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Pregenerated sensors for CAVIN1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000004044

Ensembl transcript IDs: ENSMUST00000060792.6

Found 140 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TTGCTCATGCTGGCTTTGAGCTCACTCTGCAGCCCAGGCAGGCCTTaGACTTACAAGTCTCCTGCCTCAGCCTCTCTGGGAGAGCAAGCT +
Preference number: 1 (lower is better)
Translates to: LLMLALSSLCSPGRP*TYKSPASASLGEQA
Trigger: AGCTTGCTCTCCCAGAGAGGCTGAGGCAGGAGACTTGTAAGTTCAAGGCCTGCCTGGGCTGCAGAGTGAGCTCAAAGCCAGCATGAGCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR CCA 90 bp ATTAGAGAAAGATCCATGGTAGAAGCAGCTGAGAGGGAGTTAGGGTaGGCAAGCCAGCTGGCCCTGCTGCTCCAGCTTCCAGCTAGGGAG +
Preference number: 1 (lower is better)
Translates to: IRERSMVEAAERELG*ASQLALLLQLPARE
Trigger: CTCCCTAGCTGGAAGCTGGAGCAGCAGGGCCAGCTGGCTTGCCCACCCTAACTCCCTCTCAGCTGCTTCTACCATGGATCTTTCTCTAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR CCA 90 bp CCTACCACCCTTTCCCAGGCTCTACCCGCCTTCTGCTTATTTTGGTaGGGCCTTTATCCACCAAACACTCTGCCTTTTACCTCACCCTAT +
Preference number: 1 (lower is better)
Translates to: PTTLSQALPAFCLFW*GLYPPNTLPFTSPY
Trigger: ATAGGGTGAGGTAAAAGGCAGAGTGTTTGGTGGATAAAGGCCCCACCAAAATAAGCAGAAGGCGGGTAGAGCCTGGGAAAGGGTGGTAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR GCA 90 bp AAGCTGCCCCTACAAGGGTTGTCTTTAGGATTTGCTCTTTCCTCTTaGAGAAATTTGGGCTTTGGAGTCTCCCAGGGTGAGGAAAAGGAG +
Preference number: 1 (lower is better)
Translates to: KLPLQGLSLGFALSS*RNLGFGVSQGEEKE
Trigger: CTCCTTTTCCTCACCCTGGGAGACTCCAAAGCCCAAATTTCTGCAAGAGGAAAGAGCAAATCCTAAAGACAACCCTTGTAGGGGCAGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR CCA 90 bp TTCCTAGATTCTGGAAGAGAGAATCCAATCAGGCTGACGTCTCTTTaGAACACACTTTCTAAAACTGACTTCCCTCCTGACCCGGAAGCT +
Preference number: 1 (lower is better)
Translates to: FLDSGRENPIRLTSL*NTLSKTDFPPDPEA
Trigger: AGCTTCCGGGTCAGGAGGGAAGTCAGTTTTAGAAAGTGTGTTCCAAAGAGACGTCAGCCTGATTGGATTCTCTCTTCCAGAATCTAGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR CCA 90 bp TTTCAGGTAAAGGGGGCCCCAAAGGCAAGGAACACAGGAGGGTCTTaGCAAGCTCTAAAGTTTCACATTAGAGAAAGATCCATGGTAGAA +
Preference number: 1 (lower is better)
Translates to: FQVKGAPKARNTGGS*QALKFHIRERSMVE
Trigger: TTCTACCATGGATCTTTCTCTAATGTGAAACTTTAGAGCTTGCCAAGACCCTCCTGTGTTCCTTGCCTTTGGGGCCCCCTTTACCTGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR CAA 90 bp CTGCTGCTCCAGCTTCCAGCTAGGGAGCTCAGCTCCAGAGGCACCTaGCTTTCCCCAGCTGCCAGTTCTCCACAACTCGCTGCTGCCCCC +
Preference number: 2 (lower is better)
Translates to: LLLQLPARELSSRGT*LSPAASSPQLAAAP
Trigger: GGGGGCAGCAGCGAGTTGTGGAGAACTGGCAGCTGGGGAAAGCAAGGTGCCTCTGGAGCTGAGCTCCCTAGCTGGAAGCTGGAGCAGCAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR-3UTR TCA 90 bp AGCTTCCAGCTAGGGAGCTCAGCTCCAGAGGCACCTTGCTTTCCCCAGCTGCCATGGAGTCTCCCAGGGTaGGGAAAAGGAGAAACAGCT +
Preference number: 2 (lower is better)
Translates to: SFQLGSSAPEAPCFPQLPWSLPG*GKGETA
Trigger: AGCTGTTTCTCCTTTTCCTCACCCTGGGAGACTCCA...TGGCAGCTGGGGAAAGCAAGGTGCCTCTGGAGCTGAGCTCCCTAGCTGGAAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR CAA 90 bp ATTGCTCATGCTGGCTTTGAGCTCACTCTGCAGCCCAGGCAGGCCTaGAACTTACAAGTCTCCTGCCTCAGCCTCTCTGGGAGAGCAAGC +
Preference number: 2 (lower is better)
Translates to: IAHAGFELTLQPRQA*NLQVSCLSLSGRAS
Trigger: GCTTGCTCTCCCAGAGAGGCTGAGGCAGGAGACTTGTAAGTTCAAGGCCTGCCTGGGCTGCAGAGTGAGCTCAAAGCCAGCATGAGCAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR-3UTR TCA 90 bp CTCAGGTCTTCCAGTGGGCCACCTCTGGGCAAAGGTCTCTCTACACACATTTTAAGCCCAGGCAGGCCTTaGACTTACAAGTCTCCTGCC +
Preference number: 2 (lower is better)
Translates to: LRSSSGPPLGKGLSTHILSPGRP*TYKSPA
Trigger: GGCAGGAGACTTGTAAGTTCAAGGCCTGCCTGGGCT...TAAAATGTGTGTAGAGAGACCTTTGCCCAGAGGTGGCCCACTGGAAGACCTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR-3UTR CCA 90 bp CCCGGAAGGCAGTTCCTAGATTCTGGAAGAGAGAATCCAATCAGGCTGACGTCTCCAGTGGGCCACCTCTaGGCAAAGGTCTCTCTACAC +
Preference number: 2 (lower is better)
Translates to: PGRQFLDSGRENPIRLTSPVGHL*AKVSLH
Trigger: GTGTAGAGAGACCTTTGCCCAGAGGTGGCCCACTGG...AGACGTCAGCCTGATTGGATTCTCTCTTCCAGAATCTAGGAACTGCCTTCCGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR-3UTR GCA 90 bp AATCAAGCCTTGGACATGAAGCAGCACCCCACTCTCCCCAACTTTCAGGTAAAGCTCGCTGCTGCCCCCTaGTGGAACCCTAATTTTCCG +
Preference number: 2 (lower is better)
Translates to: NQALDMKQHPTLPNFQVKLAAAP*WNPNFP
Trigger: CGGAAAATTAGGGTTCCAGCAGGGGGCAGCAGCGAG...CTTTACCTGAAAGTTGGGGAGAGTGGGGTGCTGCTTCATGTCCAAGGCTTGATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR-3UTR GCA 90 bp AAGTTTCACATTAGAGAAAGATCCATGGTAGAAGCAGCTGAGAGGGAGTTAGGGGCCAGCTGGCCCTGCTaGTCCAGCTTCCAGCTAGGG +
Preference number: 2 (lower is better)
Translates to: KFHIRERSMVEAAERELGASWPC*SSFQLG
Trigger: CCCTAGCTGGAAGCTGGAGCAGCAGGGCCAGCTGGC...CCCTAACTCCCTCTCAGCTGCTTCTACCATGGATCTTTCTCTAATGTGAAACTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR-3UTR CCA 90 bp CACTTACCCACCCTCCTCAGCTTCTCCGTCTCCAAGCATTCAGAGGAGGGAAGGCTAATTTTCCGGGCATaGAAAACAAGGCTTCCCGGA +
Preference number: 2 (lower is better)
Translates to: HLPTLLSFSVSKHSEEGRLIFRA*KTRLPG
Trigger: TCCGGGAAGCCTTGTTTTCCATGCCCGGAAAATTAG...CCTTCCCTCCTCTGAATGCTTGGAGACGGAGAAGCTGAGGAGGGTGGGTAAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR CAA 90 bp GATACACCCCCACCACCTCTTATTTTGAAACTGCATCTGGCTAAATaGCTCATGCTGGCTTTGAGCTCACTCTGCAGCCCAGGCAGGCCT +
Preference number: 2 (lower is better)
Translates to: DTPPPPLILKLHLAK*LMLALSSLCSPGRP
Trigger: AGGCCTGCCTGGGCTGCAGAGTGAGCTCAAAGCCAGCATGAGCAATTTAGCCAGATGCAGTTTCAAAATAAGAGGTGGTGGGGGTGTATC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR-3UTR TCA 90 bp AATCAAGCCTTGGACATGAAGCAGCACCCCACTCTCCCCAACTTTCAGGTAAAGCAAGGGCTCTATCAGTaGTACACCCCCACCACCTCT +
Preference number: 2 (lower is better)
Translates to: NQALDMKQHPTLPNFQVKQGLYQ*YTPTTS
Trigger: AGAGGTGGTGGGGGTGTATCACTGATAGAGCCCTTG...CTTTACCTGAAAGTTGGGGAGAGTGGGGTGCTGCTTCATGTCCAAGGCTTGATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR-3UTR CCA 90 bp TTTCACATTAGAGAAAGATCCATGGTAGAAGCAGCTGAGAGGGAGTTAGGGTGGCCTCAGGTCTTCCAGTaGGCCACCTCTGGGCAAAGG +
