGTACAAAAAGTGACCACAGCTTCCAGCACAGAAAAAGGATaGCTCAAATGTCCACCTGAT +
Preference number: 2 (lower is better)
Translates to: IQTCSSDLFIVQKVTTASSTEKG*LKCPPD
Trigger: ATCAGGTGGACATTTGAGGCATCCTTTTTCTGTGCT...GGAAGCTGTGGTCACTTTTTGTACAATGAACAAGTCTGAAGAACAAGTCTGAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR TCA 90 bp ACTGGTGTGCAGAACTCCCAGTTTGGCTACTTTTGTTATTTACTTCCTGAAATTAAATCTTGTCCAAAATaGTCCATGATGCTTGGGAAG +
Preference number: 2 (lower is better)
Translates to: TGVQNSQFGYFCYLLPEIKSCPK*SMMLGK
Trigger: CTTCCCAAGCATCATGGATCATTTTGGACAAGATTT...AATTTCAGGAAGTAAATAACAAAAGTAGCCAAACTGGGAGTTCTGCACACCAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR TCA 90 bp ATTCAGACTTGTTCTTCAGACTTGTTCATTGTACAAAAAGTGACCACAGCTTCCAAATCTTGTCCAAAATaGTCCATGATGCTTGGGAAG +
Preference number: 2 (lower is better)
Translates to: IQTCSSDLFIVQKVTTASKSCPK*SMMLGK
Trigger: CTTCCCAAGCATCATGGATCATTTTGGACAAGATTT...GGAAGCTGTGGTCACTTTTTGTACAATGAACAAGTCTGAAGAACAAGTCTGAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR TCA 90 bp ACTGGTGTGCAGAACTCCCAGTTTGGCTACTTTTGTTATTTACTTCCTGAAATTGAACCCTTGTTCCAATaGGATAGGAACTCAGTATTT +
Preference number: 2 (lower is better)
Translates to: TGVQNSQFGYFCYLLPEIEPLFQ*DRNSVF
Trigger: AAATACTGAGTTCCTATCTCATTGGAACAAGGGTTC...AATTTCAGGAAGTAAATAACAAAAGTAGCCAAACTGGGAGTTCTGCACACCAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR TCA 90 bp AATAAGAAATTCACTCTCCTTGATGAACATTTGGGAACTTTAAGTGGGTGGGTGAACCAACCCAGAAAATaGACAACAAAACCAAGTCCA +
Preference number: 2 (lower is better)
Translates to: NKKFTLLDEHLGTLSGWVNQPRK*TTKPSP
Trigger: TGGACTTGGTTTTGTTGTTCATTTTCTGGGTTGGTT...CACCCACCCACTTAAAGTTCCCAAATGTTCATCAAGGAGAGTGAATTTCTTATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR-3UTR CCA 90 bp ACTGGTGTGCAGAACTCCCAGTTTGGCTACTTTTGTTATTTACTTCCTGAAATTGCAAACAGTGGGTCTTaGGTATTCTATGCTAAAATA +
Preference number: 2 (lower is better)
Translates to: TGVQNSQFGYFCYLLPEIANSGS*VFYAKI
Trigger: TATTTTAGCATAGAATACCCAAGACCCACTGTTTGC...AATTTCAGGAAGTAAATAACAAAAGTAGCCAAACTGGGAGTTCTGCACACCAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR CCA 90 bp ATTAATGCTGGCATTTCCTCTAAATTTTCTTCCAGTCCTTTTGAGACTAACAGCACTAATCTTCTCCATTaGAGCCTAAATTTCTCCTCC +
Preference number: 2 (lower is better)
Translates to: INAGISSKFSSSPFETNSTNLLH*SLNFSS
Trigger: GGAGGAGAAATTTAGGCTCCAATGGAGAAGATTAGT...GCTGTTAGTCTCAAAAGGACTGGAAGAAAATTTAGAGGAAATGCCAGCATTAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR-3UTR CCA 90 bp ATTCAGACTTGTTCTTCAGACTTGTTCATTGTACAAAAAGTGACCACAGCTTCCCTAATAAACTTTAGATaGCAAGGAAAAGATGTGAGC +
Preference number: 2 (lower is better)
Translates to: IQTCSSDLFIVQKVTTASLINFR*QGKDVS
Trigger: GCTCACATCTTTTCCTTGCCATCTAAAGTTTATTAG...GGAAGCTGTGGTCACTTTTTGTACAATGAACAAGTCTGAAGAACAAGTCTGAAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR GCA 72 bp GAGCCAGGAATCACTTGTAGCTCCAGCTCCTACTGCTaGTGCTCCTGCCTAGGGAGGAGTTGGAGAACTGCA +
Preference number: 3 (lower is better)
Translates to: EPGITCSSSSYC*CSCLGRSWRTA
Trigger: TGCAGTTCTCCAACTCCTCCCTAGGCAGGAGCAGCAGCAGTAGGAGCTGGAGCTACAAGTGATTCCTGGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR CCA 72 bp TTCCTGGGAACCACAAGGCAGGGACTGGGCTGTCCCTaGCAGACACCAGCTGCACATGCCCTTTTTGGTATA +
Preference number: 3 (lower is better)
Translates to: FLGTTRQGLGCP*QTPAAHALFGI
Trigger: TATACCAAAAAGGGCATGTGCAGCTGGTGTCTGCCAGGGACAGCCCAGTCCCTGCCTTGTGGTTCCCAGGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR TCA 72 bp TCACTCGAGGGTGGATATGGGGCTCAAGGAACTGTTTaGAGACAGGGGAAGGAAGGGCCTCCTCCTAAGCCT +
Preference number: 3 (lower is better)
Translates to: SLEGGYGAQGTV*RQGKEGPPPKP
Trigger: AGGCTTAGGAGGAGGCCCTTCCTTCCCCTGTCTTCAAACAGTTCCTTGAGCCCCATATCCACCCTCGAGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR TCA 72 bp CAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTaGACTCGGGACCTTTGGAAGAGCAGCCAGTGCTCT +
Preference number: 3 (lower is better)
Translates to: QMVVSHHVVAGN*TRDLWKSSQCS
Trigger: AGAGCACTGGCTGCTCTTCCAAAGGTCCCGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR GCA 72 bp GGAATATACTTGAGTGGCCAGGGTCTGCTAAGCAGCTaGTGGATCAAGGATCTTCCACAGCTGGCCATCTGG +
Preference number: 3 (lower is better)
Translates to: GIYLSGQGLLSS*WIKDLPQLAIW
Trigger: CCAGATGGCCAGCTGTGGAAGATCCTTGATCCAGCAGCTGCTTAGCAGACCCTGGCCACTCAAGTATATTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR CCA 72 bp ATATACTTGAGTGGCCAGGGTCTGCTAAGCAGCTGCTaGATCAAGGATCTTCCACAGCTGGCCATCTGGTCC +
Preference number: 3 (lower is better)
Translates to: IYLSGQGLLSSC*IKDLPQLAIWS
Trigger: GGACCAGATGGCCAGCTGTGGAAGATCCTTGATCCAGCAGCTGCTTAGCAGACCCTGGCCACTCAAGTATAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR CCA 72 bp ACAGGATTAGCTGTGGGCTGTAATCTCACTCAGCAGTaGCAGGCTGAGGCAAGTTTGTGTCAGCGCTACAGA +
Preference number: 3 (lower is better)
Translates to: TGLAVGCNLTQQ*QAEASLCQRYR
Trigger: TCTGTAGCGCTGACACAAACTTGCCTCAGCCTGCCACTGCTGAGTGAGATTACAGCCCACAGCTAATCCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR-3UTR CAA 90 bp TCCTGCGGGTGGCTTCACATTCATCACCCGCCTCTGCAAACCATGCTTGCAGGATGGCTTTTCTCACATTaGGTTCAAACATGCCACCAC +
Preference number: 3 (lower is better)
Translates to: SCGWLHIHHPPLQTMLAGWLFSH*VQTCHH
Trigger: GTGGTGGCATGTTTGAACCAAATGTGAGAAAAGCCA...TCCTGCAAGCATGGTTTGCAGAGGCGGGTGATGAATGTGAAGCCACCCGCAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR CAA 90 bp ACCTGGGTAGGACACAGAAGCAAAGCAGTCCCCAACAGCACTATAGAAACTCAGGGCTCAAGGAACTGTTaGAAGACAGGGGAAGGAAGG +
Preference number: 3 (lower is better)
Translates to: TWVGHRSKAVPNSTIETQGSRNC*KTGEGR
Trigger: CCTTCCTTCCCCTGTCTTCAAACAGTTCCTTGAGCC...CTGAGTTTCTATAGTGCTGTTGGGGACTGCTTTGCTTCTGTGTCCTACCCAGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR CAA 90 bp TCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGAAGGACACATAGGCTCAAGGAACTGTTaGAAGACAGGGGAAGGAAGG +
Preference number: 3 (lower is better)
Translates to: SQDIPKDPDMQSQREGHIGSRNC*KTGEGR
Trigger: CCTTCCTTCCCCTGTCTTCAAACAGTTCCTTGAGCC...TATGTGTCCTTCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR TCA 72 bp CTTCAGGCCTCTACTGTGGACAGTGTGGGACACTATTaGCAATATGCTAATGCAAGGAGTCGGAGGGAGCTG +
Preference number: 3 (lower is better)
Translates to: LQASTVDSVGHY*QYANARSRREL
Trigger: CAGCTCCCTCCGACTCCTTGCATTAGCATATTGTCAATAGTGTCCCACACTGTCCACAGTAGAGGCCTGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR GCA 72 bp GAACCTACTCACAAGACATCCCCAAGGATCCAGACATaGAGTCCCAGAGAGAAGGACACATACAACAAGGCG +
Preference number: 3 (lower is better)
Translates to: EPTHKTSPRIQT*SPREKDTYNKA
Trigger: CGCCTTGTTGTATGTGTCCTTCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGAGTAGGTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR GCA 72 bp CTGATCTTTTGTACTGCTGGTCTGAAGCCAGGCCACTaGTCAGGAGGGCAAGTGTCATCGTTAGGATACATC +
Preference number: 3 (lower is better)
Translates to: LIFCTAGLKPGH*SGGQVSSLGYI
Trigger: GATGTATCCTAACGATGACACTTGCCCTCCTGAGCAGTGGCCTGGCTTCAGACCAGCAGTACAAAAGATCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR CCA 72 bp AGCACAGAAAAACCAGACTCAAATGCATCCTGCGGGTaGCTTCACATTCATCACCCGCCTCTGCAAACCATG +
Preference number: 3 (lower is better)
Translates to: STEKPDSNASCG*LHIHHPPLQTM
Trigger: CATGGTTTGCAGAGGCGGGTGATGAATGTGAAGCCACCCGCAGGATGCATTTGAGTCTGGTTTTTCTGTGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR CCA 72 bp CTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTaGGAATTGAACTCGGGACCTTTGGAAGAGCAGCCA +
Preference number: 3 (lower is better)
Translates to: LITDGCEPPCGC*ELNSGPLEEQP
Trigger: TGGCTGCTCTTCCAAAGGTCCCGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR-3UTR CAA 90 bp GGACCTTTGGAAGAGCAGCCAGTGCTCTTACCCGCTGAGTCATGTCTCCAGCCCAGAAATTCACTCTCCTaGATGAACATTTGGGAACTT +
Preference number: 3 (lower is better)
Translates to: GPLEEQPVLLPAESCLQPRNSLS*MNIWEL
Trigger: AAGTTCCCAAATGTTCATCAAGGAGAGTGAATTTCT...GGGCTGGAGACATGACTCAGCGGGTAAGAGCACTGGCTGCTCTTCCAAAGGTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR TCA 72 bp GCCAGGAGCCTGGAAACCTTGGTTCCAGTCCAGTTCTaGAGTAAGCCTCCAAGACGTGTCCTATTTGTAAAG +
Preference number: 3 (lower is better)
Translates to: ARSLETLVPVQF*SKPPRRVLFVK
Trigger: CTTTACAAATAGGACACGTCTTGGAGGCTTACTTCAGAACTGGACTGGAACCAAGGTTTCCAGGCTCCTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR TCA 72 bp TCAGGAGAAGGCATCAGATCTCATTACAGATGGTTGTaGGCCACCATGTGGTTGCTGGGAATTGAACTCGGG +
Preference number: 3 (lower is better)
Translates to: SGEGIRSHYRWL*ATMWLLGIELG
Trigger: CCCGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATCTGATGCCTTCTCCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR GCA 72 bp CGAATAATCCCATCAGGGTTAGGAGCACTGCTTAGGTaGCAAACAGAACCTACTCACAAGACATCCCCAAGG +
Preference number: 3 (lower is better)
Translates to: RIIPSGLGALLR*QTEPTHKTSPR
Trigger: CCTTGGGGATGTCTTGTGAGTAGGTTCTGTTTGGCACCTAAGCAGTGCTCCTAACCCTGATGGGATTATTCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR GCA 72 bp CATCCTGCGGGTGGCTTCACATTCATCACCCGCCTCTaGAAACCATGCTTGCAGGATTGGCTTTTATTTACA +
Preference number: 3 (lower is better)
Translates to: HPAGGFTFITRL*KPCLQDWLLFT
Trigger: TGTAAATAAAAGCCAATCCTGCAAGCATGGTTTGCAGAGGCGGGTGATGAATGTGAAGCCACCCGCAGGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR GCA 72 bp GATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTaGTGGGAATTGAACTCGGGACCTTTGGAAGAGCAG +
Preference number: 3 (lower is better)
Translates to: DLITDGCEPPCG*WELNSGPLEEQ
Trigger: CTGCTCTTCCAAAGGTCCCGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR CCA 72 bp CAAGTCTCTTTTAGGCCAATCAGTGTCACTCGAGGGTaGATATGGGGCTCAAGGAACTGTTTGAAGACAGGG +
Preference number: 3 (lower is better)
Translates to: QVSFRPISVTRG*IWGSRNCLKTG
Trigger: CCCTGTCTTCAAACAGTTCCTTGAGCCCCATATCCACCCTCGAGTGACACTGATTGGCCTAAAAGAGACTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR CCA 72 bp CATGCCCTTTTTGGTATAAGCATTGACAGTTTACACTaGGCAGCTGGAGGCCTGATAAGACGGTGTCTGAGC +
Preference number: 3 (lower is better)
Translates to: HALFGISIDSLH*AAGGLIRRCLS
Trigger: GCTCAGACACCGTCTTATCAGGCCTCCAGCTGCCCAGTGTAAACTGTCAATGCTTATACCAAAAAGGGCATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR CCA 72 bp GGGGAAAGTGATGGAACATTTTGGGTGGGATATCTCTaGCTTCCTGGATGTACCCGCTCATCTCTGATGCTT +
Preference number: 3 (lower is better)
Translates to: GESDGTFWVGYL*LPGCTRSSLML
Trigger: AAGCATCAGAGATGAGCGGGTACATCCAGGAAGCCAGAGATATCCCACCCAAAATGTTCCATCACTTTCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR-3UTR CAA 90 bp TCCTGCGGGTGGCTTCACATTCATCACCCGCCTCTGCAAACCATGCTTGCAGGACAGGTAGTCAGCATTTaGGCTTTAAAGGAATATACT +
Preference number: 3 (lower is better)
Translates to: SCGWLHIHHPPLQTMLAGQVVSI*ALKEYT
Trigger: AGTATATTCCTTTAAAGCCAAAATGCTGACTACCTG...TCCTGCAAGCATGGTTTGCAGAGGCGGGTGATGAATGTGAAGCCACCCGCAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR CAA 90 bp TCGGGACCTTTGGAAGAGCAGCCAGTGCTCTTACCCGCTGAGTCATGTCTCCAGAGAGTGAGAAACATCTaGAAAACCAACCCAGAAAAT +
Preference number: 3 (lower is better)
Translates to: SGPLEEQPVLLPAESCLQRVRNI*KTNPEN
Trigger: ATTTTCTGGGTTGGTTTTCAAGATGTTTCTCACTCT...CTGGAGACATGACTCAGCGGGTAAGAGCACTGGCTGCTCTTCCAAAGGTCCCGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR CCA 72 bp TTTCAGCTTCTGGGGAAAGTGATGGAACATTTTGGGTaGGATATCTCTGGCTTCCTGGATGTACCCGCTCAT +
Preference number: 3 (lower is better)
Translates to: FQLLGKVMEHFG*DISGFLDVPAH
Trigger: ATGAGCGGGTACATCCAGGAAGCCAGAGATATCCCACCCAAAATGTTCCATCACTTTCCCCAGAAGCTGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR-3UTR CAA 90 bp GTAGCTGCCTTTAGATACATCAGGAGAAGGCATCAGATCTCATTACAGATGGTTCAGGCTGAGGCAAGTTaGTGTCAGCGCTACAGAGTG +
Preference number: 3 (lower is better)
Translates to: VAAFRYIRRRHQISLQMVQAEAS*CQRYRV
Trigger: CACTCTGTAGCGCTGACACAAACTTGCCTCAGCCTG...AACCATCTGTAATGAGATCTGATGCCTTCTCCTGATGTATCTAAAGGCAGCTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR TCA 72 bp AGGAGGCAGCTCAAGCTACTTCCTGTGTGCAGAGAATaGTACATTAGTTCTTCCAAGGACACGTGGCAAATC +
Preference number: 3 (lower is better)
Translates to: RRQLKLLPVCRE*YISSSKDTWQI
Trigger: GATTTGCCACGTGTCCTTGGAAGAACTAATGTATCATTCTCTGCACACAGGAAGTAGCTTGAGCTGCCTCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR TCA 72 bp CAGTCAAGCAGTGGCAGAGGCTCTGCATTTCCAAGGTaGTCCACGGAATATTTTAGTTTGGCCAACATGCTT +
Preference number: 3 (lower is better)
Translates to: QSSSGRGSAFPR*STEYFSLANML
Trigger: AAGCATGTTGGCCAAACTAAAATATTCCGTGGATCACCTTGGAAATGCAGAGCCTCTGCCACTGCTTGACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR CAA 90 bp CAGAACCTACTCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGAACGGAATATTTTAGTTaGGCCAACATGCTTAGAGAA +
Preference number: 3 (lower is better)
Translates to: QNLLTRHPQGSRHAVPERTEYFS*ANMLRE
Trigger: TTCTCTAAGCATGTTGGCCAAACTAAAATATTCCGT...TCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGAGTAGGTTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR GCA 72 bp GAGTCTCTGTGGGATAAGTCTCCTGTAACTCAGGCTTaGTATGCAGCTATGGATAACCTTAAACTTCTGGTC +
Preference number: 3 (lower is better)
Translates to: ESLWDKSPVTQA*YAAMDNLKLLV
Trigger: GACCAGAAGTTTAAGGTTATCCATAGCTGCATAGCAAGCCTGAGTTACAGGAGACTTATCCCACAGAGACTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR CCA 72 bp TGCCTCAAATGTCCACCTGATAATAAACCTATGAGGTaGTGTCAAAACCAGGTGCGAATAATCCCATCAGGG +
Preference number: 3 (lower is better)
Translates to: CLKCPPDNKPMR*CQNQVRIIPSG
Trigger: CCCTGATGGGATTATTCGCACCTGGTTTTGACACCACCTCATAGGTTTATTATCAGGTGGACATTTGAGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR CCA 72 bp AGGCTTGCTATGCAGCTATGGATAACCTTAAACTTCTaGTCCTCCTGCTTCTACCTCCTAAGTGTTAGAGGA +
Preference number: 3 (lower is better)
Translates to: RLAMQLWITLNF*SSCFYLLSVRG
Trigger: TCCTCTAACACTTAGGAGGTAGAAGCAGGAGGACCAGAAGTTTAAGGTTATCCATAGCTGCATAGCAAGCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR CCA 72 bp ACTCTCCTTGATGAACATTTGGGAACTTTAAGTGGGTaGGTGGAAAAAGAGTGTGATCACAGATGGCCTGTC +
Preference number: 3 (lower is better)
Translates to: TLLDEHLGTLSG*VEKECDHRWPV
Trigger: GACAGGCCATCTGTGATCACACTCTTTTTCCACCCACCCACTTAAAGTTCCCAAATGTTCATCAAGGAGAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR-3UTR CAA 90 bp ACTGGTGTGCAGAACTCCCAGTTTGGCTACTTTTGTTATTTACTTCCTGAAATTGGCTCAAGGAACTGTTaGAAGACAGGGGAAGGAAGG +
Preference number: 3 (lower is better)
Translates to: TGVQNSQFGYFCYLLPEIGSRNC*KTGEGR
Trigger: CCTTCCTTCCCCTGTCTTCAAACAGTTCCTTGAGCC...AATTTCAGGAAGTAAATAACAAAAGTAGCCAAACTGGGAGTTCTGCACACCAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR TCA 72 bp CTTAAAGGGTGTTCATCCATTTTACTACTGAGTAACTaGCCAGGGCACACCAGGAGACATTCTCATGTTCAC +
Preference number: 3 (lower is better)
Translates to: LKGCSSILLLSN*PGHTRRHSHVH
Trigger: GTGAACATGAGAATGTCTCCTGGTGTGCCCTGGTCAGTTACTCAGTAGTAAAATGGATGAACACCCTTTAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR GCA 72 bp ATTATCAAACAGCCCTTTAATCATTCACTGAATTGTTaGAGCTTCTTCCTGGGAACCACAAGGCAGGGACTG +
Preference number: 3 (lower is better)
Translates to: IIKQPFNHSLNC*SFFLGTTRQGL
Trigger: CAGTCCCTGCCTTGTGGTTCCCAGGAAGAAGCTGCAACAATTCAGTGAATGATTAAAGGGCTGTTTGATAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR GCA 72 bp AAACCAAGTCCAACAGTATCAAACCTGCTTGATGTATaGCTCTGTGATAATAGAGAGAGGGTCCTGCCTCAT +
Preference number: 3 (lower is better)
Translates to: KPSPTVSNLLDV*LCDNRERVLPH
Trigger: ATGAGGCAGGACCCTCTCTCTATTATCACAGAGGCATACATCAAGCAGGTTTGATACTGTTGGACTTGGTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR TCA 72 bp CACTCTACCTCAGCTGGACACACGTACACTCATGGATaGGTATATGTAACTGTAATGTTGAACTTCAGGCAA +
Preference number: 3 (lower is better)
Translates to: HSTSAGHTYTHG*VYVTVMLNFRQ
Trigger: TTGCCTGAAGTTCAACATTACAGTTACATATACTCATCCATGAGTGTACGTGTGTCCAGCTGAGGTAGAGTG
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR GCA 72 bp CAAGGTGATCCACGGAATATTTTAGTTTGGCCAACATaGTTAGAGAAAAGACTAGCACAATGGCTCCATCCT +
Preference number: 3 (lower is better)
Translates to: QGDPRNILVWPT*LEKRLAQWLHP
