RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CATSPERG2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000049123

Ensembl transcript IDs: ENSMUST00000061193.4, ENSMUST00000207115.2, ENSMUST00000208371.2, ENSMUST00000208607.2, ENSMUST00000209126.2

Found 253 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGAGGTGGCAGGCTGCATTCCCATGAGGAGAGGCCTAAGGGTTCATaGGGAAGAGTACAGACCAGGGACTCAGGCCACCTATGCTGTCTT +
Preference number: 1 (lower is better)
Translates to: GGGRLHSHEERPKGS*GRVQTRDSGHLCCL
Trigger: AAGACAGCATAGGTGGCCTGAGTCCCTGGTCTGTACTCTTCCTCATGAACCCTTAGGCCTCTCCTCATGGGAATGCAGCCTGCCACCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
3UTR TCA 90 bp CCAGCGGGCTGTTGTAACGGAAGATTTCTTCCTCCGTGTAGTCTCTaGTGGTGTTCAGTGTGCGACCACCACCCACCACCTTCAGCACAT +
Preference number: 1 (lower is better)
Translates to: PAGCCNGRFLPPCSL*WCSVCDHHPPPSAH
Trigger: ATGTGCTGAAGGTGGTGGGTGGTGGTCGCACACTGAACACCATCAGAGACTACACGGAGGAAGAAATCTTCCGTTACAACAGCCCGCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
3UTR GCA 90 bp TGCGACCACCACCCACCACCTTCAGCACATAACTGCCCAAGAAACTaGCAGAGTCGCCAGTCACCAAGTCTTGGACTAAGAAGAAGGGCT +
Preference number: 1 (lower is better)
Translates to: CDHHPPPSAHNCPRN*QSRQSPSLGLRRRA
Trigger: AGCCCTTCTTCTTAGTCCAAGACTTGGTGACTGGCGACTCTGGCAGTTTCTTGGGCAGTTATGTGCTGAAGGTGGTGGGTGGTGGTCGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
3UTR GCA 90 bp TGGTGTTCAGTGTGCGACCACCACCCACCACCTTCAGCACATAACTaGCCAAGAAACTGCCAGAGTCGCCAGTCACCAAGTCTTGGACTA +
Preference number: 1 (lower is better)
Translates to: WCSVCDHHPPPSAHN*PRNCQSRQSPSLGL
Trigger: TAGTCCAAGACTTGGTGACTGGCGACTCTGGCAGTTTCTTGGGCAGTTATGTGCTGAAGGTGGTGGGTGGTGGTCGCACACTGAACACCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
3UTR GCA 90 bp CATGAACATTCTAGCAAACCAGAAAGTCCTGGGGAGGTGGCAGGCTaGATTCCCATGAGGAGAGGCCTAAGGGTTCATGAGGAAGAGTAC +
Preference number: 1 (lower is better)
Translates to: HEHSSKPESPGEVAG*IPMRRGLRVHEEEY
Trigger: GTACTCTTCCTCATGAACCCTTAGGCCTCTCCTCATGGGAATGCAGCCTGCCACCTCCCCAGGACTTTCTGGTTTGCTAGAATGTTCATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
3UTR GCA 90 bp TGTCACAGCAATTGCCAGCTTCTTATCCACATTAATAGTGGGTCCTaGAGGGTTGGGGTGTGGGGCTTGATGCCTGATACCTACATCCCA +
Preference number: 1 (lower is better)
Translates to: CHSNCQLLIHINSGS*RVGVWGLMPDTYIP
Trigger: TGGGATGTAGGTATCAGGCATCAAGCCCCACACCCCAACCCTGCAGGACCCACTATTAATGTGGATAAGAAGCTGGCAATTGCTGTGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
3UTR CCA 90 bp GACATCAAAGGCCAAGCGCTTGCCAGGCGGACAGCCGATGAATATTaGTACCACTTTGAAACCTTGAATAATTCCCCCAAGGTACGTGCG +
