Pregenerated sensors for CAVIN4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028348Ensembl transcript IDs: ENSMUST00000030033.5
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CCAGAGCCGTGCAACTATTTTCTCATTGGCCAAGAGCTGCCACGAAAAGGCATGAGCTTTTCTACCATCTaGCTTTCCACTGCGGATGAA | + |
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Preference number: 2 (lower is better) Translates to: PEPCNYFLIGQELPRKGMSFSTI*LSTADE Trigger: TTCATCCGCAGTGGAAAGGCAGATGGTAGAAAAGCT...CATGCCTTTTCGTGGCAGCTCTTGGCCAATGAGAAAATAGTTGCACGGCTCTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| 3UTR-3UTR CCA 90 bp | GACTTCCATTTCCTTTCCCTCACACAAGAACTTTGTAACCTTCATAAGGCTACTGTAGGCAGACAGGGGTaGGGTGCTGTCAGAGTCATA | + |
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Preference number: 2 (lower is better) Translates to: DFHFLSLTQELCNLHKATVGRQG*GAVRVI Trigger: TATGACTCTGACAGCACCCCACCCCTGTCTGCCTAC...AGTAGCCTTATGAAGGTTACAAAGTTCTTGTGTGAGGGAAAGGAAATGGAAGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| 3UTR CAA 90 bp | GTGAACATCTGGATAACACGATGTACTCATCAGCTACTCCCCTTCTaGACTGGATGTGTCAATCCTGACCCAGATCTAGAGTTTGCTGAT | + |
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Preference number: 2 (lower is better) Translates to: VNIWITRCTHQLLPF*TGCVNPDPDLEFAD Trigger: ATCAGCAAACTCTAGATCTGGGTCAGGATTGACACATCCAGTCAAGAAGGGGAGTAGCTGATGAGTACATCGTGTTATCCAGATGTTCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| 3UTR-3UTR CCA 90 bp | ACACAAGAACTTTGTAACCTTCATAAGGCTACTGACTCACTAATGAATCTCCAGCAACTATTTTCTCATTaGCCAAGAGCTGCCACGAAA | + |
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Preference number: 2 (lower is better) Translates to: TQELCNLHKATDSLMNLQQLFSH*PRAATK Trigger: TTTCGTGGCAGCTCTTGGCCAATGAGAAAATAGTTG...CTGGAGATTCATTAGTGAGTCAGTAGCCTTATGAAGGTTACAAAGTTCTTGTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| 3UTR GCA 72 bp | ACCCCAGTTTCCGCTCAGCTCTGGCCTTGGAGCCTGTaGCGAGGGCTTCCTCACAGATGTAACTGTTTCCAT | + |
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Preference number: 3 (lower is better) Translates to: TPVSAQLWPWSL*RGLPHRCNCFH Trigger: ATGGAAACAGTTACATCTGTGAGGAAGCCCTCGGCACAGGCTCCAAGGCCAGAGCTGAGCGGAAACTGGGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| 3UTR-3UTR CAA 90 bp | GTTGCCGCAGCTAAAATGTTCAAGTCCCAGACTTCCATTTCCTTTCCCTCACACGCAACTATTTTCTCATaGGCCAAGAGCTGCCACGAA | + |
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Preference number: 3 (lower is better) Translates to: VAAAKMFKSQTSISFPSHATIFS*AKSCHE Trigger: TTCGTGGCAGCTCTTGGCCAATGAGAAAATAGTTGC...GTGTGAGGGAAAGGAAATGGAAGTCTGGGACTTGAACATTTTAGCTGCGGCAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| 3UTR-3UTR CAA 90 bp | TTCCTTTCCCTCACACAAGAACTTTGTAACCTTCATAAGGCTACTGACTCACTACAGCTACTCCCCTTCTaGACTGGATGTGTCAATCCT | + |
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Preference number: 3 (lower is better) Translates to: FLSLTQELCNLHKATDSLQLLPF*TGCVNP Trigger: AGGATTGACACATCCAGTCAAGAAGGGGAGTAGCTG...TAGTGAGTCAGTAGCCTTATGAAGGTTACAAAGTTCTTGTGTGAGGGAAAGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| 3UTR TCA 72 bp | CGTTGTTCCTGTGTTATGAATGGCATATCATCTAACTaGCCAGAGCCGTGCAACTATTTTCTCATTGGCCAA | + |