Trigger: AGGATGGAGCCATTGTGCTAGTCTTTTCTCTAAGCATGTTGGCCAAACTAAAATATTCCGTGGATCACCTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR GCA 72 bp GATCTGCCCGAAGTTTTGTGTCTGAGTATGGACAAGTaGTGTCTGGTACTAACTCTATCTAGTAAGTCAAAG +
Preference number: 3 (lower is better)
Translates to: DLPEVLCLSMDK*CLVLTLSSKSK
Trigger: CTTTGACTTACTAGATAGAGTTAGTACCAGACAGCACTTGTCCATACTCAGACACAAAACTTCGGGCAGATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR GCA 72 bp ATGCAGCTATGGATAACCTTAAACTTCTGGTCCTCCTaGTTCTACCTCCTAAGTGTTAGAGGATTACAGGTA +
Preference number: 3 (lower is better)
Translates to: MQLWITLNFWSS*FYLLSVRGLQV
Trigger: TACCTGTAATCCTCTAACACTTAGGAGGTAGAAGCAGGAGGACCAGAAGTTTAAGGTTATCCATAGCTGCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR CCA 72 bp ATGTCACCTATTTTTCTGGCTACTAATCTTCTCCATTaGAGCCTAAATTTCTCCTCCTCAAGGCAGGGTACA +
Preference number: 3 (lower is better)
Translates to: MSPIFLATNLLH*SLNFSSSRQGT
Trigger: TGTACCCTGCCTTGAGGAGGAGAAATTTAGGCTCCAATGGAGAAGATTAGTAGCCAGAAAAATAGGTGACAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR-3UTR CAA 90 bp TCTATGTTGCTGCAGGGAATCTTTGCAAGGGTTCAGATTTGTAAGGGTTACCTGTCTCCAGCCCCGGTTTaGAAGTTTTTAATCAAAGTT +
Preference number: 3 (lower is better)
Translates to: SMLLQGIFARVQICKGYLSPAPV*KFLIKV
Trigger: AACTTTGATTAAAAACTTCAAAACCGGGGCTGGAGA...CAGGTAACCCTTACAAATCTGAACCCTTGCAAAGATTCCCTGCAGCAACATAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR-3UTR CAA 90 bp AATAAGAAATTCACTCTCCTTGATGAACATTTGGGAACTTTAAGTGGGTGGGTGTCTCTTACTGATCTTTaGTACTGCTGGTCTGAAGCC +
Preference number: 3 (lower is better)
Translates to: NKKFTLLDEHLGTLSGWVSLTDL*YCWSEA
Trigger: GGCTTCAGACCAGCAGTACAAAAGATCAGTAAGAGA...CACCCACCCACTTAAAGTTCCCAAATGTTCATCAAGGAGAGTGAATTTCTTATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR-3UTR CAA 90 bp GTAGCTGCCTTTAGATACATCAGGAGAAGGCATCAGATCTCATTACAGATGGTTGTGTCAGTATGTAAGTaGTTTGTTTCTTCCTGTCCT +
Preference number: 3 (lower is better)
Translates to: VAAFRYIRRRHQISLQMVVSVCK*FVSSCP
Trigger: AGGACAGGAAGAAACAAACAACTTACATACTGACAC...AACCATCTGTAATGAGATCTGATGCCTTCTCCTGATGTATCTAAAGGCAGCTAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR-3UTR CAA 90 bp ATTAATGCTGGCATTTCCTCTAAATTTTCTTCCAGTCCTTTTGAGACTAACAGCCTCCTTGATGAACATTaGGGAACTTTAAGTGGGTGG +
Preference number: 3 (lower is better)
Translates to: INAGISSKFSSSPFETNSLLDEH*GTLSGW
Trigger: CCACCCACTTAAAGTTCCCAAATGTTCATCAAGGAG...GCTGTTAGTCTCAAAAGGACTGGAAGAAAATTTAGAGGAAATGCCAGCATTAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
3UTR-3UTR CAA 90 bp GATAAGTCTCCTGTAACTCAGGCTTGCTATGCAGCTATGGATAACCTTAAACTTACGGAATATTTTAGTTaGGCCAACATGCTTAGAGAA +
Preference number: 3 (lower is better)
Translates to: DKSPVTQACYAAMDNLKLTEYFS*ANMLRE
Trigger: TTCTCTAAGCATGTTGGCCAAACTAAAATATTCCGT...AAGTTTAAGGTTATCCATAGCTGCATAGCAAGCCTGAGTTACAGGAGACTTATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR-3UTR CAA 90 bp AATAAGAAATTCACTCTCCTTGATGAACATTTGGGAACTTTAAGTGGGTGGGTGCTTTCTAGACTGGGATaGGACATAACAAAAATCACA +
Preference number: 3 (lower is better)
Translates to: NKKFTLLDEHLGTLSGWVLSRLG*DITKIT
Trigger: TGTGATTTTTGTTATGTCCAATCCCAGTCTAGAAAG...CACCCACCCACTTAAAGTTCCCAAATGTTCATCAAGGAGAGTGAATTTCTTATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR GCA 90 bp CCCACTAGACTGATGGGATGGGACCAGGGAGGCCAGGCTGTACTAAGCTGTCTGTGCAGCAGTTCTCGCTaGAGCAGGGGCAGGTTGGCC +
Preference number: 4 (lower is better)
Translates to: PTRLMGWDQGGQAVLSCLCSSSR*SRGRLA
Trigger: GGCCAACCTGCCCCTGCTGCAGCGAGAACTGCTGCA...CAGACAGCTTAGTACAGCCTGGCCTCCCTGGTCCCATCCCATCAGTCTAGTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR GCA 90 bp TCGGGACCTTTGGAAGAGCAGCCAGTGCTCTTACCCGCTGAGTCATGTCTCCAGTACTGGGACGGGGTCTaGTTGGCAGCCCGGGCACAG +
Preference number: 4 (lower is better)
Translates to: SGPLEEQPVLLPAESCLQYWDGV*LAARAQ
Trigger: CTGTGCCCGGGCTGCCAAGCAGACCCCGTCCCAGTA...CTGGAGACATGACTCAGCGGGTAAGAGCACTGGCTGCTCTTCCAAAGGTCCCGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR GCA 90 bp CCCACTAGACTGATGGGATGGGACCAGGGAGGCCAGGCTGTACTAAGCTGTCTGCTGGGCTGGGCACACTaGAGTCAGCAGACCTGGCTG +
Preference number: 4 (lower is better)
Translates to: PTRLMGWDQGGQAVLSCLLGWAH*SQQTWL
Trigger: CAGCCAGGTCTGCTGACTGCAGTGTGCCCAGCCCAG...CAGACAGCTTAGTACAGCCTGGCCTCCCTGGTCCCATCCCATCAGTCTAGTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CCA 90 bp GAGGAACCTCAGGAAAGCCATGGAGGAGGCAGCTCAAGCTACTTCCTGTGTGCAGGGACGGGGTCTGCTTaGCAGCCCGGGCACAGTGCA +
Preference number: 4 (lower is better)
Translates to: EEPQESHGGGSSSYFLCAGTGSA*QPGHSA
Trigger: TGCACTGTGCCCGGGCTGCCAAGCAGACCCCGTCCC...TGCACACAGGAAGTAGCTTGAGCTGCCTCCTCCATGGCTTTCCTGAGGTTCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CCA 90 bp GGATGGGACCAGGGAGGCCAGGCTGTACTAAGCTGTCTGGCAAACAGTGGGTCTTGGCCACAGAGGCGGTaGTGCCGCTCCCAGTCCTTA +
Preference number: 4 (lower is better)
Translates to: GWDQGGQAVLSCLANSGSWPQRR*CRSQSL
Trigger: TAAGGACTGGGAGCGGCACCACCGCCTCTGTGGCCA...AGACCCACTGTTTGCCAGACAGCTTAGTACAGCCTGGCCTCCCTGGTCCCATCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CCA 90 bp GGATGGGACCAGGGAGGCCAGGCTGTACTAAGCTGTCTGGCAAACAGTGGGTCTTGTCCAGGGCTGGGCTaGGCACACTGCAGTCAGCAG +
Preference number: 4 (lower is better)
Translates to: GWDQGGQAVLSCLANSGSCPGLG*AHCSQQ
Trigger: CTGCTGACTGCAGTGTGCCCAGCCCAGCCCTGGACA...AGACCCACTGTTTGCCAGACAGCTTAGTACAGCCTGGCCTCCCTGGTCCCATCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CCA 90 bp GGATGGGACCAGGGAGGCCAGGCTGTACTAAGCTGTCTGGCAAACAGTGGGTCTGGCCTGCTCTGGCTGTaGGGACTGTGGCCATGTAGA +
Preference number: 4 (lower is better)
Translates to: GWDQGGQAVLSCLANSGSGLLWL*GLWPCR
Trigger: TCTACATGGCCACAGTCCCCACAGCCAGAGCAGGCC...AGACCCACTGTTTGCCAGACAGCTTAGTACAGCCTGGCCTCCCTGGTCCCATCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CCA 90 bp GAGGAACCTCAGGAAAGCCATGGAGGAGGCAGCTCAAGCTACTTCCTGTGTGCATGCAGTCAGCAGACCTaGCTGAGCCCCGCCCTCCAG +
Preference number: 4 (lower is better)
Translates to: EEPQESHGGGSSSYFLCACSQQT*LSPALQ
Trigger: CTGGAGGGCGGGGCTCAGCCAGGTCTGCTGACTGCA...TGCACACAGGAAGTAGCTTGAGCTGCCTCCTCCATGGCTTTCCTGAGGTTCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR GCA 90 bp CCCACTAGACTGATGGGATGGGACCAGGGAGGCCAGGCTGTACTAAGCTGTCTGAGCAGAAGGTGCTCATaGTGGGCCAGGTACTGGGAC +
Preference number: 4 (lower is better)
Translates to: PTRLMGWDQGGQAVLSCLSRRCS*WARYWD
Trigger: GTCCCAGTACCTGGCCCAGCATGAGCACCTTCTGCT...CAGACAGCTTAGTACAGCCTGGCCTCCCTGGTCCCATCCCATCAGTCTAGTGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR GCA 90 bp CCCACTAGACTGATGGGATGGGACCAGGGAGGCCAGGCTGTACTAAGCTGTCTGCTCCCAGGGCTGTGCTaGCTAGAGACCAACTCAGTC +
Preference number: 4 (lower is better)
Translates to: PTRLMGWDQGGQAVLSCLLPGLC*LETNSV
Trigger: GACTGAGTTGGTCTCTAGGCAGCACAGCCCTGGGAG...CAGACAGCTTAGTACAGCCTGGCCTCCCTGGTCCCATCCCATCAGTCTAGTGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CCA 90 bp GGACCTTTGGAAGAGCAGCCAGTGCTCTTACCCGCTGAGTCATGTCTCCAGCCCTTCTCACAACCAAGTTaGAAGGCGGCCGCTCCAGGG +
Preference number: 4 (lower is better)
Translates to: GPLEEQPVLLPAESCLQPFSQPS*KAAAPG
Trigger: CCCTGGAGCGGCCGCCTTCCAACTTGGTTGTGAGAA...GGGCTGGAGACATGACTCAGCGGGTAAGAGCACTGGCTGCTCTTCCAAAGGTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR CCA 90 bp CCCACTAGACTGATGGGATGGGACCAGGGAGGCCAGGCTGTACTAAGCTGTCTGTCTCTGTGGTGGCGATaGGGCACCATTCAGGGTAGG +
Preference number: 4 (lower is better)
Translates to: PTRLMGWDQGGQAVLSCLSLWWR*GTIQGR
Trigger: CCTACCCTGAATGGTGCCCCATCGCCACCACAGAGA...CAGACAGCTTAGTACAGCCTGGCCTCCCTGGTCCCATCCCATCAGTCTAGTGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CCA 90 bp GGACCTTTGGAAGAGCAGCCAGTGCTCTTACCCGCTGAGTCATGTCTCCAGCCCTCTCTGTGGTGGCGATaGGGCACCATTCAGGGTAGG +
Preference number: 4 (lower is better)
Translates to: GPLEEQPVLLPAESCLQPSLWWR*GTIQGR
Trigger: CCTACCCTGAATGGTGCCCCATCGCCACCACAGAGA...GGGCTGGAGACATGACTCAGCGGGTAAGAGCACTGGCTGCTCTTCCAAAGGTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR CCA 90 bp GGATGGGACCAGGGAGGCCAGGCTGTACTAAGCTGTCTGGCAAACAGTGGGTCTGGTGGTGGAGTAGGATaGAACTGGCCCCCAGGATTC +
Preference number: 4 (lower is better)
Translates to: GWDQGGQAVLSCLANSGSGGGVG*NWPPGF
Trigger: GAATCCTGGGGGCCAGTTCCATCCTACTCCACCACC...AGACCCACTGTTTGCCAGACAGCTTAGTACAGCCTGGCCTCCCTGGTCCCATCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CCA 90 bp TCCTGCGGGTGGCTTCACATTCATCACCCGCCTCTGCAAACCATGCTTGCAGGATGGCCATGTAGACTCTaGCCACAGAGGCGGTGGTGC +
Preference number: 4 (lower is better)
Translates to: SCGWLHIHHPPLQTMLAGWPCRL*PQRRWC
Trigger: GCACCACCGCCTCTGTGGCCAGAGTCTACATGGCCA...TCCTGCAAGCATGGTTTGCAGAGGCGGGTGATGAATGTGAAGCCACCCGCAGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CCA 90 bp GAGGAACCTCAGGAAAGCCATGGAGGAGGCAGCTCAAGCTACTTCCTGTGTGCAAGCAGTGGCCTGCTCTaGCTGTGGGGACTGTGGCCA +
Preference number: 4 (lower is better)
Translates to: EEPQESHGGGSSSYFLCASSGLL*LWGLWP
Trigger: TGGCCACAGTCCCCACAGCCAGAGCAGGCCACTGCT...TGCACACAGGAAGTAGCTTGAGCTGCCTCCTCCATGGCTTTCCTGAGGTTCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR TCA 90 bp GGATGGGACCAGGGAGGCCAGGCTGTACTAAGCTGTCTGGCAAACAGTGGGTCTAGCGTTTCAACTTGCTaGGCTGCCGAGCACCACAAG +
Preference number: 4 (lower is better)
Translates to: GWDQGGQAVLSCLANSGSSVSTC*AAEHHK
Trigger: CTTGTGGTGCTCGGCAGCTCAGCAAGTTGAAACGCT...AGACCCACTGTTTGCCAGACAGCTTAGTACAGCCTGGCCTCCCTGGTCCCATCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR TCA 90 bp TCCTGCGGGTGGCTTCACATTCATCACCCGCCTCTGCAAACCATGCTTGCAGGACTGCAGCCTGCCGTTTaGCATCCGCTATGGTCTGCT +
Preference number: 4 (lower is better)
Translates to: SCGWLHIHHPPLQTMLAGLQPAV*HPLWSA
Trigger: AGCAGACCATAGCGGATGTCAAACGGCAGGCTGCAG...TCCTGCAAGCATGGTTTGCAGAGGCGGGTGATGAATGTGAAGCCACCCGCAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR GCA 90 bp GGGTGGATATGGGGCTCAAGGAACTGTTTGAAGACAGGGGAAGGAAGGGCCTCCAGCAGAAGGTGCTCATaGTGGGCCAGGTACTGGGAC +
Preference number: 4 (lower is better)
Translates to: GWIWGSRNCLKTGEGRASSRRCS*WARYWD
Trigger: GTCCCAGTACCTGGCCCAGCATGAGCACCTTCTGCT...GGAGGCCCTTCCTTCCCCTGTCTTCAAACAGTTCCTTGAGCCCCATATCCACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CCA 90 bp GGGTGGATATGGGGCTCAAGGAACTGTTTGAAGACAGGGGAAGGAAGGGCCTCCTTCTCACAACCAAGTTaGAAGGCGGCCGCTCCAGGG +
Preference number: 4 (lower is better)
Translates to: GWIWGSRNCLKTGEGRASFSQPS*KAAAPG
Trigger: CCCTGGAGCGGCCGCCTTCCAACTTGGTTGTGAGAA...GGAGGCCCTTCCTTCCCCTGTCTTCAAACAGTTCCTTGAGCCCCATATCCACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CCA 90 bp GGATGGGACCAGGGAGGCCAGGCTGTACTAAGCTGTCTGGCAAACAGTGGGTCTTTAGTGCTGACGATGTaGAGGAGGCAGGCCCATTGC +
Preference number: 4 (lower is better)
Translates to: GWDQGGQAVLSCLANSGSLVLTM*RRQAHC
Trigger: GCAATGGGCCTGCCTCCTCCACATCGTCAGCACTAA...AGACCCACTGTTTGCCAGACAGCTTAGTACAGCCTGGCCTCCCTGGTCCCATCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CCA 90 bp GGGTGGATATGGGGCTCAAGGAACTGTTTGAAGACAGGGGAAGGAAGGGCCTCCGGTGGTGGAGTAGGATaGAACTGGCCCCCAGGATTC +
Preference number: 4 (lower is better)
Translates to: GWIWGSRNCLKTGEGRASGGGVG*NWPPGF
Trigger: GAATCCTGGGGGCCAGTTCCATCCTACTCCACCACC...GGAGGCCCTTCCTTCCCCTGTCTTCAAACAGTTCCTTGAGCCCCATATCCACCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CCA 90 bp GGGTGGATATGGGGCTCAAGGAACTGTTTGAAGACAGGGGAAGGAAGGGCCTCCTGGCTGTGGGGACTGTaGCCATGTAGACTCTGGCCA +
Preference number: 4 (lower is better)
Translates to: GWIWGSRNCLKTGEGRASWLWGL*PCRLWP
Trigger: TGGCCAGAGTCTACATGGCCACAGTCCCCACAGCCA...GGAGGCCCTTCCTTCCCCTGTCTTCAAACAGTTCCTTGAGCCCCATATCCACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CCA 90 bp GAGGAACCTCAGGAAAGCCATGGAGGAGGCAGCTCAAGCTACTTCCTGTGTGCAGGCCTGCTCTGGCTGTaGGGACTGTGGCCATGTAGA +
Preference number: 4 (lower is better)
Translates to: EEPQESHGGGSSSYFLCAGLLWL*GLWPCR
Trigger: TCTACATGGCCACAGTCCCCACAGCCAGAGCAGGCC...TGCACACAGGAAGTAGCTTGAGCTGCCTCCTCCATGGCTTTCCTGAGGTTCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR GCA 90 bp CCTGCCTCATCCCCTAAAGAAGGAATTCTGCAGCACAGCCAAAACCACCAATGCTGCAGCAGTTCTCGCTaGAGCAGGGGCAGGTTGGCC +
Preference number: 4 (lower is better)
Translates to: PASSPKEGILQHSQNHQCCSSSR*SRGRLA
Trigger: GGCCAACCTGCCCCTGCTGCAGCGAGAACTGCTGCA...GCATTGGTGGTTTTGGCTGTGCTGCAGAATTCCTTCTTTAGGGGATGAGGCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR GCA 90 bp CAGAACCTACTCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGATGCAGCAGTTCTCGCTaGAGCAGGGGCAGGTTGGCC +
Preference number: 4 (lower is better)
Translates to: QNLLTRHPQGSRHAVPERCSSSR*SRGRLA
Trigger: GGCCAACCTGCCCCTGCTGCAGCGAGAACTGCTGCA...TCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGAGTAGGTTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR GCA 90 bp TCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGAAGGACACATATACTGGGACGGGGTCTaGTTGGCAGCCCGGGCACAG +
Preference number: 4 (lower is better)
Translates to: SQDIPKDPDMQSQREGHIYWDGV*LAARAQ
Trigger: CTGTGCCCGGGCTGCCAAGCAGACCCCGTCCCAGTA...TATGTGTCCTTCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR GCA 90 bp GGATGGGACCAGGGAGGCCAGGCTGTACTAAGCTGTCTGGCAAACAGTGGGTCTACATCCGCTATGGTCTaGTCCATTCGAGCTCTCTCC +
Preference number: 4 (lower is better)
Translates to: GWDQGGQAVLSCLANSGSTSAMV*SIRALS
Trigger: GGAGAGAGCTCGAATGGAGCAGACCATAGCGGATGT...AGACCCACTGTTTGCCAGACAGCTTAGTACAGCCTGGCCTCCCTGGTCCCATCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR GCA 90 bp CCCACTAGACTGATGGGATGGGACCAGGGAGGCCAGGCTGTACTAAGCTGTCTGGCATCTTCTGCAGCCTaGCGTTTGACATCCGCTATG +
Preference number: 4 (lower is better)
Translates to: PTRLMGWDQGGQAVLSCLASSAA*RLTSAM
Trigger: CATAGCGGATGTCAAACGGCAGGCTGCAGAAGATGC...CAGACAGCTTAGTACAGCCTGGCCTCCCTGGTCCCATCCCATCAGTCTAGTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CCA 90 bp GGACCTTTGGAAGAGCAGCCAGTGCTCTTACCCGCTGAGTCATGTCTCCAGCCCTCCAGGATTTATTGGTaGGAGGGGTGGCATGATGGG +
Preference number: 4 (lower is better)
Translates to: GPLEEQPVLLPAESCLQPSRIYW*EGWHDG
Trigger: CCCATCATGCCACCCCTCCCACCAATAAATCCTGGA...GGGCTGGAGACATGACTCAGCGGGTAAGAGCACTGGCTGCTCTTCCAAAGGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR CCA 90 bp AAAGTGATGGAACATTTTGGGTGGGATATCTCTGGCTTCCTGGATGTACCCGCTGGGACGGGGTCTGCTTaGCAGCCCGGGCACAGTGCA +
Preference number: 4 (lower is better)
Translates to: KVMEHFGWDISGFLDVPAGTGSA*QPGHSA
Trigger: TGCACTGTGCCCGGGCTGCCAAGCAGACCCCGTCCC...AGCGGGTACATCCAGGAAGCCAGAGATATCCCACCCAAAATGTTCCATCACTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR CCA 90 bp AACCCACAATCCTGTCTGCAGTTTTCAGAACGAAGGCCATCTGCTCACTCCTTAGGGACGGGGTCTGCTTaGCAGCCCGGGCACAGTGCA +
Preference number: 4 (lower is better)
Translates to: NPQSCLQFSERRPSAHSLGTGSA*QPGHSA
Trigger: TGCACTGTGCCCGGGCTGCCAAGCAGACCCCGTCCC...TAAGGAGTGAGCAGATGGCCTTCGTTCTGAAAACTGCAGACAGGATTGTGGGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CCA 90 bp CCCACTAGACTGATGGGATGGGACCAGGGAGGCCAGGCTGTACTAAGCTGTCTGCCCTCCTTTCCGGACTaGGCCTCTTTCCATTTCCAT +
Preference number: 4 (lower is better)
Translates to: PTRLMGWDQGGQAVLSCLPSFPD*ASFHFH
Trigger: ATGGAAATGGAAAGAGGCCCAGTCCGGAAAGGAGGG...CAGACAGCTTAGTACAGCCTGGCCTCCCTGGTCCCATCCCATCAGTCTAGTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CCA 90 bp GGACCTTTGGAAGAGCAGCCAGTGCTCTTACCCGCTGAGTCATGTCTCCAGCCCCCCTCCTTTCCGGACTaGGCCTCTTTCCATTTCCAT +
Preference number: 4 (lower is better)
Translates to: GPLEEQPVLLPAESCLQPPSFPD*ASFHFH
Trigger: ATGGAAATGGAAAGAGGCCCAGTCCGGAAAGGAGGG...GGGCTGGAGACATGACTCAGCGGGTAAGAGCACTGGCTGCTCTTCCAAAGGTCC
57% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR CCA 90 bp GGATGGGACCAGGGAGGCCAGGCTGTACTAAGCTGTCTGGCAAACAGTGGGTCTCCCTCCTTTCCGGACTaGGCCTCTTTCCATTTCCAT +
Preference number: 4 (lower is better)
Translates to: GWDQGGQAVLSCLANSGSPSFPD*ASFHFH
Trigger: ATGGAAATGGAAAGAGGCCCAGTCCGGAAAGGAGGG...AGACCCACTGTTTGCCAGACAGCTTAGTACAGCCTGGCCTCCCTGGTCCCATCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CCA 90 bp TACTCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGAAGGACACGGTCTTGTCCAGGGCTaGGCTGGGCACACTGCAGTC +
Preference number: 4 (lower is better)
Translates to: YSQDIPKDPDMQSQREGHGLVQG*AGHTAV