Preference number: 1 (lower is better)
Translates to: DIKGQALARRTADEY*YHFETLNNSPKVRA
Trigger: CGCACGTACCTTGGGGGAATTATTCAAGGTTTCAAAGTGGTACCAATATTCATCGGCTGTCCGCCTGGCAAGCGCTTGGCCTTTGATGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
3UTR CCA 90 bp CCAGATGAGGCTATTCGTTCTATGCAGGCCCATATAAAGTCAAAGTaGGTTGAGAGCAGAAATAGTTCTCAGCACCTAAGGGTGGGGACC +
Preference number: 1 (lower is better)
Translates to: PDEAIRSMQAHIKSK*VESRNSSQHLRVGT
Trigger: GGTCCCCACCCTTAGGTGCTGAGAACTATTTCTGCTCTCAACCCACTTTGACTTTATATGGGCCTGCATAGAACGAATAGCCTCATCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
3UTR CCA 90 bp AATCTGAGAGAAGGGATGGAACACACAGTCGCGAAAGAGGAAGCATaGCATCTCGGCGTCTTTAATCACACAGTCGAAATAGTGCTTGTT +
Preference number: 1 (lower is better)
Translates to: NLREGMEHTVAKEEA*HLGVFNHTVEIVLV
Trigger: AACAAGCACTATTTCGACTGTGTGATTAAAGACGCCGAGATGCCATGCTTCCTCTTTCGCGACTGTGTGTTCCATCCCTTCTCTCAGATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
3UTR-3UTR CCA 90 bp CACTATGTGAGGCCACACGAGGCAGAACAGGATGTAGAAGACAACCAGGGCTATCACAGCCACCAACTGTaGACTGGGGTCCCCAAGGGA +
Preference number: 2 (lower is better)
Translates to: HYVRPHEAEQDVEDNQGYHSHQL*TGVPKG
Trigger: TCCCTTGGGGACCCCAGTCCACAGTTGGTGGCTGTG...ATAGCCCTGGTTGTCTTCTACATCCTGTTCTGCCTCGTGTGGCCTCACATAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208371.2
3UTR-3UTR TCA 90 bp GTCGGCTCTCTCTTTAGATCTCATGAGGCCTGGGGATCAAACCCAGGTTGTCAGGGACGTGAGCCTTTCTaGGGACTCGGGACTGATTCT +
Preference number: 2 (lower is better)
Translates to: VGSLFRSHEAWGSNPGCQGREPF*GLGTDS
Trigger: AGAATCAGTCCCGAGTCCTCAGAAAGGCTCACGTCC...CTGACAACCTGGGTTTGATCCCCAGGCCTCATGAGATCTAAAGAGAGAGCCGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
3UTR-3UTR CCA 90 bp CACAGAGTCGGCTCTCTCTTTAGATCTCATGAGGCCTGGGGATCAAACCCAGGTCAAACCAGAAAGTCCTaGGGAGGTGGCAGGCTGCAT +
Preference number: 2 (lower is better)
Translates to: HRVGSLFRSHEAWGSNPGQTRKS*GGGRLH
Trigger: ATGCAGCCTGCCACCTCCCCAGGACTTTCTGGTTTG...ACCTGGGTTTGATCCCCAGGCCTCATGAGATCTAAAGAGAGAGCCGACTCTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
3UTR-3UTR CCA 90 bp TCCTCGGTGGTCCTTTCGACCTTTGTTTTCCAGATGAGGCTATTCGTTCTATGCTGGGTCCTGCAGGGTTaGGGTGTGGGGCTTGATGCC +
Preference number: 2 (lower is better)
Translates to: SSVVLSTFVFQMRLFVLCWVLQG*GVGLDA
Trigger: GGCATCAAGCCCCACACCCCAACCCTGCAGGACCCA...GCATAGAACGAATAGCCTCATCTGGAAAACAAAGGTCGAAAGGACCACCGAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
3UTR-3UTR TCA 90 bp AGACCCAGGCCTTCACTATGTGAGGCCACACGAGGCAGAACAGGATGTAGAAGACTGAGTCACAGTTACTaGAAGGCACTCAGGATCCGC +
