RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CAV2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000000058

Ensembl transcript IDs: ENSMUST00000000058.7, ENSMUST00000115459.2, ENSMUST00000115462.2

Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTGTTTAAACTCTCAGCCGGGACTATTATTCTAAAGAAAGCACACTaGCCTTCAAGATTTCTCAGGTCTTGTTACCCTTGGGAACTAATG +
Preference number: 1 (lower is better)
Translates to: LFKLSAGTIILKKAH*PSRFLRSCYPWELM
Trigger: CATTAGTTCCCAAGGGTAACAAGACCTGAGAAATCTTGAAGGGCAGTGTGCTTTCTTTAGAATAATAGTCCCGGCTGAGAGTTTAAACAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115459.2
3UTR GCA 90 bp TTGCTGGGTAAGTTGGAGAGAACACCTAGACAGCACATTTTACACTaGATTCCAAAGAATCTATCAACATTCTCCTATAGGACATCACAG +
Preference number: 1 (lower is better)
Translates to: LLGKLERTPRQHILH*IPKNLSTFSYRTSQ
Trigger: CTGTGATGTCCTATAGGAGAATGTTGATAGATTCTTTGGAATGCAGTGTAAAATGTGCTGTCTAGGTGTTCTCTCCAACTTACCCAGCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000058.7
3UTR TCA 90 bp TCCTTACTCTTTATGAGCAGTTATGCACAAAATTACTCTAATGTCTaGGGAAGTTGCCCTTTGACCATTATCAAGTCATCACTGCAATTG +
Preference number: 1 (lower is better)
Translates to: SLLFMSSYAQNYSNV*GSCPLTIIKSSLQL
Trigger: CAATTGCAGTGATGACTTGATAATGGTCAAAGGGCAACTTCCTCAGACATTAGAGTAATTTTGTGCATAACTGCTCATAAAGAGTAAGGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000058.7
ENSMUST00000115462.2
3UTR-3UTR CCA 90 bp TGTCTCCCCTGGGTTCATGGCTGCCATTTACCAATAGCAAGACTTGAGTGGCTCTCTGCAAATGGGCCCTaGGAAATAGGAAGAGCAGAG +
Preference number: 2 (lower is better)
Translates to: CLPWVHGCHLPIARLEWLSANGP*EIGRAE
Trigger: CTCTGCTCTTCCTATTTCCCAGGGCCCATTTGCAGA...GAGCCACTCAAGTCTTGCTATTGGTAAATGGCAGCCATGAACCCAGGGGAGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115459.2
3UTR-3UTR CCA 90 bp GTAGATGTTCAACCCAATCATTGTAAACACTCCTGTCTCCCCTGGGTTCATGGCGCTCAGCCTTCTGCATaGAAGGAAAAATCACACCCA +
Preference number: 2 (lower is better)
Translates to: VDVQPNHCKHSCLPWVHGAQPSA*KEKSHP
Trigger: TGGGTGTGATTTTTCCTTCCATGCAGAAGGCTGAGC...GCCATGAACCCAGGGGAGACAGGAGTGTTTACAATGATTGGGTTGAACATCTAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000115459.2
3UTR-3UTR GCA 90 bp AACCCAATCATTGTAAACACTCCTGTCTCCCCTGGGTTCATGGCTGCCATTTACCTCAGCTCAGCCTTCTaGATGGAAGGAAAAATCACA +
Preference number: 2 (lower is better)
Translates to: NPIIVNTPVSPGFMAAIYLSSAF*MEGKIT
Trigger: TGTGATTTTTCCTTCCATGCAGAAGGCTGAGCTGAG...GTAAATGGCAGCCATGAACCCAGGGGAGACAGGAGTGTTTACAATGATTGGGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000115459.2
3UTR CAA 90 bp AAAGAAAGCACACTGCCCTTCAAGATTTCTCAGGTCTTGTTACCCTaGGGAACTAATGTAAGCGTTTTCTCTGCAAATGGGCCCTGGGAA +