Trigger: GACTGCAGTGTGCCCAGCCCAGCCCTGGACAAGACC...GTGTCCTTCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGAGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR TCA 90 bp GGATGGGACCAGGGAGGCCAGGCTGTACTAAGCTGTCTGGCAAACAGTGGGTCTCTCGCCGATCTCAGGTaGGATATCATTGCCAAACTG +
Preference number: 4 (lower is better)
Translates to: GWDQGGQAVLSCLANSGSLADLR*DIIAKL
Trigger: CAGTTTGGCAATGATATCTCACCTGAGATCGGCGAG...AGACCCACTGTTTGCCAGACAGCTTAGTACAGCCTGGCCTCCCTGGTCCCATCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR GCA 90 bp TCCTGCGGGTGGCTTCACATTCATCACCCGCCTCTGCAAACCATGCTTGCAGGAAGGCGATCCAGGCATTaGTGGCACCCTTTTCTCACA +
Preference number: 4 (lower is better)
Translates to: SCGWLHIHHPPLQTMLAGRRSRH*WHPFLT
Trigger: TGTGAGAAAAGGGTGCCAGCAATGCCTGGATCGCCT...TCCTGCAAGCATGGTTTGCAGAGGCGGGTGATGAATGTGAAGCCACCCGCAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR GCA 90 bp TCGGGACCTTTGGAAGAGCAGCCAGTGCTCTTACCCGCTGAGTCATGTCTCCAGTTCAACTTGCTGAGCTaGCGAGCACCACAAGTAGCC +
Preference number: 4 (lower is better)
Translates to: SGPLEEQPVLLPAESCLQFNLLS*RAPQVA
Trigger: GGCTACTTGTGGTGCTCGGCAGCTCAGCAAGTTGAA...CTGGAGACATGACTCAGCGGGTAAGAGCACTGGCTGCTCTTCCAAAGGTCCCGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR GCA 90 bp CCTTTGGAAGAGCAGCCAGTGCTCTTACCCGCTGAGTCATGTCTCCAGCCCCGGCAGGTGAGATATCATTaGCAAACTGCTGCAGAGTGG +
Preference number: 4 (lower is better)
Translates to: PLEEQPVLLPAESCLQPRQVRYH*QTAAEW
Trigger: CCACTCTGCAGCAGTTTGGCAATGATATCTCACCTG...CCGGGGCTGGAGACATGACTCAGCGGGTAAGAGCACTGGCTGCTCTTCCAAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR GCA 90 bp GGGTGGATATGGGGCTCAAGGAACTGTTTGAAGACAGGGGAAGGAAGGGCCTCCACATCCGCTATGGTCTaGTCCATTCGAGCTCTCTCC +
Preference number: 4 (lower is better)
Translates to: GWIWGSRNCLKTGEGRASTSAMV*SIRALS
Trigger: GGAGAGAGCTCGAATGGAGCAGACCATAGCGGATGT...GGAGGCCCTTCCTTCCCCTGTCTTCAAACAGTTCCTTGAGCCCCATATCCACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR GCA 90 bp TCCTGCGGGTGGCTTCACATTCATCACCCGCCTCTGCAAACCATGCTTGCAGGAGCATCTTCTGCAGCCTaGCGTTTGACATCCGCTATG +
Preference number: 4 (lower is better)
Translates to: SCGWLHIHHPPLQTMLAGASSAA*RLTSAM
Trigger: CATAGCGGATGTCAAACGGCAGGCTGCAGAAGATGC...TCCTGCAAGCATGGTTTGCAGAGGCGGGTGATGAATGTGAAGCCACCCGCAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR GCA 90 bp GGATGGGACCAGGGAGGCCAGGCTGTACTAAGCTGTCTGGCAAACAGTGGGTCTCAGGAAAGCATCTTCTaGAGCCTGCCGTTTGACATC +
Preference number: 4 (lower is better)
Translates to: GWDQGGQAVLSCLANSGSQESIF*SLPFDI
Trigger: GATGTCAAACGGCAGGCTGCAGAAGATGCTTTCCTG...AGACCCACTGTTTGCCAGACAGCTTAGTACAGCCTGGCCTCCCTGGTCCCATCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR GCA 90 bp GGGTGGATATGGGGCTCAAGGAACTGTTTGAAGACAGGGGAAGGAAGGGCCTCCAGTAGCGAGCAATGTTaGAGCCACTGCACGTCTCAC +
Preference number: 4 (lower is better)
Translates to: GWIWGSRNCLKTGEGRASSSEQC*SHCTSH
Trigger: GTGAGACGTGCAGTGGCTGCAACATTGCTCGCTACT...GGAGGCCCTTCCTTCCCCTGTCTTCAAACAGTTCCTTGAGCCCCATATCCACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR GCA 90 bp TCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGAAGGACACATACTGGGCTGGGCACACTaGAGTCAGCAGACCTGGCTG +
Preference number: 4 (lower is better)
Translates to: SQDIPKDPDMQSQREGHILGWAH*SQQTWL
Trigger: CAGCCAGGTCTGCTGACTGCAGTGTGCCCAGCCCAG...TATGTGTCCTTCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CCA 90 bp TCCTGCGGGTGGCTTCACATTCATCACCCGCCTCTGCAAACCATGCTTGCAGGACGATCCAGGCATTGCTaGCACCCTTTTCTCACAACC +
Preference number: 4 (lower is better)
Translates to: SCGWLHIHHPPLQTMLAGRSRHC*HPFLTT
Trigger: GGTTGTGAGAAAAGGGTGCCAGCAATGCCTGGATCG...TCCTGCAAGCATGGTTTGCAGAGGCGGGTGATGAATGTGAAGCCACCCGCAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CCA 90 bp GGATGGGACCAGGGAGGCCAGGCTGTACTAAGCTGTCTGGCAAACAGTGGGTCTATTGCTGAATCTCTGTaGTGGCGATGGGGCACCATT +
Preference number: 4 (lower is better)
Translates to: GWDQGGQAVLSCLANSGSIAESL*WRWGTI
Trigger: AATGGTGCCCCATCGCCACCACAGAGATTCAGCAAT...AGACCCACTGTTTGCCAGACAGCTTAGTACAGCCTGGCCTCCCTGGTCCCATCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CCA 90 bp ACCTGGGTAGGACACAGAAGCAAAGCAGTCCCCAACAGCACTATAGAAACTCAGTGGCCACAGAGGCGGTaGTGCCGCTCCCAGTCCTTA +
Preference number: 4 (lower is better)
Translates to: TWVGHRSKAVPNSTIETQWPQRR*CRSQSL
Trigger: TAAGGACTGGGAGCGGCACCACCGCCTCTGTGGCCA...CTGAGTTTCTATAGTGCTGTTGGGGACTGCTTTGCTTCTGTGTCCTACCCAGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CCA 90 bp TACTCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGAAGGACACGGCCTGCTCTGGCTGTaGGGACTGTGGCCATGTAGA +
Preference number: 4 (lower is better)
Translates to: YSQDIPKDPDMQSQREGHGLLWL*GLWPCR
Trigger: TCTACATGGCCACAGTCCCCACAGCCAGAGCAGGCC...GTGTCCTTCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGAGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CCA 90 bp GTGGCAGAGGCTCTGCATTTCCAAGGTGATCCACGGAATATTTTAGTTTGGCCATGCAGTCAGCAGACCTaGCTGAGCCCCGCCCTCCAG +
Preference number: 4 (lower is better)
Translates to: VAEALHFQGDPRNILVWPCSQQT*LSPALQ
Trigger: CTGGAGGGCGGGGCTCAGCCAGGTCTGCTGACTGCA...TGGCCAAACTAAAATATTCCGTGGATCACCTTGGAAATGCAGAGCCTCTGCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CCA 90 bp TCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGAAGGACACATAGGTCTTGTCCAGGGCTaGGCTGGGCACACTGCAGTC +
Preference number: 4 (lower is better)
Translates to: SQDIPKDPDMQSQREGHIGLVQG*AGHTAV
Trigger: GACTGCAGTGTGCCCAGCCCAGCCCTGGACAAGACC...TATGTGTCCTTCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR TCA 90 bp TCCTGCGGGTGGCTTCACATTCATCACCCGCCTCTGCAAACCATGCTTGCAGGAGGGGCAGGTTGGCCTTaGGAAATGGAATCACAAATG +
Preference number: 4 (lower is better)
Translates to: SCGWLHIHHPPLQTMLAGGAGWP*EMESQM
Trigger: CATTTGTGATTCCATTTCTCAAGGCCAACCTGCCCC...TCCTGCAAGCATGGTTTGCAGAGGCGGGTGATGAATGTGAAGCCACCCGCAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR TCA 90 bp CCTTTGGAAGAGCAGCCAGTGCTCTTACCCGCTGAGTCATGTCTCCAGCCCCGGGCCGTTTCCAATAGTTaGGTTCTTCACGGTCAGATT +
Preference number: 4 (lower is better)
Translates to: PLEEQPVLLPAESCLQPRAVSNS*VLHGQI
Trigger: AATCTGACCGTGAAGAACTCAACTATTGGAAACGGC...CCGGGGCTGGAGACATGACTCAGCGGGTAAGAGCACTGGCTGCTCTTCCAAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR TCA 90 bp TACTCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGAAGGACACCTGCAGCCTGCCGTTTaGCATCCGCTATGGTCTGCT +
Preference number: 4 (lower is better)
Translates to: YSQDIPKDPDMQSQREGHLQPAV*HPLWSA
Trigger: AGCAGACCATAGCGGATGTCAAACGGCAGGCTGCAG...GTGTCCTTCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGAGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR GCA 90 bp AACCCACAATCCTGTCTGCAGTTTTCAGAACGAAGGCCATCTGCTCACTCCTTACTGGGCTGGGCACACTaGAGTCAGCAGACCTGGCTG +
Preference number: 4 (lower is better)
Translates to: NPQSCLQFSERRPSAHSLLGWAH*SQQTWL
Trigger: CAGCCAGGTCTGCTGACTGCAGTGTGCCCAGCCCAG...TAAGGAGTGAGCAGATGGCCTTCGTTCTGAAAACTGCAGACAGGATTGTGGGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CCA 90 bp TCCTGCGGGTGGCTTCACATTCATCACCCGCCTCTGCAAACCATGCTTGCAGGAATTGCTGAATCTCTGTaGTGGCGATGGGGCACCATT +
Preference number: 4 (lower is better)
Translates to: SCGWLHIHHPPLQTMLAGIAESL*WRWGTI
Trigger: AATGGTGCCCCATCGCCACCACAGAGATTCAGCAAT...TCCTGCAAGCATGGTTTGCAGAGGCGGGTGATGAATGTGAAGCCACCCGCAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CCA 90 bp AACCCACAATCCTGTCTGCAGTTTTCAGAACGAAGGCCATCTGCTCACTCCTTAAGCAGTGGCCTGCTCTaGCTGTGGGGACTGTGGCCA +
Preference number: 4 (lower is better)
Translates to: NPQSCLQFSERRPSAHSLSSGLL*LWGLWP
Trigger: TGGCCACAGTCCCCACAGCCAGAGCAGGCCACTGCT...TAAGGAGTGAGCAGATGGCCTTCGTTCTGAAAACTGCAGACAGGATTGTGGGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR CAA 72 bp CACGTGGCAAATCCCAGAGAAGCTGTGGAGTGCCTCTaGGATGCTTCCTGCCAACTTCACTTCTTGCTGACG +
Preference number: 4 (lower is better)
Translates to: HVANPREAVECL*DASCQLHFLLT
Trigger: CGTCAGCAAGAAGTGAAGTTGGCAGGAAGCATCCAAGAGGCACTCCACAGCTTCTCTGGGATTTGCCACGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR CAA 72 bp ACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATaGAACTCGGGACCTTTGGAAGAGCAGCCAGTGCTC +
Preference number: 4 (lower is better)
Translates to: TDGCEPPCGCWE*NSGPLEEQPVL
Trigger: GAGCACTGGCTGCTCTTCCAAAGGTCCCGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR TCA 90 bp CCCACTAGACTGATGGGATGGGACCAGGGAGGCCAGGCTGTACTAAGCTGTCTGCTCTTTCCATTTCCATaGACCTCCATGAGCAGTTCA +
Preference number: 4 (lower is better)
Translates to: PTRLMGWDQGGQAVLSCLLFPFP*TSMSSS
Trigger: TGAACTGCTCATGGAGGTTCATGGAAATGGAAAGAG...CAGACAGCTTAGTACAGCCTGGCCTCCCTGGTCCCATCCCATCAGTCTAGTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR TCA 90 bp TCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGAAGGACACATACTGCAGCCTGCCGTTTaGCATCCGCTATGGTCTGCT +
Preference number: 4 (lower is better)
Translates to: SQDIPKDPDMQSQREGHILQPAV*HPLWSA
Trigger: AGCAGACCATAGCGGATGTCAAACGGCAGGCTGCAG...TATGTGTCCTTCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR GCA 90 bp TCCTGCGGGTGGCTTCACATTCATCACCCGCCTCTGCAAACCATGCTTGCAGGACAGGTGAGATATCATTaGCAAACTGCTGCAGAGTGG +
Preference number: 4 (lower is better)
Translates to: SCGWLHIHHPPLQTMLAGQVRYH*QTAAEW
Trigger: CCACTCTGCAGCAGTTTGGCAATGATATCTCACCTG...TCCTGCAAGCATGGTTTGCAGAGGCGGGTGATGAATGTGAAGCCACCCGCAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR GCA 90 bp GGATGGGACCAGGGAGGCCAGGCTGTACTAAGCTGTCTGGCAAACAGTGGGTCTTGGCCTCCTGGAGCTTaGAATGGAATTCTTCAATTG +
Preference number: 4 (lower is better)
Translates to: GWDQGGQAVLSCLANSGSWPPGA*NGILQL
Trigger: CAATTGAAGAATTCCATTGCAAGCTCCAGGAGGCCA...AGACCCACTGTTTGCCAGACAGCTTAGTACAGCCTGGCCTCCCTGGTCCCATCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR GCA 90 bp GAGGAACCTCAGGAAAGCCATGGAGGAGGCAGCTCAAGCTACTTCCTGTGTGCAAGAGTCAGCAGGAGATaGGATACTGGTGTTGAGCAG +
Preference number: 4 (lower is better)
Translates to: EEPQESHGGGSSSYFLCARVSRR*DTGVEQ
Trigger: CTGCTCAACACCAGTATCGCATCTCCTGCTGACTCT...TGCACACAGGAAGTAGCTTGAGCTGCCTCCTCCATGGCTTTCCTGAGGTTCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR GCA 90 bp ACCTGGGTAGGACACAGAAGCAAAGCAGTCCCCAACAGCACTATAGAAACTCAGCTCCCAGGGCTGTGCTaGCTAGAGACCAACTCAGTC +
Preference number: 4 (lower is better)
Translates to: TWVGHRSKAVPNSTIETQLPGLC*LETNSV
Trigger: GACTGAGTTGGTCTCTAGGCAGCACAGCCCTGGGAG...CTGAGTTTCTATAGTGCTGTTGGGGACTGCTTTGCTTCTGTGTCCTACCCAGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR GCA 90 bp CAGAACCTACTCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGAGTACTCCCAGGGCTGTaGTGCCTAGAGACCAACTCA +
Preference number: 4 (lower is better)
Translates to: QNLLTRHPQGSRHAVPERVLPGL*CLETNS
Trigger: TGAGTTGGTCTCTAGGCAGCACAGCCCTGGGAGTAC...TCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGAGTAGGTTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR GCA 90 bp TCCTGCGGGTGGCTTCACATTCATCACCCGCCTCTGCAAACCATGCTTGCAGGAACTTCAAAGGCTTTTTaGTCTGCCTCAGCTACAGCC +
Preference number: 4 (lower is better)
Translates to: SCGWLHIHHPPLQTMLAGTSKAF*SASATA
Trigger: GGCTGTAGCTGAGGCAGAGCAAAAAGCCTTTGAAGT...TCCTGCAAGCATGGTTTGCAGAGGCGGGTGATGAATGTGAAGCCACCCGCAGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR GCA 90 bp CCCACTAGACTGATGGGATGGGACCAGGGAGGCCAGGCTGTACTAAGCTGTCTGTCGAGCTCTCTCCGTTaGAATCACTTCAAAGGCTTT +
Preference number: 4 (lower is better)
Translates to: PTRLMGWDQGGQAVLSCLSSSLR*NHFKGF
Trigger: AAAGCCTTTGAAGTGATTGCAACGGAGAGAGCTCGA...CAGACAGCTTAGTACAGCCTGGCCTCCCTGGTCCCATCCCATCAGTCTAGTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CCA 90 bp CCTGCCTCATCCCCTAAAGAAGGAATTCTGCAGCACAGCCAAAACCACCAATGCGTGCTGAAGAGGTGGTaGAGTAGGATGGAACTGGCC +
Preference number: 4 (lower is better)
Translates to: PASSPKEGILQHSQNHQCVLKRW*SRMELA
Trigger: GGCCAGTTCCATCCTACTCCACCACCTCTTCAGCAC...GCATTGGTGGTTTTGGCTGTGCTGCAGAATTCCTTCTTTAGGGGATGAGGCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR CCA 90 bp GTGGCAGAGGCTCTGCATTTCCAAGGTGATCCACGGAATATTTTAGTTTGGCCATGGCCATGTAGACTCTaGCCACAGAGGCGGTGGTGC +
Preference number: 4 (lower is better)
Translates to: VAEALHFQGDPRNILVWPWPCRL*PQRRWC
Trigger: GCACCACCGCCTCTGTGGCCAGAGTCTACATGGCCA...TGGCCAAACTAAAATATTCCGTGGATCACCTTGGAAATGCAGAGCCTCTGCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR TCA 90 bp GGTGGGTGGAAAAAGAGTGTGATCACAGATGGCCTGTCATTCAGCTGTGCCTTTAGCGTTTCAACTTGCTaGGCTGCCGAGCACCACAAG +
Preference number: 4 (lower is better)
Translates to: GGWKKSVITDGLSFSCAFSVSTC*AAEHHK
Trigger: CTTGTGGTGCTCGGCAGCTCAGCAAGTTGAAACGCT...AAAGGCACAGCTGAATGACAGGCCATCTGTGATCACACTCTTTTTCCACCCACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR TCA 90 bp GAGGAACCTCAGGAAAGCCATGGAGGAGGCAGCTCAAGCTACTTCCTGTGTGCAGGTTCCCGATACAGGTaGGAAGTTGCAATGTCTTCT +
Preference number: 4 (lower is better)
Translates to: EEPQESHGGGSSSYFLCAGSRYR*EVAMSS
Trigger: AGAAGACATTGCAACTTCTCACCTGTATCGGGAACC...TGCACACAGGAAGTAGCTTGAGCTGCCTCCTCCATGGCTTTCCTGAGGTTCCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR TCA 90 bp CCCACTAGACTGATGGGATGGGACCAGGGAGGCCAGGCTGTACTAAGCTGTCTGCCTCCATTGAGACCTTaGGAAATGGAATCACAAATG +
Preference number: 4 (lower is better)
Translates to: PTRLMGWDQGGQAVLSCLPPLRP*EMESQM
Trigger: CATTTGTGATTCCATTTCTCAAGGTCTCAATGGAGG...CAGACAGCTTAGTACAGCCTGGCCTCCCTGGTCCCATCCCATCAGTCTAGTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137526.2
CDS-3UTR GCA 90 bp TACTCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGAAGGACACAGGCGATCCAGGCATTaGTGGCACCCTTTTCTCACA +
Preference number: 4 (lower is better)
Translates to: YSQDIPKDPDMQSQREGHRRSRH*WHPFLT
Trigger: TGTGAGAAAAGGGTGCCAGCAATGCCTGGATCGCCT...GTGTCCTTCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGAGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR GCA 90 bp GAGGAACCTCAGGAAAGCCATGGAGGAGGCAGCTCAAGCTACTTCCTGTGTGCAACTTCAAAGGCTTTTTaGTCTGCCTCAGCTACAGCC +
Preference number: 4 (lower is better)
Translates to: EEPQESHGGGSSSYFLCATSKAF*SASATA
Trigger: GGCTGTAGCTGAGGCAGAGCAAAAAGCCTTTGAAGT...TGCACACAGGAAGTAGCTTGAGCTGCCTCCTCCATGGCTTTCCTGAGGTTCCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR GCA 90 bp TCCTGCGGGTGGCTTCACATTCATCACCCGCCTCTGCAAACCATGCTTGCAGGATCGAGCTCTCTCCGTTaGAATCACTTCAAAGGCTTT +
Preference number: 4 (lower is better)
Translates to: SCGWLHIHHPPLQTMLAGSSSLR*NHFKGF
Trigger: AAAGCCTTTGAAGTGATTGCAACGGAGAGAGCTCGA...TCCTGCAAGCATGGTTTGCAGAGGCGGGTGATGAATGTGAAGCCACCCGCAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR GCA 90 bp CAGAACCTACTCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGAACATCCGCTATGGTCTaGTCCATTCGAGCTCTCTCC +
Preference number: 4 (lower is better)
Translates to: QNLLTRHPQGSRHAVPERTSAMV*SIRALS
Trigger: GGAGAGAGCTCGAATGGAGCAGACCATAGCGGATGT...TCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGAGTAGGTTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR GCA 90 bp GTGCCAAACAGAACCTACTCACAAGACATCCCCAAGGATCCAGACATGCAGTCCAGTAGCGAGCAATGTTaGAGCCACTGCACGTCTCAC +
Preference number: 4 (lower is better)
Translates to: VPNRTYSQDIPKDPDMQSSSEQC*SHCTSH
Trigger: GTGAGACGTGCAGTGGCTGCAACATTGCTCGCTACT...GGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGAGTAGGTTCTGTTTGGCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CCA 90 bp TCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGAAGGACACATATTAGTGCTGACGATGTaGAGGAGGCAGGCCCATTGC +
Preference number: 4 (lower is better)
Translates to: SQDIPKDPDMQSQREGHILVLTM*RRQAHC
Trigger: GCAATGGGCCTGCCTCCTCCACATCGTCAGCACTAA...TATGTGTCCTTCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CCA 90 bp GGTGGGTGGAAAAAGAGTGTGATCACAGATGGCCTGTCATTCAGCTGTGCCTTTTTAGTGCTGACGATGTaGAGGAGGCAGGCCCATTGC +
Preference number: 4 (lower is better)
Translates to: GGWKKSVITDGLSFSCAFLVLTM*RRQAHC
Trigger: GCAATGGGCCTGCCTCCTCCACATCGTCAGCACTAA...AAAGGCACAGCTGAATGACAGGCCATCTGTGATCACACTCTTTTTCCACCCACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR CCA 90 bp TTCAGTTCCTTCTGGCTTTTCTCACATTTGGTTCAAACATGCCACCACCCAGTTTGTCCAGGGCTGGGCTaGGCACACTGCAGTCAGCAG +