Preference number: 2 (lower is better)
Translates to: RPRPSLCEATRGRTGCRRLSHSY*KALRIR
Trigger: GCGGATCCTGAGTGCCTTTCAGTAACTGTGACTCAG...TCTTCTACATCCTGTTCTGCCTCGTGTGGCCTCACATAGTGAAGGCCTGGGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
3UTR-3UTR GCA 90 bp GACCAGACCCACCAACTGTGGACTGGGGTCCCCAAGGGATTACGTGTCCAGCGGGAGAGCTCCTTTATCTaGTGTGCCATCTTGAAAATA +
Preference number: 2 (lower is better)
Translates to: DQTHQLWTGVPKGLRVQRESSFI*CAILKI
Trigger: TATTTTCAAGATGGCACAGCAGATAAAGGAGCTCTC...CCGCTGGACACGTAATCCCTTGGGGACCCCAGTCCACAGTTGGTGGGTCTGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
3UTR CAA 90 bp CCAAGGTACGTGCGCTGGATGCAATTCCCAGGAGCGCCCAAGACCTaGAGCATCATAGAAGTCTTCTTGATGTTACGTCCAATCATGCCC +
Preference number: 2 (lower is better)
Translates to: PRYVRWMQFPGAPKT*SIIEVFLMLRPIMP
Trigger: GGGCATGATTGGACGTAACATCAAGAAGACTTCTATGATGCTCAAGGTCTTGGGCGCTCCTGGGAATTGCATCCAGCGCACGTACCTTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
3UTR-3UTR CCA 90 bp AAGACAACCAGGGCTATAAAGAAGCTGGTAGACACCATAACAATGAAGGAGGTCCAGACCCACCAACTGTaGACTGGGGTCCCCAAGGGA +
Preference number: 2 (lower is better)
Translates to: KTTRAIKKLVDTITMKEVQTHQL*TGVPKG
Trigger: TCCCTTGGGGACCCCAGTCCACAGTTGGTGGGTCTG...GACCTCCTTCATTGTTATGGTGTCTACCAGCTTCTTTATAGCCCTGGTTGTCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
3UTR-3UTR GCA 90 bp CACAGAGTCGGCTCTCTCTTTAGATCTCATGAGGCCTGGGGATCAAACCCAGGTTGTTACGTCCAATCATaGCCTGTTCAGAGCATCTCT +
Preference number: 2 (lower is better)
Translates to: HRVGSLFRSHEAWGSNPGCYVQS*PVQSIS
Trigger: AGAGATGCTCTGAACAGGGCATGATTGGACGTAACA...ACCTGGGTTTGATCCCCAGGCCTCATGAGATCTAAAGAGAGAGCCGACTCTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
3UTR-3UTR CCA 90 bp GCAGAACAGGATGTAGAAGACAACCAGGGCTATAAAGAAGCTGGTAGACACCATCAAACCAGAAAGTCCTaGGGAGGTGGCAGGCTGCAT +
Preference number: 2 (lower is better)
Translates to: AEQDVEDNQGYKEAGRHHQTRKS*GGGRLH
Trigger: ATGCAGCCTGCCACCTCCCCAGGACTTTCTGGTTTG...ATGGTGTCTACCAGCTTCTTTATAGCCCTGGTTGTCTTCTACATCCTGTTCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
3UTR-3UTR CCA 90 bp ACAAGTGAGGGAGGGCAAAATGGCCAGGACAGGAGGGCACTAAATCTGAGAGAAGCGAAAGAGGAAGCATaGCATCTCGGCGTCTTTAAT +
Preference number: 2 (lower is better)
Translates to: TSEGGQNGQDRRALNLREAKEEA*HLGVFN
Trigger: ATTAAAGACGCCGAGATGCCATGCTTCCTCTTTCGC...TTCTCTCAGATTTAGTGCCCTCCTGTCCTGGCCATTTTGCCCTCCCTCACTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
3UTR-3UTR CCA 90 bp GGTCCCCAAGGGATTACGTGTCCAGCGGGCTGTTGTAACGGAAGATTTCTTCCTACTAAGAAGAAGGGCTaGAATACTGTGGGTTGGGAA +