Preference number: 2 (lower is better)
Translates to: KESTLPFKISQVLLP*GTNVSVFSANGPWE
Trigger: TTCCCAGGGCCCATTTGCAGAGAAAACGCTTACATTAGTTCCCAAGGGTAACAAGACCTGAGAAATCTTGAAGGGCAGTGTGCTTTCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115459.2
3UTR-3UTR TCA 90 bp TGTACAAAGTTCCTAGAATGTTGGAATGTATTGCCTCTAGCTAGCCTTATGACCGAGGAAGTTGCCCTTTaGCCATTATCAAGTCATCAC +
Preference number: 2 (lower is better)
Translates to: CTKFLECWNVLPLASLMTEEVAL*PLSSHH
Trigger: GTGATGACTTGATAATGGTCAAAGGGCAACTTCCTC...GGTCATAAGGCTAGCTAGAGGCAATACATTCCAACATTCTAGGAACTTTGTACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000058.7
3UTR-3UTR TCA 90 bp AAGGGAATTTCTTTGCCTCTGACTTCCAATTGCCCTGCCCCCAAAATCAACATATTTATCTTCTTTCAGTaGAGATTTGACACCCATGAG +
Preference number: 2 (lower is better)
Translates to: KGISLPLTSNCPAPKINIFIFFQ*RFDTHE
Trigger: CTCATGGGTGTCAAATCTTCACTGAAAGAAGATAAA...TATGTTGATTTTGGGGGCAGGGCAATTGGAAGTCAGAGGCAAAGAAATTCCCTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000000058.7
3UTR-3UTR GCA 90 bp AAGGGAATTTCTTTGCCTCTGACTTCCAATTGCCCTGCCCCCAAAATCAACATATATTTTGACCTGGTCTaGAATAGAATCCCAGTTCAA +
Preference number: 2 (lower is better)
Translates to: KGISLPLTSNCPAPKINIYFDLV*NRIPVQ
Trigger: TTGAACTGGGATTCTATTGCAGACCAGGTCAAAATA...TATGTTGATTTTGGGGGCAGGGCAATTGGAAGTCAGAGGCAAAGAAATTCCCTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000000058.7
3UTR-3UTR TCA 90 bp AAGTTCCTAGAATGTTGGAATGTATTGCCTCTAGCTAGCCTTATGACCATATCTAATTACTCTAATGTCTaGGGAAGTTGCCCTTTGACC +
Preference number: 2 (lower is better)
Translates to: KFLECWNVLPLASLMTISNYSNV*GSCPLT
Trigger: GGTCAAAGGGCAACTTCCTCAGACATTAGAGTAATT...AGATATGGTCATAAGGCTAGCTAGAGGCAATACATTCCAACATTCTAGGAACTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000058.7
3UTR-3UTR GCA 90 bp CTGACTTCCAATTGCCCTGCCCCCAAAATCAACATATTTGCATATTTAACTTTGCAGCACATTTTACACTaGATTCCAAAGAATCTATCA +
Preference number: 2 (lower is better)
Translates to: LTSNCPAPKINIFAYLTLQHILH*IPKNLS
Trigger: TGATAGATTCTTTGGAATGCAGTGTAAAATGTGCTG...CAAAGTTAAATATGCAAATATGTTGATTTTGGGGGCAGGGCAATTGGAAGTCAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000000058.7
3UTR-3UTR CCA 90 bp ATTAGTACAATAGCAAACACAAGAGAAACACACTCCAAAGCGATTTCATTAGAGAAGTTCCTAGAATGTTaGAATGTATTGCCTCTAGCT +
Preference number: 2 (lower is better)
Translates to: ISTIANTRETHSKAISLEKFLEC*NVLPLA
Trigger: AGCTAGAGGCAATACATTCCAACATTCTAGGAACTT...CTCTAATGAAATCGCTTTGGAGTGTGTTTCTCTTGTGTTTGCTATTGTACTAAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000058.7