Preference number: 4 (lower is better)
Translates to: FSSFWLFSHLVQTCHHPVCPGLG*AHCSQQ
Trigger: CTGCTGACTGCAGTGTGCCCAGCCCAGCCCTGGACA...AACTGGGTGGTGGCATGTTTGAACCAAATGTGAGAAAAGCCAGAAGGAACTGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR TCA 90 bp GTGGCAGAGGCTCTGCATTTCCAAGGTGATCCACGGAATATTTTAGTTTGGCCAAGCGTTTCAACTTGCTaGGCTGCCGAGCACCACAAG +
Preference number: 4 (lower is better)
Translates to: VAEALHFQGDPRNILVWPSVSTC*AAEHHK
Trigger: CTTGTGGTGCTCGGCAGCTCAGCAAGTTGAAACGCT...TGGCCAAACTAAAATATTCCGTGGATCACCTTGGAAATGCAGAGCCTCTGCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR TCA 90 bp TCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGAAGGACACATAACTGCTGCAGAGTGGTaGGGAAGCGTTTCAACTTGC +
Preference number: 4 (lower is better)
Translates to: SQDIPKDPDMQSQREGHITAAEW*GSVSTC
Trigger: GCAAGTTGAAACGCTTCCTCACCACTCTGCAGCAGT...TATGTGTCCTTCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR TCA 90 bp CAGAACCTACTCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGAGGGGCAGGTTGGCCTTaGGAAATGGAATCACAAATG +
Preference number: 4 (lower is better)
Translates to: QNLLTRHPQGSRHAVPERGAGWP*EMESQM
Trigger: CATTTGTGATTCCATTTCTCAAGGCCAACCTGCCCC...TCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGAGTAGGTTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR GCA 90 bp CCATTGGAGCCTAAATTTCTCCTCCTCAAGGCAGGGTACAAAAGCTCTGGCCTGAGAGTCAGCAGGAGATaGGATACTGGTGTTGAGCAG +
Preference number: 4 (lower is better)
Translates to: PLEPKFLLLKAGYKSSGLRVSRR*DTGVEQ
Trigger: CTGCTCAACACCAGTATCGCATCTCCTGCTGACTCT...CAGGCCAGAGCTTTTGTACCCTGCCTTGAGGAGGAGAAATTTAGGCTCCAATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR CCA 90 bp TACTCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGAAGGACACTCCTCCAGGATTTATTaGTGGGAGGGGTGGCATGAT +
Preference number: 4 (lower is better)
Translates to: YSQDIPKDPDMQSQREGHSSRIY*WEGWHD
Trigger: ATCATGCCACCCCTCCCACCAATAAATCCTGGAGGA...GTGTCCTTCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGAGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CCA 90 bp TCTATGTTGCTGCAGGGAATCTTTGCAAGGGTTCAGATTTGTAAGGGTTACCTGAGAAGGTGCTCATGCTaGGCCAGGTACTGGGACGGG +
Preference number: 4 (lower is better)
Translates to: SMLLQGIFARVQICKGYLRRCSC*ARYWDG
Trigger: CCCGTCCCAGTACCTGGCCCAGCATGAGCACCTTCT...CAGGTAACCCTTACAAATCTGAACCCTTGCAAAGATTCCCTGCAGCAACATAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR CCA 90 bp GGATGGGACCAGGGAGGCCAGGCTGTACTAAGCTGTCTGGCAAACAGTGGGTCTTCTGTACCTCTGACATaGCCTGAATTTTCACCTTAT +
Preference number: 4 (lower is better)
Translates to: GWDQGGQAVLSCLANSGSSVPLT*PEFSPY
Trigger: ATAAGGTGAAAATTCAGGCCATGTCAGAGGTACAGA...AGACCCACTGTTTGCCAGACAGCTTAGTACAGCCTGGCCTCCCTGGTCCCATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR CAA 72 bp AAGCCATGTCCCAAGCTAGCTTCAACAAGTCTTCATTaGCTGGAGCGAGGACTGGTGTGCAGAACTCCCAGT +
Preference number: 4 (lower is better)
Translates to: KPCPKLASTSLH*LERGLVCRTPS
Trigger: ACTGGGAGTTCTGCACACCAGTCCTCGCTCCAGCAAATGAAGACTTGTTGAAGCTAGCTTGGGACATGGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR TCA 90 bp TACTCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGAAGGACACTTCCATGAACCTCCATaGGCAGTTCAGAAGAGTCAG +
Preference number: 4 (lower is better)
Translates to: YSQDIPKDPDMQSQREGHFHEPP*AVQKSQ
Trigger: CTGACTCTTCTGAACTGCTCATGGAGGTTCATGGAA...GTGTCCTTCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGAGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR TCA 90 bp CCTGCCTCATCCCCTAAAGAAGGAATTCTGCAGCACAGCCAAAACCACCAATGCGGTTCCCGATACAGGTaGGAAGTTGCAATGTCTTCT +
Preference number: 4 (lower is better)
Translates to: PASSPKEGILQHSQNHQCGSRYR*EVAMSS
Trigger: AGAAGACATTGCAACTTCTCACCTGTATCGGGAACC...GCATTGGTGGTTTTGGCTGTGCTGCAGAATTCCTTCTTTAGGGGATGAGGCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR GCA 90 bp TCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGAAGGACACATAAGAGTCAGCAGGAGATaGGATACTGGTGTTGAGCAG +
Preference number: 4 (lower is better)
Translates to: SQDIPKDPDMQSQREGHIRVSRR*DTGVEQ
Trigger: CTGCTCAACACCAGTATCGCATCTCCTGCTGACTCT...TATGTGTCCTTCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR GCA 90 bp AACCCACAATCCTGTCTGCAGTTTTCAGAACGAAGGCCATCTGCTCACTCCTTAAGTAGCGAGCAATGTTaGAGCCACTGCACGTCTCAC +
Preference number: 4 (lower is better)
Translates to: NPQSCLQFSERRPSAHSLSSEQC*SHCTSH
Trigger: GTGAGACGTGCAGTGGCTGCAACATTGCTCGCTACT...TAAGGAGTGAGCAGATGGCCTTCGTTCTGAAAACTGCAGACAGGATTGTGGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CCA 90 bp AAAGTGATGGAACATTTTGGGTGGGATATCTCTGGCTTCCTGGATGTACCCGCTCGATCCAGGCATTGCTaGCACCCTTTTCTCACAACC +
Preference number: 4 (lower is better)
Translates to: KVMEHFGWDISGFLDVPARSRHC*HPFLTT
Trigger: GGTTGTGAGAAAAGGGTGCCAGCAATGCCTGGATCG...AGCGGGTACATCCAGGAAGCCAGAGATATCCCACCCAAAATGTTCCATCACTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR CCA 90 bp ACCTGGGTAGGACACAGAAGCAAAGCAGTCCCCAACAGCACTATAGAAACTCAGTCCTCCAGGATTTATTaGTGGGAGGGGTGGCATGAT +
Preference number: 4 (lower is better)
Translates to: TWVGHRSKAVPNSTIETQSSRIY*WEGWHD
Trigger: ATCATGCCACCCCTCCCACCAATAAATCCTGGAGGA...CTGAGTTTCTATAGTGCTGTTGGGGACTGCTTTGCTTCTGTGTCCTACCCAGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CCA 90 bp CAGAACCTACTCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGAGAAGAGGAAAGTTTGTaGCCTCCTGGAGCTTGCAAT +
Preference number: 4 (lower is better)
Translates to: QNLLTRHPQGSRHAVPEREEESL*PPGACN
Trigger: ATTGCAAGCTCCAGGAGGCCACAAACTTTCCTCTTC...TCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGAGTAGGTTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CCA 90 bp ATTCAGACTTGTTCTTCAGACTTGTTCATTGTACAAAAAGTGACCACAGCTTCCTGCAGTCAGCAGACCTaGCTGAGCCCCGCCCTCCAG +
Preference number: 4 (lower is better)
Translates to: IQTCSSDLFIVQKVTTASCSQQT*LSPALQ
Trigger: CTGGAGGGCGGGGCTCAGCCAGGTCTGCTGACTGCA...GGAAGCTGTGGTCACTTTTTGTACAATGAACAAGTCTGAAGAACAAGTCTGAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR CAA 72 bp GAGTGCCTCTTGGATGCTTCCTGCCAACTTCACTTCTaGCTGACGACCCAACAGCTACTTGTTCTAATAGCC +
Preference number: 4 (lower is better)
Translates to: ECLLDASCQLHF*LTTQQLLVLIA
Trigger: GGCTATTAGAACAAGTAGCTGTTGGGTCGTCAGCAAGAAGTGAAGTTGGCAGGAAGCATCCAAGAGGCACTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR TCA 90 bp AACCCACAATCCTGTCTGCAGTTTTCAGAACGAAGGCCATCTGCTCACTCCTTACTCGCCGATCTCAGGTaGGATATCATTGCCAAACTG +
Preference number: 4 (lower is better)
Translates to: NPQSCLQFSERRPSAHSLLADLR*DIIAKL
Trigger: CAGTTTGGCAATGATATCTCACCTGAGATCGGCGAG...TAAGGAGTGAGCAGATGGCCTTCGTTCTGAAAACTGCAGACAGGATTGTGGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR TCA 90 bp GTGCCAAACAGAACCTACTCACAAGACATCCCCAAGGATCCAGACATGCAGTCCGCCGTTTCCAATAGTTaGGTTCTTCACGGTCAGATT +
Preference number: 4 (lower is better)
Translates to: VPNRTYSQDIPKDPDMQSAVSNS*VLHGQI
Trigger: AATCTGACCGTGAAGAACTCAACTATTGGAAACGGC...GGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGAGTAGGTTCTGTTTGGCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR TCA 90 bp TCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGAAGGACACATAAGCCTTCTGTACCTCTaGCATGGCCTGAATTTTCAC +
Preference number: 4 (lower is better)
Translates to: SQDIPKDPDMQSQREGHISLLYL*HGLNFH
Trigger: GTGAAAATTCAGGCCATGTCAGAGGTACAGAAGGCT...TATGTGTCCTTCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR TCA 90 bp GTAGCTGCCTTTAGATACATCAGGAGAAGGCATCAGATCTCATTACAGATGGTTGCTTCCCTGAGCCTGTaGGCAGTGTCAGCAAACCGT +
Preference number: 4 (lower is better)
Translates to: VAAFRYIRRRHQISLQMVASLSL*AVSANR
Trigger: ACGGTTTGCTGACACTGCTCACAGGCTCAGGGAAGC...AACCATCTGTAATGAGATCTGATGCCTTCTCCTGATGTATCTAAAGGCAGCTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR GCA 90 bp ACCTGGGTAGGACACAGAAGCAAAGCAGTCCCCAACAGCACTATAGAAACTCAGAGACTAAGATTGTGGTaGCTCTCACGAACTTCTCGG +
Preference number: 4 (lower is better)
Translates to: TWVGHRSKAVPNSTIETQRLRLW*LSRTSR
Trigger: CCGAGAAGTTCGTGAGAGGCACCACAATCTTAGTCT...CTGAGTTTCTATAGTGCTGTTGGGGACTGCTTTGCTTCTGTGTCCTACCCAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR GCA 90 bp TCTATGTTGCTGCAGGGAATCTTTGCAAGGGTTCAGATTTGTAAGGGTTACCTGGTACTCCCAGGGCTGTaGTGCCTAGAGACCAACTCA +
Preference number: 4 (lower is better)
Translates to: SMLLQGIFARVQICKGYLVLPGL*CLETNS
Trigger: TGAGTTGGTCTCTAGGCAGCACAGCCCTGGGAGTAC...CAGGTAACCCTTACAAATCTGAACCCTTGCAAAGATTCCCTGCAGCAACATAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR GCA 90 bp AACCCACAATCCTGTCTGCAGTTTTCAGAACGAAGGCCATCTGCTCACTCCTTACAGGAAAGCATCTTCTaGAGCCTGCCGTTTGACATC +
Preference number: 4 (lower is better)
Translates to: NPQSCLQFSERRPSAHSLQESIF*SLPFDI
Trigger: GATGTCAAACGGCAGGCTGCAGAAGATGCTTTCCTG...TAAGGAGTGAGCAGATGGCCTTCGTTCTGAAAACTGCAGACAGGATTGTGGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CCA 90 bp CAGAACCTACTCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGAAGGGTAGGAGGGGAATaGTTGATGCCATTGCTTAAT +
Preference number: 4 (lower is better)
Translates to: QNLLTRHPQGSRHAVPERRVGGE*LMPLLN
Trigger: ATTAAGCAATGGCATCAACCATTCCCCTCCTACCCT...TCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGAGTAGGTTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CCA 90 bp GGATGGGACCAGGGAGGCCAGGCTGTACTAAGCTGTCTGGCAAACAGTGGGTCTAAATGGAATCACAAATaGACGAAGAGGAAAGTTTGT +
Preference number: 4 (lower is better)
Translates to: GWDQGGQAVLSCLANSGSKWNHK*TKRKVC
Trigger: ACAAACTTTCCTCTTCGTCCATTTGTGATTCCATTT...AGACCCACTGTTTGCCAGACAGCTTAGTACAGCCTGGCCTCCCTGGTCCCATCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CCA 90 bp TTCAGTTCCTTCTGGCTTTTCTCACATTTGGTTCAAACATGCCACCACCCAGTTGTGCTGAAGAGGTGGTaGAGTAGGATGGAACTGGCC +
Preference number: 4 (lower is better)
Translates to: FSSFWLFSHLVQTCHHPVVLKRW*SRMELA
Trigger: GGCCAGTTCCATCCTACTCCACCACCTCTTCAGCAC...AACTGGGTGGTGGCATGTTTGAACCAAATGTGAGAAAAGCCAGAAGGAACTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CCA 90 bp TCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGAAGGACACATAATAGTGCTGAAGAGGTaGTGGAGTAGGATGGAACTG +
Preference number: 4 (lower is better)
Translates to: SQDIPKDPDMQSQREGHIIVLKR*WSRMEL
Trigger: CAGTTCCATCCTACTCCACCACCTCTTCAGCACTAT...TATGTGTCCTTCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CCA 90 bp GAGGAACCTCAGGAAAGCCATGGAGGAGGCAGCTCAAGCTACTTCCTGTGTGCATCTGTACCTCTGACATaGCCTGAATTTTCACCTTAT +
Preference number: 4 (lower is better)
Translates to: EEPQESHGGGSSSYFLCASVPLT*PEFSPY
Trigger: ATAAGGTGAAAATTCAGGCCATGTCAGAGGTACAGA...TGCACACAGGAAGTAGCTTGAGCTGCCTCCTCCATGGCTTTCCTGAGGTTCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CCA 90 bp ACACAAGCAAAATCAAGAAAAACACTGGAGTTAAGAGGTGGGTTCCAAACTAACTGGCCACAGAGGCGGTaGTGCCGCTCCCAGTCCTTA +
Preference number: 4 (lower is better)
Translates to: TQAKSRKTLELRGGFQTNWPQRR*CRSQSL
Trigger: TAAGGACTGGGAGCGGCACCACCGCCTCTGTGGCCA...GTTAGTTTGGAACCCACCTCTTAACTCCAGTGTTTTTCTTGATTTTGCTTGTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CCA 90 bp ACTGGTGTGCAGAACTCCCAGTTTGGCTACTTTTGTTATTTACTTCCTGAAATTAGCAGTGGCCTGCTCTaGCTGTGGGGACTGTGGCCA +
Preference number: 4 (lower is better)
Translates to: TGVQNSQFGYFCYLLPEISSGLL*LWGLWP
Trigger: TGGCCACAGTCCCCACAGCCAGAGCAGGCCACTGCT...AATTTCAGGAAGTAAATAACAAAAGTAGCCAAACTGGGAGTTCTGCACACCAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CCA 90 bp ACACAAGCAAAATCAAGAAAAACACTGGAGTTAAGAGGTGGGTTCCAAACTAACTGTCCAGGGCTGGGCTaGGCACACTGCAGTCAGCAG +
Preference number: 4 (lower is better)
Translates to: TQAKSRKTLELRGGFQTNCPGLG*AHCSQQ
Trigger: CTGCTGACTGCAGTGTGCCCAGCCCAGCCCTGGACA...GTTAGTTTGGAACCCACCTCTTAACTCCAGTGTTTTTCTTGATTTTGCTTGTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CCA 90 bp ACACAAGCAAAATCAAGAAAAACACTGGAGTTAAGAGGTGGGTTCCAAACTAACGGTCTTGTCCAGGGCTaGGCTGGGCACACTGCAGTC +
Preference number: 4 (lower is better)
Translates to: TQAKSRKTLELRGGFQTNGLVQG*AGHTAV
Trigger: GACTGCAGTGTGCCCAGCCCAGCCCTGGACAAGACC...GTTAGTTTGGAACCCACCTCTTAACTCCAGTGTTTTTCTTGATTTTGCTTGTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR TCA 90 bp TCAGCTTCTGGGGAAAGTGATGGAACATTTTGGGTGGGATATCTCTGGCTTCCTTTCCATGAACCTCCATaGGCAGTTCAGAAGAGTCAG +
Preference number: 4 (lower is better)
Translates to: SASGESDGTFWVGYLWLPFHEPP*AVQKSQ
Trigger: CTGACTCTTCTGAACTGCTCATGGAGGTTCATGGAA...AGGAAGCCAGAGATATCCCACCCAAAATGTTCCATCACTTTCCCCAGAAGCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR TCA 90 bp GTGGCAGAGGCTCTGCATTTCCAAGGTGATCCACGGAATATTTTAGTTTGGCCAGGTTCCCGATACAGGTaGGAAGTTGCAATGTCTTCT +
Preference number: 4 (lower is better)
Translates to: VAEALHFQGDPRNILVWPGSRYR*EVAMSS
Trigger: AGAAGACATTGCAACTTCTCACCTGTATCGGGAACC...TGGCCAAACTAAAATATTCCGTGGATCACCTTGGAAATGCAGAGCCTCTGCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR GCA 90 bp TCTATGTTGCTGCAGGGAATCTTTGCAAGGGTTCAGATTTGTAAGGGTTACCTGAGGCGATCCAGGCATTaGTGGCACCCTTTTCTCACA +
Preference number: 4 (lower is better)
Translates to: SMLLQGIFARVQICKGYLRRSRH*WHPFLT
Trigger: TGTGAGAAAAGGGTGCCAGCAATGCCTGGATCGCCT...CAGGTAACCCTTACAAATCTGAACCCTTGCAAAGATTCCCTGCAGCAACATAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR GCA 90 bp TTCAGTTCCTTCTGGCTTTTCTCACATTTGGTTCAAACATGCCACCACCCAGTTTTCAACTTGCTGAGCTaGCGAGCACCACAAGTAGCC +
Preference number: 4 (lower is better)
Translates to: FSSFWLFSHLVQTCHHPVFNLLS*RAPQVA
Trigger: GGCTACTTGTGGTGCTCGGCAGCTCAGCAAGTTGAA...AACTGGGTGGTGGCATGTTTGAACCAAATGTGAGAAAAGCCAGAAGGAACTGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR GCA 90 bp GATAAGTCTCCTGTAACTCAGGCTTGCTATGCAGCTATGGATAACCTTAAACTTCTCCCAGGGCTGTGCTaGCTAGAGACCAACTCAGTC +
Preference number: 4 (lower is better)
Translates to: DKSPVTQACYAAMDNLKLLPGLC*LETNSV
Trigger: GACTGAGTTGGTCTCTAGGCAGCACAGCCCTGGGAG...AAGTTTAAGGTTATCCATAGCTGCATAGCAAGCCTGAGTTACAGGAGACTTATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR GCA 90 bp ACCTGGGTAGGACACAGAAGCAAAGCAGTCCCCAACAGCACTATAGAAACTCAGTCGAGCTCTCTCCGTTaGAATCACTTCAAAGGCTTT +
Preference number: 4 (lower is better)
Translates to: TWVGHRSKAVPNSTIETQSSSLR*NHFKGF
Trigger: AAAGCCTTTGAAGTGATTGCAACGGAGAGAGCTCGA...CTGAGTTTCTATAGTGCTGTTGGGGACTGCTTTGCTTCTGTGTCCTACCCAGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR GCA 90 bp TTCAGTTCCTTCTGGCTTTTCTCACATTTGGTTCAAACATGCCACCACCCAGTTGCATCTTCTGCAGCCTaGCGTTTGACATCCGCTATG +
Preference number: 4 (lower is better)
Translates to: FSSFWLFSHLVQTCHHPVASSAA*RLTSAM
Trigger: CATAGCGGATGTCAAACGGCAGGCTGCAGAAGATGC...AACTGGGTGGTGGCATGTTTGAACCAAATGTGAGAAAAGCCAGAAGGAACTGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CCA 90 bp GATAAGTCTCCTGTAACTCAGGCTTGCTATGCAGCTATGGATAACCTTAAACTTTTCTCACAACCAAGTTaGAAGGCGGCCGCTCCAGGG +
Preference number: 4 (lower is better)
Translates to: DKSPVTQACYAAMDNLKLFSQPS*KAAAPG
Trigger: CCCTGGAGCGGCCGCCTTCCAACTTGGTTGTGAGAA...AAGTTTAAGGTTATCCATAGCTGCATAGCAAGCCTGAGTTACAGGAGACTTATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CCA 90 bp TCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGAAGGACACATAAAGTTTGTGGCCTCCTaGAGCTTGCAATGGAATTCT +
Preference number: 4 (lower is better)
Translates to: SQDIPKDPDMQSQREGHIKFVAS*SLQWNS
Trigger: AGAATTCCATTGCAAGCTCCAGGAGGCCACAAACTT...TATGTGTCCTTCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CCA 90 bp AAAGTGATGGAACATTTTGGGTGGGATATCTCTGGCTTCCTGGATGTACCCGCTGAAGAGGAAAGTTTGTaGCCTCCTGGAGCTTGCAAT +
Preference number: 4 (lower is better)
Translates to: KVMEHFGWDISGFLDVPAEEESL*PPGACN
Trigger: ATTGCAAGCTCCAGGAGGCCACAAACTTTCCTCTTC...AGCGGGTACATCCAGGAAGCCAGAGATATCCCACCCAAAATGTTCCATCACTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR CCA 90 bp TCCTGCGGGTGGCTTCACATTCATCACCCGCCTCTGCAAACCATGCTTGCAGGAAAATGGAATCACAAATaGACGAAGAGGAAAGTTTGT +
Preference number: 4 (lower is better)
Translates to: SCGWLHIHHPPLQTMLAGKWNHK*TKRKVC