Preference number: 2 (lower is better)
Translates to: GPQGITCPAGCCNGRFLPTKKKG*NTVGWE
Trigger: TTCCCAACCCACAGTATTCCAGCCCTTCTTCTTAGT...AGGAAGAAATCTTCCGTTACAACAGCCCGCTGGACACGTAATCCCTTGGGGACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
3UTR-3UTR TCA 90 bp TCCTCAAGGCCAGTGTTGAGGTCAGAGGACAGCTTCACAGAGTCGGCTCTCTCTGGCTTTATTAGGGTCTaGATGAGACATGAACATTCT +
Preference number: 2 (lower is better)
Translates to: SSRPVLRSEDSFTESALSGFIRV*MRHEHS
Trigger: AGAATGTTCATGTCTCATTCAGACCCTAATAAAGCC...AGAGAGAGCCGACTCTGTGAAGCTGTCCTCTGACCTCAACACTGGCCTTGAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
3UTR-3UTR CCA 90 bp GTGCTATTGTCTACACCTCTATTGCTCACTAACAACTTGAAGAAGAACTCAGGTTGGGGACCTAGTGGGTaGGGCAGGATTGTGGAACCC +
Preference number: 2 (lower is better)
Translates to: VLLSTPLLLTNNLKKNSGWGPSG*GRIVEP
Trigger: GGGTTCCACAATCCTGCCCCACCCACTAGGTCCCCA...ACCTGAGTTCTTCTTCAAGTTGTTAGTGAGCAATAGAGGTGTAGACAATAGCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
3UTR-3UTR TCA 90 bp AGAGTCGGCTCTCTCTTTAGATCTCATGAGGCCTGGGGATCAAACCCAGGTTGTTTAAGAAGGACATCCTaGGTCACAGTTACTGAAAGG +
Preference number: 2 (lower is better)
Translates to: RVGSLFRSHEAWGSNPGCLRRTS*VTVTER
Trigger: CCTTTCAGTAACTGTGACTCAGGATGTCCTTCTTAA...ACAACCTGGGTTTGATCCCCAGGCCTCATGAGATCTAAAGAGAGAGCCGACTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
3UTR-3UTR GCA 90 bp CTTCACAGAGTCGGCTCTCTCTTTAGATCTCATGAGGCCTGGGGATCAAACCCAGAGAGCTCCTTTATCTaGTGTGCCATCTTGAAAATA +
Preference number: 2 (lower is better)
Translates to: LHRVGSLFRSHEAWGSNPESSFI*CAILKI
Trigger: TATTTTCAAGATGGCACAGCAGATAAAGGAGCTCTC...TGGGTTTGATCCCCAGGCCTCATGAGATCTAAAGAGAGAGCCGACTCTGTGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
3UTR CAA 90 bp CAATTCCCAGGAGCGCCCAAGACCTTGAGCATCATAGAAGTCTTCTaGATGTTACGTCCAATCATGCCCTGTTCAGAGCATCTCTTTTTA +
Preference number: 2 (lower is better)
Translates to: QFPGAPKTLSIIEVF*MLRPIMPCSEHLFL
Trigger: TAAAAAGAGATGCTCTGAACAGGGCATGATTGGACGTAACATCAAGAAGACTTCTATGATGCTCAAGGTCTTGGGCGCTCCTGGGAATTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
3UTR-3UTR CCA 90 bp GTGCTATTGTCTACACCTCTATTGCTCACTAACAACTTGAAGAAGAACTCAGGTGGTGGGGCAGGATTGTaGAACCCTAGGCATTACTGT +
Preference number: 2 (lower is better)
Translates to: VLLSTPLLLTNNLKKNSGGGAGL*NPRHYC
Trigger: ACAGTAATGCCTAGGGTTCCACAATCCTGCCCCACC...ACCTGAGTTCTTCTTCAAGTTGTTAGTGAGCAATAGAGGTGTAGACAATAGCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
3UTR-3UTR TCA 90 bp TGTCTTAGCTTGAACATTGTCCTCTTTCGAACCAGCTCTGGAGGGACCCTCAAAGGCTTTATTAGGGTCTaGATGAGACATGAACATTCT +