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Preference number: 3 (lower is better) Translates to: RCSCVMNGISSN*PEPCNYFLIGQ Trigger: TTGGCCAATGAGAAAATAGTTGCACGGCTCTGGTCAGTTAGATGATATGCCATTCATAACACAGGAACAACG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| 3UTR-3UTR CAA 90 bp | ACACAAGAACTTTGTAACCTTCATAAGGCTACTGACTCACTAATGAATCTCCAGACGGACACAGATCCGTaGTTCCTGTGTTATGAATGG | + |
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Preference number: 3 (lower is better) Translates to: TQELCNLHKATDSLMNLQTDTDP*FLCYEW Trigger: CCATTCATAACACAGGAACAACGGATCTGTGTCCGT...CTGGAGATTCATTAGTGAGTCAGTAGCCTTATGAAGGTTACAAAGTTCTTGTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS-3UTR CCA 90 bp | GAACCACCCCAGTTTCCGCTCAGCTCTGGCCTTGGAGCCTGTGCCGAGGGCTTCTCAGAGTGGAACTCATaGATGGGCCCCAGAGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: EPPQFPLSSGLGACAEGFSEWNS*MGPRAR Trigger: CCTGGCTCTGGGGCCCATCCATGAGTTCCACTCTGA...GAAGCCCTCGGCACAGGCTCCAAGGCCAGAGCTGAGCGGAAACTGGGGTGGTTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS-3UTR CCA 90 bp | GTGAACCACCCCAGTTTCCGCTCAGCTCTGGCCTTGGAGCCTGTGCCGAGGGCTGGGTCCCCTCCTTCTTaGGGACTGTACCCTCCTTTG | + |
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Preference number: 4 (lower is better) Translates to: VNHPSFRSALALEPVPRAGSPPS*GLYPPL Trigger: CAAAGGAGGGTACAGTCCCCAAGAAGGAGGGGACCC...AGCCCTCGGCACAGGCTCCAAGGCCAGAGCTGAGCGGAAACTGGGGTGGTTCAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS-3UTR GCA 90 bp | GAACCACCCCAGTTTCCGCTCAGCTCTGGCCTTGGAGCCTGTGCCGAGGGCTTCCACAATGGTGAGGGCTaGGTCTTGGTCTTCATCTTC | + |
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Preference number: 4 (lower is better) Translates to: EPPQFPLSSGLGACAEGFHNGEG*VLVFIF Trigger: GAAGATGAAGACCAAGACGCAGCCCTCACCATTGTG...GAAGCCCTCGGCACAGGCTCCAAGGCCAGAGCTGAGCGGAAACTGGGGTGGTTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS-3UTR CCA 90 bp | ACCAGAGCCGTGCAACTATTTTCTCATTGGCCAAGAGCTGCCACGAAAAGGCATTCTTCGGCCTCCTCCTaGTTCTCGGGCAGGCTTCTG | + |
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Preference number: 4 (lower is better) Translates to: TRAVQLFSHWPRAATKRHSSASS*FSGRLL Trigger: CAGAAGCCTGCCCGAGAACCAGGAGGAGGCCGAAGA...ATGCCTTTTCGTGGCAGCTCTTGGCCAATGAGAAAATAGTTGCACGGCTCTGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS-3UTR CCA 90 bp | ACTTGTGAACCACCCCAGTTTCCGCTCAGCTCTGGCCTTGGAGCCTGTGCCGAGGACTGTACCCTCCTTTaGTCACCTCCTTTTCTGTTT | + |
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Preference number: 4 (lower is better) Translates to: TCEPPQFPLSSGLGACAEDCTLL*SPPFLF Trigger: AAACAGAAAAGGAGGTGACCAAAGGAGGGTACAGTC...CTCGGCACAGGCTCCAAGGCCAGAGCTGAGCGGAAACTGGGGTGGTTCACAAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS-3UTR CCA 90 bp | ACCAGAGCCGTGCAACTATTTTCTCATTGGCCAAGAGCTGCCACGAAAAGGCATCAAAGGCTCAGGCGTTaGGGGGTCCCCTCCTTCTTG | + |
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Preference number: 4 (lower is better) Translates to: TRAVQLFSHWPRAATKRHQRLRR*GVPSFL Trigger: CAAGAAGGAGGGGACCCCCCAACGCCTGAGCCTTTG...ATGCCTTTTCGTGGCAGCTCTTGGCCAATGAGAAAATAGTTGCACGGCTCTGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS-3UTR CCA 90 bp | TTCCTTTCCCTCACACAAGAACTTTGTAACCTTCATAAGGCTACTGACTCACTACCTCTGTCTACCTCCTaGCCCTCGGCCTTGGGATCC | + |