Trigger: ACAAACTTTCCTCTTCGTCCATTTGTGATTCCATTT...TCCTGCAAGCATGGTTTGCAGAGGCGGGTGATGAATGTGAAGCCACCCGCAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CCA 90 bp CAGAACCTACTCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGAGTTGGCCTTGAGAAATaGAATCACAAATGGACGAAG +
Preference number: 4 (lower is better)
Translates to: QNLLTRHPQGSRHAVPERVGLEK*NHKWTK
Trigger: CTTCGTCCATTTGTGATTCCATTTCTCAAGGCCAAC...TCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGAGTAGGTTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CCA 90 bp ATTCAGACTTGTTCTTCAGACTTGTTCATTGTACAAAAAGTGACCACAGCTTCCAGAAGGTGCTCATGCTaGGCCAGGTACTGGGACGGG +
Preference number: 4 (lower is better)
Translates to: IQTCSSDLFIVQKVTTASRRCSC*ARYWDG
Trigger: CCCGTCCCAGTACCTGGCCCAGCATGAGCACCTTCT...GGAAGCTGTGGTCACTTTTTGTACAATGAACAAGTCTGAAGAACAAGTCTGAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CCA 90 bp ACACAAGCAAAATCAAGAAAAACACTGGAGTTAAGAGGTGGGTTCCAAACTAACAGAAGGTGCTCATGCTaGGCCAGGTACTGGGACGGG +
Preference number: 4 (lower is better)
Translates to: TQAKSRKTLELRGGFQTNRRCSC*ARYWDG
Trigger: CCCGTCCCAGTACCTGGCCCAGCATGAGCACCTTCT...GTTAGTTTGGAACCCACCTCTTAACTCCAGTGTTTTTCTTGATTTTGCTTGTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CCA 90 bp TTCAGTTCCTTCTGGCTTTTCTCACATTTGGTTCAAACATGCCACCACCCAGTTGGAGTAGGATGGAACTaGCCCCCAGGATTCATAAGG +
Preference number: 4 (lower is better)
Translates to: FSSFWLFSHLVQTCHHPVGVGWN*PPGFIR
Trigger: CCTTATGAATCCTGGGGGCCAGTTCCATCCTACTCC...AACTGGGTGGTGGCATGTTTGAACCAAATGTGAGAAAAGCCAGAAGGAACTGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CCA 90 bp TCTATGTTGCTGCAGGGAATCTTTGCAAGGGTTCAGATTTGTAAGGGTTACCTGGGAGTAGGATGGAACTaGCCCCCAGGATTCATAAGG +
Preference number: 4 (lower is better)
Translates to: SMLLQGIFARVQICKGYLGVGWN*PPGFIR
Trigger: CCTTATGAATCCTGGGGGCCAGTTCCATCCTACTCC...CAGGTAACCCTTACAAATCTGAACCCTTGCAAAGATTCCCTGCAGCAACATAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR CCA 90 bp AAAGTGATGGAACATTTTGGGTGGGATATCTCTGGCTTCCTGGATGTACCCGCTATAGTGCTGAAGAGGTaGTGGAGTAGGATGGAACTG +
Preference number: 4 (lower is better)
Translates to: KVMEHFGWDISGFLDVPAIVLKR*WSRMEL
Trigger: CAGTTCCATCCTACTCCACCACCTCTTCAGCACTAT...AGCGGGTACATCCAGGAAGCCAGAGATATCCCACCCAAAATGTTCCATCACTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR CCA 90 bp ACACAAGCAAAATCAAGAAAAACACTGGAGTTAAGAGGTGGGTTCCAAACTAACTGGCCATGTAGACTCTaGCCACAGAGGCGGTGGTGC +
Preference number: 4 (lower is better)
Translates to: TQAKSRKTLELRGGFQTNWPCRL*PQRRWC
Trigger: GCACCACCGCCTCTGTGGCCAGAGTCTACATGGCCA...GTTAGTTTGGAACCCACCTCTTAACTCCAGTGTTTTTCTTGATTTTGCTTGTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CCA 90 bp GATAAGTCTCCTGTAACTCAGGCTTGCTATGCAGCTATGGATAACCTTAAACTTTGGCTGTGGGGACTGTaGCCATGTAGACTCTGGCCA +
Preference number: 4 (lower is better)
Translates to: DKSPVTQACYAAMDNLKLWLWGL*PCRLWP
Trigger: TGGCCAGAGTCTACATGGCCACAGTCCCCACAGCCA...AAGTTTAAGGTTATCCATAGCTGCATAGCAAGCCTGAGTTACAGGAGACTTATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR TCA 90 bp GTAGCTGCCTTTAGATACATCAGGAGAAGGCATCAGATCTCATTACAGATGGTTACTGCTGCAGAGTGGTaGGGAAGCGTTTCAACTTGC +
Preference number: 4 (lower is better)
Translates to: VAAFRYIRRRHQISLQMVTAAEW*GSVSTC
Trigger: GCAAGTTGAAACGCTTCCTCACCACTCTGCAGCAGT...AACCATCTGTAATGAGATCTGATGCCTTCTCCTGATGTATCTAAAGGCAGCTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR TCA 90 bp GTGGCAGAGGCTCTGCATTTCCAAGGTGATCCACGGAATATTTTAGTTTGGCCAGCCGTTTCCAATAGTTaGGTTCTTCACGGTCAGATT +
Preference number: 4 (lower is better)
Translates to: VAEALHFQGDPRNILVWPAVSNS*VLHGQI
Trigger: AATCTGACCGTGAAGAACTCAACTATTGGAAACGGC...TGGCCAAACTAAAATATTCCGTGGATCACCTTGGAAATGCAGAGCCTCTGCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR TCA 90 bp AACCCACAATCCTGTCTGCAGTTTTCAGAACGAAGGCCATCTGCTCACTCCTTAGCCGTTTCCAATAGTTaGGTTCTTCACGGTCAGATT +
Preference number: 4 (lower is better)
Translates to: NPQSCLQFSERRPSAHSLAVSNS*VLHGQI
Trigger: AATCTGACCGTGAAGAACTCAACTATTGGAAACGGC...TAAGGAGTGAGCAGATGGCCTTCGTTCTGAAAACTGCAGACAGGATTGTGGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR GCA 90 bp AATAAGAAATTCACTCTCCTTGATGAACATTTGGGAACTTTAAGTGGGTGGGTGAGCAGAAGGTGCTCATaGTGGGCCAGGTACTGGGAC +
Preference number: 4 (lower is better)
Translates to: NKKFTLLDEHLGTLSGWVSRRCS*WARYWD
Trigger: GTCCCAGTACCTGGCCCAGCATGAGCACCTTCTGCT...CACCCACCCACTTAAAGTTCCCAAATGTTCATCAAGGAGAGTGAATTTCTTATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR GCA 90 bp TCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGAAGGACACATATCTGTGGACTCTTCTTaGTCATTGATGACCAGGAAA +
Preference number: 4 (lower is better)
Translates to: SQDIPKDPDMQSQREGHISVDSS*SLMTRK
Trigger: TTTCCTGGTCATCAATGAGCAAGAAGAGTCCACAGA...TATGTGTCCTTCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CCA 90 bp GTGGCAGAGGCTCTGCATTTCCAAGGTGATCCACGGAATATTTTAGTTTGGCCAAGGGTAGGAGGGGAATaGTTGATGCCATTGCTTAAT +
Preference number: 4 (lower is better)
Translates to: VAEALHFQGDPRNILVWPRVGGE*LMPLLN
Trigger: ATTAAGCAATGGCATCAACCATTCCCCTCCTACCCT...TGGCCAAACTAAAATATTCCGTGGATCACCTTGGAAATGCAGAGCCTCTGCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CCA 90 bp ACTGGTGTGCAGAACTCCCAGTTTGGCTACTTTTGTTATTTACTTCCTGAAATTTCTCTGTGGTGGCGATaGGGCACCATTCAGGGTAGG +
Preference number: 4 (lower is better)
Translates to: TGVQNSQFGYFCYLLPEISLWWR*GTIQGR
Trigger: CCTACCCTGAATGGTGCCCCATCGCCACCACAGAGA...AATTTCAGGAAGTAAATAACAAAAGTAGCCAAACTGGGAGTTCTGCACACCAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CCA 90 bp TCTATGTTGCTGCAGGGAATCTTTGCAAGGGTTCAGATTTGTAAGGGTTACCTGATTGCTGAATCTCTGTaGTGGCGATGGGGCACCATT +
Preference number: 4 (lower is better)
Translates to: SMLLQGIFARVQICKGYLIAESL*WRWGTI
Trigger: AATGGTGCCCCATCGCCACCACAGAGATTCAGCAAT...CAGGTAACCCTTACAAATCTGAACCCTTGCAAAGATTCCCTGCAGCAACATAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR CCA 90 bp GTGGCAGAGGCTCTGCATTTCCAAGGTGATCCACGGAATATTTTAGTTTGGCCAAAGTTTGTGGCCTCCTaGAGCTTGCAATGGAATTCT +
Preference number: 4 (lower is better)
Translates to: VAEALHFQGDPRNILVWPKFVAS*SLQWNS
Trigger: AGAATTCCATTGCAAGCTCCAGGAGGCCACAAACTT...TGGCCAAACTAAAATATTCCGTGGATCACCTTGGAAATGCAGAGCCTCTGCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CCA 90 bp AAAGTGATGGAACATTTTGGGTGGGATATCTCTGGCTTCCTGGATGTACCCGCTAAGTTTGTGGCCTCCTaGAGCTTGCAATGGAATTCT +
Preference number: 4 (lower is better)
Translates to: KVMEHFGWDISGFLDVPAKFVAS*SLQWNS
Trigger: AGAATTCCATTGCAAGCTCCAGGAGGCCACAAACTT...AGCGGGTACATCCAGGAAGCCAGAGATATCCCACCCAAAATGTTCCATCACTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR CCA 90 bp GGTGGGTGGAAAAAGAGTGTGATCACAGATGGCCTGTCATTCAGCTGTGCCTTTGTTGGCCTTGAGAAATaGAATCACAAATGGACGAAG +
Preference number: 4 (lower is better)
Translates to: GGWKKSVITDGLSFSCAFVGLEK*NHKWTK
Trigger: CTTCGTCCATTTGTGATTCCATTTCTCAAGGCCAAC...AAAGGCACAGCTGAATGACAGGCCATCTGTGATCACACTCTTTTTCCACCCACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR CCA 90 bp TACTCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGAAGGACACTCTGTACCTCTGACATaGCCTGAATTTTCACCTTAT +
Preference number: 4 (lower is better)
Translates to: YSQDIPKDPDMQSQREGHSVPLT*PEFSPY
Trigger: ATAAGGTGAAAATTCAGGCCATGTCAGAGGTACAGA...GTGTCCTTCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGAGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CCA 90 bp ATTCAGACTTGTTCTTCAGACTTGTTCATTGTACAAAAAGTGACCACAGCTTCCTGGCTGTGGGGACTGTaGCCATGTAGACTCTGGCCA +
Preference number: 4 (lower is better)
Translates to: IQTCSSDLFIVQKVTTASWLWGL*PCRLWP
Trigger: TGGCCAGAGTCTACATGGCCACAGTCCCCACAGCCA...GGAAGCTGTGGTCACTTTTTGTACAATGAACAAGTCTGAAGAACAAGTCTGAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR CAA 72 bp TGTAATCTCACTCAGCAGTGGCAGGCTGAGGCAAGTTaGTGTCAGCGCTACAGAGTGAGAAACATCTTGAAA +
Preference number: 4 (lower is better)
Translates to: CNLTQQWQAEAS*CQRYRVRNILK
Trigger: TTTCAAGATGTTTCTCACTCTGTAGCGCTGACACAAACTTGCCTCAGCCTGCCACTGCTGAGTGAGATTACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR TCA 90 bp TTCAGTTCCTTCTGGCTTTTCTCACATTTGGTTCAAACATGCCACCACCCAGTTAGCCTTCTGTACCTCTaGCATGGCCTGAATTTTCAC +
Preference number: 4 (lower is better)
Translates to: FSSFWLFSHLVQTCHHPVSLLYL*HGLNFH
Trigger: GTGAAAATTCAGGCCATGTCAGAGGTACAGAAGGCT...AACTGGGTGGTGGCATGTTTGAACCAAATGTGAGAAAAGCCAGAAGGAACTGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR TCA 90 bp GTGGCAGAGGCTCTGCATTTCCAAGGTGATCCACGGAATATTTTAGTTTGGCCACTTGATAGCCTCCATTaGGACCTTGAGAAATGGAAT +
Preference number: 4 (lower is better)
Translates to: VAEALHFQGDPRNILVWPLDSLH*DLEKWN
Trigger: ATTCCATTTCTCAAGGTCTCAATGGAGGCTATCAAG...TGGCCAAACTAAAATATTCCGTGGATCACCTTGGAAATGCAGAGCCTCTGCCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137526.2
CDS-3UTR GCA 90 bp GGTGGGTGGAAAAAGAGTGTGATCACAGATGGCCTGTCATTCAGCTGTGCCTTTCATAATGCAATTCAGTaGATGGTCAAGGTGTTTCCA +
Preference number: 4 (lower is better)
Translates to: GGWKKSVITDGLSFSCAFHNAIQ*MVKVFP
Trigger: TGGAAACACCTTGACCATGCACTGAATTGCATTATG...AAAGGCACAGCTGAATGACAGGCCATCTGTGATCACACTCTTTTTCCACCCACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR GCA 90 bp ATTAATGCTGGCATTTCCTCTAAATTTTCTTCCAGTCCTTTTGAGACTAACAGCCTCCCAGGGCTGTGCTaGCTAGAGACCAACTCAGTC +
Preference number: 4 (lower is better)
Translates to: INAGISSKFSSSPFETNSLPGLC*LETNSV
Trigger: GACTGAGTTGGTCTCTAGGCAGCACAGCCCTGGGAG...GCTGTTAGTCTCAAAAGGACTGGAAGAAAATTTAGAGGAAATGCCAGCATTAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR GCA 90 bp ACACAAGCAAAATCAAGAAAAACACTGGAGTTAAGAGGTGGGTTCCAAACTAACGTACTCCCAGGGCTGTaGTGCCTAGAGACCAACTCA +
Preference number: 4 (lower is better)
Translates to: TQAKSRKTLELRGGFQTNVLPGL*CLETNS
Trigger: TGAGTTGGTCTCTAGGCAGCACAGCCCTGGGAGTAC...GTTAGTTTGGAACCCACCTCTTAACTCCAGTGTTTTTCTTGATTTTGCTTGTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR GCA 90 bp ATTCAGACTTGTTCTTCAGACTTGTTCATTGTACAAAAAGTGACCACAGCTTCCGTACTCCCAGGGCTGTaGTGCCTAGAGACCAACTCA +
Preference number: 4 (lower is better)
Translates to: IQTCSSDLFIVQKVTTASVLPGL*CLETNS
Trigger: TGAGTTGGTCTCTAGGCAGCACAGCCCTGGGAGTAC...GGAAGCTGTGGTCACTTTTTGTACAATGAACAAGTCTGAAGAACAAGTCTGAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CCA 90 bp GATAAGTCTCCTGTAACTCAGGCTTGCTATGCAGCTATGGATAACCTTAAACTTTCCAGGATTTATTGGTaGGAGGGGTGGCATGATGGG +
Preference number: 4 (lower is better)
Translates to: DKSPVTQACYAAMDNLKLSRIYW*EGWHDG
Trigger: CCCATCATGCCACCCCTCCCACCAATAAATCCTGGA...AAGTTTAAGGTTATCCATAGCTGCATAGCAAGCCTGAGTTACAGGAGACTTATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CCA 90 bp GTAGCTGCCTTTAGATACATCAGGAGAAGGCATCAGATCTCATTACAGATGGTTTCCTCCAGGATTTATTaGTGGGAGGGGTGGCATGAT +
Preference number: 4 (lower is better)
Translates to: VAAFRYIRRRHQISLQMVSSRIY*WEGWHD
Trigger: ATCATGCCACCCCTCCCACCAATAAATCCTGGAGGA...AACCATCTGTAATGAGATCTGATGCCTTCTCCTGATGTATCTAAAGGCAGCTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR CCA 90 bp GATAAGTCTCCTGTAACTCAGGCTTGCTATGCAGCTATGGATAACCTTAAACTTGGAGTAGGATGGAACTaGCCCCCAGGATTCATAAGG +
Preference number: 4 (lower is better)
Translates to: DKSPVTQACYAAMDNLKLGVGWN*PPGFIR
Trigger: CCTTATGAATCCTGGGGGCCAGTTCCATCCTACTCC...AAGTTTAAGGTTATCCATAGCTGCATAGCAAGCCTGAGTTACAGGAGACTTATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CCA 90 bp ATTAATGCTGGCATTTCCTCTAAATTTTCTTCCAGTCCTTTTGAGACTAACAGCGGTGGTGGAGTAGGATaGAACTGGCCCCCAGGATTC +
Preference number: 4 (lower is better)
Translates to: INAGISSKFSSSPFETNSGGGVG*NWPPGF
Trigger: GAATCCTGGGGGCCAGTTCCATCCTACTCCACCACC...GCTGTTAGTCTCAAAAGGACTGGAAGAAAATTTAGAGGAAATGCCAGCATTAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR CCA 90 bp ACACAAGCAAAATCAAGAAAAACACTGGAGTTAAGAGGTGGGTTCCAAACTAACGTGCTGAAGAGGTGGTaGAGTAGGATGGAACTGGCC +
Preference number: 4 (lower is better)
Translates to: TQAKSRKTLELRGGFQTNVLKRW*SRMELA
Trigger: GGCCAGTTCCATCCTACTCCACCACCTCTTCAGCAC...GTTAGTTTGGAACCCACCTCTTAACTCCAGTGTTTTTCTTGATTTTGCTTGTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CCA 90 bp TTCAGTTCCTTCTGGCTTTTCTCACATTTGGTTCAAACATGCCACCACCCAGTTATAGTGCTGAAGAGGTaGTGGAGTAGGATGGAACTG +
Preference number: 4 (lower is better)
Translates to: FSSFWLFSHLVQTCHHPVIVLKR*WSRMEL
Trigger: CAGTTCCATCCTACTCCACCACCTCTTCAGCACTAT...AACTGGGTGGTGGCATGTTTGAACCAAATGTGAGAAAAGCCAGAAGGAACTGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CCA 90 bp GGTGGGTGGAAAAAGAGTGTGATCACAGATGGCCTGTCATTCAGCTGTGCCTTTGAGGATCCAGAAAGCTaGTTAGCAGAAATGTACAAT +
Preference number: 4 (lower is better)
Translates to: GGWKKSVITDGLSFSCAFEDPES*LAEMYN
Trigger: ATTGTACATTTCTGCTAACCAGCTTTCTGGATCCTC...AAAGGCACAGCTGAATGACAGGCCATCTGTGATCACACTCTTTTTCCACCCACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR GCA 90 bp GTGGCAGAGGCTCTGCATTTCCAAGGTGATCCACGGAATATTTTAGTTTGGCCACATAATGCAATTCAGTaGATGGTCAAGGTGTTTCCA +
Preference number: 4 (lower is better)
Translates to: VAEALHFQGDPRNILVWPHNAIQ*MVKVFP
Trigger: TGGAAACACCTTGACCATGCACTGAATTGCATTATG...TGGCCAAACTAAAATATTCCGTGGATCACCTTGGAAATGCAGAGCCTCTGCCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CCA 90 bp ACACAAGCAAAATCAAGAAAAACACTGGAGTTAAGAGGTGGGTTCCAAACTAACTCCAGGATTTATTGGTaGGAGGGGTGGCATGATGGG +
Preference number: 4 (lower is better)
Translates to: TQAKSRKTLELRGGFQTNSRIYW*EGWHDG
Trigger: CCCATCATGCCACCCCTCCCACCAATAAATCCTGGA...GTTAGTTTGGAACCCACCTCTTAACTCCAGTGTTTTTCTTGATTTTGCTTGTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CCA 90 bp ATTCAGACTTGTTCTTCAGACTTGTTCATTGTACAAAAAGTGACCACAGCTTCCAGGAGTAAAGGACACTaGCCTCGGTCCTCCAGGATT +
Preference number: 4 (lower is better)
Translates to: IQTCSSDLFIVQKVTTASRSKGH*PRSSRI
Trigger: AATCCTGGAGGACCGAGGCCAGTGTCCTTTACTCCT...GGAAGCTGTGGTCACTTTTTGTACAATGAACAAGTCTGAAGAACAAGTCTGAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CCA 90 bp AATAAGAAATTCACTCTCCTTGATGAACATTTGGGAACTTTAAGTGGGTGGGTGAGGAGTAAAGGACACTaGCCTCGGTCCTCCAGGATT +
Preference number: 4 (lower is better)
Translates to: NKKFTLLDEHLGTLSGWVRSKGH*PRSSRI
Trigger: AATCCTGGAGGACCGAGGCCAGTGTCCTTTACTCCT...CACCCACCCACTTAAAGTTCCCAAATGTTCATCAAGGAGAGTGAATTTCTTATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR CCA 90 bp ACACAAGCAAAATCAAGAAAAACACTGGAGTTAAGAGGTGGGTTCCAAACTAACAGGAGTAAAGGACACTaGCCTCGGTCCTCCAGGATT +
Preference number: 4 (lower is better)
Translates to: TQAKSRKTLELRGGFQTNRSKGH*PRSSRI
Trigger: AATCCTGGAGGACCGAGGCCAGTGTCCTTTACTCCT...GTTAGTTTGGAACCCACCTCTTAACTCCAGTGTTTTTCTTGATTTTGCTTGTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CCA 90 bp CCTGCCTCATCCCCTAAAGAAGGAATTCTGCAGCACAGCCAAAACCACCAATGCAAATGGAATCACAAATaGACGAAGAGGAAAGTTTGT +
Preference number: 4 (lower is better)
Translates to: PASSPKEGILQHSQNHQCKWNHK*TKRKVC
Trigger: ACAAACTTTCCTCTTCGTCCATTTGTGATTCCATTT...GCATTGGTGGTTTTGGCTGTGCTGCAGAATTCCTTCTTTAGGGGATGAGGCAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR CCA 90 bp GTAGCTGCCTTTAGATACATCAGGAGAAGGCATCAGATCTCATTACAGATGGTTGACACAGCCATAAGATaGAGGATCCAGAAAGCTGGT +
Preference number: 4 (lower is better)
Translates to: VAAFRYIRRRHQISLQMVDTAIR*RIQKAG
Trigger: ACCAGCTTTCTGGATCCTCCATCTTATGGCTGTGTC...AACCATCTGTAATGAGATCTGATGCCTTCTCCTGATGTATCTAAAGGCAGCTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR TCA 90 bp AATAAGAAATTCACTCTCCTTGATGAACATTTGGGAACTTTAAGTGGGTGGGTGGGGGCAGGTTGGCCTTaGGAAATGGAATCACAAATG +
Preference number: 4 (lower is better)
Translates to: NKKFTLLDEHLGTLSGWVGAGWP*EMESQM
Trigger: CATTTGTGATTCCATTTCTCAAGGCCAACCTGCCCC...CACCCACCCACTTAAAGTTCCCAAATGTTCATCAAGGAGAGTGAATTTCTTATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR TCA 90 bp GATAAGTCTCCTGTAACTCAGGCTTGCTATGCAGCTATGGATAACCTTAAACTTTTCCATGAACCTCCATaGGCAGTTCAGAAGAGTCAG +
Preference number: 4 (lower is better)
Translates to: DKSPVTQACYAAMDNLKLFHEPP*AVQKSQ
Trigger: CTGACTCTTCTGAACTGCTCATGGAGGTTCATGGAA...AAGTTTAAGGTTATCCATAGCTGCATAGCAAGCCTGAGTTACAGGAGACTTATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR TCA 90 bp GTAGCTGCCTTTAGATACATCAGGAGAAGGCATCAGATCTCATTACAGATGGTTCTCTTTCCATTTCCATaGACCTCCATGAGCAGTTCA +
Preference number: 4 (lower is better)