Preference number: 2 (lower is better)
Translates to: CLSLNIVLFRTSSGGTLKGFIRV*MRHEHS
Trigger: AGAATGTTCATGTCTCATTCAGACCCTAATAAAGCC...TTTGAGGGTCCCTCCAGAGCTGGTTCGAAAGAGGACAATGTTCAAGCTAAGACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
3UTR-3UTR TCA 90 bp GCCATCTTGAAAATAAAAGATTCTGACATTCTGACAGTTAACTACAGCTGTGCTGGACGTGAGCCTTTCTaGGGACTCGGGACTGATTCT +
Preference number: 2 (lower is better)
Translates to: AILKIKDSDILTVNYSCAGREPF*GLGTDS
Trigger: AGAATCAGTCCCGAGTCCTCAGAAAGGCTCACGTCC...AGCACAGCTGTAGTTAACTGTCAGAATGTCAGAATCTTTTATTTTCAAGATGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
3UTR-3UTR TCA 90 bp GCCATCTTGAAAATAAAAGATTCTGACATTCTGACAGTTAACTACAGCTGTGCTTTGGGGTGTGGGGCTTaGTGCCTGATACCTACATCC +
Preference number: 2 (lower is better)
Translates to: AILKIKDSDILTVNYSCALGCGA*CLIPTS
Trigger: GGATGTAGGTATCAGGCATCAAGCCCCACACCCCAA...AGCACAGCTGTAGTTAACTGTCAGAATGTCAGAATCTTTTATTTTCAAGATGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
3UTR CAA 90 bp ACCCAGGTTGTCAGGCTTGAGAGCTCCTTTATCTGCTGTGCCATCTaGAAAATAAAAGATTCTGACATTCTGACAGTTAACTACAGCTGT +
Preference number: 2 (lower is better)
Translates to: TQVVRLESSFICCAI*KIKDSDILTVNYSC
Trigger: ACAGCTGTAGTTAACTGTCAGAATGTCAGAATCTTTTATTTTCAAGATGGCACAGCAGATAAAGGAGCTCTCAAGCCTGACAACCTGGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
3UTR TCA 72 bp TCTTTCGAACCAGCTCTGGAGGGACCCTCAAAACTGTaGGACTGGAGGCTGAAGCCCGCAGTAGAGGAGGCA +
Preference number: 3 (lower is better)
Translates to: SFEPALEGPSKL*DWRLKPAVEEA
Trigger: TGCCTCCTCTACTGCGGGCTTCAGCCTCCAGTCTCACAGTTTTGAGGGTCCCTCCAGAGCTGGTTCGAAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
3UTR-3UTR CAA 90 bp AGAGGCCTAAGGGTTCATGAGGAAGAGTACAGACCAGGGACTCAGGCCACCTATAAAGTGCTGGTGCTGTaGTGGGAGGGGACAAGTGAG +
Preference number: 3 (lower is better)
Translates to: RGLRVHEEEYRPGTQATYKVLVL*WEGTSE
Trigger: CTCACTTGTCCCCTCCCACAACAGCACCAGCACTTT...ATAGGTGGCCTGAGTCCCTGGTCTGTACTCTTCCTCATGAACCCTTAGGCCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
3UTR TCA 72 bp AGACCAGGGACTCAGGCCACCTATGCTGTCTTAGCTTaGACATTGTCCTCTTTCGAACCAGCTCTGGAGGGA +
Preference number: 3 (lower is better)
Translates to: RPGTQATYAVLA*TLSSFEPALEG
Trigger: TCCCTCCAGAGCTGGTTCGAAAGAGGACAATGTTCAAGCTAAGACAGCATAGGTGGCCTGAGTCCCTGGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
3UTR-3UTR CAA 90 bp TGTCTTAGCTTGAACATTGTCCTCTTTCGAACCAGCTCTGGAGGGACCCTCAAATCCTCAAGGCCAGTGTaGAGGTCAGAGGACAGCTTC +
Preference number: 3 (lower is better)
Translates to: CLSLNIVLFRTSSGGTLKSSRPV*RSEDSF
