Pregenerated sensors for CAVIN3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037060Ensembl transcript IDs: ENSMUST00000047040.4
Found 86 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAATATTTCTCCGTGCCAATGGAGGACCCAGGATTCGGTGAAAAGTaGGAACGTTTGTCATTCAGCCCATTCCTTCCCCAAGCCATGCGC | + |
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Preference number: 1 (lower is better) Translates to: QYFSVPMEDPGFGEK*ERLSFSPFLPQAMR Trigger: GCGCATGGCTTGGGGAAGGAATGGGCTGAATGACAAACGTTCTCACTTTTCACCGAATCCTGGGTCCTCCATTGGCACGGAGAAATATTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| 3UTR CCA 90 bp | GGACACAGGGTTCAGACTGGAAAGCCAGGAAGGAAGCTTTGGAGCTaGGCAGTGGATGCAGGATTCTCTCCTTATTTGGATGTAAGTGCT | + |
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Preference number: 1 (lower is better) Translates to: GHRVQTGKPGRKLWS*AVDAGFSPYLDVSA Trigger: AGCACTTACATCCAAATAAGGAGAGAATCCTGCATCCACTGCCCAGCTCCAAAGCTTCCTTCCTGGCTTTCCAGTCTGAACCCTGTGTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| 3UTR CCA 90 bp | GTCAGAGGACACAGGGTTCAGACTGGAAAGCCAGGAAGGAAGCTTTaGAGCTGGGCAGTGGATGCAGGATTCTCTCCTTATTTGGATGTA | + |
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Preference number: 1 (lower is better) Translates to: VRGHRVQTGKPGRKL*SWAVDAGFSPYLDV Trigger: TACATCCAAATAAGGAGAGAATCCTGCATCCACTGCCCAGCTCCAAAGCTTCCTTCCTGGCTTTCCAGTCTGAACCCTGTGTCCTCTGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| 3UTR-3UTR CCA 90 bp | TTCAGACTGGAAAGCCAGGAAGGAAGCTTTGGAGCTGGGCAGTGGATGCAGGATGGCTTAAGCACCGAATaGGACAGGCAGCCCCAGGGA | + |
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Preference number: 2 (lower is better) Translates to: FRLESQEGSFGAGQWMQDGLSTE*DRQPQG Trigger: TCCCTGGGGCTGCCTGTCCCATTCGGTGCTTAAGCC...ATCCTGCATCCACTGCCCAGCTCCAAAGCTTCCTTCCTGGCTTTCCAGTCTGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| 3UTR CAA 90 bp | TGTCAGAGGACACAGGGTTCAGACTGGAAAGCCAGGAAGGAAGCTTaGGAGCTGGGCAGTGGATGCAGGATTCTCTCCTTATTTGGATGT | + |
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Preference number: 2 (lower is better) Translates to: CQRTQGSDWKARKEA*ELGSGCRILSLFGC Trigger: ACATCCAAATAAGGAGAGAATCCTGCATCCACTGCCCAGCTCCAAAGCTTCCTTCCTGGCTTTCCAGTCTGAACCCTGTGTCCTCTGACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| 3UTR-3UTR CCA 90 bp | CCAAGAGGAATGTATTTAAGCAGTAAGTGGCCAATATTTCTCCGTGCCAATGGATTTGGAGCTGGGCAGTaGATGCAGGATTCTCTCCTT | + |
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Preference number: 2 (lower is better) Translates to: PRGMYLSSKWPIFLRANGFGAGQ*MQDSLL Trigger: AAGGAGAGAATCCTGCATCCACTGCCCAGCTCCAAA...TCCATTGGCACGGAGAAATATTGGCCACTTACTGCTTAAATACATTCCTCTTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| 3UTR CAA 90 bp | AGGAAGCTTTGGAGCTGGGCAGTGGATGCAGGATTCTCTCCTTATTaGGATGTAAGTGCTGCACTCTATAAGTACTTATTTTGGGACAAG | + |
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Preference number: 2 (lower is better) Translates to: RKLWSWAVDAGFSPY*DVSAALYKYLFWDK Trigger: CTTGTCCCAAAATAAGTACTTATAGAGTGCAGCACTTACATCCAAATAAGGAGAGAATCCTGCATCCACTGCCCAGCTCCAAAGCTTCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| 3UTR-3UTR TCA 90 bp | TTTTGTTGGCAGAAGGAAAGTAGACCAAGGGCTGTTTTTGGATTGCTTTCTAAAGGATTCGGTGAAAAGTaGGAACGTTTGTCATTCAGC | + |
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Preference number: 2 (lower is better) Translates to: FCWQKESRPRAVFGLLSKGFGEK*ERLSFS Trigger: GCTGAATGACAAACGTTCTCACTTTTCACCGAATCC...TTTAGAAAGCAATCCAAAAACAGCCCTTGGTCTACTTTCCTTCTGCCAACAAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| 3UTR TCA 72 bp | TCCGTGCCAATGGAGGACCCAGGATTCGGTGAAAAGTaGGAACGTTTGTCATTCAGCCCATTCCTTCCCCAA | + |
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Preference number: 3 (lower is better) Translates to: SVPMEDPGFGEK*ERLSFSPFLPQ Trigger: TTGGGGAAGGAATGGGCTGAATGACAAACGTTCTCACTTTTCACCGAATCCTGGGTCCTCCATTGGCACGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| 3UTR TCA 72 bp | CCCAAGCCATGCGCATTGTCGCTCGCCCTTTCTCATTaGGTCTGGGTTAGAGAAAATTGCTTTTATTGGTGG | + |
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Preference number: 3 (lower is better) Translates to: PKPCALSLALSH*VWVRENCFYWW Trigger: CCACCAATAAAAGCAATTTTCTCTAACCCAGACTCAATGAGAAAGGGCGAGCGACAATGCGCATGGCTTGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| 3UTR TCA 72 bp | CTAAATGCACCCCAACCCAATGGTGTGAGCTGTCTGTaGGTGTCAGACACCAGAAGTAGGAAGAGTGCATTA | + |