Translates to: VAAFRYIRRRHQISLQMVLFPFP*TSMSSS
Trigger: TGAACTGCTCATGGAGGTTCATGGAAATGGAAAGAG...AACCATCTGTAATGAGATCTGATGCCTTCTCCTGATGTATCTAAAGGCAGCTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR GCA 90 bp GTAGCTGCCTTTAGATACATCAGGAGAAGGCATCAGATCTCATTACAGATGGTTTGGCCTCCTGGAGCTTaGAATGGAATTCTTCAATTG +
Preference number: 4 (lower is better)
Translates to: VAAFRYIRRRHQISLQMVWPPGA*NGILQL
Trigger: CAATTGAAGAATTCCATTGCAAGCTCCAGGAGGCCA...AACCATCTGTAATGAGATCTGATGCCTTCTCCTGATGTATCTAAAGGCAGCTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR GCA 90 bp ACACAAGCAAAATCAAGAAAAACACTGGAGTTAAGAGGTGGGTTCCAAACTAACCAGGAAAGCATCTTCTaGAGCCTGCCGTTTGACATC +
Preference number: 4 (lower is better)
Translates to: TQAKSRKTLELRGGFQTNQESIF*SLPFDI
Trigger: GATGTCAAACGGCAGGCTGCAGAAGATGCTTTCCTG...GTTAGTTTGGAACCCACCTCTTAACTCCAGTGTTTTTCTTGATTTTGCTTGTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CCA 90 bp GTAGCTGCCTTTAGATACATCAGGAGAAGGCATCAGATCTCATTACAGATGGTTAGGGTAGGAGGGGAATaGTTGATGCCATTGCTTAAT +
Preference number: 4 (lower is better)
Translates to: VAAFRYIRRRHQISLQMVRVGGE*LMPLLN
Trigger: ATTAAGCAATGGCATCAACCATTCCCCTCCTACCCT...AACCATCTGTAATGAGATCTGATGCCTTCTCCTGATGTATCTAAAGGCAGCTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR TCA 90 bp ATTAATGCTGGCATTTCCTCTAAATTTTCTTCCAGTCCTTTTGAGACTAACAGCCTCGCCGATCTCAGGTaGGATATCATTGCCAAACTG +
Preference number: 4 (lower is better)
Translates to: INAGISSKFSSSPFETNSLADLR*DIIAKL
Trigger: CAGTTTGGCAATGATATCTCACCTGAGATCGGCGAG...GCTGTTAGTCTCAAAAGGACTGGAAGAAAATTTAGAGGAAATGCCAGCATTAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR TCA 90 bp ACACAAGCAAAATCAAGAAAAACACTGGAGTTAAGAGGTGGGTTCCAAACTAACAGCCTTCTGTACCTCTaGCATGGCCTGAATTTTCAC +
Preference number: 4 (lower is better)
Translates to: TQAKSRKTLELRGGFQTNSLLYL*HGLNFH
Trigger: GTGAAAATTCAGGCCATGTCAGAGGTACAGAAGGCT...GTTAGTTTGGAACCCACCTCTTAACTCCAGTGTTTTTCTTGATTTTGCTTGTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR GCA 90 bp ATTCAGACTTGTTCTTCAGACTTGTTCATTGTACAAAAAGTGACCACAGCTTCCCAGGTGAGATATCATTaGCAAACTGCTGCAGAGTGG +
Preference number: 4 (lower is better)
Translates to: IQTCSSDLFIVQKVTTASQVRYH*QTAAEW
Trigger: CCACTCTGCAGCAGTTTGGCAATGATATCTCACCTG...GGAAGCTGTGGTCACTTTTTGTACAATGAACAAGTCTGAAGAACAAGTCTGAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR GCA 90 bp ACACAAGCAAAATCAAGAAAAACACTGGAGTTAAGAGGTGGGTTCCAAACTAACAGACTAAGATTGTGGTaGCTCTCACGAACTTCTCGG +
Preference number: 4 (lower is better)
Translates to: TQAKSRKTLELRGGFQTNRLRLW*LSRTSR
Trigger: CCGAGAAGTTCGTGAGAGGCACCACAATCTTAGTCT...GTTAGTTTGGAACCCACCTCTTAACTCCAGTGTTTTTCTTGATTTTGCTTGTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CCA 90 bp ACACAAGCAAAATCAAGAAAAACACTGGAGTTAAGAGGTGGGTTCCAAACTAACGAAGAGGAAAGTTTGTaGCCTCCTGGAGCTTGCAAT +
Preference number: 4 (lower is better)
Translates to: TQAKSRKTLELRGGFQTNEEESL*PPGACN
Trigger: ATTGCAAGCTCCAGGAGGCCACAAACTTTCCTCTTC...GTTAGTTTGGAACCCACCTCTTAACTCCAGTGTTTTTCTTGATTTTGCTTGTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR TCA 90 bp ACACAAGCAAAATCAAGAAAAACACTGGAGTTAAGAGGTGGGTTCCAAACTAACCTCTTTCCATTTCCATaGACCTCCATGAGCAGTTCA +
Preference number: 4 (lower is better)
Translates to: TQAKSRKTLELRGGFQTNLFPFP*TSMSSS
Trigger: TGAACTGCTCATGGAGGTTCATGGAAATGGAAAGAG...GTTAGTTTGGAACCCACCTCTTAACTCCAGTGTTTTTCTTGATTTTGCTTGTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR GCA 90 bp ACTGGTGTGCAGAACTCCCAGTTTGGCTACTTTTGTTATTTACTTCCTGAAATTTGGCCTCCTGGAGCTTaGAATGGAATTCTTCAATTG +
Preference number: 4 (lower is better)
Translates to: TGVQNSQFGYFCYLLPEIWPPGA*NGILQL
Trigger: CAATTGAAGAATTCCATTGCAAGCTCCAGGAGGCCA...AATTTCAGGAAGTAAATAACAAAAGTAGCCAAACTGGGAGTTCTGCACACCAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR GCA 90 bp ATTAATGCTGGCATTTCCTCTAAATTTTCTTCCAGTCCTTTTGAGACTAACAGCAGACTAAGATTGTGGTaGCTCTCACGAACTTCTCGG +
Preference number: 4 (lower is better)
Translates to: INAGISSKFSSSPFETNSRLRLW*LSRTSR
Trigger: CCGAGAAGTTCGTGAGAGGCACCACAATCTTAGTCT...GCTGTTAGTCTCAAAAGGACTGGAAGAAAATTTAGAGGAAATGCCAGCATTAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR GCA 90 bp ACTGGTGTGCAGAACTCCCAGTTTGGCTACTTTTGTTATTTACTTCCTGAAATTTCTGTGGACTCTTCTTaGTCATTGATGACCAGGAAA +
Preference number: 4 (lower is better)
Translates to: TGVQNSQFGYFCYLLPEISVDSS*SLMTRK
Trigger: TTTCCTGGTCATCAATGAGCAAGAAGAGTCCACAGA...AATTTCAGGAAGTAAATAACAAAAGTAGCCAAACTGGGAGTTCTGCACACCAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR GCA 90 bp ATTCAGACTTGTTCTTCAGACTTGTTCATTGTACAAAAAGTGACCACAGCTTCCTCTGTGGACTCTTCTTaGTCATTGATGACCAGGAAA +
Preference number: 4 (lower is better)
Translates to: IQTCSSDLFIVQKVTTASSVDSS*SLMTRK
Trigger: TTTCCTGGTCATCAATGAGCAAGAAGAGTCCACAGA...GGAAGCTGTGGTCACTTTTTGTACAATGAACAAGTCTGAAGAACAAGTCTGAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CCA 90 bp ACTGGTGTGCAGAACTCCCAGTTTGGCTACTTTTGTTATTTACTTCCTGAAATTGTTGGCCTTGAGAAATaGAATCACAAATGGACGAAG +
Preference number: 4 (lower is better)
Translates to: TGVQNSQFGYFCYLLPEIVGLEK*NHKWTK
Trigger: CTTCGTCCATTTGTGATTCCATTTCTCAAGGCCAAC...AATTTCAGGAAGTAAATAACAAAAGTAGCCAAACTGGGAGTTCTGCACACCAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR GCA 90 bp ACTGGTGTGCAGAACTCCCAGTTTGGCTACTTTTGTTATTTACTTCCTGAAATTCATAATGCAATTCAGTaGATGGTCAAGGTGTTTCCA +
Preference number: 4 (lower is better)
Translates to: TGVQNSQFGYFCYLLPEIHNAIQ*MVKVFP
Trigger: TGGAAACACCTTGACCATGCACTGAATTGCATTATG...AATTTCAGGAAGTAAATAACAAAAGTAGCCAAACTGGGAGTTCTGCACACCAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CCA 90 bp ACACAAGCAAAATCAAGAAAAACACTGGAGTTAAGAGGTGGGTTCCAAACTAACAAATGGAATCACAAATaGACGAAGAGGAAAGTTTGT +
Preference number: 4 (lower is better)
Translates to: TQAKSRKTLELRGGFQTNKWNHK*TKRKVC
Trigger: ACAAACTTTCCTCTTCGTCCATTTGTGATTCCATTT...GTTAGTTTGGAACCCACCTCTTAACTCCAGTGTTTTTCTTGATTTTGCTTGTGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
3UTR CAA 72 bp TCCAATAATGACCAGATCGATGTCTCCAAATTCTATTaGGAGAATCAGATAATTGGAAAAGTTCCTGAAGAT +
Preference number: 4 (lower is better)
Translates to: SNNDQIDVSKFY*ENQIIGKVPED
Trigger: ATCTTCAGGAACTTTTCCAATTATCTGATTCTCCAAATAGAATTTGGAGACATCGATCTGGTCATTATTGGA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS CCA 90 bp AGCAGTGGCCTGCTCTGGCTGTGGGGACTGTGGCCATGTAGACTCTaGCCACAGAGGCGGTGGTGCCGCTCCCAGTCCTTATGCTGGCAG +
Preference number: 5 (lower is better)
Translates to: SSGLLWLWGLWPCRL*PQRRWCRSQSLCWQ
Trigger: CTGCCAGCATAAGGACTGGGAGCGGCACCACCGCCTCTGTGGCCAGAGTCTACATGGCCACAGTCCCCACAGCCAGAGCAGGCCACTGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS GCA 90 bp AACTGGCCCCCAGGATTCATAAGGGGAACAGTGAGGGCGGGACTGTaGCGAGGAGCAGGGCTGATAGTACACACTCTCTTGGCAGGCGGT +
Preference number: 5 (lower is better)
Translates to: NWPPGFIRGTVRAGL*RGAGLIVHTLLAGG
Trigger: ACCGCCTGCCAAGAGAGTGTGTACTATCAGCCCTGCTCCTCGGCACAGTCCCGCCCTCACTGTTCCCCTTATGAATCCTGGGGGCCAGTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000099178.10
ENSMUST00000109725.8
CDS-3UTR CAA 90 bp CCCACTAGACTGATGGGATGGGACCAGGGAGGCCAGGCTGTACTAAGCTGTCTGGAGGAGGCAGGCCCATaGCTGAATCTCTGTGGTGGC +
Preference number: 5 (lower is better)
Translates to: PTRLMGWDQGGQAVLSCLEEAGP*LNLCGG
Trigger: GCCACCACAGAGATTCAGCAATGGGCCTGCCTCCTC...CAGACAGCTTAGTACAGCCTGGCCTCCCTGGTCCCATCCCATCAGTCTAGTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CAA 90 bp TACTCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGAAGGACACTGGGACGGGGTCTGCTaGGCAGCCCGGGCACAGTGC +
Preference number: 5 (lower is better)
Translates to: YSQDIPKDPDMQSQREGHWDGVC*AARAQC
Trigger: GCACTGTGCCCGGGCTGCCAAGCAGACCCCGTCCCA...GTGTCCTTCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGAGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CAA 90 bp GAGGAACCTCAGGAAAGCCATGGAGGAGGCAGCTCAAGCTACTTCCTGTGTGCAGTGGTAGCTGAGGTCTaGTCCAGGGCTGGGCTGGGC +
Preference number: 5 (lower is better)
Translates to: EEPQESHGGGSSSYFLCAVVAEV*SRAGLG
Trigger: GCCCAGCCCAGCCCTGGACAAGACCTCAGCTACCAC...TGCACACAGGAAGTAGCTTGAGCTGCCTCCTCCATGGCTTTCCTGAGGTTCCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS CCA 90 bp AATCTCTGTGGTGGCGATGGGGCACCATTCAGGGTAGGAGGGGAATaGTTGATGCCATTGCTTAGTTGGAAGGCGGCCGCTCCAGGGACG +
Preference number: 5 (lower is better)
Translates to: NLCGGDGAPFRVGGE*LMPLLSWKAAAPGT
Trigger: CGTCCCTGGAGCGGCCGCCTTCCAACTAAGCAATGGCATCAACCATTCCCCTCCTACCCTGAATGGTGCCCCATCGCCACCACAGAGATT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109724.2
CDS-3UTR CAA 90 bp GGTGGGTGGAAAAAGAGTGTGATCACAGATGGCCTGTCATTCAGCTGTGCCTTTTGGGACGGGGTCTGCTaGGCAGCCCGGGCACAGTGC +
Preference number: 5 (lower is better)
Translates to: GGWKKSVITDGLSFSCAFWDGVC*AARAQC
Trigger: GCACTGTGCCCGGGCTGCCAAGCAGACCCCGTCCCA...AAAGGCACAGCTGAATGACAGGCCATCTGTGATCACACTCTTTTTCCACCCACC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR CAA 90 bp ACCTGGGTAGGACACAGAAGCAAAGCAGTCCCCAACAGCACTATAGAAACTCAGTGGGACGGGGTCTGCTaGGCAGCCCGGGCACAGTGC +
Preference number: 5 (lower is better)
Translates to: TWVGHRSKAVPNSTIETQWDGVC*AARAQC
Trigger: GCACTGTGCCCGGGCTGCCAAGCAGACCCCGTCCCA...CTGAGTTTCTATAGTGCTGTTGGGGACTGCTTTGCTTCTGTGTCCTACCCAGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CAA 90 bp CCTTTGGAAGAGCAGCCAGTGCTCTTACCCGCTGAGTCATGTCTCCAGCCCCGGGATGCGATACTGGTGTaGAGCAGAAGGTGCTCATGC +
Preference number: 5 (lower is better)
Translates to: PLEEQPVLLPAESCLQPRDAILV*SRRCSC
Trigger: GCATGAGCACCTTCTGCTCAACACCAGTATCGCATC...CCGGGGCTGGAGACATGACTCAGCGGGTAAGAGCACTGGCTGCTCTTCCAAAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR CAA 90 bp CCCACTAGACTGATGGGATGGGACCAGGGAGGCCAGGCTGTACTAAGCTGTCTGGATGCGATACTGGTGTaGAGCAGAAGGTGCTCATGC +
Preference number: 5 (lower is better)
Translates to: PTRLMGWDQGGQAVLSCLDAILV*SRRCSC
Trigger: GCATGAGCACCTTCTGCTCAACACCAGTATCGCATC...CAGACAGCTTAGTACAGCCTGGCCTCCCTGGTCCCATCCCATCAGTCTAGTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CAA 90 bp TCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGAAGGACACATAGTGGTAGCTGAGGTCTaGTCCAGGGCTGGGCTGGGC +
Preference number: 5 (lower is better)
Translates to: SQDIPKDPDMQSQREGHIVVAEV*SRAGLG
Trigger: GCCCAGCCCAGCCCTGGACAAGACCTCAGCTACCAC...TATGTGTCCTTCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CAA 90 bp TACTCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGAAGGACACGAGGAGGCAGGCCCATaGCTGAATCTCTGTGGTGGC +
Preference number: 5 (lower is better)
Translates to: YSQDIPKDPDMQSQREGHEEAGP*LNLCGG
Trigger: GCCACCACAGAGATTCAGCAATGGGCCTGCCTCCTC...GTGTCCTTCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGAGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CAA 90 bp CCTGCCTCATCCCCTAAAGAAGGAATTCTGCAGCACAGCCAAAACCACCAATGCGAGGAGGCAGGCCCATaGCTGAATCTCTGTGGTGGC +
Preference number: 5 (lower is better)
Translates to: PASSPKEGILQHSQNHQCEEAGP*LNLCGG
Trigger: GCCACCACAGAGATTCAGCAATGGGCCTGCCTCCTC...GCATTGGTGGTTTTGGCTGTGCTGCAGAATTCCTTCTTTAGGGGATGAGGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR CAA 90 bp CCTTTGGAAGAGCAGCCAGTGCTCTTACCCGCTGAGTCATGTCTCCAGCCCCGGTCAGGTGAGATATCATaGCCAAACTGCTGCAGAGTG +
Preference number: 5 (lower is better)
Translates to: PLEEQPVLLPAESCLQPRSGEIS*PNCCRV
Trigger: CACTCTGCAGCAGTTTGGCAATGATATCTCACCTGA...CCGGGGCTGGAGACATGACTCAGCGGGTAAGAGCACTGGCTGCTCTTCCAAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR CAA 90 bp CCCACTAGACTGATGGGATGGGACCAGGGAGGCCAGGCTGTACTAAGCTGTCTGCGGTGTTCTAGCATCTaGTTTGGTTCCCGATACAGG +
Preference number: 5 (lower is better)
Translates to: PTRLMGWDQGGQAVLSCLRCSSI*FGSRYR
Trigger: CCTGTATCGGGAACCAAACAAGATGCTAGAACACCG...CAGACAGCTTAGTACAGCCTGGCCTCCCTGGTCCCATCCCATCAGTCTAGTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CAA 90 bp GGATGGGACCAGGGAGGCCAGGCTGTACTAAGCTGTCTGGCAAACAGTGGGTCTCACTTCAAAGGCTTTTaGCTCTGCCTCAGCTACAGC +
Preference number: 5 (lower is better)
Translates to: GWDQGGQAVLSCLANSGSHFKGF*LCLSYS
Trigger: GCTGTAGCTGAGGCAGAGCAAAAAGCCTTTGAAGTG...AGACCCACTGTTTGCCAGACAGCTTAGTACAGCCTGGCCTCCCTGGTCCCATCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CAA 90 bp CAGAACCTACTCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGACAGGCGATCCAGGCATaGCTGGCACCCTTTTCTCAC +
Preference number: 5 (lower is better)
Translates to: QNLLTRHPQGSRHAVPERQAIQA*LAPFSH
Trigger: GTGAGAAAAGGGTGCCAGCAATGCCTGGATCGCCTG...TCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGAGTAGGTTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CAA 90 bp GGATGGGACCAGGGAGGCCAGGCTGTACTAAGCTGTCTGGCAAACAGTGGGTCTTGGGAGGTGAGGATCTaGACTGTATCTTCACTTCCA +
Preference number: 5 (lower is better)
Translates to: GWDQGGQAVLSCLANSGSWEVRI*TVSSLP
Trigger: TGGAAGTGAAGATACAGTCAAGATCCTCACCTCCCA...AGACCCACTGTTTGCCAGACAGCTTAGTACAGCCTGGCCTCCCTGGTCCCATCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CAA 90 bp GGATGGGACCAGGGAGGCCAGGCTGTACTAAGCTGTCTGGCAAACAGTGGGTCTGTAGGAGGGGAATGGTaGATGCCATTGCTTAATGCT +
Preference number: 5 (lower is better)
Translates to: GWDQGGQAVLSCLANSGSVGGEW*MPLLNA
Trigger: AGCATTAAGCAATGGCATCAACCATTCCCCTCCTAC...AGACCCACTGTTTGCCAGACAGCTTAGTACAGCCTGGCCTCCCTGGTCCCATCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CAA 90 bp TCGGGACCTTTGGAAGAGCAGCCAGTGCTCTTACCCGCTGAGTCATGTCTCCAGCGGTGTTCTAGCATCTaGTTTGGTTCCCGATACAGG +
Preference number: 5 (lower is better)
Translates to: SGPLEEQPVLLPAESCLQRCSSI*FGSRYR
Trigger: CCTGTATCGGGAACCAAACAAGATGCTAGAACACCG...CTGGAGACATGACTCAGCGGGTAAGAGCACTGGCTGCTCTTCCAAAGGTCCCGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR CAA 90 bp GGGTGGATATGGGGCTCAAGGAACTGTTTGAAGACAGGGGAAGGAAGGGCCTCCCACTTCAAAGGCTTTTaGCTCTGCCTCAGCTACAGC +
Preference number: 5 (lower is better)
Translates to: GWIWGSRNCLKTGEGRASHFKGF*LCLSYS
Trigger: GCTGTAGCTGAGGCAGAGCAAAAAGCCTTTGAAGTG...GGAGGCCCTTCCTTCCCCTGTCTTCAAACAGTTCCTTGAGCCCCATATCCACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CAA 90 bp TCCTGCGGGTGGCTTCACATTCATCACCCGCCTCTGCAAACCATGCTTGCAGGATCAGGTGAGATATCATaGCCAAACTGCTGCAGAGTG +
Preference number: 5 (lower is better)
Translates to: SCGWLHIHHPPLQTMLAGSGEIS*PNCCRV
Trigger: CACTCTGCAGCAGTTTGGCAATGATATCTCACCTGA...TCCTGCAAGCATGGTTTGCAGAGGCGGGTGATGAATGTGAAGCCACCCGCAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CAA 90 bp CCATTGGAGCCTAAATTTCTCCTCCTCAAGGCAGGGTACAAAAGCTCTGGCCTGGACGAAGAGGAAAGTTaGTGGCCTCCTGGAGCTTGC +
Preference number: 5 (lower is better)
Translates to: PLEPKFLLLKAGYKSSGLDEEES*WPPGAC
Trigger: GCAAGCTCCAGGAGGCCACAAACTTTCCTCTTCGTC...CAGGCCAGAGCTTTTGTACCCTGCCTTGAGGAGGAGAAATTTAGGCTCCAATGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR CAA 90 bp CAGAACCTACTCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGAGACGAAGAGGAAAGTTaGTGGCCTCCTGGAGCTTGC +
Preference number: 5 (lower is better)
Translates to: QNLLTRHPQGSRHAVPERDEEES*WPPGAC
Trigger: GCAAGCTCCAGGAGGCCACAAACTTTCCTCTTCGTC...TCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGAGTAGGTTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CAA 90 bp GTGCCAAACAGAACCTACTCACAAGACATCCCCAAGGATCCAGACATGCAGTCCGACGAAGAGGAAAGTTaGTGGCCTCCTGGAGCTTGC +
Preference number: 5 (lower is better)
Translates to: VPNRTYSQDIPKDPDMQSDEEES*WPPGAC
Trigger: GCAAGCTCCAGGAGGCCACAAACTTTCCTCTTCGTC...GGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGAGTAGGTTCTGTTTGGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CAA 90 bp ACCTGGGTAGGACACAGAAGCAAAGCAGTCCCCAACAGCACTATAGAAACTCAGTCTGCAGCCTGCCGTTaGACATCCGCTATGGTCTGC +
Preference number: 5 (lower is better)
Translates to: TWVGHRSKAVPNSTIETQSAACR*TSAMVC
Trigger: GCAGACCATAGCGGATGTCAAACGGCAGGCTGCAGA...CTGAGTTTCTATAGTGCTGTTGGGGACTGCTTTGCTTCTGTGTCCTACCCAGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CAA 90 bp TTCAGTTCCTTCTGGCTTTTCTCACATTTGGTTCAAACATGCCACCACCCAGTTGTGGTAGCTGAGGTCTaGTCCAGGGCTGGGCTGGGC +
Preference number: 5 (lower is better)
Translates to: FSSFWLFSHLVQTCHHPVVVAEV*SRAGLG
