Pregenerated sensors for CATSPERZ (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050623Ensembl transcript IDs: ENSMUST00000057716.6, ENSMUST00000237380.2, ENSMUST00000237586.2, ENSMUST00000237743.2
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GACACGGAGCGGACGTCTCGTCGGCCACTTGAGCTGGAGGTTCACTaGTCCAAAAAGTACAGCCTCTTGTTCCTGCGCTTCCTGATCCCT | + |
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Preference number: 1 (lower is better) Translates to: DTERTSRRPLELEVH*SKKYSLLFLRFLIP Trigger: AGGGATCAGGAAGCGCAGGAACAAGAGGCTGTACTTTTTGGATCAGTGAACCTCCAGCTCAAGTGGCCGACGAGACGTCCGCTCCGTGTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000237743.2 |
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| 3UTR GCA 90 bp | TACAGCCTCTTGTTCCTGCGCTTCCTGATCCCTTCGATGTATCCCTaGAGCTCTTTAGTCATGAAGTGGTTCCTGCCAATCGTGGACCTA | + |
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Preference number: 1 (lower is better) Translates to: YSLLFLRFLIPSMYP*SSLVMKWFLPIVDL Trigger: TAGGTCCACGATTGGCAGGAACCACTTCATGACTAAAGAGCTGCAGGGATACATCGAAGGGATCAGGAAGCGCAGGAACAAGAGGCTGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237743.2 |
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| 3UTR TCA 72 bp | CGGACGTCTCGTCGGCCACTTGAGCTGGAGGTTCACTaGTCCAAAAAGTACAGCCTCTTGTTCCTGCGCTTC | + |
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Preference number: 3 (lower is better) Translates to: RTSRRPLELEVH*SKKYSLLFLRF Trigger: GAAGCGCAGGAACAAGAGGCTGTACTTTTTGGATCAGTGAACCTCCAGCTCAAGTGGCCGACGAGACGTCCG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000237743.2 |
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| 3UTR-3UTR CAA 90 bp | TCACTGATCCAAAAAGTACAGCCTCTTGTTCCTGCGCTTCCTGATCCCTTCGATCAGATGAGGTTGAGCTaGGGTTCGAGGGACCGGAAA | + |
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Preference number: 3 (lower is better) Translates to: SLIQKVQPLVPALPDPFDQMRLS*GSRDRK Trigger: TTTCCGGTCCCTCGAACCCAAGCTCAACCTCATCTG...ATCGAAGGGATCAGGAAGCGCAGGAACAAGAGGCTGTACTTTTTGGATCAGTGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000237743.2 |
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| 3UTR-3UTR CAA 90 bp | CAGCCACGCACTGACTCTGGGACCATGCATAGACTCTTTAATTTCTCTAGGATTTCCATGCAGATGAGGTaGAGCTTGGGTTCGAGGGAC | + |
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Preference number: 3 (lower is better) Translates to: QPRTDSGTMHRLFNFSRISMQMR*SLGSRD Trigger: GTCCCTCGAACCCAAGCTCAACCTCATCTGCATGGA...AATCCTAGAGAAATTAAAGAGTCTATGCATGGTCCCAGAGTCAGTGCGTGGCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237586.2 |
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| 3UTR GCA 72 bp | TTGTTCCTGCGCTTCCTGATCCCTTCGATGTATCCCTaGAGCTCTTTAGTCATGAAGTGGTTCCTGCCAATC | + |
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Preference number: 3 (lower is better) Translates to: LFLRFLIPSMYP*SSLVMKWFLPI Trigger: GATTGGCAGGAACCACTTCATGACTAAAGAGCTGCAGGGATACATCGAAGGGATCAGGAAGCGCAGGAACAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237743.2 |
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| 3UTR CCA 72 bp | CCTTCGATGTATCCCTGCAGCTCTTTAGTCATGAAGTaGTTCCTGCCAATCGTGGACCTATATGTGATGAGG | + |
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Preference number: 3 (lower is better) Translates to: PSMYPCSSLVMK*FLPIVDLYVMR Trigger: CCTCATCACATATAGGTCCACGATTGGCAGGAACCACTTCATGACTAAAGAGCTGCAGGGATACATCGAAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237743.2 |