Trigger: GAAGCTGTCCTCTGACCTCAACACTGGCCTTGAGGA...TTTGAGGGTCCCTCCAGAGCTGGTTCGAAAGAGGACAATGTTCAAGCTAAGACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
3UTR TCA 72 bp CTGTGCTGGTACAAACCAAGCGGACGTGAGCCTTTCTaGGGACTCGGGACTGATTCTGAAAGGAGGCTTTAT +
Preference number: 3 (lower is better)
Translates to: LCWYKPSGREPF*GLGTDSERRLY
Trigger: ATAAAGCCTCCTTTCAGAATCAGTCCCGAGTCCTCAGAAAGGCTCACGTCCGCTTGGTTTGTACCAGCACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
3UTR TCA 72 bp TGTTGTAACGGAAGATTTCTTCCTCCGTGTAGTCTCTaGTGGTGTTCAGTGTGCGACCACCACCCACCACCT +
Preference number: 3 (lower is better)
Translates to: CCNGRFLPPCSL*WCSVCDHHPPP
Trigger: AGGTGGTGGGTGGTGGTCGCACACTGAACACCATCAGAGACTACACGGAGGAAGAAATCTTCCGTTACAACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
3UTR GCA 72 bp AATTGCCAGCTTCTTATCCACATTAATAGTGGGTCCTaGAGGGTTGGGGTGTGGGGCTTGATGCCTGATACC +
Preference number: 3 (lower is better)
Translates to: NCQLLIHINSGS*RVGVWGLMPDT
Trigger: GGTATCAGGCATCAAGCCCCACACCCCAACCCTGCAGGACCCACTATTAATGTGGATAAGAAGCTGGCAATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
3UTR-3UTR CAA 90 bp GACAACCAGGGCTATAAAGAAGCTGGTAGACACCATAACAATGAAGGAGGTCCGCCCAGGTTGTCAGGCTaGAGAGCTCCTTTATCTGCT +
Preference number: 3 (lower is better)
Translates to: DNQGYKEAGRHHNNEGGPPRLSG*RAPLSA
Trigger: AGCAGATAAAGGAGCTCTCAAGCCTGACAACCTGGG...CGGACCTCCTTCATTGTTATGGTGTCTACCAGCTTCTTTATAGCCCTGGTTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
3UTR TCA 72 bp CATGAGGCCTGGGGATCAAACCCAGGTTGTCAGGCTTaGGAGCTCCTTTATCTGCTGTGCCATCTTGAAAAT +
Preference number: 3 (lower is better)
Translates to: HEAWGSNPGCQA*ELLYLLCHLEN
Trigger: ATTTTCAAGATGGCACAGCAGATAAAGGAGCTCTCAAGCCTGACAACCTGGGTTTGATCCCCAGGCCTCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
3UTR-3UTR CAA 90 bp TTAGATCTCATGAGGCCTGGGGATCAAACCCAGGTTGTCAGGCTTGAGAGCTCCCTATTGTCACAGCAATaGCCAGCTTCTTATCCACAT +
Preference number: 3 (lower is better)
Translates to: LDLMRPGDQTQVVRLESSLLSQQ*PASYPH
Trigger: ATGTGGATAAGAAGCTGGCAATTGCTGTGACAATAG...GGAGCTCTCAAGCCTGACAACCTGGGTTTGATCCCCAGGCCTCATGAGATCTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
3UTR-3UTR CAA 90 bp CTCAAGGCCAGTGTTGAGGTCAGAGGACAGCTTCACAGAGTCGGCTCTCTCTTTTCTATGACTTTAATCTaGTTGATCACTGCGTTGCGA +
Preference number: 3 (lower is better)
Translates to: LKASVEVRGQLHRVGSLFSMTLI*LITALR
Trigger: TCGCAACGCAGTGATCAACAAGATTAAAGTCATAGA...AAAGAGAGAGCCGACTCTGTGAAGCTGTCCTCTGACCTCAACACTGGCCTTGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