Trigger: GCCCAGCCCAGCCCTGGACAAGACCTCAGCTACCAC...AACTGGGTGGTGGCATGTTTGAACCAAATGTGAGAAAAGCCAGAAGGAACTGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS TCA 90 bp TCCACAGGCACATATCCTGTTGCTGGTCTACTGGTAAATTCCCGCTaGGAATCGTTGCTGAGAGAATCTGTACTCCCAGGGCTGTGCTGC +
Preference number: 5 (lower is better)
Translates to: STGTYPVAGLLVNSR*ESLLRESVLPGLCC
Trigger: GCAGCACAGCCCTGGGAGTACAGATTCTCTCAGCAACGATTCTCAGCGGGAATTTACCAGTAGACCAGCAACAGGATATGTGCCTGTGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS GCA 90 bp GACTCTTCTTGCTCATTGATGACCAGGAAAGCATCTTCTGCAGCCTaGCGTTTGACATCCGCTATGGTCTGCTCCATTCGAGCTCTCTCC +
Preference number: 5 (lower is better)
Translates to: DSSCSLMTRKASSAA*RLTSAMVCSIRALS
Trigger: GGAGAGAGCTCGAATGGAGCAGACCATAGCGGATGTCAAACGGCAGGCTGCAGAAGATGCTTTCCTGGTCATCAATGAGCAAGAAGAGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS GCA 90 bp CTCTGTGGACTCTTCTTGCTCATTGATGACCAGGAAAGCATCTTCTaGAGCCTGCCGTTTGACATCCGCTATGGTCTGCTCCATTCGAGC +
Preference number: 5 (lower is better)
Translates to: LCGLFLLIDDQESIF*SLPFDIRYGLLHSS
Trigger: GCTCGAATGGAGCAGACCATAGCGGATGTCAAACGGCAGGCTGCAGAAGATGCTTTCCTGGTCATCAATGAGCAAGAAGAGTCCACAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS CCA 90 bp AATCTCTGTGGTGGCGATGGGGCACCATTCAGGGTAGGAGGGGAATaGTTGATGCCATTGCTTAATGCTGTAGGAGTAAAGGACACTGGC +
Preference number: 5 (lower is better)
Translates to: NLCGGDGAPFRVGGE*LMPLLNAVGVKDTG
Trigger: GCCAGTGTCCTTTACTCCTACAGCATTAAGCAATGGCATCAACCATTCCCCTCCTACCCTGAATGGTGCCCCATCGCCACCACAGAGATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000045270.15
ENSMUST00000099178.10
ENSMUST00000109725.8
ENSMUST00000155202.2
CDS-3UTR CAA 90 bp AACCCACAATCCTGTCTGCAGTTTTCAGAACGAAGGCCATCTGCTCACTCCTTATTTCTCACAACCAAGTaGGAAGGCGGCCGCTCCAGG +
Preference number: 5 (lower is better)
Translates to: NPQSCLQFSERRPSAHSLFLTTK*EGGRSR
Trigger: CCTGGAGCGGCCGCCTTCCAACTTGGTTGTGAGAAA...TAAGGAGTGAGCAGATGGCCTTCGTTCTGAAAACTGCAGACAGGATTGTGGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CAA 90 bp AACCCACAATCCTGTCTGCAGTTTTCAGAACGAAGGCCATCTGCTCACTCCTTATCTGCAGCCTGCCGTTaGACATCCGCTATGGTCTGC +
Preference number: 5 (lower is better)
Translates to: NPQSCLQFSERRPSAHSLSAACR*TSAMVC
Trigger: GCAGACCATAGCGGATGTCAAACGGCAGGCTGCAGA...TAAGGAGTGAGCAGATGGCCTTCGTTCTGAAAACTGCAGACAGGATTGTGGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS GCA 90 bp CCGTTTGACATCCGCTATGGTCTGCTCCATTCGAGCTCTCTCCGTTaGAATCACTTCAAAGGCTTTTTGCTCTGCCTCAGCTACAGCCTT +
Preference number: 5 (lower is better)
Translates to: PFDIRYGLLHSSSLR*NHFKGFLLCLSYSL
Trigger: AAGGCTGTAGCTGAGGCAGAGCAAAAAGCCTTTGAAGTGATTGCAACGGAGAGAGCTCGAATGGAGCAGACCATAGCGGATGTCAAACGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS GCA 90 bp AGTGTCAGCAAACCGTTGCTGAGAGAATCTGTACTCCCAGGGCTGTaGTGCCTAGAGACCAACTCAGTCCCAGTTTTCCTCAACTCTGTA +
Preference number: 5 (lower is better)
Translates to: SVSKPLLRESVLPGL*CLETNSVPVFLNSV
Trigger: TACAGAGTTGAGGAAAACTGGGACTGAGTTGGTCTCTAGGCAGCACAGCCCTGGGAGTACAGATTCTCTCAGCAACGGTTTGCTGACACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS GCA 90 bp AGGAAAGCATCTTCTGCAGCCTGCCGTTTGACATCCGCTATGGTCTaGTCCATTCGAGCTCTCTCCGTTGCAATCACTTCAAAGGCTTTT +
Preference number: 5 (lower is better)
Translates to: RKASSAACRLTSAMV*SIRALSVAITSKAF
Trigger: AAAAGCCTTTGAAGTGATTGCAACGGAGAGAGCTCGAATGGAGCAGACCATAGCGGATGTCAAACGGCAGGCTGCAGAAGATGCTTTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS GCA 90 bp GTCAGCAAACCGTTGCTGAGAGAATCTGTACTCCCAGGGCTGTGCTaGCTAGAGACCAACTCAGTCCCAGTTTTCCTCAACTCTGTATTT +
Preference number: 5 (lower is better)
Translates to: VSKPLLRESVLPGLC*LETNSVPVFLNSVF
Trigger: AAATACAGAGTTGAGGAAAACTGGGACTGAGTTGGTCTCTAGGCAGCACAGCCCTGGGAGTACAGATTCTCTCAGCAACGGTTTGCTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR CAA 90 bp TACTCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGAAGGACACAGGGGCAGGTTGGCCTaGAGAAATGGAATCACAAAT +
Preference number: 5 (lower is better)
Translates to: YSQDIPKDPDMQSQREGHRGRLA*RNGITN
Trigger: ATTTGTGATTCCATTTCTCAAGGCCAACCTGCCCCT...GTGTCCTTCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGAGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CAA 90 bp CAGAACCTACTCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGACCATTGAGACTAAGATaGTGGTGCCTCTCACGAACT +
Preference number: 5 (lower is better)
Translates to: QNLLTRHPQGSRHAVPERPLRLR*WCLSRT
Trigger: AGTTCGTGAGAGGCACCACAATCTTAGTCTCAATGG...TCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGAGTAGGTTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CAA 90 bp TACTCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGAAGGACACTTCGAGCTCTCTCCGTaGCAATCACTTCAAAGGCTT +
Preference number: 5 (lower is better)
Translates to: YSQDIPKDPDMQSQREGHFELSP*QSLQRL
Trigger: AAGCCTTTGAAGTGATTGCAACGGAGAGAGCTCGAA...GTGTCCTTCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGAGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CAA 90 bp TCACAAGACATCCCCAAGGATCCAGACATGCAGTCCCAGAGAGAAGGACACATACCATTGAGACTAAGATaGTGGTGCCTCTCACGAACT +
Preference number: 5 (lower is better)
Translates to: SQDIPKDPDMQSQREGHIPLRLR*WCLSRT
Trigger: AGTTCGTGAGAGGCACCACAATCTTAGTCTCAATGG...TATGTGTCCTTCTCTCTGGGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CAA 90 bp GTGCCAAACAGAACCTACTCACAAGACATCCCCAAGGATCCAGACATGCAGTCCGTCTACCAACTCATCTaGATAGCCTCCATTGAGACT +
Preference number: 5 (lower is better)
Translates to: VPNRTYSQDIPKDPDMQSVYQLI*IASIET
Trigger: AGTCTCAATGGAGGCTATCAAGATGAGTTGGTAGAC...GGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGAGTAGGTTCTGTTTGGCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS GCA 90 bp CACGGCTTCTGTTTTCTTCCAAAACTCCACAGGCACATATCCTGTTaGTGGTCTACTGGTAAATTCCCGCTGAGAATCGTTGCTGAGAGA +
Preference number: 5 (lower is better)
Translates to: HGFCFLPKLHRHISC*WSTGKFPLRIVAER
Trigger: TCTCTCAGCAACGATTCTCAGCGGGAATTTACCAGTAGACCAGCAACAGGATATGTGCCTGTGGAGTTTTGGAAGAAAACAGAAGCCGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CAA 90 bp TCAGCTTCTGGGGAAAGTGATGGAACATTTTGGGTGGGATATCTCTGGCTTCCTTGGGAGGTGAGGATCTaGACTGTATCTTCACTTCCA +
Preference number: 5 (lower is better)
Translates to: SASGESDGTFWVGYLWLPWEVRI*TVSSLP
Trigger: TGGAAGTGAAGATACAGTCAAGATCCTCACCTCCCA...AGGAAGCCAGAGATATCCCACCCAAAATGTTCCATCACTTTCCCCAGAAGCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR CAA 90 bp CCATTGGAGCCTAAATTTCTCCTCCTCAAGGCAGGGTACAAAAGCTCTGGCCTGGAATGGTTGATGCCATaGCTTAATGCTGTAGGAGTA +
Preference number: 5 (lower is better)
Translates to: PLEPKFLLLKAGYKSSGLEWLMP*LNAVGV
Trigger: TACTCCTACAGCATTAAGCAATGGCATCAACCATTC...CAGGCCAGAGCTTTTGTACCCTGCCTTGAGGAGGAGAAATTTAGGCTCCAATGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR CAA 90 bp GTGCCAAACAGAACCTACTCACAAGACATCCCCAAGGATCCAGACATGCAGTCCGAATGGTTGATGCCATaGCTTAATGCTGTAGGAGTA +
Preference number: 5 (lower is better)
Translates to: VPNRTYSQDIPKDPDMQSEWLMP*LNAVGV
Trigger: TACTCCTACAGCATTAAGCAATGGCATCAACCATTC...GGACTGCATGTCTGGATCCTTGGGGATGTCTTGTGAGTAGGTTCTGTTTGGCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CAA 90 bp AAAGTGATGGAACATTTTGGGTGGGATATCTCTGGCTTCCTGGATGTACCCGCTGTAGGAGGGGAATGGTaGATGCCATTGCTTAATGCT +
Preference number: 5 (lower is better)
Translates to: KVMEHFGWDISGFLDVPAVGGEW*MPLLNA
Trigger: AGCATTAAGCAATGGCATCAACCATTCCCCTCCTAC...AGCGGGTACATCCAGGAAGCCAGAGATATCCCACCCAAAATGTTCCATCACTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR CAA 90 bp AAAGTGATGGAACATTTTGGGTGGGATATCTCTGGCTTCCTGGATGTACCCGCTCCATTGAGACTAAGATaGTGGTGCCTCTCACGAACT +
Preference number: 5 (lower is better)
Translates to: KVMEHFGWDISGFLDVPAPLRLR*WCLSRT
Trigger: AGTTCGTGAGAGGCACCACAATCTTAGTCTCAATGG...AGCGGGTACATCCAGGAAGCCAGAGATATCCCACCCAAAATGTTCCATCACTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR CAA 90 bp AACCCACAATCCTGTCTGCAGTTTTCAGAACGAAGGCCATCTGCTCACTCCTTATTCGAGCTCTCTCCGTaGCAATCACTTCAAAGGCTT +
Preference number: 5 (lower is better)
Translates to: NPQSCLQFSERRPSAHSLFELSP*QSLQRL
Trigger: AAGCCTTTGAAGTGATTGCAACGGAGAGAGCTCGAA...TAAGGAGTGAGCAGATGGCCTTCGTTCTGAAAACTGCAGACAGGATTGTGGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS GCA 90 bp GGCTTCTTCTGTTTTCTTCCAAAACTCCACAGGCACATATCCTGTTaGTGGTCTACTGGTAAATTCCCGCTGAGAATCGTTGCTGAGAGA +
Preference number: 5 (lower is better)
Translates to: GFFCFLPKLHRHISC*WSTGKFPLRIVAER
Trigger: TCTCTCAGCAACGATTCTCAGCGGGAATTTACCAGTAGACCAGCAACAGGATATGTGCCTGTGGAGTTTTGGAAGAAAACAGAAGAAGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045270.15
CDS CCA 90 bp GGCTTCTGTTTTCTTCCAAAACTCCACAGGCACATATCCTGTTGCTaGTCTACTGGTAAATTCCCGCTGAGAATCGTTGCTGAGAGAATC +
Preference number: 5 (lower is better)
Translates to: GFCFLPKLHRHISCC*STGKFPLRIVAERI
Trigger: GATTCTCTCAGCAACGATTCTCAGCGGGAATTTACCAGTAGACCAGCAACAGGATATGTGCCTGTGGAGTTTTGGAAGAAAACAGAAGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CAA 90 bp AATAAGAAATTCACTCTCCTTGATGAACATTTGGGAACTTTAAGTGGGTGGGTGTTTCTCACAACCAAGTaGGAAGGCGGCCGCTCCAGG +
Preference number: 5 (lower is better)
Translates to: NKKFTLLDEHLGTLSGWVFLTTK*EGGRSR
Trigger: CCTGGAGCGGCCGCCTTCCAACTTGGTTGTGAGAAA...CACCCACCCACTTAAAGTTCCCAAATGTTCATCAAGGAGAGTGAATTTCTTATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR CAA 90 bp ACACAAGCAAAATCAAGAAAAACACTGGAGTTAAGAGGTGGGTTCCAAACTAACTTTCTCACAACCAAGTaGGAAGGCGGCCGCTCCAGG +
Preference number: 5 (lower is better)
Translates to: TQAKSRKTLELRGGFQTNFLTTK*EGGRSR
Trigger: CCTGGAGCGGCCGCCTTCCAACTTGGTTGTGAGAAA...GTTAGTTTGGAACCCACCTCTTAACTCCAGTGTTTTTCTTGATTTTGCTTGTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CAA 90 bp AATAAGAAATTCACTCTCCTTGATGAACATTTGGGAACTTTAAGTGGGTGGGTGCAGGCGATCCAGGCATaGCTGGCACCCTTTTCTCAC +
Preference number: 5 (lower is better)
Translates to: NKKFTLLDEHLGTLSGWVQAIQA*LAPFSH
Trigger: GTGAGAAAAGGGTGCCAGCAATGCCTGGATCGCCTG...CACCCACCCACTTAAAGTTCCCAAATGTTCATCAAGGAGAGTGAATTTCTTATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR CAA 90 bp AAAGTGATGGAACATTTTGGGTGGGATATCTCTGGCTTCCTGGATGTACCCGCTGTCTACCAACTCATCTaGATAGCCTCCATTGAGACT +
Preference number: 5 (lower is better)
Translates to: KVMEHFGWDISGFLDVPAVYQLI*IASIET
Trigger: AGTCTCAATGGAGGCTATCAAGATGAGTTGGTAGAC...AGCGGGTACATCCAGGAAGCCAGAGATATCCCACCCAAAATGTTCCATCACTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR CAA 90 bp TTCAGTTCCTTCTGGCTTTTCTCACATTTGGTTCAAACATGCCACCACCCAGTTCACTTCAAAGGCTTTTaGCTCTGCCTCAGCTACAGC +
Preference number: 5 (lower is better)
Translates to: FSSFWLFSHLVQTCHHPVHFKGF*LCLSYS
Trigger: GCTGTAGCTGAGGCAGAGCAAAAAGCCTTTGAAGTG...AACTGGGTGGTGGCATGTTTGAACCAAATGTGAGAAAAGCCAGAAGGAACTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CAA 90 bp ACCTGGGTAGGACACAGAAGCAAAGCAGTCCCCAACAGCACTATAGAAACTCAGGCCTCCATTGAGACCTaGAGAAATGGAATCACAAAT +
Preference number: 5 (lower is better)
Translates to: TWVGHRSKAVPNSTIETQASIET*RNGITN
Trigger: ATTTGTGATTCCATTTCTCAAGGTCTCAATGGAGGC...CTGAGTTTCTATAGTGCTGTTGGGGACTGCTTTGCTTCTGTGTCCTACCCAGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137526.2
CDS GCA 90 bp ATAGTTGAGTTCTTCACGGTCAGATTCCTGACAGCGCCTCAGAACTaGCATGGAGCGCCTAGTTTTCTCTACCATTTCCATAATGCAATT +
Preference number: 5 (lower is better)
Translates to: IVEFFTVRFLTAPQN*HGAPSFLYHFHNAI
Trigger: AATTGCATTATGGAAATGGTAGAGAAAACTAGGCGCTCCATGGCAGTTCTGAGGCGCTGTCAGGAATCTGACCGTGAAGAACTCAACTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045270.15
ENSMUST00000099178.10
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CAA 90 bp ACCTGGGTAGGACACAGAAGCAAAGCAGTCCCCAACAGCACTATAGAAACTCAGCTTCAATTGTTACTGTaGAGTTCACCAAGGCTAGAA +
Preference number: 5 (lower is better)
Translates to: TWVGHRSKAVPNSTIETQLQLLL*SSPRLE
Trigger: TTCTAGCCTTGGTGAACTCAACAGTAACAATTGAAG...CTGAGTTTCTATAGTGCTGTTGGGGACTGCTTTGCTTCTGTGTCCTACCCAGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CAA 90 bp ACTGGTGTGCAGAACTCCCAGTTTGGCTACTTTTGTTATTTACTTCCTGAAATTGACGAAGAGGAAAGTTaGTGGCCTCCTGGAGCTTGC +
Preference number: 5 (lower is better)
Translates to: TGVQNSQFGYFCYLLPEIDEEES*WPPGAC
Trigger: GCAAGCTCCAGGAGGCCACAAACTTTCCTCTTCGTC...AATTTCAGGAAGTAAATAACAAAAGTAGCCAAACTGGGAGTTCTGCACACCAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CAA 90 bp TCTATGTTGCTGCAGGGAATCTTTGCAAGGGTTCAGATTTGTAAGGGTTACCTGGTTCTAGCATCTTGTTaGGTTCCCGATACAGGTGAG +
Preference number: 5 (lower is better)
Translates to: SMLLQGIFARVQICKGYLVLASC*VPDTGE
Trigger: CTCACCTGTATCGGGAACCAAACAAGATGCTAGAAC...CAGGTAACCCTTACAAATCTGAACCCTTGCAAAGATTCCCTGCAGCAACATAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS TCA 90 bp TTCAAAGGCTTTTTGCTCTGCCTCAGCTACAGCCTTCTGTACCTCTaGCATGGCCTGAATTTTCACCTTATTCACGGCTTCTTCTGTTTT +
Preference number: 5 (lower is better)
Translates to: FKGFLLCLSYSLLYL*HGLNFHLIHGFFCF
Trigger: AAAACAGAAGAAGCCGTGAATAAGGTGAAAATTCAGGCCATGTCAGAGGTACAGAAGGCTGTAGCTGAGGCAGAGCAAAAAGCCTTTGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045270.15
CDS CCA 90 bp TTCTTCTGTTTTCTTCCAAAACTCCACAGGCACATATCCTGTTGCTaGTCTACTGGTAAATTCCCGCTGAGAATCGTTGCTGAGAGAATC +
Preference number: 5 (lower is better)
Translates to: FFCFLPKLHRHISCC*STGKFPLRIVAERI
Trigger: GATTCTCTCAGCAACGATTCTCAGCGGGAATTTACCAGTAGACCAGCAACAGGATATGTGCCTGTGGAGTTTTGGAAGAAAACAGAAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045270.15
CDS-3UTR CAA 90 bp TCAGCTTCTGGGGAAAGTGATGGAACATTTTGGGTGGGATATCTCTGGCTTCCTCTTCAATTGTTACTGTaGAGTTCACCAAGGCTAGAA +
Preference number: 5 (lower is better)
Translates to: SASGESDGTFWVGYLWLPLQLLL*SSPRLE
Trigger: TTCTAGCCTTGGTGAACTCAACAGTAACAATTGAAG...AGGAAGCCAGAGATATCCCACCCAAAATGTTCCATCACTTTCCCCAGAAGCTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR CAA 90 bp GTAGCTGCCTTTAGATACATCAGGAGAAGGCATCAGATCTCATTACAGATGGTTAGGGGCAGGTTGGCCTaGAGAAATGGAATCACAAAT +
Preference number: 5 (lower is better)
Translates to: VAAFRYIRRRHQISLQMVRGRLA*RNGITN
Trigger: ATTTGTGATTCCATTTCTCAAGGCCAACCTGCCCCT...AACCATCTGTAATGAGATCTGATGCCTTCTCCTGATGTATCTAAAGGCAGCTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS-3UTR CAA 90 bp ATTCAGACTTGTTCTTCAGACTTGTTCATTGTACAAAAAGTGACCACAGCTTCCGATGCGATACTGGTGTaGAGCAGAAGGTGCTCATGC +
Preference number: 5 (lower is better)
Translates to: IQTCSSDLFIVQKVTTASDAILV*SRRCSC
Trigger: GCATGAGCACCTTCTGCTCAACACCAGTATCGCATC...GGAAGCTGTGGTCACTTTTTGTACAATGAACAAGTCTGAAGAACAAGTCTGAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CAA 90 bp TTCAGTTCCTTCTGGCTTTTCTCACATTTGGTTCAAACATGCCACCACCCAGTTGTCTACCAACTCATCTaGATAGCCTCCATTGAGACT +
Preference number: 5 (lower is better)
Translates to: FSSFWLFSHLVQTCHHPVVYQLI*IASIET
Trigger: AGTCTCAATGGAGGCTATCAAGATGAGTTGGTAGAC...AACTGGGTGGTGGCATGTTTGAACCAAATGTGAGAAAAGCCAGAAGGAACTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CAA 90 bp GATAAGTCTCCTGTAACTCAGGCTTGCTATGCAGCTATGGATAACCTTAAACTTAGGGGCAGGTTGGCCTaGAGAAATGGAATCACAAAT +
Preference number: 5 (lower is better)
Translates to: DKSPVTQACYAAMDNLKLRGRLA*RNGITN
Trigger: ATTTGTGATTCCATTTCTCAAGGCCAACCTGCCCCT...AAGTTTAAGGTTATCCATAGCTGCATAGCAAGCCTGAGTTACAGGAGACTTATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CAA 90 bp GATAAGTCTCCTGTAACTCAGGCTTGCTATGCAGCTATGGATAACCTTAAACTTGTTCTAGCATCTTGTTaGGTTCCCGATACAGGTGAG +
Preference number: 5 (lower is better)
Translates to: DKSPVTQACYAAMDNLKLVLASC*VPDTGE
Trigger: CTCACCTGTATCGGGAACCAAACAAGATGCTAGAAC...AAGTTTAAGGTTATCCATAGCTGCATAGCAAGCCTGAGTTACAGGAGACTTATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CAA 90 bp ATTCAGACTTGTTCTTCAGACTTGTTCATTGTACAAAAAGTGACCACAGCTTCCCGGTGTTCTAGCATCTaGTTTGGTTCCCGATACAGG +
Preference number: 5 (lower is better)
Translates to: IQTCSSDLFIVQKVTTASRCSSI*FGSRYR
Trigger: CCTGTATCGGGAACCAAACAAGATGCTAGAACACCG...GGAAGCTGTGGTCACTTTTTGTACAATGAACAAGTCTGAAGAACAAGTCTGAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CAA 90 bp ACACAAGCAAAATCAAGAAAAACACTGGAGTTAAGAGGTGGGTTCCAAACTAACTGGGAGGTGAGGATCTaGACTGTATCTTCACTTCCA +
Preference number: 5 (lower is better)