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| 3UTR CAA 72 bp | CCGGAAAGGACACGGAGCGGACGTCTCGTCGGCCACTaGAGCTGGAGGTTCACTGATCCAAAAAGTACAGCC | + |
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Preference number: 4 (lower is better) Translates to: PERTRSGRLVGH*SWRFTDPKSTA Trigger: GGCTGTACTTTTTGGATCAGTGAACCTCCAGCTCAAGTGGCCGACGAGACGTCCGCTCCGTGTCCTTTCCGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000237743.2 |
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| CDS-3UTR GCA 90 bp | CCTGCGCTTCCTGATCCCTTCGATGTATCCCTGCAGCTCTTTAGTCATGAAGTGTCGTGGTCCTCCCCATaGTCCAAGGACCTGCCATGG | + |
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Preference number: 4 (lower is better) Translates to: PALPDPFDVSLQLFSHEVSWSSP*SKDLPW Trigger: CCATGGCAGGTCCTTGGAGCATGGGGAGGACCACGA...CACTTCATGACTAAAGAGCTGCAGGGATACATCGAAGGGATCAGGAAGCGCAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237743.2 |
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| CDS-3UTR GCA 90 bp | AGCCACGCACTGACTCTGGGACCATGCATAGACTCTTTAATTTCTCTAGGATTCTCGTGGTCCTCCCCATaGTCCAAGGACCTGCCATGG | + |
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Preference number: 4 (lower is better) Translates to: SHALTLGPCIDSLISLGFSWSSP*SKDLPW Trigger: CCATGGCAGGTCCTTGGAGCATGGGGAGGACCACGA...GAATCCTAGAGAAATTAAAGAGTCTATGCATGGTCCCAGAGTCAGTGCGTGGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237586.2 |
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| CDS-3UTR GCA 90 bp | AGCAGCCACGCACTGACTCTGGGACCATGCATAGACTCTTTAATTTCTCTAGGACATGCTCCAAGGACCTaGCATGGCACAGTTCAAGCT | + |
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Preference number: 4 (lower is better) Translates to: SSHALTLGPCIDSLISLGHAPRT*HGTVQA Trigger: AGCTTGAACTGTGCCATGGCAGGTCCTTGGAGCATG...TCCTAGAGAAATTAAAGAGTCTATGCATGGTCCCAGAGTCAGTGCGTGGCTGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237586.2 |
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| CDS-3UTR GCA 90 bp | CCCTTCGATGTATCCCTGCAGCTCTTTAGTCATGAAGTGGTTCCTGCCAATCGTTTCAAGCTCTCGACGTaGTTGCTGCTGGATCTCCTN | + |
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Preference number: 4 (lower is better) Translates to: PFDVSLQLFSHEVVPANRFKLST*LLLDLL Trigger: NAGGAGATCCAGCAGCAAGCACGTCGAGAGCTTGAA...ACGATTGGCAGGAACCACTTCATGACTAAAGAGCTGCAGGGATACATCGAAGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237743.2 |
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| CDS-3UTR GCA 90 bp | TTAATTTCTCTAGGATTCAAATTCCATGCAGATGAGGTTGAGCTTGGGTTCGAGTCGTGGTCCTCCCCATaGTCCAAGGACCTGCCATGG | + |
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Preference number: 4 (lower is better) Translates to: LISLGFKFHADEVELGFESWSSP*SKDLPW Trigger: CCATGGCAGGTCCTTGGAGCATGGGGAGGACCACGA...CTCGAACCCAAGCTCAACCTCATCTGCATGGAATTTGAATCCTAGAGAAATTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000057716.6 ENSMUST00000237380.2 ENSMUST00000237586.2 ENSMUST00000237743.2 |
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| CDS-3UTR CCA 90 bp | TTAATTTCTCTAGGATTCAAATTCCATGCAGATGAGGTTGAGCTTGGGTTCGAGCGACGTGCTTGCTGCTaGATCTCCTCTGGCTCGAGG | + |