3UTR CCA 72 bp GGAACTAATGTAAGCGTTTTCTCTGCAAATGGGCCCTaGGAAATAGGAAGAGCAGAGAGCAGGTGGCAAAAA +
Preference number: 3 (lower is better)
Translates to: GTNVSVFSANGP*EIGRAESRWQK
Trigger: TTTTTGCCACCTGCTCTCTGCTCTTCCTATTTCCCAGGGCCCATTTGCAGAGAAAACGCTTACATTAGTTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115459.2
3UTR GCA 72 bp CTCTCAGCCGGGACTATTATTCTAAAGAAAGCACACTaGCCTTCAAGATTTCTCAGGTCTTGTTACCCTTGG +
Preference number: 3 (lower is better)
Translates to: LSAGTIILKKAH*PSRFLRSCYPW
Trigger: CCAAGGGTAACAAGACCTGAGAAATCTTGAAGGGCAGTGTGCTTTCTTTAGAATAATAGTCCCGGCTGAGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115459.2
3UTR CCA 72 bp GTTCAACCCAATCATTGTAAACACTCCTGTCTCCCCTaGGTTCATGGCTGCCATTTACCAATAGCAAGACTT +
Preference number: 3 (lower is better)
Translates to: VQPNHCKHSCLP*VHGCHLPIARL
Trigger: AAGTCTTGCTATTGGTAAATGGCAGCCATGAACCCAGGGGAGACAGGAGTGTTTACAATGATTGGGTTGAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115459.2
3UTR-3UTR CAA 90 bp AAGGGAATTTCTTTGCCTCTGACTTCCAATTGCCCTGCCCCCAAAATCAACATATCTTTCAGTGAAGATTaGACACCCATGAGCATATTC +
Preference number: 3 (lower is better)
Translates to: KGISLPLTSNCPAPKINISFSED*TPMSIF
Trigger: GAATATGCTCATGGGTGTCAAATCTTCACTGAAAGA...TATGTTGATTTTGGGGGCAGGGCAATTGGAAGTCAGAGGCAAAGAAATTCCCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000000058.7
3UTR-3UTR CAA 90 bp CTGACTTCCAATTGCCCTGCCCCCAAAATCAACATATTTGCATATTTAACTTTGCCAGTCATAAAACATTaGCTGGGTAAGTTGGAGAGA +
Preference number: 3 (lower is better)
Translates to: LTSNCPAPKINIFAYLTLPVIKH*LGKLER
Trigger: TCTCTCCAACTTACCCAGCAAATGTTTTATGACTGG...CAAAGTTAAATATGCAAATATGTTGATTTTGGGGGCAGGGCAATTGGAAGTCAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000000058.7
3UTR GCA 72 bp GATAATAAGGGAATTTCTTTGCCTCTGACTTCCAATTaGCCTGCCCCCAAAATCAACATATTTGCATATTTA +
Preference number: 3 (lower is better)
Translates to: DNKGISLPLTSN*PAPKINIFAYL
Trigger: TAAATATGCAAATATGTTGATTTTGGGGGCAGGGCAATTGGAAGTCAGAGGCAAAGAAATTCCCTTATTATC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000000058.7
3UTR-3UTR CAA 90 bp ATTAGTACAATAGCAAACACAAGAGAAACACACTCCAAAGCGATTTCATTAGAGAAAGTTCCTAGAATGTaGGAATGTATTGCCTCTAGC +
Preference number: 3 (lower is better)
Translates to: ISTIANTRETHSKAISLEKVPRM*ECIASS
Trigger: GCTAGAGGCAATACATTCCAACATTCTAGGAACTTT...CTCTAATGAAATCGCTTTGGAGTGTGTTTCTCTTGTGTTTGCTATTGTACTAAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000058.7
3UTR TCA 72 bp CACAAAATTACTCTAATGTCTGAGGAAGTTGCCCTTTaGCCATTATCAAGTCATCACTGCAATTGTATGTTT +
Preference number: 3 (lower is better)
Translates to: HKITLMSEEVAL*PLSSHHCNCMF