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Preference number: 3 (lower is better) Translates to: LNAPQPNGVSCL*VSDTRSRKSAL Trigger: TAATGCACTCTTCCTACTTCTGGTGTCTGACACTCACAGACAGCTCACACCATTGGGTTGGGGTGCATTTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| 3UTR-3UTR CAA 90 bp | AAGGAAAGTAGACCAAGGGCTGTTTTTGGATTGCTTTCTAAATGCACCCCAACCGGATTCTCTCCTTATTaGGATGTAAGTGCTGCACTC | + |
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Preference number: 3 (lower is better) Translates to: KESRPRAVFGLLSKCTPTGFSPY*DVSAAL Trigger: GAGTGCAGCACTTACATCCAAATAAGGAGAGAATCC...GGTTGGGGTGCATTTAGAAAGCAATCCAAAAACAGCCCTTGGTCTACTTTCCTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS-3UTR TCA 90 bp | CTGAAAGCTCCTCTGTCAGAGGACACAGGGTTCAGACTGGAAAGCCAGGAAGGATCCAACCGCTGCACCTaGGCAGCGCGACGCACGGCC | + |
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Preference number: 4 (lower is better) Translates to: LKAPLSEDTGFRLESQEGSNRCT*AARRTA Trigger: GGCCGTGCGTCGCGCTGCTCAGGTGCAGCGGTTGGA...TCCTTCCTGGCTTTCCAGTCTGAACCCTGTGTCCTCTGACAGAGGAGCTTTCAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS-3UTR CCA 90 bp | AGTGAGAACGTTTGTCATTCAGCCCATTCCTTCCCCAAGCCATGCGCATTGTCGCCACGCGCTCCGCCTTaGCCAGCAGCTGCGTCAGTG | + |
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Preference number: 4 (lower is better) Translates to: SENVCHSAHSFPKPCALSPRAPP*PAAASV Trigger: CACTGACGCAGCTGCTGGCCAAGGCGGAGCGCGTGG...CGACAATGCGCATGGCTTGGGGAAGGAATGGGCTGAATGACAAACGTTCTCACT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS-3UTR CCA 90 bp | AGTGAGAACGTTTGTCATTCAGCCCATTCCTTCCCCAAGCCATGCGCATTGTCGGCCACCAGCAGCCCGTaGTTGGCCTCCAACCGCTGC | + |
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Preference number: 4 (lower is better) Translates to: SENVCHSAHSFPKPCALSATSSP*LASNRC Trigger: GCAGCGGTTGGAGGCCAACCACGGGCTGCTGGTGGC...CGACAATGCGCATGGCTTGGGGAAGGAATGGGCTGAATGACAAACGTTCTCACT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS-3UTR CCA 90 bp | CTGAAAGCTCCTCTGTCAGAGGACACAGGGTTCAGACTGGAAAGCCAGGAAGGATTGCTGGTGGTGTCGTaGCTGCGACTCAGCGCACCC | + |
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Preference number: 4 (lower is better) Translates to: LKAPLSEDTGFRLESQEGLLVVS*LRLSAP Trigger: GGGTGCGCTGAGTCGCAGCCACGACACCACCAGCAA...TCCTTCCTGGCTTTCCAGTCTGAACCCTGTGTCCTCTGACAGAGGAGCTTTCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS-3UTR CCA 90 bp | CTGAAAGCTCCTCTGTCAGAGGACACAGGGTTCAGACTGGAAAGCCAGGAAGGAGCGTCAGTGTGTTGCTaGTGGTGTCGTGGCTGCGAC | + |
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Preference number: 4 (lower is better) Translates to: LKAPLSEDTGFRLESQEGASVCC*WCRGCD Trigger: GTCGCAGCCACGACACCACCAGCAACACACTGACGC...TCCTTCCTGGCTTTCCAGTCTGAACCCTGTGTCCTCTGACAGAGGAGCTTTCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS-3UTR TCA 90 bp | AGTGAGAACGTTTGTCATTCAGCCCATTCCTTCCCCAAGCCATGCGCATTGTCGACTTCATCCTCTGGCTaGTCTGGGCCCAGCACCAAC | + |
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Preference number: 4 (lower is better) Translates to: SENVCHSAHSFPKPCALSTSSSG*SGPSTN Trigger: GTTGGTGCTGGGCCCAGATCAGCCAGAGGATGAAGT...CGACAATGCGCATGGCTTGGGGAAGGAATGGGCTGAATGACAAACGTTCTCACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS-3UTR TCA 90 bp | GCCGGGCCCCAAAGTTGTACTTATGTGTCCCCAAGAGGAATGTATTTAAGCAGTTGCAGGCTGGCCTTCTaGTGGGCCTTCAGAGCTCCG | + |
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Preference number: 4 (lower is better) Translates to: AGPQSCTYVSPRGMYLSSCRLAF*WAFRAP Trigger: CGGAGCTCTGAAGGCCCATCAGAAGGCCAGCCTGCA...ACTGCTTAAATACATTCCTCTTGGGGACACATAAGTACAACTTTGGGGCCCGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS-3UTR TCA 90 bp | AGTGAGAACGTTTGTCATTCAGCCCATTCCTTCCCCAAGCCATGCGCATTGTCGGACTCCATTTCAGGCTaGGCTGCAGGCTGGCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: SENVCHSAHSFPKPCALSDSISG*AAGWPS Trigger: AGAAGGCCAGCCTGCAGCTCAGCCTGAAATGGAGTC...CGACAATGCGCATGGCTTGGGGAAGGAATGGGCTGAATGACAAACGTTCTCACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS-3UTR CCA 90 bp | GCCGGGCCCCAAAGTTGTACTTATGTGTCCCCAAGAGGAATGTATTTAAGCAGTGCAGCCGCTGAGCCCTaGACTCCACTGGCTCCTCTT | + |