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Preference number: 4 (lower is better) Translates to: LISLGFKFHADEVELGFERRACC*ISSGSR Trigger: CCTCGAGCCAGAGGAGATCCAGCAGCAAGCACGTCG...CTCGAACCCAAGCTCAACCTCATCTGCATGGAATTTGAATCCTAGAGAAATTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057716.6 ENSMUST00000237380.2 |
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| CDS-3UTR TCA 90 bp | TTAATTTCTCTAGGATTCAAATTCCATGCAGATGAGGTTGAGCTTGGGTTCGAGGAACTTCAGTCTCCATaGGCTCCATCAGAGGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: LISLGFKFHADEVELGFEELQSP*APSEAE Trigger: CTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTC...CTCGAACCCAAGCTCAACCTCATCTGCATGGAATTTGAATCCTAGAGAAATTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057716.6 ENSMUST00000237380.2 |
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| CDS-3UTR GCA 90 bp | TTAATTTCTCTAGGATTCAAATTCCATGCAGATGAGGTTGAGCTTGGGTTCGAGTTCAAGCTCTCGACGTaGTTGCTGCTGGATCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: LISLGFKFHADEVELGFEFKLST*LLLDLL Trigger: GAGGAGATCCAGCAGCAAGCACGTCGAGAGCTTGAA...CTCGAACCCAAGCTCAACCTCATCTGCATGGAATTTGAATCCTAGAGAAATTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057716.6 ENSMUST00000237380.2 |
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| CDS-3UTR GCA 90 bp | TTAATTTCTCTAGGATTCAAATTCCATGCAGATGAGGTTGAGCTTGGGTTCGAGCATGCTCCAAGGACCTaGCATGGCACAGTTCAAGCT | + |
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Preference number: 4 (lower is better) Translates to: LISLGFKFHADEVELGFEHAPRT*HGTVQA Trigger: AGCTTGAACTGTGCCATGGCAGGTCCTTGGAGCATG...CTCGAACCCAAGCTCAACCTCATCTGCATGGAATTTGAATCCTAGAGAAATTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000057716.6 ENSMUST00000237380.2 ENSMUST00000237586.2 ENSMUST00000237743.2 |
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| CDS-3UTR GCA 90 bp | CAGCCACGCACTGACTCTGGGACCATGCATAGACTCTTTAATTTCTCTAGGATTCCTTCGATGTATCCCTaGAGCTCTTTAGTCATGAAG | + |
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Preference number: 4 (lower is better) Translates to: QPRTDSGTMHRLFNFSRIPSMYP*SSLVMK Trigger: CTTCATGACTAAAGAGCTGCAGGGATACATCGAAGG...AATCCTAGAGAAATTAAAGAGTCTATGCATGGTCCCAGAGTCAGTGCGTGGCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237586.2 |
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| CDS-3UTR GCA 90 bp | TTAATTTCTCTAGGATTCAAATTCCATGCAGATGAGGTTGAGCTTGGGTTCGAGTGGTCTGGCTGTACTTaGGAATCCTGTTTCTTACAG | + |
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Preference number: 4 (lower is better) Translates to: LISLGFKFHADEVELGFEWSGCT*ESCFLQ Trigger: CTGTAAGAAACAGGATTCGCAAGTACAGCCAGACCA...CTCGAACCCAAGCTCAACCTCATCTGCATGGAATTTGAATCCTAGAGAAATTAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057716.6 ENSMUST00000237380.2 |
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| CDS-3UTR GCA 90 bp | TTAATTTCTCTAGGATTCAAATTCCATGCAGATGAGGTTGAGCTTGGGTTCGAGCCTTCGATGTATCCCTaGAGCTCTTTAGTCATGAAG | + |
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Preference number: 4 (lower is better) Translates to: LISLGFKFHADEVELGFEPSMYP*SSLVMK Trigger: CTTCATGACTAAAGAGCTGCAGGGATACATCGAAGG...CTCGAACCCAAGCTCAACCTCATCTGCATGGAATTTGAATCCTAGAGAAATTAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000057716.6 ENSMUST00000237380.2 ENSMUST00000237586.2 |
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| CDS-3UTR CCA 90 bp | TTAATTTCTCTAGGATTCAAATTCCATGCAGATGAGGTTGAGCTTGGGTTCGAGTCTTTAGTCATGAAGTaGTTCCTGCCAATCGTGGAC | + |