Trigger: AAACATACAATTGCAGTGATGACTTGATAATGGTCAAAGGGCAACTTCCTCAGACATTAGAGTAATTTTGTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000058.7
ENSMUST00000115462.2
CDS-3UTR GCA 90 bp AGGCACGAGTCACAACAGGCCCTGGAGAGAGCAGCCTATGACAGGAAGTGGCCTTCGGCCATGAAGAGCTaGACATCGGCCTTCTCGGTC +
Preference number: 4 (lower is better)
Translates to: RHESQQALERAAYDRKWPSAMKS*TSAFSV
Trigger: GACCGAGAAGGCCGATGTGCAGCTCTTCATGGCCGA...AGGCCACTTCCTGTCATAGGCTGCTCTCTCCAGGGCCTGTTGTGACTCGTGCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115459.2
CDS-3UTR GCA 90 bp GGACCTGCCCAGAACCACAGGCACGAGTCACAACAGGCCCTGGAGAGAGCAGCCATACTTCTCAGGATCTaGGTAGTCAACGCCACTGTG +
Preference number: 4 (lower is better)
Translates to: GPAQNHRHESQQALERAAILLRI*VVNATV
Trigger: CACAGTGGCGTTGACTACGCAGATCCTGAGAAGTAT...GGCTGCTCTCTCCAGGGCCTGTTGTGACTCGTGCCTGTGGTTCTGGGCAGGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115459.2
CDS-3UTR TCA 90 bp CTGGGAAATAGGAAGAGCAGAGAGCAGGTGGCAAAAACTTCTGTAAGCTTCAGAACAGGATACCCGCAATaGAGGCCAAGGGGATGGCCA +
Preference number: 4 (lower is better)
Translates to: LGNRKSREQVAKTSVSFRTGYPQ*RPRGWP
Trigger: TGGCCATCCCCTTGGCCTTCATTGCGGGTATCCTGT...TCTGAAGCTTACAGAAGTTTTTGCCACCTGCTCTCTGCTCTTCCTATTTCCCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000115459.2
CDS-3UTR TCA 90 bp CTGACTTCCAATTGCCCTGCCCCCAAAATCAACATATTTGCATATTTAACTTTGACAGGATACCCGCAATaGAGGCCAAGGGGATGGCCA +
Preference number: 4 (lower is better)
Translates to: LTSNCPAPKINIFAYLTLTGYPQ*RPRGWP
Trigger: TGGCCATCCCCTTGGCCTTCATTGCGGGTATCCTGT...CAAAGTTAAATATGCAAATATGTTGATTTTGGGGGCAGGGCAATTGGAAGTCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000000058.7
CDS-3UTR GCA 90 bp AAGTTCCTAGAATGTTGGAATGTATTGCCTCTAGCTAGCCTTATGACCATATCTTCGGCCATGAAGAGCTaGACATCGGCCTTCTCGGTC +
Preference number: 4 (lower is better)
Translates to: KFLECWNVLPLASLMTISSAMKS*TSAFSV
Trigger: GACCGAGAAGGCCGATGTGCAGCTCTTCATGGCCGA...AGATATGGTCATAAGGCTAGCTAGAGGCAATACATTCCAACATTCTAGGAACTT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000058.7
CDS-3UTR GCA 90 bp AAGGGAATTTCTTTGCCTCTGACTTCCAATTGCCCTGCCCCCAAAATCAACATATGTAGTCTCAGGCTCTaGAATCAGATCCTCGAAGCC +
Preference number: 4 (lower is better)
Translates to: KGISLPLTSNCPAPKINICSLRL*NQILEA
Trigger: GGCTTCGAGGATCTGATTGCAGAGCCTGAGACTACA...TATGTTGATTTTGGGGGCAGGGCAATTGGAAGTCAGAGGCAAAGAAATTCCCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000000058.7
CDS-3UTR GCA 90 bp ACTAATGTAAGCGTTTTCTCTGCAAATGGGCCCTGGGAAATAGGAAGAGCAGAGCAAAGAGAGCATGGCTaGAGATCCACACTTTGTCAA +
Preference number: 4 (lower is better)
Translates to: TNVSVFSANGPWEIGRAEQREHG*RSTLCQ