Preference number: 2 (lower is better)
Translates to: FHIRERSMVEAAERELGWPQVFQ*ATSGQR
Trigger: CCTTTGCCCAGAGGTGGCCCACTGGAAGACCTGAGG...CCACCCTAACTCCCTCTCAGCTGCTTCTACCATGGATCTTTCTCTAATGTGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR CAA 90 bp GGTGAGGAGAAGGAAGTAGCCTGTAGCTATCAATTGGGGGAGGTGTaGCCTGCTCCTGATCAGCCATTAAAGGGGGAACAAATGTGTCCT +
Preference number: 2 (lower is better)
Translates to: GEEKEVACSYQLGEV*PAPDQPLKGEQMCP
Trigger: AGGACACATTTGTTCCCCCTTTAATGGCTGATCAGGAGCAGGCAACACCTCCCCCAATTGATAGCTACAGGCTACTTCCTTCTCCTCACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR-3UTR GCA 90 bp CCCGGAAGGCAGTTCCTAGATTCTGGAAGAGAGAATCCAATCAGGCTGACGTCTCTGGCACTAGAAAGCTaGCCCTACAAGGGTTGTCTT +
Preference number: 2 (lower is better)
Translates to: PGRQFLDSGRENPIRLTSLALES*PYKGCL
Trigger: AAGACAACCCTTGTAGGGGCAGCTTTCTAGTGCCAG...AGACGTCAGCCTGATTGGATTCTCTCTTCCAGAATCTAGGAACTGCCTTCCGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR-3UTR GCA 90 bp TCTCTTTGGAACACACTTTCTAAAACTGACTTCCCTCCTGACCCGGAAGCTGCCAACTTACAAGTCTCCTaGCTCAGCCTCTCTGGGAGA +
Preference number: 2 (lower is better)
Translates to: SLWNTLSKTDFPPDPEAANLQVS*LSLSGR
Trigger: TCTCCCAGAGAGGCTGAGGCAGGAGACTTGTAAGTT...GGCAGCTTCCGGGTCAGGAGGGAAGTCAGTTTTAGAAAGTGTGTTCCAAAGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR-3UTR CCA 90 bp CACTTACCCACCCTCCTCAGCTTCTCCGTCTCCAAGCATTCAGAGGAGGGAAGGAGGCTGACGTCTCTTTaGAACACACTTTCTAAAACT +
Preference number: 2 (lower is better)
Translates to: HLPTLLSFSVSKHSEEGRRLTSL*NTLSKT
Trigger: AGTTTTAGAAAGTGTGTTCCAAAGAGACGTCAGCCT...CCTTCCCTCCTCTGAATGCTTGGAGACGGAGAAGCTGAGGAGGGTGGGTAAGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR-3UTR CCA 90 bp TCAGTAACTATAAGAAATCAAGCCTTGGACATGAAGCAGCACCCCACTCTCCCCCCTCTTGCAGAAATTTaGGCTTTGGAGTCTCCCAGG +
Preference number: 2 (lower is better)
Translates to: SVTIRNQALDMKQHPTLPPLAEI*ALESPR
Trigger: CCTGGGAGACTCCAAAGCCCAAATTTCTGCAAGAGG...GGGGAGAGTGGGGTGCTGCTTCATGTCCAAGGCTTGATTTCTTATAGTTACTGA
49% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR-3UTR TCA 90 bp ACAACCAGGGCATGGGTCATTCTTCCCATATCCTACCCAGACTGTGTCCAAATTGCAAAAGAGAAAGTTTaGAAAGGGAAAGGCGGTGTG +
Preference number: 2 (lower is better)
Translates to: TTRAWVILPISYPDCVQIAKEKV*KGKGGV
Trigger: CACACCGCCTTTCCCTTTTCAAACTTTCTCTTTTGC...AATTTGGACACAGTCTGGGTAGGATATGGGAAGAATGACCCATGCCCTGGTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR-3UTR TCA 90 bp ATTAAAGGGGGAACAAATGTGTCCTTAGGAGAAAACCTGGTCAGTAACTATAAGTGCTCATGCTGGCTTTaGGCTCACTCTGCAGCCCAG +
Preference number: 2 (lower is better)
Translates to: IKGGTNVSLGENLVSNYKCSCWL*AHSAAQ
Trigger: CTGGGCTGCAGAGTGAGCTCAAAGCCAGCATGAGCA...CTTATAGTTACTGACCAGGTTTTCTCCTAAGGACACATTTGTTCCCCCTTTAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR-3UTR CCA 90 bp AATCAAGCCTTGGACATGAAGCAGCACCCCACTCTCCCCAACTTTCAGGTAAAGGCAGTTCCTAGATTCTaGAAGAGAGAATCCAATCAG +
Preference number: 2 (lower is better)
Translates to: NQALDMKQHPTLPNFQVKAVPRF*KRESNQ
Trigger: CTGATTGGATTCTCTCTTCCAGAATCTAGGAACTGC...CTTTACCTGAAAGTTGGGGAGAGTGGGGTGCTGCTTCATGTCCAAGGCTTGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR-3UTR CCA 90 bp TCAGTAACTATAAGAAATCAAGCCTTGGACATGAAGCAGCACCCCACTCTCCCCAAAATAAAAGCATCCTaGATCAAGACAACCAGGGCA +
Preference number: 2 (lower is better)
Translates to: SVTIRNQALDMKQHPTLPKIKAS*IKTTRA
Trigger: TGCCCTGGTTGTCTTGATCCAGGATGCTTTTATTTT...GGGGAGAGTGGGGTGCTGCTTCATGTCCAAGGCTTGATTTCTTATAGTTACTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR GCA 72 bp GGAGCTCAGCTCCAGAGGCACCTTGCTTTCCCCAGCTaGCAGTTCTCCACAACTCGCTGCTGCCCCCTGCTG +
Preference number: 3 (lower is better)
Translates to: GAQLQRHLAFPS*QFSTTRCCPLL
Trigger: CAGCAGGGGGCAGCAGCGAGTTGTGGAGAACTGGCAGCTGGGGAAAGCAAGGTGCCTCTGGAGCTGAGCTCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR-3UTR CAA 90 bp AACACAGCAACTCAAGGGACTCCCCTAGAGCCCACAGGAAACTGCATCTGCCCATTGCTCATGCTGGCTTaGAGCTCACTCTGCAGCCCA +
Preference number: 3 (lower is better)
Translates to: NTATQGTPLEPTGNCICPLLMLA*SSLCSP
Trigger: TGGGCTGCAGAGTGAGCTCAAAGCCAGCATGAGCAA...TGGGCAGATGCAGTTTCCTGTGGGCTCTAGGGGAGTCCCTTGAGTTGCTGTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR CCA 72 bp TGCCTTAGTTCCCCCAAAGACCCTCAGGTCTTCCAGTaGGCCACCTCTGGGCAAAGGTCTCTCTACACACAT +
Preference number: 3 (lower is better)
Translates to: CLSSPKDPQVFQ*ATSGQRSLYTH
Trigger: ATGTGTGTAGAGAGACCTTTGCCCAGAGGTGGCCCACTGGAAGACCTGAGGGTCTTTGGGGGAACTAAGGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR-3UTR CAA 90 bp CACTTACCCACCCTCCTCAGCTTCTCCGTCTCCAAGCATTCAGAGGAGGGAAGGCTGCATCTGGCTAAATaGCTCATGCTGGCTTTGAGC +
Preference number: 3 (lower is better)
Translates to: HLPTLLSFSVSKHSEEGRLHLAK*LMLALS
Trigger: GCTCAAAGCCAGCATGAGCAATTTAGCCAGATGCAG...CCTTCCCTCCTCTGAATGCTTGGAGACGGAGAAGCTGAGGAGGGTGGGTAAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR-3UTR CAA 90 bp CACTTACCCACCCTCCTCAGCTTCTCCGTCTCCAAGCATTCAGAGGAGGGAAGGCTGCCCCTACAAGGGTaGTCTTTAGGATTTGCTCTT +
Preference number: 3 (lower is better)
Translates to: HLPTLLSFSVSKHSEEGRLPLQG*SLGFAL
Trigger: AAGAGCAAATCCTAAAGACAACCCTTGTAGGGGCAG...CCTTCCCTCCTCTGAATGCTTGGAGACGGAGAAGCTGAGGAGGGTGGGTAAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR-3UTR CAA 90 bp TCAGTAACTATAAGAAATCAAGCCTTGGACATGAAGCAGCACCCCACTCTCCCCAGCTCCAGAGGCACCTaGCTTTCCCCAGCTGCCAGT +
Preference number: 3 (lower is better)
Translates to: SVTIRNQALDMKQHPTLPSSRGT*LSPAAS
Trigger: ACTGGCAGCTGGGGAAAGCAAGGTGCCTCTGGAGCT...GGGGAGAGTGGGGTGCTGCTTCATGTCCAAGGCTTGATTTCTTATAGTTACTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR GCA 72 bp ACACCTACCACCCTTTCCCAGGCTCTACCCGCCTTCTaGTTATTTTGGTGGGGCCTTTATCCACCAAACACT +
Preference number: 3 (lower is better)
Translates to: TPTTLSQALPAF*LFWWGLYPPNT
Trigger: AGTGTTTGGTGGATAAAGGCCCCACCAAAATAAGCAGAAGGCGGGTAGAGCCTGGGAAAGGGTGGTAGGTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR-3UTR CAA 90 bp TCTCTTTGGAACACACTTTCTAAAACTGACTTCCCTCCTGACCCGGAAGCTGCCGCAGAAATTTGGGCTTaGGAGTCTCCCAGGGTGAGG +
Preference number: 3 (lower is better)
Translates to: SLWNTLSKTDFPPDPEAAAEIWA*ESPRVR