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Preference number: 4 (lower is better) Translates to: LISLGFKFHADEVELGFESLVMK*FLPIVD Trigger: GTCCACGATTGGCAGGAACCACTTCATGACTAAAGA...CTCGAACCCAAGCTCAACCTCATCTGCATGGAATTTGAATCCTAGAGAAATTAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000057716.6 ENSMUST00000237380.2 ENSMUST00000237586.2 |
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| CDS-3UTR TCA 90 bp | TTAATTTCTCTAGGATTCAAATTCCATGCAGATGAGGTTGAGCTTGGGTTCGAGGTGGCTTCCATAGGCTaGATATTAGTGATTCTGAAG | + |
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Preference number: 4 (lower is better) Translates to: LISLGFKFHADEVELGFEVASIG*ILVILK Trigger: CTTCAGAATCACTAATATTCAGCCTATGGAAGCCAC...CTCGAACCCAAGCTCAACCTCATCTGCATGGAATTTGAATCCTAGAGAAATTAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057716.6 ENSMUST00000237380.2 |
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| CDS-3UTR GCA 90 bp | TTAATTTCTCTAGGATTCAAATTCCATGCAGATGAGGTTGAGCTTGGGTTCGAGTGTTTCTTACAGATTTaGCCTCTTCGTCGAAGTCCT | + |
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Preference number: 4 (lower is better) Translates to: LISLGFKFHADEVELGFECFLQI*PLRRSP Trigger: AGGACTTCGACGAAGAGGGCAAATCTGTAAGAAACA...CTCGAACCCAAGCTCAACCTCATCTGCATGGAATTTGAATCCTAGAGAAATTAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057716.6 ENSMUST00000237380.2 |
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| CDS GCA 90 bp | CCCATGCTCCAAGGACCTGCCATGGCACAGTTCAAGCTCTCGACGTaGTTGCTGCTGGATCTCCTCTGGCTCGAGGTTGAGGCTGTCCCT | + |
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Preference number: 5 (lower is better) Translates to: PMLQGPAMAQFKLST*LLLDLLWLEVEAVP Trigger: AGGGACAGCCTCAACCTCGAGCCAGAGGAGATCCAGCAGCAAGCACGTCGAGAGCTTGAACTGTGCCATGGCAGGTCCTTGGAGCATGGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057716.6 ENSMUST00000237380.2 |
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| CDS CCA 90 bp | GCTCCATCAGAGGCAGAGGCAGCTAAGGAGGTCTCAGATTCTTCGTaGTCCTCCCCATGCTCCAAGGACCTGCCATGGCACAGTTCAAGC | + |
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Preference number: 5 (lower is better) Translates to: APSEAEAAKEVSDSS*SSPCSKDLPWHSSS Trigger: GCTTGAACTGTGCCATGGCAGGTCCTTGGAGCATGGGGAGGACCACGAAGAATCTGAGACCTCCTTAGCTGCCTCTGCCTCTGATGGAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237743.2 |
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| CDS CCA 90 bp | CTGCCAATCGTGGACCTATATGCTAAGGAGGTCTCAGATTCTTCGTaGTCCTCCCCATGCTCCAAGGACCTGCCATGGCACAGTTCAAGC | + |
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Preference number: 5 (lower is better) Translates to: LPIVDLYAKEVSDSS*SSPCSKDLPWHSSS Trigger: GCTTGAACTGTGCCATGGCAGGTCCTTGGAGCATGGGGAGGACCACGAAGAATCTGAGACCTCCTTAGCATATAGGTCCACGATTGGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237586.2 |
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| CDS CCA 90 bp | AGTGATTCTGAAGTAGACGATGCTAAGGAGGTCTCAGATTCTTCGTaGTCCTCCCCATGCTCCAAGGACCTGCCATGGCACAGTTCAAGC | + |
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Preference number: 5 (lower is better) Translates to: SDSEVDDAKEVSDSS*SSPCSKDLPWHSSS Trigger: GCTTGAACTGTGCCATGGCAGGTCCTTGGAGCATGGGGAGGACCACGAAGAATCTGAGACCTCCTTAGCATCGTCTACTTCAGAATCACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057716.6 ENSMUST00000237380.2 |