3UTR-3UTR CAA 90 bp TGTCTTAGCTTGAACATTGTCCTCTTTCGAACCAGCTCTGGAGGGACCCTCAAAAGGTGGGTAGATGCTTaGGGGGATGATGTCATAACA +
Preference number: 3 (lower is better)
Translates to: CLSLNIVLFRTSSGGTLKRWVDA*GDDVIT
Trigger: TGTTATGACATCATCCCCCAAAGCATCTACCCACCT...TTTGAGGGTCCCTCCAGAGCTGGTTCGAAAGAGGACAATGTTCAAGCTAAGACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
3UTR TCA 72 bp TGTCCTCGGTGGTCCTTTCGACCTTTGTTTTCCAGATaGGGCTATTCGTTCTATGCAGGCCCATATAAAGTC +
Preference number: 3 (lower is better)
Translates to: CPRWSFRPLFSR*GYSFYAGPYKV
Trigger: GACTTTATATGGGCCTGCATAGAACGAATAGCCTCATCTGGAAAACAAAGGTCGAAAGGACCACCGAGGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
3UTR-3UTR CAA 90 bp AGGTCAGAGGACAGCTTCACAGAGTCGGCTCTCTCTTTAGATCTCATGAGGCCTATCTGCTGTGCCATCTaGAAAATAAAAGATTCTGAC +
Preference number: 3 (lower is better)
Translates to: RSEDSFTESALSLDLMRPICCAI*KIKDSD
Trigger: GTCAGAATCTTTTATTTTCAAGATGGCACAGCAGAT...AGGCCTCATGAGATCTAAAGAGAGAGCCGACTCTGTGAAGCTGTCCTCTGACCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
3UTR TCA 72 bp GTTGCGATTAAGAAGGACATCCTGAGTCACAGTTACTaGAAGGCACTCAGGATCCGCTATTGTCACAGCAAT +
Preference number: 3 (lower is better)
Translates to: VAIKKDILSHSY*KALRIRYCHSN
Trigger: ATTGCTGTGACAATAGCGGATCCTGAGTGCCTTTCAGTAACTGTGACTCAGGATGTCCTTCTTAATCGCAAC
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
3UTR-3UTR CAA 90 bp GACAACCAGGGCTATAAAGAAGCTGGTAGACACCATAACAATGAAGGAGGTCCGATCTGCTGTGCCATCTaGAAAATAAAAGATTCTGAC +
Preference number: 3 (lower is better)
Translates to: DNQGYKEAGRHHNNEGGPICCAI*KIKDSD
Trigger: GTCAGAATCTTTTATTTTCAAGATGGCACAGCAGAT...CGGACCTCCTTCATTGTTATGGTGTCTACCAGCTTCTTTATAGCCCTGGTTGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
3UTR GCA 72 bp CAAACCCAGGTTGTCAGGCTTGAGAGCTCCTTTATCTaGTGTGCCATCTTGAAAATAAAAGATTCTGACATT +
Preference number: 3 (lower is better)
Translates to: QTQVVRLESSFI*CAILKIKDSDI
Trigger: AATGTCAGAATCTTTTATTTTCAAGATGGCACAGCAGATAAAGGAGCTCTCAAGCCTGACAACCTGGGTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
3UTR-3UTR CAA 90 bp AAGCAAAAGGTTTATTTTCCAGCATGTCAGGGTCAACCTTCAATTAGTTCCTCAATCATAGAAGTCTTCTaGATGTTACGTCCAATCATG +
Preference number: 3 (lower is better)
Translates to: KQKVYFPACQGQPSISSSIIEVF*MLRPIM
Trigger: CATGATTGGACGTAACATCAAGAAGACTTCTATGAT...TGAGGAACTAATTGAAGGTTGACCCTGACATGCTGGAAAATAAACCTTTTGCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp AGAGTCGGCTCTCTCTTTAGATCTCATGAGGCCTGGGGATCAAACCCAGGTTGTGCCACCAGCGCCAGGTaGGATCGTGCACTGGGTCTG +
Preference number: 4 (lower is better)