Trigger: CCTCACCCTGGGAGACTCCAAAGCCCAAATTTCTGC...GGCAGCTTCCGGGTCAGGAGGGAAGTCAGTTTTAGAAAGTGTGTTCCAAAGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR TCA 72 bp GACTTCCCTCCTGACCCGGAAGCTGCCCTGCTGTCTTaGGATCCTACCAAAGTGGGACTCTTGAATTTCTTT +
Preference number: 3 (lower is better)
Translates to: DFPPDPEAALLS*DPTKVGLLNFF
Trigger: AAAGAAATTCAAGAGTCCCACTTTGGTAGGATCTCAAGACAGCAGGGCAGCTTCCGGGTCAGGAGGGAAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR CCA 72 bp CTTTCCCAGGCTCTACCCGCCTTCTGCTTATTTTGGTaGGGCCTTTATCCACCAAACACTCTGCCTTTTACC +
Preference number: 3 (lower is better)
Translates to: LSQALPAFCLFW*GLYPPNTLPFT
Trigger: GGTAAAAGGCAGAGTGTTTGGTGGATAAAGGCCCCACCAAAATAAGCAGAAGGCGGGTAGAGCCTGGGAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR GCA 72 bp TATCCACCAAACACTCTGCCTTTTACCTCACCCTATTaGCTTAGTTCCCCCAAAGACCCTCAGGTCTTCCAG +
Preference number: 3 (lower is better)
Translates to: YPPNTLPFTSPY*LSSPKDPQVFQ
Trigger: CTGGAAGACCTGAGGGTCTTTGGGGGAACTAAGGCAATAGGGTGAGGTAAAAGGCAGAGTGTTTGGTGGATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR CCA 72 bp AAGGGGGCCCCAAAGGCAAGGAACACAGGAGGGTCTTaGCAAGCTCTAAAGTTTCACATTAGAGAAAGATCC +
Preference number: 3 (lower is better)
Translates to: KGAPKARNTGGS*QALKFHIRERS
Trigger: GGATCTTTCTCTAATGTGAAACTTTAGAGCTTGCCAAGACCCTCCTGTGTTCCTTGCCTTTGGGGCCCCCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR-3UTR CAA 90 bp ATTAAAGGGGGAACAAATGTGTCCTTAGGAGAAAACCTGGTCAGTAACTATAAGTCTAAGGCCTGTGCTTaGGAGGGCTGCTCTTCGGGG +
Preference number: 3 (lower is better)
Translates to: IKGGTNVSLGENLVSNYKSKACA*EGCSSG
Trigger: CCCCGAAGAGCAGCCCTCCAAAGCACAGGCCTTAGA...CTTATAGTTACTGACCAGGTTTTCTCCTAAGGACACATTTGTTCCCCCTTTAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR-3UTR CAA 90 bp AATCAAGCCTTGGACATGAAGCAGCACCCCACTCTCCCCAACTTTCAGGTAAAGATTTGCTCTTTCCTCTaGCAGAAATTTGGGCTTTGG +
Preference number: 3 (lower is better)
Translates to: NQALDMKQHPTLPNFQVKICSFL*QKFGLW
Trigger: CCAAAGCCCAAATTTCTGCAAGAGGAAAGAGCAAAT...CTTTACCTGAAAGTTGGGGAGAGTGGGGTGCTGCTTCATGTCCAAGGCTTGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR-3UTR CAA 90 bp TCTCTTTGGAACACACTTTCTAAAACTGACTTCCCTCCTGACCCGGAAGCTGCCCCACCACCTCTTATTTaGAAACTGCATCTGGCTAAA +
Preference number: 3 (lower is better)
Translates to: SLWNTLSKTDFPPDPEAAPPPLI*KLHLAK
Trigger: TTTAGCCAGATGCAGTTTCAAAATAAGAGGTGGTGG...GGCAGCTTCCGGGTCAGGAGGGAAGTCAGTTTTAGAAAGTGTGTTCCAAAGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR-3UTR CAA 90 bp CCCGGAAGGCAGTTCCTAGATTCTGGAAGAGAGAATCCAATCAGGCTGACGTCTACCAAAGTGGGACTCTaGAATTTCTTTGTGTTGTTA +
Preference number: 3 (lower is better)
Translates to: PGRQFLDSGRENPIRLTSTKVGL*NFFVLL
Trigger: TAACAACACAAAGAAATTCAAGAGTCCCACTTTGGT...AGACGTCAGCCTGATTGGATTCTCTCTTCCAGAATCTAGGAACTGCCTTCCGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR GCA 72 bp CTCTCTCTTTCCAAAGAATACTCACGTGCTCCTGTGTaGAGGTTTTGTAGCTTTGTAAATAAGCCCCTCTCC +
Preference number: 3 (lower is better)
Translates to: LSLSKEYSRAPV*RFCSFVNKPLS
Trigger: GGAGAGGGGCTTATTTACAAAGCTACAAAACCTGCACACAGGAGCACGTGAGTATTCTTTGGAAAGAGAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR CCA 72 bp AAAATAAAAGCATCCTGGATCAAGACAACCAGGGCATaGGTCATTCTTCCCATATCCTACCCAGACTGTGTC +
Preference number: 3 (lower is better)
Translates to: KIKASWIKTTRA*VILPISYPDCV
Trigger: GACACAGTCTGGGTAGGATATGGGAAGAATGACCCATGCCCTGGTTGTCTTGATCCAGGATGCTTTTATTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR CCA 72 bp TCTGGAAGAGAGAATCCAATCAGGCTGACGTCTCTTTaGAACACACTTTCTAAAACTGACTTCCCTCCTGAC +
Preference number: 3 (lower is better)
Translates to: SGRENPIRLTSL*NTLSKTDFPPD
Trigger: GTCAGGAGGGAAGTCAGTTTTAGAAAGTGTGTTCCAAAGAGACGTCAGCCTGATTGGATTCTCTCTTCCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR TCA 90 bp GAAGCAGCTGAGAGGGAGTTAGGGTGGGCAAGCCAGCTGGCCCTGCTGCTCCAGCGTCCGACTCCTCGGTaGTCTCCAGCAGCGTGTGCA +
Preference number: 4 (lower is better)
Translates to: EAAERELGWASQLALLLQRPTPR*SPAACA
Trigger: TGCACACGCTGCTGGAGATCACCGAGGAGTCGGACG...CTGGAGCAGCAGGGCCAGCTGGCTTGCCCACCCTAACTCCCTCTCAGCTGCTTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR TCA 90 bp GAAGCAGCTGAGAGGGAGTTAGGGTGGGCAAGCCAGCTGGCCCTGCTGCTCCAGCCACATGGTCGGGCGTaGAGGACTTGCGCAGCTTGT +
Preference number: 4 (lower is better)
Translates to: EAAERELGWASQLALLLQPHGRA*RTCAAC
Trigger: ACAAGCTGCGCAAGTCCTTCACGCCCGACCATGTGG...CTGGAGCAGCAGGGCCAGCTGGCTTGCCCACCCTAACTCCCTCTCAGCTGCTTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR GCA 90 bp AGCTTCCAGCTAGGGAGCTCAGCTCCAGAGGCACCTTGCTTTCCCCAGCTGCCAACTTGCTCACGGTGTTaGTCGTGGTGGCGTGCGCCT +
Preference number: 4 (lower is better)
Translates to: SFQLGSSAPEAPCFPQLPTCSRC*SWWRAP
Trigger: AGGCGCACGCCACCACGAGCAACACCGTGAGCAAGT...TGGCAGCTGGGGAAAGCAAGGTGCCTCTGGAGCTGAGCTCCCTAGCTGGAAGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR CAA 72 bp CAGCTTCCAGCTAGGGAGCTCAGCTCCAGAGGCACCTaGCTTTCCCCAGCTGCCAGTTCTCCACAACTCGCT +
Preference number: 4 (lower is better)
Translates to: QLPARELSSRGT*LSPAASSPQLA
Trigger: AGCGAGTTGTGGAGAACTGGCAGCTGGGGAAAGCAAGGTGCCTCTGGAGCTGAGCTCCCTAGCTGGAAGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR TCA 90 bp TCAGTAACTATAAGAAATCAAGCCTTGGACATGAAGCAGCACCCCACTCTCCCCGCAGGCCGCTGCGCTTaGTGCGCTCGGCGCGGGACT +
Preference number: 4 (lower is better)
Translates to: SVTIRNQALDMKQHPTLPAGRCA*CARRGT
Trigger: AGTCCCGCGCCGAGCGCATCAAGCGCAGCGGCCTGC...GGGGAGAGTGGGGTGCTGCTTCATGTCCAAGGCTTGATTTCTTATAGTTACTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR GCA 90 bp AACACAGCAACTCAAGGGACTCCCCTAGAGCCCACAGGAAACTGCATCTGCCCATTGCTCGTGGTGGCGTaGGCCTTGCCCAGCTTGCTC +
Preference number: 4 (lower is better)
Translates to: NTATQGTPLEPTGNCICPLLVVA*ALPSLL
Trigger: GAGCAAGCTGGGCAAGGCGCACGCCACCACGAGCAA...TGGGCAGATGCAGTTTCCTGTGGGCTCTAGGGGAGTCCCTTGAGTTGCTGTGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR GCA 90 bp CTAAAACTGACTTCCCTCCTGACCCGGAAGCTGCCCTGCTGTCTTGAGATCCTATGGTGGCGTGCGCCTTaGCCAGCTTGCTCAGCTCTC +
Preference number: 4 (lower is better)
Translates to: LKLTSLLTRKLPCCLEILWWRAP*PACSAL