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Preference number: 4 (lower is better) Translates to: AGPQSCTYVSPRGMYLSSAAAEP*TPLAPL Trigger: AAGAGGAGCCAGTGGAGTCCAGGGCTCAGCGGCTGC...ACTGCTTAAATACATTCCTCTTGGGGACACATAAGTACAACTTTGGGGCCCGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS-3UTR CCA 90 bp | AAGCCAGGAAGGAAGCTTTGGAGCTGGGCAGTGGATGCAGGATTCTCTCCTTATAGGTTGAGGAGGTTCTaGCTCCAGGGCAGTCTCGAG | + |
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Preference number: 4 (lower is better) Translates to: KPGRKLWSWAVDAGFSPYRLRRF*LQGSLE Trigger: CTCGAGACTGCCCTGGAGCCAGAACCTCCTCAACCT...ATAAGGAGAGAATCCTGCATCCACTGCCCAGCTCCAAAGCTTCCTTCCTGGCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS-3UTR TCA 90 bp | TTTTGTTGGCAGAAGGAAAGTAGACCAAGGGCTGTTTTTGGATTGCTTTCTAAAGTGCGGCGCAGCCGCTaGGCCCTGGACTCCACTGGC | + |
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Preference number: 4 (lower is better) Translates to: FCWQKESRPRAVFGLLSKVRRSR*ALDSTG Trigger: GCCAGTGGAGTCCAGGGCTCAGCGGCTGCGCCGCAC...TTTAGAAAGCAATCCAAAAACAGCCCTTGGTCTACTTTCCTTCTGCCAACAAAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS-3UTR GCA 90 bp | AAGGAAAGTAGACCAAGGGCTGTTTTTGGATTGCTTTCTAAATGCACCCCAACCTGGTGGTGTCGTGGCTaGGACTCAGCGCACCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: KESRPRAVFGLLSKCTPTWWCRG*DSAHPG Trigger: GCCTGGGTGCGCTGAGTCGCAGCCACGACACCACCA...GGTTGGGGTGCATTTAGAAAGCAATCCAAAAACAGCCCTTGGTCTACTTTCCTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS-3UTR GCA 90 bp | GCCGGGCCCCAAAGTTGTACTTATGTGTCCCCAAGAGGAATGTATTTAAGCAGTGCTGCGTCAGTGTGTTaGTGGTGGTGTCGTGGCTGC | + |
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Preference number: 4 (lower is better) Translates to: AGPQSCTYVSPRGMYLSSAASVC*WWCRGC Trigger: GCAGCCACGACACCACCAGCAACACACTGACGCAGC...ACTGCTTAAATACATTCCTCTTGGGGACACATAAGTACAACTTTGGGGCCCGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS-3UTR CCA 90 bp | AAAGTGAGAACGTTTGTCATTCAGCCCATTCCTTCCCCAAGCCATGCGCATTGTATCCTCTGGCTGATCTaGGCCCAGCACCAACTGGTC | + |
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Preference number: 4 (lower is better) Translates to: KVRTFVIQPIPSPSHAHCILWLI*AQHQLV Trigger: GACCAGTTGGTGCTGGGCCCAGATCAGCCAGAGGAT...ACAATGCGCATGGCTTGGGGAAGGAATGGGCTGAATGACAAACGTTCTCACTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS-3UTR GCA 90 bp | AGAAGGAAAGTAGACCAAGGGCTGTTTTTGGATTGCTTTCTAAATGCACCCCAATTGAAGAGCAGGACGTaGAGCTTCCCGCGCGCCACC | + |
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Preference number: 4 (lower is better) Translates to: RRKVDQGLFLDCFLNAPQLKSRT*SFPRAT Trigger: GGTGGCGCGCGGGAAGCTGCACGTCCTGCTCTTCAA...TTGGGGTGCATTTAGAAAGCAATCCAAAAACAGCCCTTGGTCTACTTTCCTTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS-3UTR CCA 90 bp | GCCGGGCCCCAAAGTTGTACTTATGTGTCCCCAAGAGGAATGTATTTAAGCAGTGCAGAGCCTCCAGCATaGTGGCCAATTTCTCCAGCA | + |
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Preference number: 4 (lower is better) Translates to: AGPQSCTYVSPRGMYLSSAEPPA*WPISPA Trigger: TGCTGGAGAAATTGGCCACCATGCTGGAGGCTCTGC...ACTGCTTAAATACATTCCTCTTGGGGACACATAAGTACAACTTTGGGGCCCGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS-3UTR CCA 90 bp | CCAAGAGGAATGTATTTAAGCAGTAAGTGGCCAATATTTCTCCGTGCCAATGGACGGACCCAAGAGCTCTaGGACTTTCTGGAAGGCGCG | + |
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Preference number: 4 (lower is better) Translates to: PRGMYLSSKWPIFLRANGRTQEL*DFLEGA Trigger: CGCGCCTTCCAGAAAGTCCCAGAGCTCTTGGGTCCG...TCCATTGGCACGGAGAAATATTGGCCACTTACTGCTTAAATACATTCCTCTTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS-3UTR CCA 90 bp | AAGGAAAGTAGACCAAGGGCTGTTTTTGGATTGCTTTCTAAATGCACCCCAACCAGCTCTGGGACTTTCTaGAAGGCGCGGGCTGGAATT | + |
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Preference number: 4 (lower is better) Translates to: KESRPRAVFGLLSKCTPTSSGTF*KARAGI Trigger: AATTCCAGCCCGCGCCTTCCAGAAAGTCCCAGAGCT...GGTTGGGGTGCATTTAGAAAGCAATCCAAAAACAGCCCTTGGTCTACTTTCCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS-3UTR CCA 90 bp | AAGGAAAGTAGACCAAGGGCTGTTTTTGGATTGCTTTCTAAATGCACCCCAACCAGCCCTGGACTCCACTaGCTCCTCTTCAGAACTCTC | + |
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Preference number: 4 (lower is better) Translates to: KESRPRAVFGLLSKCTPTSPGLH*LLFRTL Trigger: GAGAGTTCTGAAGAGGAGCCAGTGGAGTCCAGGGCT...GGTTGGGGTGCATTTAGAAAGCAATCCAAAAACAGCCCTTGGTCTACTTTCCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS-3UTR TCA 90 bp | AGAAGGAAAGTAGACCAAGGGCTGTTTTTGGATTGCTTTCTAAATGCACCCCAATCTTCCTTGGTAGGTTaGGGAGGTTCTGGCTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: RRKVDQGLFLDCFLNAPQSSLVG*GGSGSR Trigger: CCTGGAGCCAGAACCTCCTCAACCTACCAAGGAAGA...TTGGGGTGCATTTAGAAAGCAATCCAAAAACAGCCCTTGGTCTACTTTCCTTCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS-3UTR CCA 90 bp | AGAAGGAAAGTAGACCAAGGGCTGTTTTTGGATTGCTTTCTAAATGCACCCCAAGAGCCTCCAGCATGGTaGCCAATTTCTCCAGCAAGG | + |