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Preference number: 4 (lower is better) Translates to: FLSLTQELCNLHKATDSLPLSTS*PSALGS Trigger: GGATCCCAAGGCCGAGGGCCAGGAGGTAGACAGAGG...TAGTGAGTCAGTAGCCTTATGAAGGTTACAAAGTTCTTGTGTGAGGGAAAGGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS-3UTR TCA 90 bp | GTTGCCGCAGCTAAAATGTTCAAGTCCCAGACTTCCATTTCCTTTCCCTCACACAATGTGCTCTTTGCCTaGCTTCCTAAGCCTGGCAGA | + |
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Preference number: 4 (lower is better) Translates to: VAAAKMFKSQTSISFPSHNVLFA*LPKPGR Trigger: TCTGCCAGGCTTAGGAAGTCAGGCAAAGAGCACATT...GTGTGAGGGAAAGGAAATGGAAGTCTGGGACTTGAACATTTTAGCTGCGGCAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS-3UTR CCA 90 bp | CAAGTCCCAGACTTCCATTTCCTTTCCCTCACACAAGAACTTTGTAACCTTCATAGTGGAACTCATGGATaGGCCCCAGAGCCAGGCTAC | + |
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Preference number: 4 (lower is better) Translates to: QVPDFHFLSLTQELCNLHSGTHG*APEPGY Trigger: GTAGCCTGGCTCTGGGGCCCATCCATGAGTTCCACT...ATGAAGGTTACAAAGTTCTTGTGTGAGGGAAAGGAAATGGAAGTCTGGGACTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS-3UTR TCA 90 bp | ATTTTAGAGGTAAGAAATGAAGCTTTTCTACCATCTGCCTTTCCACTGCGGATGGCACGGTCACAATGGTaGGGGCTGCGTCTTGGTCTT | + |
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Preference number: 4 (lower is better) Translates to: ILEVRNEAFLPSAFPLRMARSQW*GLRLGL Trigger: AAGACCAAGACGCAGCCCTCACCATTGTGACCGTGC...CATCCGCAGTGGAAAGGCAGATGGTAGAAAAGCTTCATTTCTTACCTCTAAAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS-3UTR GCA 90 bp | ACTTCCATTTCCTTTCCCTCACACAAGAACTTTGTAACCTTCATAAGGCTACTGAACAACAGACAGGGATaGGGGGCAGGGAATGTCCTC | + |
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Preference number: 4 (lower is better) Translates to: TSISFPSHKNFVTFIRLLNNRQG*GAGNVL Trigger: GAGGACATTCCCTGCCCCGCATCCCTGTCTGTTGTT...CAGTAGCCTTATGAAGGTTACAAAGTTCTTGTGTGAGGGAAAGGAAATGGAAGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS-3UTR CCA 90 bp | CCAGAGCCGTGCAACTATTTTCTCATTGGCCAAGAGCTGCCACGAAAAGGCATGCTTGACAACCGATTCTaGTGGATTTTACCAGCATTT | + |
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Preference number: 4 (lower is better) Translates to: PEPCNYFLIGQELPRKGMLDNRF*WILPAF Trigger: AAATGCTGGTAAAATCCACCAGAATCGGTTGTCAAG...CATGCCTTTTCGTGGCAGCTCTTGGCCAATGAGAAAATAGTTGCACGGCTCTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS-3UTR CCA 90 bp | TTCCTTTCCCTCACACAAGAACTTTGTAACCTTCATAAGGCTACTGACTCACTAGTGAGGGCTGCGTCTTaGTCTTCATCTTCCGTCACA | + |
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Preference number: 4 (lower is better) Translates to: FLSLTQELCNLHKATDSLVRAAS*SSSSVT Trigger: TGTGACGGAAGATGAAGACCAAGACGCAGCCCTCAC...TAGTGAGTCAGTAGCCTTATGAAGGTTACAAAGTTCTTGTGTGAGGGAAAGGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS-3UTR CCA 90 bp | TTCCTTTCCCTCACACAAGAACTTTGTAACCTTCATAAGGCTACTGACTCACTACTGAACTCATCAGAGTaGAACTCATGGATGGGCCCC | + |