Trigger: GAGAGCTGAGCAAGCTGGGCAAGGCGCACGCCACCA...TAGGATCTCAAGACAGCAGGGCAGCTTCCGGGTCAGGAGGGAAGTCAGTTTTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR GCA 90 bp ACAAGGCTTCCCGGAAGGCAGTTCCTAGATTCTGGAAGAGAGAATCCAATCAGGTGTGCACGTCGGGGCTaGTCCCGCGCAGCAGGTCAG +
Preference number: 4 (lower is better)
Translates to: TRLPGRQFLDSGRENPIRCARRG*SRAAGQ
Trigger: CTGACCTGCTGCGCGGGAGCAGCCCCGACGTGCACA...CCTGATTGGATTCTCTCTTCCAGAATCTAGGAACTGCCTTCCGGGAAGCCTTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR GCA 90 bp ACAACCAGGGCATGGGTCATTCTTCCCATATCCTACCCAGACTGTGTCCAAATTCCTGGCGCTCCAGGCTaGCGCGCACGGTCTTCACGT +
Preference number: 4 (lower is better)
Translates to: TTRAWVILPISYPDCVQIPGAPG*RARSSR
Trigger: ACGTGAAGACCGTGCGCGGCAGCCTGGAGCGCCAGG...AATTTGGACACAGTCTGGGTAGGATATGGGAAGAATGACCCATGCCCTGGTTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR GCA 90 bp CACTTACCCACCCTCCTCAGCTTCTCCGTCTCCAAGCATTCAGAGGAGGGAAGGCTCCTTCTCAGGCAGTaGCTCCGACTCTTTCAGCGA +
Preference number: 4 (lower is better)
Translates to: HLPTLLSFSVSKHSEEGRLLLRQ*LRLFQR
Trigger: TCGCTGAAAGAGTCGGAGGCACTGCCTGAGAAGGAG...CCTTCCCTCCTCTGAATGCTTGGAGACGGAGAAGCTGAGGAGGGTGGGTAAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR CCA 90 bp CACCCTATTGCCTTAGTTCCCCCAAAGACCCTCAGGTCTTCCAGTGGGCCACCTAGCACACCGTTCACCTaGTCCGACTTGATCAGCTCG +
Preference number: 4 (lower is better)
Translates to: HPIALVPPKTLRSSSGPPSTPFT*SDLISS
Trigger: CGAGCTGATCAAGTCGGACCAGGTGAACGGTGTGCT...AGGTGGCCCACTGGAAGACCTGAGGGTCTTTGGGGGAACTAAGGCAATAGGGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR CCA 90 bp AATCAAGCCTTGGACATGAAGCAGCACCCCACTCTCCCCAACTTTCAGGTAAAGCGGTGTTGCTCGTGGTaGCGTGCGCCTTGCCCAGCT +
Preference number: 4 (lower is better)
Translates to: NQALDMKQHPTLPNFQVKRCCSW*RAPCPA
Trigger: AGCTGGGCAAGGCGCACGCCACCACGAGCAACACCG...CTTTACCTGAAAGTTGGGGAGAGTGGGGTGCTGCTTCATGTCCAAGGCTTGATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR GCA 90 bp ACAACCAGGGCATGGGTCATTCTTCCCATATCCTACCCAGACTGTGTCCAAATTATCTCCAGCAGCGTGTaGACGTCGGGGCTGCTCCCG +
Preference number: 4 (lower is better)
Translates to: TTRAWVILPISYPDCVQIISSSV*TSGLLP
Trigger: CGGGAGCAGCCCCGACGTGCACACGCTGCTGGAGAT...AATTTGGACACAGTCTGGGTAGGATATGGGAAGAATGACCCATGCCCTGGTTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR CCA 90 bp CTAAAACTGACTTCCCTCCTGACCCGGAAGCTGCCCTGCTGTCTTGAGATCCTATCCTCCAGCTGGGCTTaGGTCAGCTGGATCTGGTCA +
Preference number: 4 (lower is better)
Translates to: LKLTSLLTRKLPCCLEILSSSWA*VSWIWS
Trigger: TGACCAGATCCAGCTGACCCAAGCCCAGCTGGAGGA...TAGGATCTCAAGACAGCAGGGCAGCTTCCGGGTCAGGAGGGAAGTCAGTTTTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR CCA 90 bp ACACTCTGCCTTTTACCTCACCCTATTGCCTTAGTTCCCCCAAAGACCCTCAGGTGTCGCTCCTCCAGCTaGGCTTGGGTCAGCTGGATC +
Preference number: 4 (lower is better)
Translates to: TLCLLPHPIALVPPKTLRCRSSS*AWVSWI
Trigger: GATCCAGCTGACCCAAGCCCAGCTGGAGGAGCGACA...CCTGAGGGTCTTTGGGGGAACTAAGGCAATAGGGTGAGGTAAAAGGCAGAGTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR CCA 90 bp CTCAGGTCTTCCAGTGGGCCACCTCTGGGCAAAGGTCTCTCTACACACATTTTATTGCTCAGCTCTCCCTaGATGCTCTGCACAGCGCCC +
Preference number: 4 (lower is better)
Translates to: LRSSSGPPLGKGLSTHILLLSSP*MLCTAP
Trigger: GGGCGCTGTGCAGAGCATCCAGGGAGAGCTGAGCAA...TAAAATGTGTGTAGAGAGACCTTTGCCCAGAGGTGGCCCACTGGAAGACCTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR TCA 90 bp TCAGTAACTATAAGAAATCAAGCCTTGGACATGAAGCAGCACCCCACTCTCCCCTCACCTGGTCCGACTTaGTCAGCTCGTCGGAGCCGG +
Preference number: 4 (lower is better)
Translates to: SVTIRNQALDMKQHPTLPSPGPT*SARRSR
Trigger: CCGGCTCCGACGAGCTGATCAAGTCGGACCAGGTGA...GGGGAGAGTGGGGTGCTGCTTCATGTCCAAGGCTTGATTTCTTATAGTTACTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR GCA 90 bp CCCGGAAGGCAGTTCCTAGATTCTGGAAGAGAGAATCCAATCAGGCTGACGTCTTGCCCAGCTTGTTCATaGGCTTCTCCAGCGTGTGCC +
Preference number: 4 (lower is better)
Translates to: PGRQFLDSGRENPIRLTSCPACS*ASPACA
Trigger: GGCACACGCTGGAGAAGCGCATGAACAAGCTGGGCA...AGACGTCAGCCTGATTGGATTCTCTCTTCCAGAATCTAGGAACTGCCTTCCGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR CCA 90 bp CTAAAACTGACTTCCCTCCTGACCCGGAAGCTGCCCTGCTGTCTTGAGATCCTATGGGTCAGCTGGATCTaGTCAACGGCGCCGATGATT +
Preference number: 4 (lower is better)
Translates to: LKLTSLLTRKLPCCLEILWVSWI*STAPMI
Trigger: AATCATCGGCGCCGTTGACCAGATCCAGCTGACCCA...TAGGATCTCAAGACAGCAGGGCAGCTTCCGGGTCAGGAGGGAAGTCAGTTTTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR CCA 90 bp ACAACCAGGGCATGGGTCATTCTTCCCATATCCTACCCAGACTGTGTCCAAATTTCACGGTGTTGCTCGTaGTGGCGTGCGCCTTGCCCA +
Preference number: 4 (lower is better)
Translates to: TTRAWVILPISYPDCVQISRCCS*WRAPCP
Trigger: TGGGCAAGGCGCACGCCACCACGAGCAACACCGTGA...AATTTGGACACAGTCTGGGTAGGATATGGGAAGAATGACCCATGCCCTGGTTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR CAA 72 bp TCATTCTTCCCATATCCTACCCAGACTGTGTCCAAATaGAGGCTGTCGCTGGTGAGAGACCACCTCCCCTCG +
Preference number: 4 (lower is better)
Translates to: SFFPYPTQTVSK*RLSLVRDHLPS
Trigger: CGAGGGGAGGTGGTCTCTCACCAGCGACAGCCTCAATTTGGACACAGTCTGGGTAGGATATGGGAAGAATGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR GCA 90 bp ACAACCAGGGCATGGGTCATTCTTCCCATATCCTACCCAGACTGTGTCCAAATTTCTCCCTGGATGCTCTaGACAGCGCCCTCCATCTCC +
Preference number: 4 (lower is better)
Translates to: TTRAWVILPISYPDCVQISPWML*TAPSIS
Trigger: GGAGATGGAGGGCGCTGTGCAGAGCATCCAGGGAGA...AATTTGGACACAGTCTGGGTAGGATATGGGAAGAATGACCCATGCCCTGGTTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR CCA 90 bp ACAAGGCTTCCCGGAAGGCAGTTCCTAGATTCTGGAAGAGAGAATCCAATCAGGCGCGCATACACCACATaGTCGGGCGTGAAGGACTTG +
Preference number: 4 (lower is better)
Translates to: TRLPGRQFLDSGRENPIRRAYTT*SGVKDL
Trigger: CAAGTCCTTCACGCCCGACCATGTGGTGTATGCGCG...CCTGATTGGATTCTCTCTTCCAGAATCTAGGAACTGCCTTCCGGGAAGCCTTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR CCA 90 bp CCCGGAAGGCAGTTCCTAGATTCTGGAAGAGAGAATCCAATCAGGCTGACGTCTTCTCCAGGTTCTCCTTaGTCTTCAGGCGCGTCTTCT +
Preference number: 4 (lower is better)
Translates to: PGRQFLDSGRENPIRLTSSPGSP*SSGASS