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Preference number: 4 (lower is better) Translates to: RRKVDQGLFLDCFLNAPQEPPAW*PISPAR Trigger: CCTTGCTGGAGAAATTGGCCACCATGCTGGAGGCTC...TTGGGGTGCATTTAGAAAGCAATCCAAAAACAGCCCTTGGTCTACTTTCCTTCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS-3UTR CCA 90 bp | AGAAGGAAAGTAGACCAAGGGCTGTTTTTGGATTGCTTTCTAAATGCACCCCAACTGGAAGGCGCGGGCTaGAATTTCAGTCTCCTCCTT | + |
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Preference number: 4 (lower is better) Translates to: RRKVDQGLFLDCFLNAPQLEGAG*NFSLLL Trigger: AAGGAGGAGACTGAAATTCCAGCCCGCGCCTTCCAG...TTGGGGTGCATTTAGAAAGCAATCCAAAAACAGCCCTTGGTCTACTTTCCTTCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS-3UTR CCA 90 bp | TTTTGTTGGCAGAAGGAAAGTAGACCAAGGGCTGTTTTTGGATTGCTTTCTAAATCCAACTTCATCCTCTaGCTGATCTGGGCCCAGCAC | + |
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Preference number: 4 (lower is better) Translates to: FCWQKESRPRAVFGLLSKSNFIL*LIWAQH Trigger: GTGCTGGGCCCAGATCAGCCAGAGGATGAAGTTGGA...TTTAGAAAGCAATCCAAAAACAGCCCTTGGTCTACTTTCCTTCTGCCAACAAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| 3UTR CAA 72 bp | TTTGTTGGCAGAAGGAAAGTAGACCAAGGGCTGTTTTaGGATTGCTTTCTAAATGCACCCCAACCCAATGGT | + |
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Preference number: 4 (lower is better) Translates to: FVGRRKVDQGLF*DCFLNAPQPNG Trigger: ACCATTGGGTTGGGGTGCATTTAGAAAGCAATCCAAAAACAGCCCTTGGTCTACTTTCCTTCTGCCAACAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS-3UTR TCA 90 bp | AGAAGGAAAGTAGACCAAGGGCTGTTTTTGGATTGCTTTCTAAATGCACCCCAAGCCCTTTTCAGGCTTTaGACTTTCTGTAAACCAGTG | + |
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Preference number: 4 (lower is better) Translates to: RRKVDQGLFLDCFLNAPQALFRL*TFCKPV Trigger: CACTGGTTTACAGAAAGTTCAAAGCCTGAAAAGGGC...TTGGGGTGCATTTAGAAAGCAATCCAAAAACAGCCCTTGGTCTACTTTCCTTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS GCA 90 bp | CAACCGCTGCACCTGAGCAGCGCGACGCACGGCCCGCTCCTGGGCTaGGTCGGCGTGCGAGCCCACGCGCTCCGCCTTGGCCAGCAGCTG | + |
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Preference number: 5 (lower is better) Translates to: QPLHLSSATHGPLLG*VGVRAHALRLGQQL Trigger: CAGCTGCTGGCCAAGGCGGAGCGCGTGGGCTCGCACGCCGACGCAGCCCAGGAGCGGGCCGTGCGTCGCGCTGCTCAGGTGCAGCGGTTG 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS CCA 90 bp | CCCGCTCCTGGGCTGCGTCGGCGTGCGAGCCCACGCGCTCCGCCTTaGCCAGCAGCTGCGTCAGTGTGTTGCTGGTGGTGTCGTGGCTGC | + |
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Preference number: 5 (lower is better) Translates to: PAPGLRRRASPRAPP*PAAASVCCWWCRGC Trigger: GCAGCCACGACACCACCAGCAACACACTGACGCAGCTGCTGGCCAAGGCGGAGCGCGTGGGCTCGCACGCCGACGCAGCCCAGGAGCGGG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS CCA 90 bp | AGAGCAGGACGTGCAGCTTCCCGCGCGCCACCAGCAGCCCGTGGTTaGCCTCCAACCGCTGCACCTGAGCAGCGCGACGCACGGCCCGCT | + |
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Preference number: 5 (lower is better) Translates to: RAGRAASRAPPAARG*PPTAAPEQRDARPA Trigger: AGCGGGCCGTGCGTCGCGCTGCTCAGGTGCAGCGGTTGGAGGCCAACCACGGGCTGCTGGTGGCGCGCGGGAAGCTGCACGTCCTGCTCT 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS GCA 90 bp | TGGTGGTGTCGTGGCTGCGACTCAGCGCACCCAGGCCACTCTGTATaGGACGCACGGAGCCCGCCAGGCCGCCCTGCCTCTCAGCCAGGC | + |
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Preference number: 5 (lower is better) Translates to: WWCRGCDSAHPGHSV*DARSPPGRPASQPG Trigger: GCCTGGCTGAGAGGCAGGGCGGCCTGGCGGGCTCCGTGCGTCGCATACAGAGTGGCCTGGGTGCGCTGAGTCGCAGCCACGACACCACCA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS GCA 90 bp | GCTGCGTCGGCGTGCGAGCCCACGCGCTCCGCCTTGGCCAGCAGCTaGGTCAGTGTGTTGCTGGTGGTGTCGTGGCTGCGACTCAGCGCA | + |
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Preference number: 5 (lower is better) Translates to: AASACEPTRSALASS*VSVLLVVSWLRLSA Trigger: TGCGCTGAGTCGCAGCCACGACACCACCAGCAACACACTGACGCAGCTGCTGGCCAAGGCGGAGCGCGTGGGCTCGCACGCCGACGCAGC 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS GCA 90 bp | TTTCTCCAGCAAGGTCACCACGGTGACTGCGTGCACCGGACCCCCTaGGGGCGTCTCAGGCACAGGTCCGGGCTCCAGTGCGCTCTCCCC | + |