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Preference number: 4 (lower is better) Translates to: FLSLTQELCNLHKATDSLLNSSE*NSWMGP Trigger: GGGGCCCATCCATGAGTTCCACTCTGATGAGTTCAG...TAGTGAGTCAGTAGCCTTATGAAGGTTACAAAGTTCTTGTGTGAGGGAAAGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS-3UTR TCA 90 bp | CAAGTCCCAGACTTCCATTTCCTTTCCCTCACACAAGAACTTTGTAACCTTCATCTTAAAAGCTTCCTTTaGGGGAGCGGCACTGGAAAT | + |
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Preference number: 4 (lower is better) Translates to: QVPDFHFLSLTQELCNLHLKSFL*GSGTGN Trigger: ATTTCCAGTGCCGCTCCCTCAAAGGAAGCTTTTAAG...ATGAAGGTTACAAAGTTCTTGTGTGAGGGAAAGGAAATGGAAGTCTGGGACTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS-3UTR CCA 90 bp | TTCCTTTCCCTCACACAAGAACTTTGTAACCTTCATAAGGCTACTGACTCACTATCCTCTACCCTCACCTaGGGTTTAAAAGTCACCTTC | + |
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Preference number: 4 (lower is better) Translates to: FLSLTQELCNLHKATDSLSSTLT*GLKVTF Trigger: GAAGGTGACTTTTAAACCCCAGGTGAGGGTAGAGGA...TAGTGAGTCAGTAGCCTTATGAAGGTTACAAAGTTCTTGTGTGAGGGAAAGGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS-3UTR TCA 90 bp | ATTTTAGAGGTAAGAAATGAAGCTTTTCTACCATCTGCCTTTCCACTGCGGATGCCTTTTCTGTTTCACTaGACTCATCAGAGTGGAACT | + |
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Preference number: 4 (lower is better) Translates to: ILEVRNEAFLPSAFPLRMPFLFH*THQSGT Trigger: AGTTCCACTCTGATGAGTTCAGTGAAACAGAAAAGG...CATCCGCAGTGGAAAGGCAGATGGTAGAAAAGCTTCATTTCTTACCTCTAAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS-3UTR CCA 90 bp | CAAGTCCCAGACTTCCATTTCCTTTCCCTCACACAAGAACTTTGTAACCTTCATGACAACCGATTCTGGTaGATTTTACCAGCATTTGAA | + |
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Preference number: 4 (lower is better) Translates to: QVPDFHFLSLTQELCNLHDNRFW*ILPAFE Trigger: TTCAAATGCTGGTAAAATCCACCAGAATCGGTTGTC...ATGAAGGTTACAAAGTTCTTGTGTGAGGGAAAGGAAATGGAAGTCTGGGACTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS-3UTR CCA 90 bp | GACTTCCATTTCCTTTCCCTCACACAAGAACTTTGTAACCTTCATAAGGCTACTTTATTTCTTCTTGCTTaGTTTCGACTTTGGTTACAC | + |
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Preference number: 4 (lower is better) Translates to: DFHFLSLTQELCNLHKATLFLLA*FRLWLH Trigger: GTGTAACCAAAGTCGAAACCAAGCAAGAAGAAATAA...AGTAGCCTTATGAAGGTTACAAAGTTCTTGTGTGAGGGAAAGGAAATGGAAGTC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS TCA 90 bp | CAGAGTGGAACTCATGGATGGGCCCCAGAGCCAGGCTACCTGAGATaGTGTCCACGCCCATCCCTCTGTCTACCTCCTGGCCCTCGGCCT | + |
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Preference number: 5 (lower is better) Translates to: QSGTHGWAPEPGYLR*CPRPSLCLPPGPRP Trigger: AGGCCGAGGGCCAGGAGGTAGACAGAGGGATGGGCGTGGACATCATCTCAGGTAGCCTGGCTCTGGGGCCCATCCATGAGTTCCACTCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS CCA 90 bp | AGGCTACCTGAGATGATGTCCACGCCCATCCCTCTGTCTACCTCCTaGCCCTCGGCCTTGGGATCCTTCGCTTTCCTAAGGCTCCGAATC | + |
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Preference number: 5 (lower is better) Translates to: RLPEMMSTPIPLSTS*PSALGSFAFLRLRI Trigger: GATTCGGAGCCTTAGGAAAGCGAAGGATCCCAAGGCCGAGGGCCAGGAGGTAGACAGAGGGATGGGCGTGGACATCATCTCAGGTAGCCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS TCA 90 bp | CACTGTCCACGACACTGGCCACTCTGTCCAGCACGGTCACAATGGTaGGGGCTGCGTCTTGGTCTTCATCTTCCGTCACACTTGACAACC | + |
