RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CAV3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000062694

Ensembl transcript IDs: ENSMUST00000075477.8

Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TGCCTCTTAAGGAACCCTCCGCTCAGTCAGGGCCGCCGGGGTTCATaGGAGGCTGAGCGGAGCAGGGGTGCCCGTGTTTCCACACTGGGC +
Preference number: 1 (lower is better)
Translates to: CLLRNPPLSQGRRGS*EAERSRGARVSTLG
Trigger: GCCCAGTGTGGAAACACGGGCACCCCTGCTCCGCTCAGCCTCCCATGAACCCCGGCGGCCCTGACTGAGCGGAGGGTTCCTTAAGAGGCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075477.8
3UTR GCA 90 bp AGACTGGCTATTACAGTACATGTGAACGCAAAGCCTTGCGCTAGCTaGCTCTTAAGGAACCCTCCGCTCAGTCAGGGCCGCCGGGGTTCA +
Preference number: 1 (lower is better)
Translates to: RLAITVHVNAKPCAS*LLRNPPLSQGRRGS
Trigger: TGAACCCCGGCGGCCCTGACTGAGCGGAGGGTTCCTTAAGAGGCAGCTAGCGCAAGGCTTTGCGTTCACATGTACTGTAATAGCCAGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075477.8
3UTR CCA 90 bp GAATTGAGAGGAACCTCAAAAGGAAGAGCTCTCCAGCAGCCCATGTaGAGCAGAGCCAGGTATGCTCACCTGACCTTTGATCCCCCTGCC +
Preference number: 1 (lower is better)
Translates to: ELRGTSKGRALQQPM*SRARYAHLTFDPPA
Trigger: GGCAGGGGGATCAAAGGTCAGGTGAGCATACCTGGCTCTGCTCCACATGGGCTGCTGGAGAGCTCTTCCTTTTGAGGTTCCTCTCAATTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000075477.8
3UTR GCA 90 bp ACCTCTAGAAGACTGGCTATTACAGTACATGTGAACGCAAAGCCTTaGGCTAGCTGCCTCTTAAGGAACCCTCCGCTCAGTCAGGGCCGC +
Preference number: 1 (lower is better)
Translates to: TSRRLAITVHVNAKP*ASCLLRNPPLSQGR
Trigger: GCGGCCCTGACTGAGCGGAGGGTTCCTTAAGAGGCAGCTAGCGCAAGGCTTTGCGTTCACATGTACTGTAATAGCCAGTCTTCTAGAGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075477.8
3UTR TCA 90 bp CTTCTGGCTCCTCCCGCACCAAGTTTTCCCATCTTGAGGTGGAATTaGGAGGAACCTCAAAAGGAAGAGCTCTCCAGCAGCCCATGTGGA +
Preference number: 1 (lower is better)
Translates to: LLAPPAPSFPILRWN*EEPQKEELSSSPCG
Trigger: TCCACATGGGCTGCTGGAGAGCTCTTCCTTTTGAGGTTCCTCTCAATTCCACCTCAAGATGGGAAAACTTGGTGCGGGAGGAGCCAGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075477.8
3UTR CAA 90 bp CCTTCTGGCTCCTCCCGCACCAAGTTTTCCCATCTTGAGGTGGAATaGAGAGGAACCTCAAAAGGAAGAGCTCTCCAGCAGCCCATGTGG +
Preference number: 2 (lower is better)
Translates to: PSGSSRTKFSHLEVE*RGTSKGRALQQPMW
Trigger: CCACATGGGCTGCTGGAGAGCTCTTCCTTTTGAGGTTCCTCTCAATTCCACCTCAAGATGGGAAAACTTGGTGCGGGAGGAGCCAGAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075477.8
3UTR-3UTR TCA 90 bp ACCAAGTTTTCCCATCTTGAGGTGGAATTGAGAGGAACCTCAAAAGGAAGAGCTCCAGGTATGCTCACCTaGCCTTTGATCCCCCTGCCC +
Preference number: 2 (lower is better)
Translates to: TKFSHLEVELRGTSKGRAPGMLT*PLIPLP
Trigger: GGGCAGGGGGATCAAAGGTCAGGTGAGCATACCTGG...AGCTCTTCCTTTTGAGGTTCCTCTCAATTCCACCTCAAGATGGGAAAACTTGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000075477.8
3UTR-3UTR GCA 90 bp GCAGTTAAAACCCTTTATTGCAGCACCTTCCTCAATGCCGGCAGTCACTGCTTGGTGAACGCAAAGCCTTaGGCTAGCTGCCTCTTAAGG +
Preference number: 2 (lower is better)
Translates to: AVKTLYCSTFLNAGSHCLVNAKP*ASCLLR