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Preference number: 5 (lower is better) Translates to: FLQQGHHGDCVHRTP*GRLRHRSGLQCALP Trigger: GGGGAGAGCGCACTGGAGCCCGGACCTGTGCCTGAGACGCCCGCAGGGGGTCCGGTGCACGCAGTCACCGTGGTGACCTTGCTGGAGAAA 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS GCA 90 bp | GCGAGCCCACGCGCTCCGCCTTGGCCAGCAGCTGCGTCAGTGTGTTaGTGGTGGTGTCGTGGCTGCGACTCAGCGCACCCAGGCCACTCT | + |
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Preference number: 5 (lower is better) Translates to: ASPRAPPWPAAASVC*WWCRGCDSAHPGHS Trigger: AGAGTGGCCTGGGTGCGCTGAGTCGCAGCCACGACACCACCAGCAACACACTGACGCAGCTGCTGGCCAAGGCGGAGCGCGTGGGCTCGC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS GCA 90 bp | AGCATGGTGGCCAATTTCTCCAGCAAGGTCACCACGGTGACTGCGTaGACCGGACCCCCTGCGGGCGTCTCAGGCACAGGTCCGGGCTCC | + |
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Preference number: 5 (lower is better) Translates to: SMVANFSSKVTTVTA*TGPPAGVSGTGPGS Trigger: GGAGCCCGGACCTGTGCCTGAGACGCCCGCAGGGGGTCCGGTGCACGCAGTCACCGTGGTGACCTTGCTGGAGAAATTGGCCACCATGCT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS CCA 90 bp | CCACGCGCTCCGCCTTGGCCAGCAGCTGCGTCAGTGTGTTGCTGGTaGTGTCGTGGCTGCGACTCAGCGCACCCAGGCCACTCTGTATGC | + |
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Preference number: 5 (lower is better) Translates to: PRAPPWPAAASVCCW*CRGCDSAHPGHSVC Trigger: GCATACAGAGTGGCCTGGGTGCGCTGAGTCGCAGCCACGACACCACCAGCAACACACTGACGCAGCTGCTGGCCAAGGCGGAGCGCGTGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS CCA 90 bp | AGCCCACGCGCTCCGCCTTGGCCAGCAGCTGCGTCAGTGTGTTGCTaGTGGTGTCGTGGCTGCGACTCAGCGCACCCAGGCCACTCTGTA | + |
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Preference number: 5 (lower is better) Translates to: SPRAPPWPAAASVCC*WCRGCDSAHPGHSV Trigger: TACAGAGTGGCCTGGGTGCGCTGAGTCGCAGCCACGACACCACCAGCAACACACTGACGCAGCTGCTGGCCAAGGCGGAGCGCGTGGGCT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS TCA 90 bp | GAGCCTCCAGCATGGTGGCCAATTTCTCCAGCAAGGTCACCACGGTaGCTGCGTGCACCGGACCCCCTGCGGGCGTCTCAGGCACAGGTC | + |
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Preference number: 5 (lower is better) Translates to: EPPAWWPISPARSPR*LRAPDPLRASQAQV Trigger: GACCTGTGCCTGAGACGCCCGCAGGGGGTCCGGTGCACGCAGTCACCGTGGTGACCTTGCTGGAGAAATTGGCCACCATGCTGGAGGCTC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS GCA 90 bp | CCTTGGCCAGCAGCTGCGTCAGTGTGTTGCTGGTGGTGTCGTGGCTaGGACTCAGCGCACCCAGGCCACTCTGTATGCGACGCACGGAGC | + |
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Preference number: 5 (lower is better) Translates to: PWPAAASVCCWWCRG*DSAHPGHSVCDARS Trigger: GCTCCGTGCGTCGCATACAGAGTGGCCTGGGTGCGCTGAGTCGCAGCCACGACACCACCAGCAACACACTGACGCAGCTGCTGGCCAAGG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS CCA 90 bp | TCCGCCTTGGCCAGCAGCTGCGTCAGTGTGTTGCTGGTGGTGTCGTaGCTGCGACTCAGCGCACCCAGGCCACTCTGTATGCGACGCACG | + |
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Preference number: 5 (lower is better) Translates to: SALASSCVSVLLVVS*LRLSAPRPLCMRRT Trigger: CGTGCGTCGCATACAGAGTGGCCTGGGTGCGCTGAGTCGCAGCCACGACACCACCAGCAACACACTGACGCAGCTGCTGGCCAAGGCGGA 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS GCA 90 bp | AAGGCGCGGGCTGGAATTTCAGTCTCCTCCTTGAAGAGCAGGACGTaGAGCTTCCCGCGCGCCACCAGCAGCCCGTGGTTGGCCTCCAAC | + |
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Preference number: 5 (lower is better) Translates to: KARAGISVSSLKSRT*SFPRATSSPWLASN Trigger: GTTGGAGGCCAACCACGGGCTGCTGGTGGCGCGCGGGAAGCTGCACGTCCTGCTCTTCAAGGAGGAGACTGAAATTCCAGCCCGCGCCTT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS TCA 90 bp | CTGGGACTTTCTGGAAGGCGCGGGCTGGAATTTCAGTCTCCTCCTTaGAGAGCAGGACGTGCAGCTTCCCGCGCGCCACCAGCAGCCCGT | + |
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Preference number: 5 (lower is better) Translates to: LGLSGRRGLEFQSPP*RAGRAASRAPPAAR Trigger: ACGGGCTGCTGGTGGCGCGCGGGAAGCTGCACGTCCTGCTCTTCAAGGAGGAGACTGAAATTCCAGCCCGCGCCTTCCAGAAAGTCCCAG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS-3UTR CAA 90 bp | GACTGGAAAGCCAGGAAGGAAGCTTTGGAGCTGGGCAGTGGATGCAGGATTCTCCCCACGCGCTCCGCCTaGGCCAGCAGCTGCGTCAGT | + |