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Preference number: 5 (lower is better) Translates to: HCPRHWPLCPARSQW*GLRLGLHLPSHLTT Trigger: GGTTGTCAAGTGTGACGGAAGATGAAGACCAAGACGCAGCCCTCACCATTGTGACCGTGCTGGACAGAGTGGCCAGTGTCGTGGACAGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS GCA 90 bp | GATTTCTTAAATCTTTCCCCCGACTGCCTCAGCCTCTCTCCTGACTaGCTCAGCCTCTCTCCCGACTGCCTCAGCCTCTCTCTCCTCTCA | + |
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Preference number: 5 (lower is better) Translates to: DFLNLSPDCLSLSPD*LSLSPDCLSLSLLS Trigger: TGAGAGGAGAGAGAGGCTGAGGCAGTCGGGAGAGAGGCTGAGGCAGTCAGGAGAGAGGCTGAGGCAGTCGGGGGAAAGATTTAAGAAATC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS TCA 90 bp | AATCGATTTCTTAAATCTTTCCCCCGACTGCCTCAGCCTCTCTCCTaGCTGCCTCAGCCTCTCTCCCGACTGCCTCAGCCTCTCTCTCCT | + |
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Preference number: 5 (lower is better) Translates to: NRFLKSFPRLPQPLS*LPQPLSRLPQPLSP Trigger: AGGAGAGAGAGGCTGAGGCAGTCGGGAGAGAGGCTGAGGCAGTCAGGAGAGAGGCTGAGGCAGTCGGGGGAAAGATTTAAGAAATCGATT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS CCA 90 bp | GAGGAGAGCTCTATTGGGGGATCGAAGACTTCTTCGGCCTCCTCCTaGTTCTCGGGCAGGCTTCTGTCTTTAACAACAGACAGGGATGCG | + |
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Preference number: 5 (lower is better) Translates to: EESSIGGSKTSSASS*FSGRLLSLTTDRDA Trigger: CGCATCCCTGTCTGTTGTTAAAGACAGAAGCCTGCCCGAGAACCAGGAGGAGGCCGAAGAAGTCTTCGATCCCCCAATAGAGCTCTCCTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS CCA 90 bp | CTGGCCACTCTGTCCAGCACGGTCACAATGGTGAGGGCTGCGTCTTaGTCTTCATCTTCCGTCACACTTGACAACCGATTCTGGTGGATT | + |
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Preference number: 5 (lower is better) Translates to: LATLSSTVTMVRAAS*SSSSVTLDNRFWWI Trigger: AATCCACCAGAATCGGTTGTCAAGTGTGACGGAAGATGAAGACCAAGACGCAGCCCTCACCATTGTGACCGTGCTGGACAGAGTGGCCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS CCA 90 bp | GTCACCTCCTTTTCTGTTTCACTGAACTCATCAGAGTGGAACTCATaGATGGGCCCCAGAGCCAGGCTACCTGAGATGATGTCCACGCCC | + |
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Preference number: 5 (lower is better) Translates to: VTSFSVSLNSSEWNS*MGPRARLPEMMSTP Trigger: GGGCGTGGACATCATCTCAGGTAGCCTGGCTCTGGGGCCCATCCATGAGTTCCACTCTGATGAGTTCAGTGAAACAGAAAAGGAGGTGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS GCA 90 bp | CTCCTGGTTCTCGGGCAGGCTTCTGTCTTTAACAACAGACAGGGATaGGGGGCAGGGAATGTCCTCCTGGAAGATTACCACTCGGAATTT | + |
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Preference number: 5 (lower is better) Translates to: LLVLGQASVFNNRQG*GAGNVLLEDYHSEF Trigger: AAATTCCGAGTGGTAATCTTCCAGGAGGACATTCCCTGCCCCGCATCCCTGTCTGTTGTTAAAGACAGAAGCCTGCCCGAGAACCAGGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS-3UTR CAA 90 bp | ACCAGAGCCGTGCAACTATTTTCTCATTGGCCAAGAGCTGCCACGAAAAGGCATCAATTCTCTTCTGGCTaGCCTGCACACTGTCCACGA | + |