Trigger: TTGACAAAGTGTGGATCTGCAGCCATGCTCTCTTTG...CTCTGCTCTTCCTATTTCCCAGGGCCCATTTGCAGAGAAAACGCTTACATTAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115459.2
CDS-3UTR TCA 90 bp AACCCAATCATTGTAAACACTCCTGTCTCCCCTGGGTTCATGGCTGCCATTTACACATCACATATTTGCTaGTTTCAAAGAGAGCATGGC +
Preference number: 4 (lower is better)
Translates to: NPIIVNTPVSPGFMAAIYTSHIC*FQREHG
Trigger: GCCATGCTCTCTTTGAAATCAGCAAATATGTGATGT...GTAAATGGCAGCCATGAACCCAGGGGAGACAGGAGTGTTTACAATGATTGGGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115459.2
3UTR CAA 72 bp ACACTGCCCTTCAAGATTTCTCAGGTCTTGTTACCCTaGGGAACTAATGTAAGCGTTTTCTCTGCAAATGGG +
Preference number: 4 (lower is better)
Translates to: TLPFKISQVLLP*GTNVSVFSANG
Trigger: CCCATTTGCAGAGAAAACGCTTACATTAGTTCCCAAGGGTAACAAGACCTGAGAAATCTTGAAGGGCAGTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115459.2
CDS-3UTR GCA 90 bp AAGTTCCTAGAATGTTGGAATGTATTGCCTCTAGCTAGCCTTATGACCATATCTATCAGGATCCAGATGTaGAGACAGCTGAGGGTAGCA +
Preference number: 4 (lower is better)
Translates to: KFLECWNVLPLASLMTISIRIQM*RQLRVA
Trigger: TGCTACCCTCAGCTGTCTGCACATCTGGATCCTGAT...AGATATGGTCATAAGGCTAGCTAGAGGCAATACATTCCAACATTCTAGGAACTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000058.7
CDS-3UTR GCA 90 bp AAGTTCCTAGAATGTTGGAATGTATTGCCTCTAGCTAGCCTTATGACCATATCTATACTTCTCAGGATCTaGGTAGTCAACGCCACTGTG +
Preference number: 4 (lower is better)
Translates to: KFLECWNVLPLASLMTISILLRI*VVNATV
Trigger: CACAGTGGCGTTGACTACGCAGATCCTGAGAAGTAT...AGATATGGTCATAAGGCTAGCTAGAGGCAATACATTCCAACATTCTAGGAACTT
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000058.7
CDS-3UTR GCA 90 bp TGTACAAAGTTCCTAGAATGTTGGAATGTATTGCCTCTAGCTAGCCTTATGACCCAAAGAGAGCATGGCTaGAGATCCACACTTTGTCAA +
Preference number: 4 (lower is better)
Translates to: CTKFLECWNVLPLASLMTQREHG*RSTLCQ
Trigger: TTGACAAAGTGTGGATCTGCAGCCATGCTCTCTTTG...GGTCATAAGGCTAGCTAGAGGCAATACATTCCAACATTCTAGGAACTTTGTACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000058.7
3UTR CAA 72 bp AAAGAAAGCACACTGCCCTTCAAGATTTCTCAGGTCTaGTTACCCTTGGGAACTAATGTAAGCGTTTTCTCT +
Preference number: 4 (lower is better)
Translates to: KESTLPFKISQV*LPLGTNVSVFS
Trigger: AGAGAAAACGCTTACATTAGTTCCCAAGGGTAACAAGACCTGAGAAATCTTGAAGGGCAGTGTGCTTTCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115459.2
CDS-3UTR GCA 90 bp AAGTTCCTAGAATGTTGGAATGTATTGCCTCTAGCTAGCCTTATGACCATATCTCTCTTCCATATTGTCTaGACGGAAGGCAAGACCATT +
Preference number: 4 (lower is better)
Translates to: KFLECWNVLPLASLMTISLFHIV*TEGKTI
Trigger: AATGGTCTTGCCTTCCGTGCAGACAATATGGAAGAG...AGATATGGTCATAAGGCTAGCTAGAGGCAATACATTCCAACATTCTAGGAACTT
41% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000058.7
CDS-3UTR TCA 90 bp ATTAGTACAATAGCAAACACAAGAGAAACACACTCCAAAGCGATTTCATTAGAGTACACAATGGGCCAATaGCAACGTCTGTCACACTCT +
Preference number: 4 (lower is better)
Translates to: ISTIANTRETHSKAISLEYTMGQ*QRLSHS
Trigger: AGAGTGTGACAGACGTTGTCATTGGCCCATTGTGTA...CTCTAATGAAATCGCTTTGGAGTGTGTTTCTCTTGTGTTTGCTATTGTACTAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000058.7
CDS-3UTR TCA 90 bp CTGACTTCCAATTGCCCTGCCCCCAAAATCAACATATTTGCATATTTAACTTTGACATCACATATTTGCTaGTTTCAAAGAGAGCATGGC +
Preference number: 4 (lower is better)
Translates to: LTSNCPAPKINIFAYLTLTSHIC*FQREHG
Trigger: GCCATGCTCTCTTTGAAATCAGCAAATATGTGATGT...CAAAGTTAAATATGCAAATATGTTGATTTTGGGGGCAGGGCAATTGGAAGTCAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000000058.7
3UTR CAA 72 bp TTAGAGATGTTTATTATGGATAATAAGGGAATTTCTTaGCCTCTGACTTCCAATTGCCCTGCCCCCAAAATC +
Preference number: 4 (lower is better)
Translates to: LEMFIMDNKGIS*PLTSNCPAPKI
Trigger: GATTTTGGGGGCAGGGCAATTGGAAGTCAGAGGCAAAGAAATTCCCTTATTATCCATAATAAACATCTCTAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000000058.7
CDS TCA 90 bp CCAGGGTCTGAGTGGTCAGTCGTGGCTCAGTTGCATGCTGACCGATaGGAAGCTGCGGCCCACACTTGTACACAATGGGCCAATGACAAC +
Preference number: 5 (lower is better)
Translates to: PGSEWSVVAQLHADR*EAAAHTCTQWANDN
Trigger: GTTGTCATTGGCCCATTGTGTACAAGTGTGGGCCGCAGCTTCTCATCGGTCAGCATGCAACTGAGCCACGACTGACCACTCAGACCCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115462.2
CDS GCA 90 bp GTGAGGATCCCGGTCGTGACTCGAGTCAACATACTTCTCAGGATCTaGGTAGTCAACGCCACTGTGGTGGCTGTAGGCGTCATCGGCCAT +
Preference number: 5 (lower is better)
Translates to: VRIPVVTRVNILLRI*VVNATVVAVGVIGH
Trigger: ATGGCCGATGACGCCTACAGCCACCACAGTGGCGTTGACTACGCAGATCCTGAGAAGTATGTTGACTCGAGTCACGACCGGGATCCTCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000058.7
ENSMUST00000115459.2
ENSMUST00000115462.2
CDS GCA 90 bp ATGTCTGGACCTGCCCAGGGTCTGAGTGGTCAGTCGTGGCTCAGTTaGATGCTGACCGATGAGAAGCTGCGGCCCACACTTGTACACAAT +
Preference number: 5 (lower is better)
Translates to: MSGPAQGLSGQSWLS*MLTDEKLRPTLVHN
Trigger: ATTGTGTACAAGTGTGGGCCGCAGCTTCTCATCGGTCAGCATGCAACTGAGCCACGACTGACCACTCAGACCCTGGGCAGGTCCAGACAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115462.2
CDS CCA 90 bp AGTATCCAAATGTCTGGACCTGCCCAGGGTCTGAGTGGTCAGTCGTaGCTCAGTTGCATGCTGACCGATGAGAAGCTGCGGCCCACACTT +
Preference number: 5 (lower is better)
Translates to: SIQMSGPAQGLSGQS*LSCMLTDEKLRPTL