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| CDS CCA 90 bp | TTCCTGATCCCTTCGATGTATCCCTGCAGCTCTTTAGTCATGAAGTaGTTCCTGCCAATCGTGGACCTATATGCTAAGGAGGTCTCAGAT | + |
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Preference number: 5 (lower is better) Translates to: FLIPSMYPCSSLVMK*FLPIVDLYAKEVSD Trigger: ATCTGAGACCTCCTTAGCATATAGGTCCACGATTGGCAGGAACCACTTCATGACTAAAGAGCTGCAGGGATACATCGAAGGGATCAGGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237586.2 |
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| CDS-3UTR CAA 90 bp | AGCAGCCACGCACTGACTCTGGGACCATGCATAGACTCTTTAATTTCTCTAGGAAAAAAGTACAGCCTCTaGTTCCTGCGCTTCCTGATC | + |
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Preference number: 5 (lower is better) Translates to: SSHALTLGPCIDSLISLGKKYSL*FLRFLI Trigger: GATCAGGAAGCGCAGGAACAAGAGGCTGTACTTTTT...TCCTAGAGAAATTAAAGAGTCTATGCATGGTCCCAGAGTCAGTGCGTGGCTGCT 48% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000237586.2 |
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| CDS-3UTR CAA 90 bp | TTAATTTCTCTAGGATTCAAATTCCATGCAGATGAGGTTGAGCTTGGGTTCGAGAAAAAGTACAGCCTCTaGTTCCTGCGCTTCCTGATC | + |
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Preference number: 5 (lower is better) Translates to: LISLGFKFHADEVELGFEKKYSL*FLRFLI Trigger: GATCAGGAAGCGCAGGAACAAGAGGCTGTACTTTTT...CTCGAACCCAAGCTCAACCTCATCTGCATGGAATTTGAATCCTAGAGAAATTAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000057716.6 ENSMUST00000237380.2 ENSMUST00000237586.2 |
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| CDS CCA 72 bp | GAGGCAGAGGCAGCTAAGGAGGTCTCAGATTCTTCGTaGTCCTCCCCATGCTCCAAGGACCTGCCATGGCAC | + |
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Preference number: 6 (lower is better) Translates to: EAEAAKEVSDSS*SSPCSKDLPWH Trigger: GTGCCATGGCAGGTCCTTGGAGCATGGGGAGGACCACGAAGAATCTGAGACCTCCTTAGCTGCCTCTGCCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237743.2 |
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| CDS GCA 72 bp | CAAGGACCTGCCATGGCACAGTTCAAGCTCTCGACGTaGTTGCTGCTGGATCTCCTCTGGCTCGAGGTTGAG | + |
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Preference number: 6 (lower is better) Translates to: QGPAMAQFKLST*LLLDLLWLEVE Trigger: CTCAACCTCGAGCCAGAGGAGATCCAGCAGCAAGCACGTCGAGAGCTTGAACTGTGCCATGGCAGGTCCTTG 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057716.6 ENSMUST00000237380.2 |
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| CDS CCA 72 bp | CCATGGCACAGTTCAAGCTCTCGACGTGCTTGCTGCTaGATCTCCTCTGGCTCGAGGTTGAGGCTGTCCCTA | + |
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Preference number: 6 (lower is better) Translates to: PWHSSSSRRACC*ISSGSRLRLSL Trigger: TAGGGACAGCCTCAACCTCGAGCCAGAGGAGATCCAGCAGCAAGCACGTCGAGAGCTTGAACTGTGCCATGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057716.6 ENSMUST00000237380.2 |
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| CDS CAA 90 bp | ATGCTCCAAGGACCTGCCATGGCACAGTTCAAGCTCTCGACGTGCTaGCTGCTGGATCTCCTCTGGCTCGAGGTTGAGGCTGTCCCTAAT | + |
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Preference number: 6 (lower is better) Translates to: MLQGPAMAQFKLSTC*LLDLLWLEVEAVPN Trigger: ATTAGGGACAGCCTCAACCTCGAGCCAGAGGAGATCCAGCAGCAAGCACGTCGAGAGCTTGAACTGTGCCATGGCAGGTCCTTGGAGCAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057716.6 ENSMUST00000237380.2 |