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Preference number: 5 (lower is better) Translates to: TRAVQLFSHWPRAATKRHQFSSG*PAHCPR Trigger: TCGTGGACAGTGTGCAGGCAAGCCAGAAGAGAATTG...ATGCCTTTTCGTGGCAGCTCTTGGCCAATGAGAAAATAGTTGCACGGCTCTGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS-3UTR CAA 90 bp | ATTTTAGAGGTAAGAAATGAAGCTTTTCTACCATCTGCCTTTCCACTGCGGATGGGTGAGGGCTGCGTCTaGGTCTTCATCTTCCGTCAC | + |
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Preference number: 5 (lower is better) Translates to: ILEVRNEAFLPSAFPLRMGEGCV*VFIFRH Trigger: GTGACGGAAGATGAAGACCAAGACGCAGCCCTCACC...CATCCGCAGTGGAAAGGCAGATGGTAGAAAAGCTTCATTTCTTACCTCTAAAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS-3UTR CAA 90 bp | GTTGCCGCAGCTAAAATGTTCAAGTCCCAGACTTCCATTTCCTTTCCCTCACACGGATTTTACCAGCATTaGAAGCTGATCCGTTGTGTT | + |
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Preference number: 5 (lower is better) Translates to: VAAAKMFKSQTSISFPSHGFYQH*KLIRCV Trigger: AACACAACGGATCAGCTTCAAATGCTGGTAAAATCC...GTGTGAGGGAAAGGAAATGGAAGTCTGGGACTTGAACATTTTAGCTGCGGCAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS-3UTR CAA 90 bp | CAAGTCCCAGACTTCCATTTCCTTTCCCTCACACAAGAACTTTGTAACCTTCATTGGTCAATGTGCTCTTaGCCTGACTTCCTAAGCCTG | + |
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Preference number: 5 (lower is better) Translates to: QVPDFHFLSLTQELCNLHWSMCS*PDFLSL Trigger: CAGGCTTAGGAAGTCAGGCAAAGAGCACATTGACCA...ATGAAGGTTACAAAGTTCTTGTGTGAGGGAAAGGAAATGGAAGTCTGGGACTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS-3UTR CAA 90 bp | ACTTCCATTTCCTTTCCCTCACACAAGAACTTTGTAACCTTCATAAGGCTACTGCATCTTCCGTCACACTaGACAACCGATTCTGGTGGA | + |
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Preference number: 5 (lower is better) Translates to: TSISFPSHKNFVTFIRLLHLPSH*TTDSGG Trigger: TCCACCAGAATCGGTTGTCAAGTGTGACGGAAGATG...CAGTAGCCTTATGAAGGTTACAAAGTTCTTGTGTGAGGGAAAGGAAATGGAAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS-3UTR CAA 90 bp | TTCCTTTCCCTCACACAAGAACTTTGTAACCTTCATAAGGCTACTGACTCACTAATCCCACTCACTTTCTaGTCAAGAGTCTGCCGTGTC | + |
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Preference number: 5 (lower is better) Translates to: FLSLTQELCNLHKATDSLIPLTF*SRVCRV Trigger: GACACGGCAGACTCTTGACAAGAAAGTGAGTGGGAT...TAGTGAGTCAGTAGCCTTATGAAGGTTACAAAGTTCTTGTGTGAGGGAAAGGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS TCA 90 bp | TTCTCTGGAAAAGGCTTTCTTGATGTGGTCAATGTGCTCTTTGCCTaGCTTCCTAAGCCTGGCAGATCTGCTTTCTTCAACATAATACTC | + |
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Preference number: 5 (lower is better) Translates to: FSGKGFLDVVNVLFA*LPKPGRSAFFNIIL Trigger: GAGTATTATGTTGAAGAAAGCAGATCTGCCAGGCTTAGGAAGTCAGGCAAAGAGCACATTGACCACATCAAGAAAGCCTTTTCCAGAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS-3UTR CAA 90 bp | GTGCAACTATTTTCTCATTGGCCAAGAGCTGCCACGAAAAGGCATGACGTAAGGCTTCATTATTTCTTCTaGCTTGGTTTCGACTTTGGT | + |
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Preference number: 5 (lower is better) Translates to: VQLFSHWPRAATKRHDVRLHYFF*LGFDFG Trigger: ACCAAAGTCGAAACCAAGCAAGAAGAAATAATGAAG...CCTTACGTCATGCCTTTTCGTGGCAGCTCTTGGCCAATGAGAAAATAGTTGCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS CCA 72 bp | GAGATGATGTCCACGCCCATCCCTCTGTCTACCTCCTaGCCCTCGGCCTTGGGATCCTTCGCTTTCCTAAGG | + |