Trigger: CCTTAAGAGGCAGCTAGCGCAAGGCTTTGCGTTCAC...CAAGCAGTGACTGCCGGCATTGAGGAAGGTGCTGCAATAAAGGGTTTTAACTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075477.8
3UTR TCA 72 bp TCCGCTCAGTCAGGGCCGCCGGGGTTCATGGGAGGCTaGGCGGAGCAGGGGTGCCCGTGTTTCCACACTGGG +
Preference number: 3 (lower is better)
Translates to: SAQSGPPGFMGG*AEQGCPCFHTG
Trigger: CCCAGTGTGGAAACACGGGCACCCCTGCTCCGCTCAGCCTCCCATGAACCCCGGCGGCCCTGACTGAGCGGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075477.8
3UTR TCA 72 bp AGCAGCCCATGTGGAGCAGAGCCAGGTATGCTCACCTaGCCTTTGATCCCCCTGCCCAGCCTTCCCCACAGC +
Preference number: 3 (lower is better)
Translates to: SSPCGAEPGMLT*PLIPLPSLPHS
Trigger: GCTGTGGGGAAGGCTGGGCAGGGGGATCAAAGGTCAGGTGAGCATACCTGGCTCTGCTCCACATGGGCTGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000075477.8
3UTR GCA 72 bp ATTACAGTACATGTGAACGCAAAGCCTTGCGCTAGCTaGCTCTTAAGGAACCCTCCGCTCAGTCAGGGCCGC +
Preference number: 3 (lower is better)
Translates to: ITVHVNAKPCAS*LLRNPPLSQGR
Trigger: GCGGCCCTGACTGAGCGGAGGGTTCCTTAAGAGGCAGCTAGCGCAAGGCTTTGCGTTCACATGTACTGTAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075477.8
3UTR CCA 72 bp GGAACCTCAAAAGGAAGAGCTCTCCAGCAGCCCATGTaGAGCAGAGCCAGGTATGCTCACCTGACCTTTGAT +
Preference number: 3 (lower is better)
Translates to: GTSKGRALQQPM*SRARYAHLTFD
Trigger: ATCAAAGGTCAGGTGAGCATACCTGGCTCTGCTCCACATGGGCTGCTGGAGAGCTCTTCCTTTTGAGGTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075477.8
3UTR TCA 72 bp TCCTTCTGGCTCCTCCCGCACCAAGTTTTCCCATCTTaGGGTGGAATTGAGAGGAACCTCAAAAGGAAGAGC +
Preference number: 3 (lower is better)
Translates to: SFWLLPHQVFPS*GGIERNLKRKS
Trigger: GCTCTTCCTTTTGAGGTTCCTCTCAATTCCACCTCAAGATGGGAAAACTTGGTGCGGGAGGAGCCAGAAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075477.8
3UTR GCA 72 bp AGACTGGCTATTACAGTACATGTGAACGCAAAGCCTTaGGCTAGCTGCCTCTTAAGGAACCCTCCGCTCAGT +
Preference number: 3 (lower is better)
Translates to: RLAITVHVNAKP*ASCLLRNPPLS
Trigger: ACTGAGCGGAGGGTTCCTTAAGAGGCAGCTAGCGCAAGGCTTTGCGTTCACATGTACTGTAATAGCCAGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075477.8
CDS-3UTR TCA 90 bp ACCCTCCGCTCAGTCAGGGCCGCCGGGGTTCATGGGAGGCTGAGCGGAGCAGGGGGTGCGGATACACAGTaGGTAGATGTGGCTGATGCA +
Preference number: 4 (lower is better)
Translates to: TLRSVRAAGVHGRLSGAGGADTQ*VDVADA
Trigger: TGCATCAGCCACATCTACTCACTGTGTATCCGCACC...CCCTGCTCCGCTCAGCCTCCCATGAACCCCGGCGGCCCTGACTGAGCGGAGGGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000075477.8
CDS-3UTR CCA 90 bp GCCCGTGTTTCCACACTGGGCTGTCTTTTCCTTCTGGCTCCTCCCGCACCAAGTATGTTGCTGCAGACCTaGCCCAACGCAGCGAAGAGC +
Preference number: 4 (lower is better)
Translates to: ARVSTLGCLFLLAPPAPSMLLQT*PNAAKS
Trigger: GCTCTTCGCTGCGTTGGGCCAGGTCTGCAGCAACAT...ACTTGGTGCGGGAGGAGCCAGAAGGAAAAGACAGCCCAGTGTGGAAACACGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075477.8
CDS-3UTR GCA 90 bp GCCCGTGTTTCCACACTGGGCTGTCTTTTCCTTCTGGCTCCTCCCGCACCAAGTCAGCGAAGAGCGGGTTaGAGAAGGTGCGGATACACA +
Preference number: 4 (lower is better)
Translates to: ARVSTLGCLFLLAPPAPSQRRAG*RRCGYT