Trigger: AGAAGACGCGCCTGAAGACCAAGGAGAACCTGGAGA...AGACGTCAGCCTGATTGGATTCTCTCTTCCAGAATCTAGGAACTGCCTTCCGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR CCA 90 bp AATCAAGCCTTGGACATGAAGCAGCACCCCACTCTCCCCAACTTTCAGGTAAAGCGGATCTTCTTGACGTaGAAGGTGAAAGGCGGCACC +
Preference number: 4 (lower is better)
Translates to: NQALDMKQHPTLPNFQVKRIFLT*KVKGGT
Trigger: GGTGCCGCCTTTCACCTTCCACGTCAAGAAGATCCG...CTTTACCTGAAAGTTGGGGAGAGTGGGGTGCTGCTTCATGTCCAAGGCTTGATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR TCA 90 bp AAGTTTCACATTAGAGAAAGATCCATGGTAGAAGCAGCTGAGAGGGAGTTAGGGTGGAGAAGGCCTTCTTaGAGTCGTCCACGCGCCGCA +
Preference number: 4 (lower is better)
Translates to: KFHIRERSMVEAAERELGWRRPS*SRPRAA
Trigger: TGCGGCGCGTGGACGACTTCAAGAAGGCCTTCTCCA...CCCTAACTCCCTCTCAGCTGCTTCTACCATGGATCTTTCTCTAATGTGAAACTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR TCA 90 bp TCAGTAACTATAAGAAATCAAGCCTTGGACATGAAGCAGCACCCCACTCTCCCCGTTTGGCCGGCAGCTTaGCTTCATCCTGGTAGATCA +
Preference number: 4 (lower is better)
Translates to: SVTIRNQALDMKQHPTLPVWPAA*LHPGRS
Trigger: TGATCTACCAGGATGAAGTCAAGCTGCCGGCCAAAC...GGGGAGAGTGGGGTGCTGCTTCATGTCCAAGGCTTGATTTCTTATAGTTACTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR GCA 90 bp ATTAAAGGGGGAACAAATGTGTCCTTAGGAGAAAACCTGGTCAGTAACTATAAGCGGGCACCAGGCGCGTaGCCAGCTTGTTCATGCGCT +
Preference number: 4 (lower is better)
Translates to: IKGGTNVSLGENLVSNYKRAPGA*PACSCA
Trigger: AGCGCATGAACAAGCTGGGCACGCGCCTGGTGCCCG...CTTATAGTTACTGACCAGGTTTTCTCCTAAGGACACATTTGTTCCCCCTTTAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR CAA 72 bp AAGGAAGTAGCCTGTAGCTATCAATTGGGGGAGGTGTaGCCTGCTCCTGATCAGCCATTAAAGGGGGAACAA +
Preference number: 4 (lower is better)
Translates to: KEVACSYQLGEV*PAPDQPLKGEQ
Trigger: TTGTTCCCCCTTTAATGGCTGATCAGGAGCAGGCAACACCTCCCCCAATTGATAGCTACAGGCTACTTCCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR CAA 72 bp CCACCACCTCTTATTTTGAAACTGCATCTGGCTAAATaGCTCATGCTGGCTTTGAGCTCACTCTGCAGCCCA +
Preference number: 4 (lower is better)
Translates to: PPPLILKLHLAK*LMLALSSLCSP
Trigger: TGGGCTGCAGAGTGAGCTCAAAGCCAGCATGAGCAATTTAGCCAGATGCAGTTTCAAAATAAGAGGTGGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR TCA 90 bp ATTAAAGGGGGAACAAATGTGTCCTTAGGAGAAAACCTGGTCAGTAACTATAAGCTTTCAGCGACTTGCTaGCGCTCAGTTTGGCCGGCA +
Preference number: 4 (lower is better)
Translates to: IKGGTNVSLGENLVSNYKLSATC*RSVWPA
Trigger: TGCCGGCCAAACTGAGCGTCAGCAAGTCGCTGAAAG...CTTATAGTTACTGACCAGGTTTTCTCCTAAGGACACATTTGTTCCCCCTTTAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR GCA 90 bp ATTAAAGGGGGAACAAATGTGTCCTTAGGAGAAAACCTGGTCAGTAACTATAAGCCAGGTTCTCACGCGTaGGCACCTTGGTCTTCTCCA +
Preference number: 4 (lower is better)
Translates to: IKGGTNVSLGENLVSNYKPGSHA*APWSSP
Trigger: TGGAGAAGACCAAGGTGCGCACGCGTGAGAACCTGG...CTTATAGTTACTGACCAGGTTTTCTCCTAAGGACACATTTGTTCCCCCTTTAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR GCA 90 bp ATTAAAGGGGGAACAAATGTGTCCTTAGGAGAAAACCTGGTCAGTAACTATAAGCGCTTCTCCAGCGTGTaGCGTGTCTTCTCCAGGTTC +
Preference number: 4 (lower is better)
Translates to: IKGGTNVSLGENLVSNYKRFSSV*RVFSRF
Trigger: GAACCTGGAGAAGACACGGCACACGCTGGAGAAGCG...CTTATAGTTACTGACCAGGTTTTCTCCTAAGGACACATTTGTTCCCCCTTTAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR CCA 90 bp ATTAAAGGGGGAACAAATGTGTCCTTAGGAGAAAACCTGGTCAGTAACTATAAGTCCAGTTTCTTTATCTaGCCGGCCTGGCGCTCCAGG +
Preference number: 4 (lower is better)
Translates to: IKGGTNVSLGENLVSNYKSSFFI*PAWRSR
Trigger: CCTGGAGCGCCAGGCCGGCCAGATAAAGAAACTGGA...CTTATAGTTACTGACCAGGTTTTCTCCTAAGGACACATTTGTTCCCCCTTTAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
3UTR CAA 72 bp GATCCTACCAAAGTGGGACTCTTGAATTTCTTTGTGTaGTTAACAAGGGCATTTCTTTCTAATTCCATTTCA +
Preference number: 4 (lower is better)
Translates to: DPTKVGLLNFFV*LTRAFLSNSIS
Trigger: TGAAATGGAATTAGAAAGAAATGCCCTTGTTAACAACACAAAGAAATTCAAGAGTCCCACTTTGGTAGGATC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS CCA 90 bp CCAGCAGCGTGTGCACGTCGGGGCTGCTCCCGCGCAGCAGGTCAGTaGCCTCGCCGCGCTCCGCGCCAACCTCGTCGTCCTCGGGACCCA +
Preference number: 5 (lower is better)
Translates to: PAACARRGCSRAAGQ*PRRAPRQPRRPRDP
Trigger: TGGGTCCCGAGGACGACGAGGTTGGCGCGGAGCGCGGCGAGGCCACTGACCTGCTGCGCGGGAGCAGCCCCGACGTGCACACGCTGCTGG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS GCA 90 bp TCCACCAGGACGGCGTCCGACTCCTCGGTGATCTCCAGCAGCGTGTaGACGTCGGGGCTGCTCCCGCGCAGCAGGTCAGTGGCCTCGCCG +
Preference number: 5 (lower is better)
Translates to: STRTASDSSVISSSV*TSGLLPRSRSVASP
Trigger: CGGCGAGGCCACTGACCTGCTGCGCGGGAGCAGCCCCGACGTGCACACGCTGCTGGAGATCACCGAGGAGTCGGACGCCGTCCTGGTGGA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS GCA 90 bp GTGGCGTGCGCCTTGCCCAGCTTGCTCAGCTCTCCCTGGATGCTCTaGACAGCGCCCTCCATCTCCGCCTGTCGCTCCTCCAGCTGGGCT +
Preference number: 5 (lower is better)
Translates to: VACALPSLLSSPWML*TAPSISACRSSSWA
Trigger: AGCCCAGCTGGAGGAGCGACAGGCGGAGATGGAGGGCGCTGTGCAGAGCATCCAGGGAGAGCTGAGCAAGCTGGGCAAGGCGCACGCCAC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS GCA 90 bp TCGTGGTGGCGTGCGCCTTGCCCAGCTTGCTCAGCTCTCCCTGGATaGTCTGCACAGCGCCCTCCATCTCCGCCTGTCGCTCCTCCAGCT +
Preference number: 5 (lower is better)
Translates to: SWWRAPCPACSALPG*SAQRPPSPPVAPPA
Trigger: AGCTGGAGGAGCGACAGGCGGAGATGGAGGGCGCTGTGCAGAGCATCCAGGGAGAGCTGAGCAAGCTGGGCAAGGCGCACGCCACCACGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS CCA 90 bp TTGCTCGTGGTGGCGTGCGCCTTGCCCAGCTTGCTCAGCTCTCCCTaGATGCTCTGCACAGCGCCCTCCATCTCCGCCTGTCGCTCCTCC +
Preference number: 5 (lower is better)
Translates to: LLVVACALPSLLSSP*MLCTAPSISACRSS
Trigger: GGAGGAGCGACAGGCGGAGATGGAGGGCGCTGTGCAGAGCATCCAGGGAGAGCTGAGCAAGCTGGGCAAGGCGCACGCCACCACGAGCAA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS CCA 90 bp CGGCGCCTCAGCAGCTCCGCCTCGTTGACCTCCAGTTTCTTTATCTaGCCGGCCTGGCGCTCCAGGCTGCCGCGCACGGTCTTCACGTTG +
Preference number: 5 (lower is better)
Translates to: RRLSSSASLTSSFFI*PAWRSRLPRTVFTL
Trigger: CAACGTGAAGACCGTGCGCGGCAGCCTGGAGCGCCAGGCCGGCCAGATAAAGAAACTGGAGGTCAACGAGGCGGAGCTGCTGAGGCGCCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS GCA 90 bp ACTTGCTCACGGTGTTGCTCGTGGTGGCGTGCGCCTTGCCCAGCTTaGTCAGCTCTCCCTGGATGCTCTGCACAGCGCCCTCCATCTCCG +