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Preference number: 6 (lower is better) Translates to: EMMSTPIPLSTS*PSALGSFAFLR Trigger: CCTTAGGAAAGCGAAGGATCCCAAGGCCGAGGGCCAGGAGGTAGACAGAGGGATGGGCGTGGACATCATCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS TCA 72 bp | CGACACTGGCCACTCTGTCCAGCACGGTCACAATGGTaGGGGCTGCGTCTTGGTCTTCATCTTCCGTCACAC | + |
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Preference number: 6 (lower is better) Translates to: RHWPLCPARSQW*GLRLGLHLPSH Trigger: GTGTGACGGAAGATGAAGACCAAGACGCAGCCCTCACCATTGTGACCGTGCTGGACAGAGTGGCCAGTGTCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS CAA 72 bp | ACGCCCATCCCTCTGTCTACCTCCTGGCCCTCGGCCTaGGGATCCTTCGCTTTCCTAAGGCTCCGAATCTTA | + |
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Preference number: 6 (lower is better) Translates to: TPIPLSTSWPSA*GSFAFLRLRIL Trigger: TAAGATTCGGAGCCTTAGGAAAGCGAAGGATCCCAAGGCCGAGGGCCAGGAGGTAGACAGAGGGATGGGCGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS CAA 90 bp | ATGATGTCCACGCCCATCCCTCTGTCTACCTCCTGGCCCTCGGCCTaGGGATCCTTCGCTTTCCTAAGGCTCCGAATCTTAAAAGCTTCC | + |
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Preference number: 6 (lower is better) Translates to: MMSTPIPLSTSWPSA*GSFAFLRLRILKAS Trigger: GGAAGCTTTTAAGATTCGGAGCCTTAGGAAAGCGAAGGATCCCAAGGCCGAGGGCCAGGAGGTAGACAGAGGGATGGGCGTGGACATCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS GCA 72 bp | CTCGGGCAGGCTTCTGTCTTTAACAACAGACAGGGATaGGGGGCAGGGAATGTCCTCCTGGAAGATTACCAC | + |
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Preference number: 6 (lower is better) Translates to: LGQASVFNNRQG*GAGNVLLEDYH Trigger: GTGGTAATCTTCCAGGAGGACATTCCCTGCCCCGCATCCCTGTCTGTTGTTAAAGACAGAAGCCTGCCCGAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS CCA 72 bp | CTGTCCAGCACGGTCACAATGGTGAGGGCTGCGTCTTaGTCTTCATCTTCCGTCACACTTGACAACCGATTC | + |
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Preference number: 6 (lower is better) Translates to: LSSTVTMVRAAS*SSSSVTLDNRF Trigger: GAATCGGTTGTCAAGTGTGACGGAAGATGAAGACCAAGACGCAGCCCTCACCATTGTGACCGTGCTGGACAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS CCA 72 bp | TCTATTGGGGGATCGAAGACTTCTTCGGCCTCCTCCTaGTTCTCGGGCAGGCTTCTGTCTTTAACAACAGAC | + |
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Preference number: 6 (lower is better) Translates to: SIGGSKTSSASS*FSGRLLSLTTD Trigger: GTCTGTTGTTAAAGACAGAAGCCTGCCCGAGAACCAGGAGGAGGCCGAAGAAGTCTTCGATCCCCCAATAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS CAA 90 bp | ATCTGCTTTCTTCAACATAATACTCCTCATCCGAGGAGAGCTCTATaGGGGGATCGAAGACTTCTTCGGCCTCCTCCTGGTTCTCGGGCA | + |
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Preference number: 6 (lower is better) Translates to: ICFLQHNTPHPRRAL*GDRRLLRPPPGSRA Trigger: TGCCCGAGAACCAGGAGGAGGCCGAAGAAGTCTTCGATCCCCCAATAGAGCTCTCCTCGGATGAGGAGTATTATGTTGAAGAAAGCAGAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS TCA 72 bp | TGTTGCTTCTCTACCCGGGCCTTGACATCCTTAATGTaGGCGCTGACTTTCCGGGTCTTCTCAAACAGCTTG | + |