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Preference number: 5 (lower is better) Translates to: DWKARKEALELGSGCRILPTRSA*ASSCVS Trigger: ACTGACGCAGCTGCTGGCCAAGGCGGAGCGCGTGGG...GAGAATCCTGCATCCACTGCCCAGCTCCAAAGCTTCCTTCCTGGCTTTCCAGTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS CCA 90 bp | TGGGCCTTCAGAGCTCCGGACAGGCCCTACGCGTGGCGGCTTGACTaGTGTGGGCTGTGCTGCTTTACGACTGGAAAGAGCCCTTTTCAG | + |
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Preference number: 5 (lower is better) Translates to: WAFRAPDRPYAWRLD*CGLCCFTTGKSPFQ Trigger: CTGAAAAGGGCTCTTTCCAGTCGTAAAGCAGCACAGCCCACACCAGTCAAGCCGCCACGCGTAGGGCCTGTCCGGAGCTCTGAAGGCCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS CCA 90 bp | CCCAGCACCAACTGGTCCTCCGGACCCAAGAGCTCTGGGACTTTCTaGAAGGCGCGGGCTGGAATTTCAGTCTCCTCCTTGAAGAGCAGG | + |
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Preference number: 5 (lower is better) Translates to: PSTNWSSGPKSSGTF*KARAGISVSSLKSR Trigger: CCTGCTCTTCAAGGAGGAGACTGAAATTCCAGCCCGCGCCTTCCAGAAAGTCCCAGAGCTCTTGGGTCCGGAGGACCAGTTGGTGCTGGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS CCA 90 bp | CTGATCTGGGCCCAGCACCAACTGGTCCTCCGGACCCAAGAGCTCTaGGACTTTCTGGAAGGCGCGGGCTGGAATTTCAGTCTCCTCCTT | + |
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Preference number: 5 (lower is better) Translates to: LIWAQHQLVLRTQEL*DFLEGAGWNFSLLL Trigger: AAGGAGGAGACTGAAATTCCAGCCCGCGCCTTCCAGAAAGTCCCAGAGCTCTTGGGTCCGGAGGACCAGTTGGTGCTGGGCCCAGATCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS GCA 90 bp | CCGGACAGGCCCTACGCGTGGCGGCTTGACTGGTGTGGGCTGTGCTaGTTTACGACTGGAAAGAGCCCTTTTCAGGCTTTGAACTTTCTG | + |
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Preference number: 5 (lower is better) Translates to: PDRPYAWRLDWCGLC*FTTGKSPFQALNFL Trigger: CAGAAAGTTCAAAGCCTGAAAAGGGCTCTTTCCAGTCGTAAAGCAGCACAGCCCACACCAGTCAAGCCGCCACGCGTAGGGCCTGTCCGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS GCA 90 bp | GCTCCGGACAGGCCCTACGCGTGGCGGCTTGACTGGTGTGGGCTGTaGTGCTTTACGACTGGAAAGAGCCCTTTTCAGGCTTTGAACTTT | + |
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Preference number: 5 (lower is better) Translates to: APDRPYAWRLDWCGL*CFTTGKSPFQALNF Trigger: AAAGTTCAAAGCCTGAAAAGGGCTCTTTCCAGTCGTAAAGCAGCACAGCCCACACCAGTCAAGCCGCCACGCGTAGGGCCTGTCCGGAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS-3UTR CAA 90 bp | AGAAGGAAAGTAGACCAAGGGCTGTTTTTGGATTGCTTTCTAAATGCACCCCAACTCAGCCAGGCCGCCTaGCCGCTCCCGCAGAGCCTC | + |
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Preference number: 5 (lower is better) Translates to: RRKVDQGLFLDCFLNAPQLSQAA*PLPQSL Trigger: GAGGCTCTGCGGGAGCGGCAAGGCGGCCTGGCTGAG...TTGGGGTGCATTTAGAAAGCAATCCAAAAACAGCCCTTGGTCTACTTTCCTTCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS-3UTR CAA 90 bp | GACTGGAAAGCCAGGAAGGAAGCTTTGGAGCTGGGCAGTGGATGCAGGATTCTCATTTCAGTCTCCTCCTaGAAGAGCAGGACGTGCAGC | + |
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Preference number: 5 (lower is better) Translates to: DWKARKEALELGSGCRILISVSS*KSRTCS Trigger: GCTGCACGTCCTGCTCTTCAAGGAGGAGACTGAAAT...GAGAATCCTGCATCCACTGCCCAGCTCCAAAGCTTCCTTCCTGGCTTTCCAGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS-3UTR CAA 90 bp | CCAAGAGGAATGTATTTAAGCAGTAAGTGGCCAATATTTCTCCGTGCCAATGGAAGCTGCGTCAGTGTGTaGCTGGTGGTGTCGTGGCTG | + |
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Preference number: 5 (lower is better) Translates to: PRGMYLSSKWPIFLRANGSCVSV*LVVSWL Trigger: CAGCCACGACACCACCAGCAACACACTGACGCAGCT...TCCATTGGCACGGAGAAATATTGGCCACTTACTGCTTAAATACATTCCTCTTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS GCA 72 bp | CACCTGAGCAGCGCGACGCACGGCCCGCTCCTGGGCTaGGTCGGCGTGCGAGCCCACGCGCTCCGCCTTGGC | + |
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Preference number: 6 (lower is better) Translates to: HLSSATHGPLLG*VGVRAHALRLG Trigger: GCCAAGGCGGAGCGCGTGGGCTCGCACGCCGACGCAGCCCAGGAGCGGGCCGTGCGTCGCGCTGCTCAGGTG 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS GCA 72 bp | CTCTGTATGCGACGCACGGAGCCCGCCAGGCCGCCCTaGCTCTCAGCCAGGCCGCCTTGCCGCTCCCGCAGA | + |
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Preference number: 6 (lower is better) Translates to: LCMRRTEPARPP*LSARPPCRSRR Trigger: TCTGCGGGAGCGGCAAGGCGGCCTGGCTGAGAGGCAGGGCGGCCTGGCGGGCTCCGTGCGTCGCATACAGAG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS CAA 90 bp | GCCCGCTCCTGGGCTGCGTCGGCGTGCGAGCCCACGCGCTCCGCCTaGGCCAGCAGCTGCGTCAGTGTGTTGCTGGTGGTGTCGTGGCTG | + |