Preference number: 5 (lower is better)
Translates to: TCSRCCSWWRAPCPA*SALPGCSAQRPPSP
Trigger: CGGAGATGGAGGGCGCTGTGCAGAGCATCCAGGGAGAGCTGAGCAAGCTGGGCAAGGCGCACGCCACCACGAGCAACACCGTGAGCAAGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS CCA 90 bp AGCAGCTCCGCCTCGTTGACCTCCAGTTTCTTTATCTGGCCGGCCTaGCGCTCCAGGCTGCCGCGCACGGTCTTCACGTTGACGCTGACC +
Preference number: 5 (lower is better)
Translates to: SSSASLTSSFFIWPA*RSRLPRTVFTLTLT
Trigger: GGTCAGCGTCAACGTGAAGACCGTGCGCGGCAGCCTGGAGCGCCAGGCCGGCCAGATAAAGAAACTGGAGGTCAACGAGGCGGAGCTGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS CCA 90 bp CCGATGATTTTATCCAGAAGGCTCAGCACCAGCACACCGTTCACCTaGTCCGACTTGATCAGCTCGTCGGAGCCGGTCCCCGACGGCTCC +
Preference number: 5 (lower is better)
Translates to: PMILSRRLSTSTPFT*SDLISSSEPVPDGS
Trigger: GGAGCCGTCGGGGACCGGCTCCGACGAGCTGATCAAGTCGGACCAGGTGAACGGTGTGCTGGTGCTGAGCCTTCTGGATAAAATCATCGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS CCA 90 bp TGCACAGCGCCCTCCATCTCCGCCTGTCGCTCCTCCAGCTGGGCTTaGGTCAGCTGGATCTGGTCAACGGCGCCGATGATTTTATCCAGA +
Preference number: 5 (lower is better)
Translates to: CTAPSISACRSSSWA*VSWIWSTAPMILSR
Trigger: TCTGGATAAAATCATCGGCGCCGTTGACCAGATCCAGCTGACCCAAGCCCAGCTGGAGGAGCGACAGGCGGAGATGGAGGGCGCTGTGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS CCA 90 bp ATGCTCTGCACAGCGCCCTCCATCTCCGCCTGTCGCTCCTCCAGCTaGGCTTGGGTCAGCTGGATCTGGTCAACGGCGCCGATGATTTTA +
Preference number: 5 (lower is better)
Translates to: MLCTAPSISACRSSS*AWVSWIWSTAPMIL
Trigger: TAAAATCATCGGCGCCGTTGACCAGATCCAGCTGACCCAAGCCCAGCTGGAGGAGCGACAGGCGGAGATGGAGGGCGCTGTGCAGAGCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR CAA 90 bp AGCTTCCAGCTAGGGAGCTCAGCTCCAGAGGCACCTTGCTTTCCCCAGCTGCCATTCACCTGGTCCGACTaGATCAGCTCGTCGGAGCCG +
Preference number: 5 (lower is better)
Translates to: SFQLGSSAPEAPCFPQLPFTWSD*ISSSEP
Trigger: CGGCTCCGACGAGCTGATCAAGTCGGACCAGGTGAA...TGGCAGCTGGGGAAAGCAAGGTGCCTCTGGAGCTGAGCTCCCTAGCTGGAAGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS CCA 90 bp ATCTCCGCCTGTCGCTCCTCCAGCTGGGCTTGGGTCAGCTGGATCTaGTCAACGGCGCCGATGATTTTATCCAGAAGGCTCAGCACCAGC +
Preference number: 5 (lower is better)
Translates to: ISACRSSSWAWVSWI*STAPMILSRRLSTS
Trigger: GCTGGTGCTGAGCCTTCTGGATAAAATCATCGGCGCCGTTGACCAGATCCAGCTGACCCAAGCCCAGCTGGAGGAGCGACAGGCGGAGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR CAA 90 bp AACACAGCAACTCAAGGGACTCCCCTAGAGCCCACAGGAAACTGCATCTGCCCAGTGGTGGCGTGCGCCTaGCCCAGCTTGCTCAGCTCT +
Preference number: 5 (lower is better)
Translates to: NTATQGTPLEPTGNCICPVVACA*PSLLSS
Trigger: AGAGCTGAGCAAGCTGGGCAAGGCGCACGCCACCAC...TGGGCAGATGCAGTTTCCTGTGGGCTCTAGGGGAGTCCCTTGAGTTGCTGTGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR CAA 90 bp AGCTTCCAGCTAGGGAGCTCAGCTCCAGAGGCACCTTGCTTTCCCCAGCTGCCAACGTTGACGCTGACCTaGCGCACCTTCTCCAGCAAC +
Preference number: 5 (lower is better)
Translates to: SFQLGSSAPEAPCFPQLPTLTLT*RTFSSN
Trigger: GTTGCTGGAGAAGGTGCGCAAGGTCAGCGTCAACGT...TGGCAGCTGGGGAAAGCAAGGTGCCTCTGGAGCTGAGCTCCCTAGCTGGAAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS TCA 90 bp CCTCCAGCTGGGCTTGGGTCAGCTGGATCTGGTCAACGGCGCCGATaGTTTTATCCAGAAGGCTCAGCACCAGCACACCGTTCACCTGGT +
Preference number: 5 (lower is better)
Translates to: PPAGLGSAGSGQRRR*FYPEGSAPAHRSPG
Trigger: ACCAGGTGAACGGTGTGCTGGTGCTGAGCCTTCTGGATAAAATCATCGGCGCCGTTGACCAGATCCAGCTGACCCAAGCCCAGCTGGAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS TCA 90 bp TGTAGACAGCGGTCTTGGAGCGCGCATACACCACATGGTCGGGCGTaGAGGACTTGCGCAGCTTGTCCCGGGATGTCTTCAGCTTCTCTC +
Preference number: 5 (lower is better)
Translates to: CRQRSWSAHTPHGRA*RTCAACPGMSSASL
Trigger: GAGAGAAGCTGAAGACATCCCGGGACAAGCTGCGCAAGTCCTTCACGCCCGACCATGTGGTGTATGCGCGCTCCAAGACCGCTGTCTACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR CAA 90 bp TTTCACATTAGAGAAAGATCCATGGTAGAAGCAGCTGAGAGGGAGTTAGGGTGGCGCAGGCCGCTGCGCTaGATGCGCTCGGCGCGGGAC +
Preference number: 5 (lower is better)
Translates to: FHIRERSMVEAAERELGWRRPLR*MRSARD
Trigger: GTCCCGCGCCGAGCGCATCAAGCGCAGCGGCCTGCG...CCACCCTAACTCCCTCTCAGCTGCTTCTACCATGGATCTTTCTCTAATGTGAAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR CAA 90 bp CACTTACCCACCCTCCTCAGCTTCTCCGTCTCCAAGCATTCAGAGGAGGGAAGGCCCTCGCGGATCTTCTaGACGTGGAAGGTGAAAGGC +
Preference number: 5 (lower is better)
Translates to: HLPTLLSFSVSKHSEEGRPSRIF*TWKVKG
Trigger: GCCTTTCACCTTCCACGTCAAGAAGATCCGCGAGGG...CCTTCCCTCCTCTGAATGCTTGGAGACGGAGAAGCTGAGGAGGGTGGGTAAGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR CAA 90 bp CACTTACCCACCCTCCTCAGCTTCTCCGTCTCCAAGCATTCAGAGGAGGGAAGGTTCTCCAGGTTCTCCTaGGTCTTCAGGCGCGTCTTC +
Preference number: 5 (lower is better)
Translates to: HLPTLLSFSVSKHSEEGRFSRFS*VFRRVF
Trigger: GAAGACGCGCCTGAAGACCAAGGAGAACCTGGAGAA...CCTTCCCTCCTCTGAATGCTTGGAGACGGAGAAGCTGAGGAGGGTGGGTAAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR CAA 90 bp AACACAGCAACTCAAGGGACTCCCCTAGAGCCCACAGGAAACTGCATCTGCCCATTGCTGACGCTCAGTTaGGCCGGCAGCTTGACTTCA +
Preference number: 5 (lower is better)
Translates to: NTATQGTPLEPTGNCICPLLTLS*AGSLTS
Trigger: TGAAGTCAAGCTGCCGGCCAAACTGAGCGTCAGCAA...TGGGCAGATGCAGTTTCCTGTGGGCTCTAGGGGAGTCCCTTGAGTTGCTGTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR CAA 90 bp TCTCTTTGGAACACACTTTCTAAAACTGACTTCCCTCCTGACCCGGAAGCTGCCTCGGGCGTGAAGGACTaGCGCAGCTTGTCCCGGGAT +
Preference number: 5 (lower is better)
Translates to: SLWNTLSKTDFPPDPEAASGVKD*RSLSRD
Trigger: ATCCCGGGACAAGCTGCGCAAGTCCTTCACGCCCGA...GGCAGCTTCCGGGTCAGGAGGGAAGTCAGTTTTAGAAAGTGTGTTCCAAAGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR CAA 90 bp GTGGGCCACCTCTGGGCAAAGGTCTCTCTACACACATTTTATCTTCGTGGAATTAACTTGCTCACGGTGTaGCTCGTGGTGGCGTGCGCC +
Preference number: 5 (lower is better)
Translates to: VGHLWAKVSLHTFYLRGINLLTV*LVVACA
Trigger: GGCGCACGCCACCACGAGCAACACCGTGAGCAAGTT...AATTCCACGAAGATAAAATGTGTGTAGAGAGACCTTTGCCCAGAGGTGGCCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR CAA 90 bp ACAACCAGGGCATGGGTCATTCTTCCCATATCCTACCCAGACTGTGTCCAAATTCGCACGGTCTTCACGTaGACGCTGACCTTGCGCACC +