Trigger: AAGTGTGGGCCGCAGCTTCTCATCGGTCAGCATGCAACTGAGCCACGACTGACCACTCAGACCCTGGGCAGGTCCAGACATTTGGATACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115462.2
CDS-3UTR CAA 90 bp GTAGATGTTCAACCCAATCATTGTAAACACTCCTGTCTCCCCTGGGTTCATGGCCTGCAGATCCACACTTaGTCAAAGGAGTGTGTAGTC +
Preference number: 5 (lower is better)
Translates to: VDVQPNHCKHSCLPWVHGLQIHT*SKECVV
Trigger: GACTACACACTCCTTTGACAAAGTGTGGATCTGCAG...GCCATGAACCCAGGGGAGACAGGAGTGTTTACAATGATTGGGTTGAACATCTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115459.2
CDS CCA 90 bp GTCAGGAACTTGTACATCACATATTTGCTGATTTCAAAGAGAGCATaGCTGCAGATCCACACTTTGTCAAAGGAGTGTGTAGTCTCAGGC +
Preference number: 5 (lower is better)
Translates to: VRNLYITYLLISKRA*LQIHTLSKECVVSG
Trigger: GCCTGAGACTACACACTCCTTTGACAAAGTGTGGATCTGCAGCCATGCTCTCTTTGAAATCAGCAAATATGTGATGTACAAGTTCCTGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000058.7
ENSMUST00000115459.2
CDS-3UTR CAA 90 bp CTGACTTCCAATTGCCCTGCCCCCAAAATCAACATATTTGCATATTTAACTTTGCTGCAGATCCACACTTaGTCAAAGGAGTGTGTAGTC +
Preference number: 5 (lower is better)
Translates to: LTSNCPAPKINIFAYLTLLQIHT*SKECVV
Trigger: GACTACACACTCCTTTGACAAAGTGTGGATCTGCAG...CAAAGTTAAATATGCAAATATGTTGATTTTGGGGGCAGGGCAATTGGAAGTCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000000058.7
CDS-3UTR CAA 90 bp CTGACTTCCAATTGCCCTGCCCCCAAAATCAACATATTTGCATATTTAACTTTGTCACACTCTTCCATATaGTCTGCACGGAAGGCAAGA +
Preference number: 5 (lower is better)
Translates to: LTSNCPAPKINIFAYLTLSHSSI*SARKAR
Trigger: TCTTGCCTTCCGTGCAGACAATATGGAAGAGTGTGA...CAAAGTTAAATATGCAAATATGTTGATTTTGGGGGCAGGGCAATTGGAAGTCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000000058.7
CDS TCA 72 bp CAACGCCACTGTGGTGGCTGTAGGCGTCATCGGCCATaGAGAGCTGCACATCGGCCTTCTCGGTCTCCAGCC +
Preference number: 6 (lower is better)
Translates to: QRHCGGCRRHRP*RAAHRPSRSPA
Trigger: GGCTGGAGACCGAGAAGGCCGATGTGCAGCTCTTCATGGCCGATGACGCCTACAGCCACCACAGTGGCGTTG
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000058.7
ENSMUST00000115459.2
ENSMUST00000115462.2
CDS GCA 72 bp CCTGCCCAGGGTCTGAGTGGTCAGTCGTGGCTCAGTTaGATGCTGACCGATGAGAAGCTGCGGCCCACACTT +
Preference number: 6 (lower is better)
Translates to: PAQGLSGQSWLS*MLTDEKLRPTL
Trigger: AAGTGTGGGCCGCAGCTTCTCATCGGTCAGCATGCAACTGAGCCACGACTGACCACTCAGACCCTGGGCAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115462.2
CDS CCA 72 bp ATGTCTGGACCTGCCCAGGGTCTGAGTGGTCAGTCGTaGCTCAGTTGCATGCTGACCGATGAGAAGCTGCGG +
Preference number: 6 (lower is better)
Translates to: MSGPAQGLSGQS*LSCMLTDEKLR
Trigger: CCGCAGCTTCTCATCGGTCAGCATGCAACTGAGCCACGACTGACCACTCAGACCCTGGGCAGGTCCAGACAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115462.2