Translates to: TQAKSRKTLELRGGFQTNWEVRI*TVSSLP
Trigger: TGGAAGTGAAGATACAGTCAAGATCCTCACCTCCCA...GTTAGTTTGGAACCCACCTCTTAACTCCAGTGTTTTTCTTGATTTTGCTTGTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CAA 90 bp ATTCAGACTTGTTCTTCAGACTTGTTCATTGTACAAAAAGTGACCACAGCTTCCGTAGGAGGGGAATGGTaGATGCCATTGCTTAATGCT +
Preference number: 5 (lower is better)
Translates to: IQTCSSDLFIVQKVTTASVGGEW*MPLLNA
Trigger: AGCATTAAGCAATGGCATCAACCATTCCCCTCCTAC...GGAAGCTGTGGTCACTTTTTGTACAATGAACAAGTCTGAAGAACAAGTCTGAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CAA 90 bp ATTCAGACTTGTTCTTCAGACTTGTTCATTGTACAAAAAGTGACCACAGCTTCCTCAGGTGAGATATCATaGCCAAACTGCTGCAGAGTG +
Preference number: 5 (lower is better)
Translates to: IQTCSSDLFIVQKVTTASSGEIS*PNCCRV
Trigger: CACTCTGCAGCAGTTTGGCAATGATATCTCACCTGA...GGAAGCTGTGGTCACTTTTTGTACAATGAACAAGTCTGAAGAACAAGTCTGAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CAA 90 bp TTCAGTTCCTTCTGGCTTTTCTCACATTTGGTTCAAACATGCCACCACCCAGTTCTTCAATTGTTACTGTaGAGTTCACCAAGGCTAGAA +
Preference number: 5 (lower is better)
Translates to: FSSFWLFSHLVQTCHHPVLQLLL*SSPRLE
Trigger: TTCTAGCCTTGGTGAACTCAACAGTAACAATTGAAG...AACTGGGTGGTGGCATGTTTGAACCAAATGTGAGAAAAGCCAGAAGGAACTGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CAA 90 bp ACTGGTGTGCAGAACTCCCAGTTTGGCTACTTTTGTTATTTACTTCCTGAAATTGTTCTAGCATCTTGTTaGGTTCCCGATACAGGTGAG +
Preference number: 5 (lower is better)
Translates to: TGVQNSQFGYFCYLLPEIVLASC*VPDTGE
Trigger: CTCACCTGTATCGGGAACCAAACAAGATGCTAGAAC...AATTTCAGGAAGTAAATAACAAAAGTAGCCAAACTGGGAGTTCTGCACACCAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS-3UTR CAA 90 bp ACACAAGCAAAATCAAGAAAAACACTGGAGTTAAGAGGTGGGTTCCAAACTAACTTCGAGCTCTCTCCGTaGCAATCACTTCAAAGGCTT +
Preference number: 5 (lower is better)
Translates to: TQAKSRKTLELRGGFQTNFELSP*QSLQRL
Trigger: AAGCCTTTGAAGTGATTGCAACGGAGAGAGCTCGAA...GTTAGTTTGGAACCCACCTCTTAACTCCAGTGTTTTTCTTGATTTTGCTTGTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS-3UTR CAA 90 bp ATTCAGACTTGTTCTTCAGACTTGTTCATTGTACAAAAAGTGACCACAGCTTCCGTCTACCAACTCATCTaGATAGCCTCCATTGAGACC +
Preference number: 5 (lower is better)
Translates to: IQTCSSDLFIVQKVTTASVYQLI*IASIET
Trigger: GGTCTCAATGGAGGCTATCAAGATGAGTTGGTAGAC...GGAAGCTGTGGTCACTTTTTGTACAATGAACAAGTCTGAAGAACAAGTCTGAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000137526.2
CDS-3UTR CAA 90 bp GATAAGTCTCCTGTAACTCAGGCTTGCTATGCAGCTATGGATAACCTTAAACTTGAATGGTTGATGCCATaGCTTAATGCTGTAGGAGTA +
Preference number: 5 (lower is better)
Translates to: DKSPVTQACYAAMDNLKLEWLMP*LNAVGV
Trigger: TACTCCTACAGCATTAAGCAATGGCATCAACCATTC...AAGTTTAAGGTTATCCATAGCTGCATAGCAAGCCTGAGTTACAGGAGACTTATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
CDS CCA 72 bp CTGCTCTGGCTGTGGGGACTGTGGCCATGTAGACTCTaGCCACAGAGGCGGTGGTGCCGCTCCCAGTCCTTA +
Preference number: 6 (lower is better)
Translates to: LLWLWGLWPCRL*PQRRWCRSQSL
Trigger: TAAGGACTGGGAGCGGCACCACCGCCTCTGTGGCCAGAGTCTACATGGCCACAGTCCCCACAGCCAGAGCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS TCA 72 bp CTGAGCTGCCGAGCACCACAAGTAGCCGGCAGCTGTTaGTTCGTTAGTGCTGACGATGTGGAGGAGGCAGGC +
Preference number: 6 (lower is better)
Translates to: LSCRAPQVAGSC*FVSADDVEEAG
Trigger: GCCTGCCTCCTCCACATCGTCAGCACTAACGAATCAACAGCTGCCGGCTACTTGTGGTGCTCGGCAGCTCAG
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045270.15
ENSMUST00000099178.10
ENSMUST00000109724.2
ENSMUST00000109725.8
ENSMUST00000155202.2
CDS CCA 72 bp GGTGGCGATGGGGCACCATTCAGGGTAGGAGGGGAATaGTTGATGCCATTGCTTAGTTGGAAGGCGGCCGCT +
Preference number: 6 (lower is better)
Translates to: GGDGAPFRVGGE*LMPLLSWKAAA
Trigger: AGCGGCCGCCTTCCAACTAAGCAATGGCATCAACCATTCCCCTCCTACCCTGAATGGTGCCCCATCGCCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109724.2
CDS CAA 72 bp TTCGTTAGTGCTGACGATGTGGAGGAGGCAGGCCCATaGCTGAATCTCTGTGGTGGCGATGGGGCACCATTC +
Preference number: 6 (lower is better)
Translates to: FVSADDVEEAGP*LNLCGGDGAPF
Trigger: GAATGGTGCCCCATCGCCACCACAGAGATTCAGCAATGGGCCTGCCTCCTCCACATCGTCAGCACTAACGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045270.15
ENSMUST00000099178.10
ENSMUST00000109724.2
ENSMUST00000109725.8
ENSMUST00000155202.2
CDS CAA 72 bp TGCTTCCCTGAGCCTGTGAGCAGTGTCAGCAAACCGTaGCTGAGAGAATCTGTACTCCCAGGGCTGTGCTGC +
Preference number: 6 (lower is better)
Translates to: CFPEPVSSVSKP*LRESVLPGLCC
Trigger: GCAGCACAGCCCTGGGAGTACAGATTCTCTCAGCAACGGTTTGCTGACACTGCTCACAGGCTCAGGGAAGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS CAA 90 bp GTGAGGATCTTGACTGTATCTTCACTTCCACAGGCGATCCAGGCATaGCTGGCACCCTTTTCTCACAACCAAGTTGGAAGGCGGCCGCTC +
Preference number: 6 (lower is better)
Translates to: VRILTVSSLPQAIQA*LAPFSHNQVGRRPL
Trigger: GAGCGGCCGCCTTCCAACTTGGTTGTGAGAAAAGGGTGCCAGCAATGCCTGGATCGCCTGTGGAAGTGAAGATACAGTCAAGATCCTCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000099178.10
ENSMUST00000109725.8
CDS GCA 72 bp CCGTTGCTGAGAGAATCTGTACTCCCAGGGCTGTGCTaGCTAGAGACCAACTCAGTCCCAGTTTTCCTCAAC +
Preference number: 6 (lower is better)
Translates to: PLLRESVLPGLC*LETNSVPVFLN
Trigger: GTTGAGGAAAACTGGGACTGAGTTGGTCTCTAGGCAGCACAGCCCTGGGAGTACAGATTCTCTCAGCAACGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS CAA 72 bp CTGTGCCGAGGAGCAGGGCTGATAGTACACACTCTCTaGGCAGGCGGTTCAGGAGGAACTGTATCTCTTTCA +
Preference number: 6 (lower is better)
Translates to: LCRGAGLIVHTL*AGGSGGTVSLS
Trigger: TGAAAGAGATACAGTTCCTCCTGAACCGCCTGCCAAGAGAGTGTGTACTATCAGCCCTGCTCCTCGGCACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045270.15
ENSMUST00000099178.10
ENSMUST00000109724.2
ENSMUST00000109725.8
CDS TCA 72 bp TCCCTCCTTTCCGGACTGGGCCTCTTTCCATTTCCATaGACCTCCATGAGCAGTTCAGAAGAGTCAGCAGGA +
Preference number: 6 (lower is better)
Translates to: SLLSGLGLFPFP*TSMSSSEESAG
Trigger: TCCTGCTGACTCTTCTGAACTGCTCATGGAGGTTCATGGAAATGGAAAGAGGCCCAGTCCGGAAAGGAGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045270.15
ENSMUST00000099178.10
ENSMUST00000109724.2
ENSMUST00000109725.8
CDS GCA 72 bp TCGTTGCTGAGAGAATCTGTACTCCCAGGGCTGTGCTaGCTAGAGACCAACTCAGTCCCAGTTTTCCTCAAC +
Preference number: 6 (lower is better)
Translates to: SLLRESVLPGLC*LETNSVPVFLN
Trigger: GTTGAGGAAAACTGGGACTGAGTTGGTCTCTAGGCAGCACAGCCCTGGGAGTACAGATTCTCTCAGCAACGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS GCA 72 bp GAATCGTTGCTGAGAGAATCTGTACTCCCAGGGCTGTaGTGCCTAGAGACCAACTCAGTCCCAGTTTTCCTC +
Preference number: 6 (lower is better)
Translates to: ESLLRESVLPGL*CLETNSVPVFL
Trigger: GAGGAAAACTGGGACTGAGTTGGTCTCTAGGCAGCACAGCCCTGGGAGTACAGATTCTCTCAGCAACGATTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS GCA 72 bp TCTTCTGCAGCCTGCCGTTTGACATCCGCTATGGTCTaGTCCATTCGAGCTCTCTCCGTTGCAATCACTTCA +
Preference number: 6 (lower is better)
Translates to: SSAACRLTSAMV*SIRALSVAITS
Trigger: TGAAGTGATTGCAACGGAGAGAGCTCGAATGGAGCAGACCATAGCGGATGTCAAACGGCAGGCTGCAGAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS GCA 72 bp CGGCCACAGTTCCAGCAGTTCTCTGTGGACTCTTCTTaGTCATTGATGACCAGGAAAGCATCTTCTGCAGCC +
Preference number: 6 (lower is better)
Translates to: RPQFQQFSVDSS*SLMTRKASSAA
Trigger: GGCTGCAGAAGATGCTTTCCTGGTCATCAATGAGCAAGAAGAGTCCACAGAGAACTGCTGGAACTGTGGCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS GCA 72 bp AAACCGTTGCTGAGAGAATCTGTACTCCCAGGGCTGTaGTGCCTAGAGACCAACTCAGTCCCAGTTTTCCTC +
Preference number: 6 (lower is better)
Translates to: KPLLRESVLPGL*CLETNSVPVFL
Trigger: GAGGAAAACTGGGACTGAGTTGGTCTCTAGGCAGCACAGCCCTGGGAGTACAGATTCTCTCAGCAACGGTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS CCA 72 bp GGTGGCGATGGGGCACCATTCAGGGTAGGAGGGGAATaGTTGATGCCATTGCTTAATGCTGTAGGAGTAAAG +
Preference number: 6 (lower is better)
Translates to: GGDGAPFRVGGE*LMPLLNAVGVK
Trigger: CTTTACTCCTACAGCATTAAGCAATGGCATCAACCATTCCCCTCCTACCCTGAATGGTGCCCCATCGCCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000045270.15
ENSMUST00000099178.10
ENSMUST00000109725.8
ENSMUST00000155202.2
CDS CAA 72 bp TTGATGACCAGGAAAGCATCTTCTGCAGCCTGCCGTTaGACATCCGCTATGGTCTGCTCCATTCGAGCTCTC +
Preference number: 6 (lower is better)
Translates to: LMTRKASSAACR*TSAMVCSIRAL
Trigger: GAGAGCTCGAATGGAGCAGACCATAGCGGATGTCAAACGGCAGGCTGCAGAAGATGCTTTCCTGGTCATCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS CAA 90 bp AGGGCGGGACTGTGCCGAGGAGCAGGGCTGATAGTACACACTCTCTaGGCAGGCGGTTCAGGAGGAACTGTATCTCTTTCAAAATTATTC +
Preference number: 6 (lower is better)
Translates to: RAGLCRGAGLIVHTL*AGGSGGTVSLSKLF
Trigger: GAATAATTTTGAAAGAGATACAGTTCCTCCTGAACCGCCTGCCAAGAGAGTGTGTACTATCAGCCCTGCTCCTCGGCACAGTCCCGCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045270.15
ENSMUST00000099178.10
ENSMUST00000109724.2
ENSMUST00000109725.8
CDS CAA 90 bp TCTTGCTCATTGATGACCAGGAAAGCATCTTCTGCAGCCTGCCGTTaGACATCCGCTATGGTCTGCTCCATTCGAGCTCTCTCCGTTGCA +
Preference number: 6 (lower is better)
Translates to: SCSLMTRKASSAACR*TSAMVCSIRALSVA
Trigger: TGCAACGGAGAGAGCTCGAATGGAGCAGACCATAGCGGATGTCAAACGGCAGGCTGCAGAAGATGCTTTCCTGGTCATCAATGAGCAAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS CAA 90 bp GTGAGGATCTTGACTGTATCTTCACTTCCACAGGCGATCCAGGCATaGCTGGCACCCTTTTCTCACAACCAAATTCAACAGGGCCCTCCG +
Preference number: 6 (lower is better)
Translates to: VRILTVSSLPQAIQA*LAPFSHNQIQQGPP
Trigger: CGGAGGGCCCTGTTGAATTTGGTTGTGAGAAAAGGGTGCCAGCAATGCCTGGATCGCCTGTGGAAGTGAAGATACAGTCAAGATCCTCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155202.2
CDS GCA 72 bp CGAGCTCTCTCCGTTGCAATCACTTCAAAGGCTTTTTaGTCTGCCTCAGCTACAGCCTTCTGTACCTCTGAC +
Preference number: 6 (lower is better)
Translates to: RALSVAITSKAF*SASATAFCTSD
Trigger: GTCAGAGGTACAGAAGGCTGTAGCTGAGGCAGAGCAAAAAGCCTTTGAAGTGATTGCAACGGAGAGAGCTCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS GCA 72 bp ATCCGCTATGGTCTGCTCCATTCGAGCTCTCTCCGTTaGAATCACTTCAAAGGCTTTTTGCTCTGCCTCAGC +
Preference number: 6 (lower is better)
Translates to: IRYGLLHSSSLR*NHFKGFLLCLS
Trigger: GCTGAGGCAGAGCAAAAAGCCTTTGAAGTGATTGCAACGGAGAGAGCTCGAATGGAGCAGACCATAGCGGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS GCA 72 bp TGCTCATTGATGACCAGGAAAGCATCTTCTGCAGCCTaGCGTTTGACATCCGCTATGGTCTGCTCCATTCGA +
Preference number: 6 (lower is better)
Translates to: CSLMTRKASSAA*RLTSAMVCSIR
Trigger: TCGAATGGAGCAGACCATAGCGGATGTCAAACGGCAGGCTGCAGAAGATGCTTTCCTGGTCATCAATGAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS CCA 72 bp CTGTATCTTCACTTCCACAGGCGATCCAGGCATTGCTaGCACCCTTTTCTCACAACCAAATTCAACAGGGCC +
Preference number: 6 (lower is better)
Translates to: LYLHFHRRSRHC*HPFLTTKFNRA
Trigger: GGCCCTGTTGAATTTGGTTGTGAGAAAAGGGTGCCAGCAATGCCTGGATCGCCTGTGGAAGTGAAGATACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155202.2
CDS CAA 72 bp CATCCGCTATGGTCTGCTCCATTCGAGCTCTCTCCGTaGCAATCACTTCAAAGGCTTTTTGCTCTGCCTCAG +
Preference number: 6 (lower is better)
Translates to: HPLWSAPFELSP*QSLQRLFALPQ
Trigger: CTGAGGCAGAGCAAAAAGCCTTTGAAGTGATTGCAACGGAGAGAGCTCGAATGGAGCAGACCATAGCGGATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS GCA 72 bp TTCTTCACGGTCAGATTCCTGACAGCGCCTCAGAACTaGCATGGAGCGCCTAGTTTTCTCTACCATTTCCAT +
Preference number: 6 (lower is better)
Translates to: FFTVRFLTAPQN*HGAPSFLYHFH
Trigger: ATGGAAATGGTAGAGAAAACTAGGCGCTCCATGGCAGTTCTGAGGCGCTGTCAGGAATCTGACCGTGAAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045270.15
ENSMUST00000099178.10
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS CAA 72 bp TTGACTGTATCTTCACTTCCACAGGCGATCCAGGCATaGCTGGCACCCTTTTCTCACAACCAAGTTGGAAGG +
Preference number: 6 (lower is better)
Translates to: LTVSSLPQAIQA*LAPFSHNQVGR
Trigger: CCTTCCAACTTGGTTGTGAGAAAAGGGTGCCAGCAATGCCTGGATCGCCTGTGGAAGTGAAGATACAGTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000099178.10
ENSMUST00000109725.8
CDS CAA 90 bp ATCAGCCCACTCCCTTTCTGTCAAACGGTGGTCTACCAACTCATCTaGATAGCCTCCATTGAGACTAAGATTGTGGTGCCTCTCACGAAC +
Preference number: 6 (lower is better)
Translates to: ISPLPFCQTVVYQLI*IASIETKIVVPLTN
Trigger: GTTCGTGAGAGGCACCACAATCTTAGTCTCAATGGAGGCTATCAAGATGAGTTGGTAGACCACCGTTTGACAGAAAGGGAGTGGGCTGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000099178.10
ENSMUST00000109725.8
CDS CAA 72 bp GCCTCTCACGAACTTCTCGGTGTTCTAGCATCTTGTTaGGTTCCCGATACAGGTGAGAAGTTGCAATGTCTT +
Preference number: 6 (lower is better)
Translates to: ASHELLGVLASC*VPDTGEKLQCL
Trigger: AAGACATTGCAACTTCTCACCTGTATCGGGAACCAAACAAGATGCTAGAACACCGAGAAGTTCGTGAGAGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000099178.10
ENSMUST00000109725.8
CDS CAA 72 bp CTCCCTTTCTGTCAAACGGTGGTCTACCAACTCATCTaGATAGCCTCCATTGAGACTAAGATTGTGGTGCCT +
Preference number: 6 (lower is better)
Translates to: LPFCQTVVYQLI*IASIETKIVVP
Trigger: AGGCACCACAATCTTAGTCTCAATGGAGGCTATCAAGATGAGTTGGTAGACCACCGTTTGACAGAAAGGGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000099178.10
ENSMUST00000109725.8
CDS CAA 72 bp TTGACTGTATCTTCACTTCCACAGGCGATCCAGGCATaGCTGGCACCCTTTTCTCACAACCAAATTCAACAG +
Preference number: 6 (lower is better)
Translates to: LTVSSLPQAIQA*LAPFSHNQIQQ
Trigger: CTGTTGAATTTGGTTGTGAGAAAAGGGTGCCAGCAATGCCTGGATCGCCTGTGGAAGTGAAGATACAGTCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155202.2
CDS CAA 90 bp GATTGTGGTGCCTCTCACGAACTTCTCGGTGTTCTAGCATCTTGTTaGGTTCCCGATACAGGTGAGAAGTTGCAATGTCTTCTAGTGTAT +
Preference number: 6 (lower is better)
Translates to: DCGASHELLGVLASC*VPDTGEKLQCLLVY
Trigger: ATACACTAGAAGACATTGCAACTTCTCACCTGTATCGGGAACCAAACAAGATGCTAGAACACCGAGAAGTTCGTGAGAGGCACCACAATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000099178.10
ENSMUST00000109725.8
CDS TCA 72 bp ATGTGTATCCTTTTTAAACACATAAGCTTGCTTCCCTaGGCCTGTGAGCAGTGTCAGCAAACCGTTGCTGAG +
Preference number: 6 (lower is better)
Translates to: MCILFKHISLLP*ACEQCQQTVAE
Trigger: CTCAGCAACGGTTTGCTGACACTGCTCACAGGCTCAGGGAAGCAAGCTTATGTGTTTAAAAAGGATACACAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS CCA 72 bp TTTCTTCCAAAACTCCACAGGCACATATCCTGTTGCTaGTCTACTGGTAAATTCCCGCTGAGAATCGTTGCT +
Preference number: 6 (lower is better)
Translates to: FLPKLHRHISCC*STGKFPLRIVA
Trigger: AGCAACGATTCTCAGCGGGAATTTACCAGTAGACCAGCAACAGGATATGTGCCTGTGGAGTTTTGGAAGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS CAA 72 bp CCTGGAGCTTGCAATGGAATTCTTCAATTGTTACTGTaGAGTTCACCAAGGCTAGAACGAGAGTCCGAACCT +
Preference number: 6 (lower is better)
Translates to: PGACNGILQLLL*SSPRLERESEP
Trigger: AGGTTCGGACTCTCGTTCTAGCCTTGGTGAACTCAACAGTAACAATTGAAGAATTCCATTGCAAGCTCCAGG
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045270.15
ENSMUST00000099178.10
ENSMUST00000109724.2
ENSMUST00000109725.8
CDS CAA 72 bp CTCCCTTTCTGTCAAACGGTGGTCTACCAACTCATCTaGATAGCCTCCATTGAGACCTTGAGAAATGGAATC +
Preference number: 6 (lower is better)
Translates to: LPFCQTVVYQLI*IASIETLRNGI
Trigger: GATTCCATTTCTCAAGGTCTCAATGGAGGCTATCAAGATGAGTTGGTAGACCACCGTTTGACAGAAAGGGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137526.2
CDS GCA 72 bp TGTTTTCTTCCAAAACTCCACAGGCACATATCCTGTTaGTGGTCTACTGGTAAATTCCCGCTGAGAATCGTT +
Preference number: 6 (lower is better)
Translates to: CFLPKLHRHISC*WSTGKFPLRIV
Trigger: AACGATTCTCAGCGGGAATTTACCAGTAGACCAGCAACAGGATATGTGCCTGTGGAGTTTTGGAAGAAAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000109725.8
ENSMUST00000137526.2
CDS CCA 72 bp CAAGGACACAGCCATAAGATGGAGGATCCAGAAAGCTaGTTAGCAGAAATGTACAATTCTTCAGTGTGGCAA +
Preference number: 6 (lower is better)
Translates to: QGHSHKMEDPES*LAEMYNSSVWQ
Trigger: TTGCCACACTGAAGAATTGTACATTTCTGCTAACCAGCTTTCTGGATCCTCCATCTTATGGCTGTGTCCTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099178.10
CDS CAA 72 bp CTAGCATCTTGTTTGGTTCCCGATACAGGTGAGAAGTaGCAATGTCTTCTAGTGTATAGTGCTGAAGAGGTG +
Preference number: 6 (lower is better)
Translates to: LASCLVPDTGEK*QCLLVYSAEEV
Trigger: CACCTCTTCAGCACTATACACTAGAAGACATTGCAACTTCTCACCTGTATCGGGAACCAAACAAGATGCTAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045270.15
ENSMUST00000099178.10
ENSMUST00000109725.8