Preference number: 5 (lower is better)
Translates to: TTRAWVILPISYPDCVQIRTVFT*TLTLRT
Trigger: GGTGCGCAAGGTCAGCGTCAACGTGAAGACCGTGCG...AATTTGGACACAGTCTGGGTAGGATATGGGAAGAATGACCCATGCCCTGGTTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR CAA 90 bp ACAAGGCTTCCCGGAAGGCAGTTCCTAGATTCTGGAAGAGAGAATCCAATCAGGTTGGAGAAGGCCTTCTaGAAGTCGTCCACGCGCCGC +
Preference number: 5 (lower is better)
Translates to: TRLPGRQFLDSGRENPIRLEKAF*KSSTRR
Trigger: GCGGCGCGTGGACGACTTCAAGAAGGCCTTCTCCAA...CCTGATTGGATTCTCTCTTCCAGAATCTAGGAACTGCCTTCCGGGAAGCCTTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR CAA 90 bp ACAACCAGGGCATGGGTCATTCTTCCCATATCCTACCCAGACTGTGTCCAAATTTCACGCGTGCGCACCTaGGTCTTCTCCATCTTCTCC +
Preference number: 5 (lower is better)
Translates to: TTRAWVILPISYPDCVQISRVRT*VFSIFS
Trigger: GGAGAAGATGGAGAAGACCAAGGTGCGCACGCGTGA...AATTTGGACACAGTCTGGGTAGGATATGGGAAGAATGACCCATGCCCTGGTTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR CAA 90 bp AAGTTTCACATTAGAGAAAGATCCATGGTAGAAGCAGCTGAGAGGGAGTTAGGGAGGCGCGTGCCCAGCTaGTTCATGCGCTTCTCCAGC +
Preference number: 5 (lower is better)
Translates to: KFHIRERSMVEAAERELGRRVPS*FMRFSS
Trigger: GCTGGAGAAGCGCATGAACAAGCTGGGCACGCGCCT...CCCTAACTCCCTCTCAGCTGCTTCTACCATGGATCTTTCTCTAATGTGAAACTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR CAA 90 bp TTTCACATTAGAGAAAGATCCATGGTAGAAGCAGCTGAGAGGGAGTTAGGGTGGATCATGACTTTGAAGTaGCGGCGCCTCAGCAGCTCC +
Preference number: 5 (lower is better)
Translates to: FHIRERSMVEAAERELGWIMTLK*RRLSSS
Trigger: GGAGCTGCTGAGGCGCCGCAACTTCAAAGTCATGAT...CCACCCTAACTCCCTCTCAGCTGCTTCTACCATGGATCTTTCTCTAATGTGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR CAA 90 bp ACACTCTGCCTTTTACCTCACCCTATTGCCTTAGTTCCCCCAAAGACCCTCAGGTTCTCCATCTTCTCCTaGGAGAAGGCCTTCTTGAAG +
Preference number: 5 (lower is better)
Translates to: TLCLLPHPIALVPPKTLRFSIFS*EKAFLK
Trigger: CTTCAAGAAGGCCTTCTCCAAGGAGAAGATGGAGAA...CCTGAGGGTCTTTGGGGGAACTAAGGCAATAGGGTGAGGTAAAAGGCAGAGTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS-3UTR CAA 90 bp ATTAAAGGGGGAACAAATGTGTCCTTAGGAGAAAACCTGGTCAGTAACTATAAGGACTCTTTCAGCGACTaGCTGACGCTCAGTTTGGCC +
Preference number: 5 (lower is better)
Translates to: IKGGTNVSLGENLVSNYKDSFSD*LTLSLA
Trigger: GGCCAAACTGAGCGTCAGCAAGTCGCTGAAAGAGTC...CTTATAGTTACTGACCAGGTTTTCTCCTAAGGACACATTTGTTCCCCCTTTAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS CCA 72 bp TGTGCACGTCGGGGCTGCTCCCGCGCAGCAGGTCAGTaGCCTCGCCGCGCTCCGCGCCAACCTCGTCGTCCT +
Preference number: 6 (lower is better)
Translates to: CARRGCSRAAGQ*PRRAPRQPRRP
Trigger: AGGACGACGAGGTTGGCGCGGAGCGCGGCGAGGCCACTGACCTGCTGCGCGGGAGCAGCCCCGACGTGCACA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS CCA 72 bp CCGACGGCTCCTCCGTGGCCCGCGCCTCCCCTTGGGTaGGCTCCGGGCCCTCTGAGGAAGCATCGGGAAATC +
Preference number: 6 (lower is better)
Translates to: PTAPPWPAPPLG*APGPLRKHREI
Trigger: GATTTCCCGATGCTTCCTCAGAGGGCCCGGAGCCCACCCAAGGGGAGGCGCGGGCCACGGAGGAGCCGTCGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS GCA 72 bp ACGGCGTCCGACTCCTCGGTGATCTCCAGCAGCGTGTaGACGTCGGGGCTGCTCCCGCGCAGCAGGTCAGTG +
Preference number: 6 (lower is better)
Translates to: TASDSSVISSSV*TSGLLPRSRSV
Trigger: CACTGACCTGCTGCGCGGGAGCAGCCCCGACGTGCACACGCTGCTGGAGATCACCGAGGAGTCGGACGCCGT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS CAA 90 bp GAGAAGGCCTTCTTGAAGTCGTCCACGCGCCGCAGGCCGCTGCGCTaGATGCGCTCGGCGCGGGACTCCTCGATCACCTCCTCCACCTCC +
Preference number: 6 (lower is better)
Translates to: EKAFLKSSTRRRPLR*MRSARDSSITSSTS
Trigger: GGAGGTGGAGGAGGTGATCGAGGAGTCCCGCGCCGAGCGCATCAAGCGCAGCGGCCTGCGGCGCGTGGACGACTTCAAGAAGGCCTTCTC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS TCA 72 bp CGCTCTTGTCCACCAGGACGGCGTCCGACTCCTCGGTaGTCTCCAGCAGCGTGTGCACGTCGGGGCTGCTCC +
Preference number: 6 (lower is better)
Translates to: RSCPPGRRPTPR*SPAACARRGCS
Trigger: GGAGCAGCCCCGACGTGCACACGCTGCTGGAGATCACCGAGGAGTCGGACGCCGTCCTGGTGGACAAGAGCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS CAA 72 bp TTCTTGAAGTCGTCCACGCGCCGCAGGCCGCTGCGCTaGATGCGCTCGGCGCGGGACTCCTCGATCACCTCC +
Preference number: 6 (lower is better)
Translates to: FLKSSTRRRPLR*MRSARDSSITS
Trigger: GGAGGTGATCGAGGAGTCCCGCGCCGAGCGCATCAAGCGCAGCGGCCTGCGGCGCGTGGACGACTTCAAGAA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS GCA 72 bp GCCTTGCCCAGCTTGCTCAGCTCTCCCTGGATGCTCTaGACAGCGCCCTCCATCTCCGCCTGTCGCTCCTCC +
Preference number: 6 (lower is better)
Translates to: ALPSLLSSPWML*TAPSISACRSS
Trigger: GGAGGAGCGACAGGCGGAGATGGAGGGCGCTGTGCAGAGCATCCAGGGAGAGCTGAGCAAGCTGGGCAAGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS CCA 72 bp AGCAGCTCCGCCTCGTTGACCTCCAGTTTCTTTATCTaGCCGGCCTGGCGCTCCAGGCTGCCGCGCACGGTC +
Preference number: 6 (lower is better)
Translates to: SSSASLTSSFFI*PAWRSRLPRTV
Trigger: GACCGTGCGCGGCAGCCTGGAGCGCCAGGCCGGCCAGATAAAGAAACTGGAGGTCAACGAGGCGGAGCTGCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS GCA 72 bp TCAGCTTCTCTCGTCGCTCCACGGGCACCAGGCGCGTaGCCAGCTTGTTCATGCGCTTCTCCAGCGTGTGCC +
Preference number: 6 (lower is better)
Translates to: SASLVAPRAPGA*PACSCASPACA
Trigger: GGCACACGCTGGAGAAGCGCATGAACAAGCTGGGCACGCGCCTGGTGCCCGTGGAGCGACGAGAGAAGCTGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS CAA 72 bp TCTCGTCGCTCCACGGGCACCAGGCGCGTGCCCAGCTaGTTCATGCGCTTCTCCAGCGTGTGCCGTGTCTTC +
Preference number: 6 (lower is better)
Translates to: SRRSTGTRRVPS*FMRFSSVCRVF
Trigger: GAAGACACGGCACACGCTGGAGAAGCGCATGAACAAGCTGGGCACGCGCCTGGTGCCCGTGGAGCGACGAGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS CAA 90 bp TTATCCAGAAGGCTCAGCACCAGCACACCGTTCACCTGGTCCGACTaGATCAGCTCGTCGGAGCCGGTCCCCGACGGCTCCTCCGTGGCC +
Preference number: 6 (lower is better)
Translates to: LSRRLSTSTPFTWSD*ISSSEPVPDGSSVA
Trigger: GGCCACGGAGGAGCCGTCGGGGACCGGCTCCGACGAGCTGATCAAGTCGGACCAGGTGAACGGTGTGCTGGTGCTGAGCCTTCTGGATAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS GCA 72 bp GCCCTCGCCCAGCTCGTCACCCTCCTTCTCAGGCAGTaGCTCCGACTCTTTCAGCGACTTGCTGACGCTCAG +
Preference number: 6 (lower is better)