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| CDS GCA 72 bp | GCTAAGGAGGTCTCAGATTCTTCGTGGTCCTCCCCATaGTCCAAGGACCTGCCATGGCACAGTTCAAGCTCT | + |
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Preference number: 6 (lower is better) Translates to: AKEVSDSSWSSP*SKDLPWHSSSS Trigger: AGAGCTTGAACTGTGCCATGGCAGGTCCTTGGAGCATGGGGAGGACCACGAAGAATCTGAGACCTCCTTAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000057716.6 ENSMUST00000237380.2 ENSMUST00000237586.2 ENSMUST00000237743.2 |
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| CDS CCA 72 bp | GAAGTAGACGATGCTAAGGAGGTCTCAGATTCTTCGTaGTCCTCCCCATGCTCCAAGGACCTGCCATGGCAC | + |
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Preference number: 6 (lower is better) Translates to: EVDDAKEVSDSS*SSPCSKDLPWH Trigger: GTGCCATGGCAGGTCCTTGGAGCATGGGGAGGACCACGAAGAATCTGAGACCTCCTTAGCATCGTCTACTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057716.6 ENSMUST00000237380.2 |
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| CDS CCA 72 bp | GTGGACCTATATGCTAAGGAGGTCTCAGATTCTTCGTaGTCCTCCCCATGCTCCAAGGACCTGCCATGGCAC | + |
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Preference number: 6 (lower is better) Translates to: VDLYAKEVSDSS*SSPCSKDLPWH Trigger: GTGCCATGGCAGGTCCTTGGAGCATGGGGAGGACCACGAAGAATCTGAGACCTCCTTAGCATATAGGTCCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237586.2 |
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| CDS CAA 72 bp | CGACGTGCTTGCTGCTGGATCTCCTCTGGCTCGAGGTaGAGGCTGTCCCTAATAGAAATGGTCTGGCTGTAC | + |
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Preference number: 6 (lower is better) Translates to: RRACCWISSGSR*RLSLIEMVWLY Trigger: GTACAGCCAGACCATTTCTATTAGGGACAGCCTCAACCTCGAGCCAGAGGAGATCCAGCAGCAAGCACGTCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057716.6 ENSMUST00000237380.2 |
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| CDS GCA 72 bp | TCTGGCTGTACTTGCGAATCCTGTTTCTTACAGATTTaGCCTCTTCGTCGAAGTCCTCGCAGACGTCGGATA | + |
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Preference number: 6 (lower is better) Translates to: SGCTCESCFLQI*PLRRSPRRRRI Trigger: TATCCGACGTCTGCGAGGACTTCGACGAAGAGGGCAAATCTGTAAGAAACAGGATTCGCAAGTACAGCCAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057716.6 ENSMUST00000237380.2 |
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| CDS CCA 72 bp | CCTTCGATGTATCCCTGCAGCTCTTTAGTCATGAAGTaGTTCCTGCCAATCGTGGACCTATATGCTAAGGAG | + |
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Preference number: 6 (lower is better) Translates to: PSMYPCSSLVMK*FLPIVDLYAKE Trigger: CTCCTTAGCATATAGGTCCACGATTGGCAGGAACCACTTCATGACTAAAGAGCTGCAGGGATACATCGAAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237586.2 |
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| CDS CAA 72 bp | TTGAGGCTGTCCCTAATAGAAATGGTCTGGCTGTACTaGCGAATCCTGTTTCTTACAGATTTGCCCTCTTCG | + |
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Preference number: 6 (lower is better) Translates to: LRLSLIEMVWLY*RILFLTDLPSS Trigger: CGAAGAGGGCAAATCTGTAAGAAACAGGATTCGCAAGTACAGCCAGACCATTTCTATTAGGGACAGCCTCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057716.6 ENSMUST00000237380.2 |
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