Trigger: TGTGTATCCGCACCTTCTGCAACCCGCTCTTCGCTG...ACTTGGTGCGGGAGGAGCCAGAAGGAAAAGACAGCCCAGTGTGGAAACACGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075477.8
CDS-3UTR GCA 90 bp AACCTCAAAAGGAAGAGCTCTCCAGCAGCCCATGTGGAGCAGAGCCAGGTATGCGCGGGTTGCAGAAGGTaGGGATACACAGTGAGTAGA +
Preference number: 4 (lower is better)
Translates to: NLKRKSSPAAHVEQSQVCAGCRR*GYTVSR
Trigger: TCTACTCACTGTGTATCCGCACCTTCTGCAACCCGC...GCATACCTGGCTCTGCTCCACATGGGCTGCTGGAGAGCTCTTCCTTTTGAGGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075477.8
CDS-3UTR TCA 90 bp AGAAGACTGGCTATTACAGTACATGTGAACGCAAAGCCTTGCGCTAGCTGCCTCGTGAGTAGATGTGGCTaGTGCACTGGATCTCGATCA +
Preference number: 4 (lower is better)
Translates to: RRLAITVHVNAKPCASCLVSRCG*CTGSRS
Trigger: TGATCGAGATCCAGTGCATCAGCCACATCTACTCAC...GAGGCAGCTAGCGCAAGGCTTTGCGTTCACATGTACTGTAATAGCCAGTCTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075477.8
CDS-3UTR TCA 90 bp GAGACGAGTCACACCTCTAGAAGACTGGCTATTACAGTACATGTGAACGCAAAGTCACAATGTCCTCATTaGTGTTCTTGGGGTCGCGGT +
Preference number: 4 (lower is better)
Translates to: ETSHTSRRLAITVHVNAKSQCPH*CSWGRG
Trigger: ACCGCGACCCCAAGAACATCAATGAGGACATTGTGA...CTTTGCGTTCACATGTACTGTAATAGCCAGTCTTCTAGAGGTGTGACTCGTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075477.8
CDS-3UTR CAA 90 bp ACCCTCCGCTCAGTCAGGGCCGCCGGGGTTCATGGGAGGCTGAGCGGAGCAGGGAGCACCACCTTAATGTaGCTGCAGACCTGGCCCAAC +
Preference number: 5 (lower is better)
Translates to: TLRSVRAAGVHGRLSGAGSTTLM*LQTWPN
Trigger: GTTGGGCCAGGTCTGCAGCAACATTAAGGTGGTGCT...CCCTGCTCCGCTCAGCCTCCCATGAACCCCGGCGGCCCTGACTGAGCGGAGGGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075477.8
CDS-3UTR CAA 90 bp CCTCAAAAGGAAGAGCTCTCCAGCAGCCCATGTGGAGCAGAGCCAGGTATGCTCTTCACAATGTCCTCATaGATGTTCTTGGGGTCGCGG +
Preference number: 5 (lower is better)
Translates to: PQKEELSSSPCGAEPGMLFTMSS*MFLGSR
Trigger: CCGCGACCCCAAGAACATCAATGAGGACATTGTGAA...GAGCATACCTGGCTCTGCTCCACATGGGCTGCTGGAGAGCTCTTCCTTTTGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075477.8
CDS-3UTR CAA 90 bp ACCTCTAGAAGACTGGCTATTACAGTACATGTGAACGCAAAGCCTTGCGCTAGCGCAGCGAAGAGCGGGTaGCAGAAGGTGCGGATACAC +
Preference number: 5 (lower is better)
Translates to: TSRRLAITVHVNAKPCASAAKSG*QKVRIH
Trigger: GTGTATCCGCACCTTCTGCAACCCGCTCTTCGCTGC...GCTAGCGCAAGGCTTTGCGTTCACATGTACTGTAATAGCCAGTCTTCTAGAGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075477.8
CDS GCA 72 bp TGCTGCAGACCTGGCCCAACGCAGCGAAGAGCGGGTTaGAGAAGGTGCGGATACACAGTGAGTAGATGTGGC +
Preference number: 6 (lower is better)
Translates to: CCRPGPTQRRAG*RRCGYTVSRCG
Trigger: GCCACATCTACTCACTGTGTATCCGCACCTTCTGCAACCCGCTCTTCGCTGCGTTGGGCCAGGTCTGCAGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075477.8
CDS CCA 72 bp TCCCTTCGCAGCACCACCTTAATGTTGCTGCAGACCTaGCCCAACGCAGCGAAGAGCGGGTTGCAGAAGGTG +
Preference number: 6 (lower is better)
Translates to: SLRSTTLMLLQT*PNAAKSGLQKV
Trigger: CACCTTCTGCAACCCGCTCTTCGCTGCGTTGGGCCAGGTCTGCAGCAACATTAAGGTGGTGCTGCGAAGGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075477.8