Translates to: ALAQLVTLLLRQ*LRLFQRLADAQ
Trigger: CTGAGCGTCAGCAAGTCGCTGAAAGAGTCGGAGGCACTGCCTGAGAAGGAGGGTGACGAGCTGGGCGAGGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS CAA 90 bp AACTTGCTCACGGTGTTGCTCGTGGTGGCGTGCGCCTTGCCCAGCTaGCTCAGCTCTCCCTGGATGCTCTGCACAGCGCCCTCCATCTCC +
Preference number: 6 (lower is better)
Translates to: NLLTVLLVVACALPS*LSSPWMLCTAPSIS
Trigger: GGAGATGGAGGGCGCTGTGCAGAGCATCCAGGGAGAGCTGAGCAAGCTGGGCAAGGCGCACGCCACCACGAGCAACACCGTGAGCAAGTT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS CAA 90 bp TTCTCCAGCAACTTGCTCACGGTGTTGCTCGTGGTGGCGTGCGCCTaGCCCAGCTTGCTCAGCTCTCCCTGGATGCTCTGCACAGCGCCC +
Preference number: 6 (lower is better)
Translates to: FSSNLLTVLLVVACA*PSLLSSPWMLCTAP
Trigger: GGGCGCTGTGCAGAGCATCCAGGGAGAGCTGAGCAAGCTGGGCAAGGCGCACGCCACCACGAGCAACACCGTGAGCAAGTTGCTGGAGAA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS CAA 90 bp GAGCGCGCATACACCACATGGTCGGGCGTGAAGGACTTGCGCAGCTaGTCCCGGGATGTCTTCAGCTTCTCTCGTCGCTCCACGGGCACC +
Preference number: 6 (lower is better)
Translates to: ERAYTTWSGVKDLRS*SRDVFSFSRRSTGT
Trigger: GGTGCCCGTGGAGCGACGAGAGAAGCTGAAGACATCCCGGGACAAGCTGCGCAAGTCCTTCACGCCCGACCATGTGGTGTATGCGCGCTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS CAA 90 bp GCGGTCTTGGAGCGCGCATACACCACATGGTCGGGCGTGAAGGACTaGCGCAGCTTGTCCCGGGATGTCTTCAGCTTCTCTCGTCGCTCC +
Preference number: 6 (lower is better)
Translates to: AVLERAYTTWSGVKD*RSLSRDVFSFSRRS
Trigger: GGAGCGACGAGAGAAGCTGAAGACATCCCGGGACAAGCTGCGCAAGTCCTTCACGCCCGACCATGTGGTGTATGCGCGCTCCAAGACCGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS GCA 72 bp TCCAGCAACTTGCTCACGGTGTTGCTCGTGGTGGCGTaGGCCTTGCCCAGCTTGCTCAGCTCTCCCTGGATG +
Preference number: 6 (lower is better)
Translates to: SSNLLTVLLVVA*ALPSLLSSPWM
Trigger: CATCCAGGGAGAGCTGAGCAAGCTGGGCAAGGCGCACGCCACCACGAGCAACACCGTGAGCAAGTTGCTGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS CAA 72 bp AACTTGCTCACGGTGTTGCTCGTGGTGGCGTGCGCCTaGCCCAGCTTGCTCAGCTCTCCCTGGATGCTCTGC +
Preference number: 6 (lower is better)
Translates to: NLLTVLLVVACA*PSLLSSPWMLC
Trigger: GCAGAGCATCCAGGGAGAGCTGAGCAAGCTGGGCAAGGCGCACGCCACCACGAGCAACACCGTGAGCAAGTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS CAA 90 bp TCCAGGTTCTCACGCGTGCGCACCTTGGTCTTCTCCATCTTCTCCTaGGAGAAGGCCTTCTTGAAGTCGTCCACGCGCCGCAGGCCGCTG +
Preference number: 6 (lower is better)
Translates to: SRFSRVRTLVFSIFS*EKAFLKSSTRRRPL
Trigger: CAGCGGCCTGCGGCGCGTGGACGACTTCAAGAAGGCCTTCTCCAAGGAGAAGATGGAGAAGACCAAGGTGCGCACGCGTGAGAACCTGGA
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS TCA 72 bp CGGTCTTGGAGCGCGCATACACCACATGGTCGGGCGTaGAGGACTTGCGCAGCTTGTCCCGGGATGTCTTCA +
Preference number: 6 (lower is better)
Translates to: RSWSAHTPHGRA*RTCAACPGMSS
Trigger: TGAAGACATCCCGGGACAAGCTGCGCAAGTCCTTCACGCCCGACCATGTGGTGTATGCGCGCTCCAAGACCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS CCA 72 bp TTATCCAGAAGGCTCAGCACCAGCACACCGTTCACCTaGTCCGACTTGATCAGCTCGTCGGAGCCGGTCCCC +
Preference number: 6 (lower is better)
Translates to: LSRRLSTSTPFT*SDLISSSEPVP
Trigger: GGGGACCGGCTCCGACGAGCTGATCAAGTCGGACCAGGTGAACGGTGTGCTGGTGCTGAGCCTTCTGGATAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS CAA 72 bp ACTTTGAAGTTGCGGCGCCTCAGCAGCTCCGCCTCGTaGACCTCCAGTTTCTTTATCTGGCCGGCCTGGCGC +
Preference number: 6 (lower is better)
Translates to: TLKLRRLSSSAS*TSSFFIWPAWR
Trigger: GCGCCAGGCCGGCCAGATAAAGAAACTGGAGGTCAACGAGGCGGAGCTGCTGAGGCGCCGCAACTTCAAAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS CAA 72 bp TCACGCGTGCGCACCTTGGTCTTCTCCATCTTCTCCTaGGAGAAGGCCTTCTTGAAGTCGTCCACGCGCCGC +
Preference number: 6 (lower is better)
Translates to: SRVRTLVFSIFS*EKAFLKSSTRR
Trigger: GCGGCGCGTGGACGACTTCAAGAAGGCCTTCTCCAAGGAGAAGATGGAGAAGACCAAGGTGCGCACGCGTGA
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS CAA 72 bp TACACCACATGGTCGGGCGTGAAGGACTTGCGCAGCTaGTCCCGGGATGTCTTCAGCTTCTCTCGTCGCTCC +
Preference number: 6 (lower is better)
Translates to: YTTWSGVKDLRS*SRDVFSFSRRS
Trigger: GGAGCGACGAGAGAAGCTGAAGACATCCCGGGACAAGCTGCGCAAGTCCTTCACGCCCGACCATGTGGTGTA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS CAA 72 bp GAGCGCGCATACACCACATGGTCGGGCGTGAAGGACTaGCGCAGCTTGTCCCGGGATGTCTTCAGCTTCTCT +
Preference number: 6 (lower is better)
Translates to: ERAYTTWSGVKD*RSLSRDVFSFS
Trigger: AGAGAAGCTGAAGACATCCCGGGACAAGCTGCGCAAGTCCTTCACGCCCGACCATGTGGTGTATGCGCGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS TCA 72 bp GGGCTTGGGTCAGCTGGATCTGGTCAACGGCGCCGATaGTTTTATCCAGAAGGCTCAGCACCAGCACACCGT +
Preference number: 6 (lower is better)
Translates to: GLGSAGSGQRRR*FYPEGSAPAHR
Trigger: ACGGTGTGCTGGTGCTGAGCCTTCTGGATAAAATCATCGGCGCCGTTGACCAGATCCAGCTGACCCAAGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS CCA 72 bp TGTCGCTCCTCCAGCTGGGCTTGGGTCAGCTGGATCTaGTCAACGGCGCCGATGATTTTATCCAGAAGGCTC +
Preference number: 6 (lower is better)
Translates to: CRSSSWAWVSWI*STAPMILSRRL
Trigger: GAGCCTTCTGGATAAAATCATCGGCGCCGTTGACCAGATCCAGCTGACCCAAGCCCAGCTGGAGGAGCGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS CAA 72 bp TTCTCCAGCGTGTGCCGTGTCTTCTCCAGGTTCTCCTaGGTCTTCAGGCGCGTCTTCTCCAGGTTCTCACGC +
Preference number: 6 (lower is better)
Translates to: FSSVCRVFSRFS*VFRRVFSRFSR
Trigger: GCGTGAGAACCTGGAGAAGACGCGCCTGAAGACCAAGGAGAACCTGGAGAAGACACGGCACACGCTGGAGAA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS CAA 72 bp TCCTTCTCAGGCAGTGCCTCCGACTCTTTCAGCGACTaGCTGACGCTCAGTTTGGCCGGCAGCTTGACTTCA +
Preference number: 6 (lower is better)
Translates to: SFSGSASDSFSD*LTLSLAGSLTS
Trigger: TGAAGTCAAGCTGCCGGCCAAACTGAGCGTCAGCAAGTCGCTGAAAGAGTCGGAGGCACTGCCTGAGAAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6
CDS CAA 90 bp TTGGTCTTCAGGCGCGTCTTCTCCAGGTTCTCACGCGTGCGCACCTaGGTCTTCTCCATCTTCTCCTTGGAGAAGGCCTTCTTGAAGTCG +
Preference number: 6 (lower is better)
Translates to: LVFRRVFSRFSRVRT*VFSIFSLEKAFLKS
Trigger: CGACTTCAAGAAGGCCTTCTCCAAGGAGAAGATGGAGAAGACCAAGGTGCGCACGCGTGAGAACCTGGAGAAGACGCGCCTGAAGACCAA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060792.6