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Preference number: 6 (lower is better) Translates to: CCFSTRALTSLM*ALTFRVFSNSL Trigger: CAAGCTGTTTGAGAAGACCCGGAAAGTCAGCGCTCACATTAAGGATGTCAAGGCCCGGGTAGAGAAGCAACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS CAA 72 bp | CTTCAACATAATACTCCTCATCCGAGGAGAGCTCTATaGGGGGATCGAAGACTTCTTCGGCCTCCTCCTGGT | + |
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Preference number: 6 (lower is better) Translates to: LQHNTPHPRRAL*GDRRLLRPPPG Trigger: ACCAGGAGGAGGCCGAAGAAGTCTTCGATCCCCCAATAGAGCTCTCCTCGGATGAGGAGTATTATGTTGAAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS CCA 72 bp | TTTTCTGTTTCACTGAACTCATCAGAGTGGAACTCATaGATGGGCCCCAGAGCCAGGCTACCTGAGATGATG | + |
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Preference number: 6 (lower is better) Translates to: FSVSLNSSEWNS*MGPRARLPEMM Trigger: CATCATCTCAGGTAGCCTGGCTCTGGGGCCCATCCATGAGTTCCACTCTGATGAGTTCAGTGAAACAGAAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS CCA 72 bp | ACAACAGACAGGGATGCGGGGCAGGGAATGTCCTCCTaGAAGATTACCACTCGGAATTTGTTTTTCTTCATT | + |
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Preference number: 6 (lower is better) Translates to: TTDRDAGQGMSS*KITTRNLFFFI Trigger: AATGAAGAAAAACAAATTCCGAGTGGTAATCTTCCAGGAGGACATTCCCTGCCCCGCATCCCTGTCTGTTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS CCA 72 bp | TTGCTGTGTGACTGTGAGAGCTTCAGCAGGTCTATTTaGACAGACTTTATCGCGTTACCCATTTCTCTGTGT | + |
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Preference number: 6 (lower is better) Translates to: LLCDCESFSRSI*TDFIALPISLC Trigger: ACACAGAGAAATGGGTAACGCGATAAAGTCTGTCCAAATAGACCTGCTGAAGCTCTCACAGTCACACAGCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS TCA 72 bp | CGCTTTCCTAAGGCTCCGAATCTTAAAAGCTTCCTTTaGGGGAGCGGCACTGGAAATCGATTTCTTAAATCT | + |
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Preference number: 6 (lower is better) Translates to: RFPKAPNLKSFL*GSGTGNRFLKS Trigger: AGATTTAAGAAATCGATTTCCAGTGCCGCTCCCTCAAAGGAAGCTTTTAAGATTCGGAGCCTTAGGAAAGCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS CCA 72 bp | TCTTCATCTTCCGTCACACTTGACAACCGATTCTGGTaGATTTTACCAGCATTTGAAGCTGATCCGTTGTGT | + |
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Preference number: 6 (lower is better) Translates to: SSSSVTLDNRFW*ILPAFEADPLC Trigger: ACACAACGGATCAGCTTCAAATGCTGGTAAAATCCACCAGAATCGGTTGTCAAGTGTGACGGAAGATGAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS CCA 72 bp | TTCTGCATGTTTTCTCTGGAAAAGGCTTTCTTGATGTaGTCAATGTGCTCTTTGCCTGACTTCCTAAGCCTG | + |
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Preference number: 6 (lower is better) Translates to: FCMFSLEKAFLM*SMCSLPDFLSL Trigger: CAGGCTTAGGAAGTCAGGCAAAGAGCACATTGACCACATCAAGAAAGCCTTTTCCAGAGAAAACATGCAGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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| CDS CAA 72 bp | GGAGTGACTATCCTAGTTCTAATCCCACTCACTTTCTaGTCAAGAGTCTGCCGTGTCTTCTGCATGTTTTCT | + |
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Preference number: 6 (lower is better) Translates to: GVTILVLIPLTF*SRVCRVFCMFS Trigger: AGAAAACATGCAGAAGACACGGCAGACTCTTGACAAGAAAGTGAGTGGGATTAGAACTAGGATAGTCACTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030033.5 |
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