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Preference number: 6 (lower is better) Translates to: ARSWAASACEPTRSA*ASSCVSVLLVVSWL Trigger: CAGCCACGACACCACCAGCAACACACTGACGCAGCTGCTGGCCAAGGCGGAGCGCGTGGGCTCGCACGCCGACGCAGCCCAGGAGCGGGC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS CCA 72 bp | CGTGCAGCTTCCCGCGCGCCACCAGCAGCCCGTGGTTaGCCTCCAACCGCTGCACCTGAGCAGCGCGACGCA | + |
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Preference number: 6 (lower is better) Translates to: RAASRAPPAARG*PPTAAPEQRDA Trigger: TGCGTCGCGCTGCTCAGGTGCAGCGGTTGGAGGCCAACCACGGGCTGCTGGTGGCGCGCGGGAAGCTGCACG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS CCA 72 bp | GGGCTGCGTCGGCGTGCGAGCCCACGCGCTCCGCCTTaGCCAGCAGCTGCGTCAGTGTGTTGCTGGTGGTGT | + |
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Preference number: 6 (lower is better) Translates to: GLRRRASPRAPP*PAAASVCCWWC Trigger: ACACCACCAGCAACACACTGACGCAGCTGCTGGCCAAGGCGGAGCGCGTGGGCTCGCACGCCGACGCAGCCC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS CAA 72 bp | TGGGCTGCGTCGGCGTGCGAGCCCACGCGCTCCGCCTaGGCCAGCAGCTGCGTCAGTGTGTTGCTGGTGGTG | + |
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Preference number: 6 (lower is better) Translates to: WAASACEPTRSA*ASSCVSVLLVV Trigger: CACCACCAGCAACACACTGACGCAGCTGCTGGCCAAGGCGGAGCGCGTGGGCTCGCACGCCGACGCAGCCCA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS CAA 90 bp | TGCGAGCCCACGCGCTCCGCCTTGGCCAGCAGCTGCGTCAGTGTGTaGCTGGTGGTGTCGTGGCTGCGACTCAGCGCACCCAGGCCACTC | + |
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Preference number: 6 (lower is better) Translates to: CEPTRSALASSCVSV*LVVSWLRLSAPRPL Trigger: GAGTGGCCTGGGTGCGCTGAGTCGCAGCCACGACACCACCAGCAACACACTGACGCAGCTGCTGGCCAAGGCGGAGCGCGTGGGCTCGCA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS GCA 72 bp | CGCGCTCCGCCTTGGCCAGCAGCTGCGTCAGTGTGTTaGTGGTGGTGTCGTGGCTGCGACTCAGCGCACCCA | + |
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Preference number: 6 (lower is better) Translates to: RAPPWPAAASVC*WWCRGCDSAHP Trigger: TGGGTGCGCTGAGTCGCAGCCACGACACCACCAGCAACACACTGACGCAGCTGCTGGCCAAGGCGGAGCGCG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS CCA 72 bp | CCGCCTTGGCCAGCAGCTGCGTCAGTGTGTTGCTGGTaGTGTCGTGGCTGCGACTCAGCGCACCCAGGCCAC | + |
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Preference number: 6 (lower is better) Translates to: PPWPAAASVCCW*CRGCDSAHPGH Trigger: GTGGCCTGGGTGCGCTGAGTCGCAGCCACGACACCACCAGCAACACACTGACGCAGCTGCTGGCCAAGGCGG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS CCA 72 bp | GCTCCGCCTTGGCCAGCAGCTGCGTCAGTGTGTTGCTaGTGGTGTCGTGGCTGCGACTCAGCGCACCCAGGC | + |
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Preference number: 6 (lower is better) Translates to: APPWPAAASVCC*WCRGCDSAHPG Trigger: GCCTGGGTGCGCTGAGTCGCAGCCACGACACCACCAGCAACACACTGACGCAGCTGCTGGCCAAGGCGGAGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS CAA 72 bp | ACGCGCTCCGCCTTGGCCAGCAGCTGCGTCAGTGTGTaGCTGGTGGTGTCGTGGCTGCGACTCAGCGCACCC | + |
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Preference number: 6 (lower is better) Translates to: TRSALASSCVSV*LVVSWLRLSAP Trigger: GGGTGCGCTGAGTCGCAGCCACGACACCACCAGCAACACACTGACGCAGCTGCTGGCCAAGGCGGAGCGCGT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS GCA 72 bp | GGTGGCCAATTTCTCCAGCAAGGTCACCACGGTGACTaGGTGCACCGGACCCCCTGCGGGCGTCTCAGGCAC | + |
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Preference number: 6 (lower is better) Translates to: GGQFLQQGHHGD*VHRTPCGRLRH Trigger: GTGCCTGAGACGCCCGCAGGGGGTCCGGTGCACGCAGTCACCGTGGTGACCTTGCTGGAGAAATTGGCCACC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS GCA 72 bp | GCCAATTTCTCCAGCAAGGTCACCACGGTGACTGCGTaGACCGGACCCCCTGCGGGCGTCTCAGGCACAGGT | + |
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Preference number: 6 (lower is better) Translates to: ANFSSKVTTVTA*TGPPAGVSGTG Trigger: ACCTGTGCCTGAGACGCCCGCAGGGGGTCCGGTGCACGCAGTCACCGTGGTGACCTTGCTGGAGAAATTGGC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS TCA 72 bp | GGACTCCATTTCAGGCTGAGCTGCAGGCTGGCCTTCTaGTGGGCCTTCAGAGCTCCGGACAGGCCCTACGCG | + |