CDS TCA 72 bp GAGTGGTCAGTCGTGGCTCAGTTGCATGCTGACCGATaGGAAGCTGCGGCCCACACTTGTACACAATGGGCC +
Preference number: 6 (lower is better)
Translates to: EWSVVAQLHADR*EAAAHTCTQWA
Trigger: GGCCCATTGTGTACAAGTGTGGGCCGCAGCTTCTCATCGGTCAGCATGCAACTGAGCCACGACTGACCACTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115462.2
CDS GCA 72 bp CCGGTCGTGACTCGAGTCAACATACTTCTCAGGATCTaGGTAGTCAACGCCACTGTGGTGGCTGTAGGCGTC +
Preference number: 6 (lower is better)
Translates to: PVVTRVNILLRI*VVNATVVAVGV
Trigger: GACGCCTACAGCCACCACAGTGGCGTTGACTACGCAGATCCTGAGAAGTATGTTGACTCGAGTCACGACCGG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000058.7
ENSMUST00000115459.2
ENSMUST00000115462.2
CDS TCA 72 bp AGAAGCTGCGGCCCACACTTGTACACAATGGGCCAATaGCAACGTCTGTCACACTCTTCCATATTGTCTGCA +
Preference number: 6 (lower is better)
Translates to: RSCGPHLYTMGQ*QRLSHSSILSA
Trigger: TGCAGACAATATGGAAGAGTGTGACAGACGTTGTCATTGGCCCATTGTGTACAAGTGTGGGCCGCAGCTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000058.7
ENSMUST00000115462.2
CDS CAA 90 bp CCCGCAATGAAGGCCAAGGGGATGGCCAGAAATACGGTCAGGAACTaGTACATCACATATTTGCTGATTTCAAAGAGAGCATGGCTGCAG +
Preference number: 6 (lower is better)
Translates to: PAMKAKGMARNTVRN*YITYLLISKRAWLQ
Trigger: CTGCAGCCATGCTCTCTTTGAAATCAGCAAATATGTGATGTACAAGTTCCTGACCGTATTTCTGGCCATCCCCTTGGCCTTCATTGCGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000058.7
ENSMUST00000115459.2
CDS CAA 72 bp CTGATTTCAAAGAGAGCATGGCTGCAGATCCACACTTaGTCAAAGGAGTGTGTAGTCTCAGGCTCTGCAATC +
Preference number: 6 (lower is better)
Translates to: LISKRAWLQIHT*SKECVVSGSAI
Trigger: GATTGCAGAGCCTGAGACTACACACTCCTTTGACAAAGTGTGGATCTGCAGCCATGCTCTCTTTGAAATCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000058.7
ENSMUST00000115459.2
CDS CAA 90 bp ACATATTTGCTGATTTCAAAGAGAGCATGGCTGCAGATCCACACTTaGTCAAAGGAGTGTGTAGTCTCAGGCTCTGCAATCAGATCCTCG +
Preference number: 6 (lower is better)
Translates to: TYLLISKRAWLQIHT*SKECVVSGSAIRSS
Trigger: CGAGGATCTGATTGCAGAGCCTGAGACTACACACTCCTTTGACAAAGTGTGGATCTGCAGCCATGCTCTCTTTGAAATCAGCAAATATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000058.7
ENSMUST00000115459.2
CDS CAA 90 bp AAGGGGATGGCCAGAAATACGGTCAGGAACTTGTACATCACATATTaGCTGATTTCAAAGAGAGCATGGCTGCAGATCCACACTTTGTCA +
Preference number: 6 (lower is better)
Translates to: KGMARNTVRNLYITY*LISKRAWLQIHTLS
Trigger: TGACAAAGTGTGGATCTGCAGCCATGCTCTCTTTGAAATCAGCAAATATGTGATGTACAAGTTCCTGACCGTATTTCTGGCCATCCCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000058.7
ENSMUST00000115459.2