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Preference number: 6 (lower is better) Translates to: GLHFRLSCRLAF*WAFRAPDRPYA Trigger: CGCGTAGGGCCTGTCCGGAGCTCTGAAGGCCCATCAGAAGGCCAGCCTGCAGCTCAGCCTGAAATGGAGTCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS CCA 72 bp | GCCAGCAGCTGCGTCAGTGTGTTGCTGGTGGTGTCGTaGCTGCGACTCAGCGCACCCAGGCCACTCTGTATG | + |
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Preference number: 6 (lower is better) Translates to: ASSCVSVLLVVS*LRLSAPRPLCM Trigger: CATACAGAGTGGCCTGGGTGCGCTGAGTCGCAGCCACGACACCACCAGCAACACACTGACGCAGCTGCTGGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS CAA 90 bp | TCTGGGACTTTCTGGAAGGCGCGGGCTGGAATTTCAGTCTCCTCCTaGAAGAGCAGGACGTGCAGCTTCCCGCGCGCCACCAGCAGCCCG | + |
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Preference number: 6 (lower is better) Translates to: SGTFWKARAGISVSS*KSRTCSFPRATSSP Trigger: CGGGCTGCTGGTGGCGCGCGGGAAGCTGCACGTCCTGCTCTTCAAGGAGGAGACTGAAATTCCAGCCCGCGCCTTCCAGAAAGTCCCAGA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS TCA 72 bp | TCTGGAAGGCGCGGGCTGGAATTTCAGTCTCCTCCTTaGAGAGCAGGACGTGCAGCTTCCCGCGCGCCACCA | + |
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Preference number: 6 (lower is better) Translates to: SGRRGLEFQSPP*RAGRAASRAPP Trigger: TGGTGGCGCGCGGGAAGCTGCACGTCCTGCTCTTCAAGGAGGAGACTGAAATTCCAGCCCGCGCCTTCCAGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS CCA 72 bp | AGAGCTCCGGACAGGCCCTACGCGTGGCGGCTTGACTaGTGTGGGCTGTGCTGCTTTACGACTGGAAAGAGC | + |
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Preference number: 6 (lower is better) Translates to: RAPDRPYAWRLD*CGLCCFTTGKS Trigger: GCTCTTTCCAGTCGTAAAGCAGCACAGCCCACACCAGTCAAGCCGCCACGCGTAGGGCCTGTCCGGAGCTCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS CAA 72 bp | TTCTGGAAGGCGCGGGCTGGAATTTCAGTCTCCTCCTaGAAGAGCAGGACGTGCAGCTTCCCGCGCGCCACC | + |
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Preference number: 6 (lower is better) Translates to: FWKARAGISVSS*KSRTCSFPRAT Trigger: GGTGGCGCGCGGGAAGCTGCACGTCCTGCTCTTCAAGGAGGAGACTGAAATTCCAGCCCGCGCCTTCCAGAA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS CCA 72 bp | GCCCAGCACCAACTGGTCCTCCGGACCCAAGAGCTCTaGGACTTTCTGGAAGGCGCGGGCTGGAATTTCAGT | + |
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Preference number: 6 (lower is better) Translates to: AQHQLVLRTQEL*DFLEGAGWNFS Trigger: ACTGAAATTCCAGCCCGCGCCTTCCAGAAAGTCCCAGAGCTCTTGGGTCCGGAGGACCAGTTGGTGCTGGGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS GCA 72 bp | AGGCCCTACGCGTGGCGGCTTGACTGGTGTGGGCTGTaGTGCTTTACGACTGGAAAGAGCCCTTTTCAGGCT | + |
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Preference number: 6 (lower is better) Translates to: RPYAWRLDWCGL*CFTTGKSPFQA Trigger: AGCCTGAAAAGGGCTCTTTCCAGTCGTAAAGCAGCACAGCCCACACCAGTCAAGCCGCCACGCGTAGGGCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS GCA 72 bp | CCCTACGCGTGGCGGCTTGACTGGTGTGGGCTGTGCTaGTTTACGACTGGAAAGAGCCCTTTTCAGGCTTTG | + |
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Preference number: 6 (lower is better) Translates to: PYAWRLDWCGLC*FTTGKSPFQAL Trigger: CAAAGCCTGAAAAGGGCTCTTTCCAGTCGTAAAGCAGCACAGCCCACACCAGTCAAGCCGCCACGCGTAGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS CCA 72 bp | AACTGGTCCTCCGGACCCAAGAGCTCTGGGACTTTCTaGAAGGCGCGGGCTGGAATTTCAGTCTCCTCCTTG | + |
|
Preference number: 6 (lower is better) Translates to: NWSSGPKSSGTF*KARAGISVSSL Trigger: CAAGGAGGAGACTGAAATTCCAGCCCGCGCCTTCCAGAAAGTCCCAGAGCTCTTGGGTCCGGAGGACCAGTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS CCA 72 bp | ACCCAAGAGCTCTGGGACTTTCTGGAAGGCGCGGGCTaGAATTTCAGTCTCCTCCTTGAAGAGCAGGACGTG | + |
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Preference number: 6 (lower is better) Translates to: TQELWDFLEGAG*NFSLLLEEQDV Trigger: CACGTCCTGCTCTTCAAGGAGGAGACTGAAATTCCAGCCCGCGCCTTCCAGAAAGTCCCAGAGCTCTTGGGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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| CDS CAA 90 bp | GCTCTCTATTTGAAGCACGGGTTTCTCAGGATCTTCCTTGGTAGGTaGAGGAGGTTCTGGCTCCAGGGCAGTCTCGAGCTCGGACTCCAT | + |
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Preference number: 6 (lower is better) Translates to: ALYLKHGFLRIFLGR*RRFWLQGSLELGLH Trigger: ATGGAGTCCGAGCTCGAGACTGCCCTGGAGCCAGAACCTCCTCAACCTACCAAGGAAGATCCTGAGAAACCCGTGCTTCAAATAGAGAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047040.4 |
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