Translates to: RVGSLFRSHEAWGSNPGCATSAR*DRALGL
Trigger: CAGACCCAGTGCACGATCCCACCTGGCGCTGGTGGC...ACAACCTGGGTTTGATCCCCAGGCCTCATGAGATCTAAAGAGAGAGCCGACTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp CACTATGTGAGGCCACACGAGGCAGAACAGGATGTAGAAGACAACCAGGGCTATGCCACCAGCGCCAGGTaGGATCGTGCACTGGGTCTG +
Preference number: 4 (lower is better)
Translates to: HYVRPHEAEQDVEDNQGYATSAR*DRALGL
Trigger: CAGACCCAGTGCACGATCCCACCTGGCGCTGGTGGC...ATAGCCCTGGTTGTCTTCTACATCCTGTTCTGCCTCGTGTGGCCTCACATAGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
ENSMUST00000208607.2
CDS-3UTR TCA 90 bp TCCTCAAGGCCAGTGTTGAGGTCAGAGGACAGCTTCACAGAGTCGGCTCTCTCTGCTGGTTCTGTCGAATaGAGAGCGTGCTCTCGGTGG +
Preference number: 4 (lower is better)
Translates to: SSRPVLRSEDSFTESALSAGSVE*RACSRW
Trigger: CCACCGAGAGCACGCTCTTCATTCGACAGAACCAGC...AGAGAGAGCCGACTCTGTGAAGCTGTCCTCTGACCTCAACACTGGCCTTGAGGA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp TTAGATCTCATGAGGCCTGGGGATCAAACCCAGGTTGTCAGGCTTGAGAGCTCCTTCATCCCCATCAGGTaGCCCTTTCGGGCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: LDLMRPGDQTQVVRLESSFIPIR*PFRASS
Trigger: GGAGCTGGCCCGAAAGGGCCACCTGATGGGGATGAA...GGAGCTCTCAAGCCTGACAACCTGGGTTTGATCCCCAGGCCTCATGAGATCTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp TCCTCAAGGCCAGTGTTGAGGTCAGAGGACAGCTTCACAGAGTCGGCTCTCTCTCCAAGGTACGTGCGCTaGATGCAATTCCCAGGAGCG +
Preference number: 4 (lower is better)
Translates to: SSRPVLRSEDSFTESALSPRYVR*MQFPGA
Trigger: CGCTCCTGGGAATTGCATCCAGCGCACGTACCTTGG...AGAGAGAGCCGACTCTGTGAAGCTGTCCTCTGACCTCAACACTGGCCTTGAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061193.4
CDS-3UTR GCA 90 bp CCCTGCATAACTGGAAGTGGGAGGGGTGACCCTACAGACCAGACCCACCAACTGGAACCCATCTGCTGCTaGCATGGCTTTTGTCGAAGA +
Preference number: 4 (lower is better)
Translates to: PCITGSGRGDPTDQTHQLEPICC*HGFCRR
Trigger: TCTTCGACAAAAGCCATGGCAGCAGCAGATGGGTTC...CAGTTGGTGGGTCTGGTCTGTAGGGTCACCCCTCCCACTTCCAGTTATGCAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp CCCTGCATAACTGGAAGTGGGAGGGGTGACCCTACAGACCAGACCCACCAACTGCTGAGAAGCCAAGAATaGGACAGTAGAAGGAGCCGA +
Preference number: 4 (lower is better)
Translates to: PCITGSGRGDPTDQTHQLLRSQE*DSRRSR
Trigger: TCGGCTCCTTCTACTGTCCCATTCTTGGCTTCTCAG...CAGTTGGTGGGTCTGGTCTGTAGGGTCACCCCTCCCACTTCCAGTTATGCAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp TATGTGAGGCCACACGAGGCAGAACAGGATGTAGAAGACAACCAGGGCTATAAAGCCACCAGCGCCAGGTaGGATCGTGCACTGGGTCTG +
Preference number: 4 (lower is better)
Translates to: YVRPHEAEQDVEDNQGYKATSAR*DRALGL
Trigger: CAGACCCAGTGCACGATCCCACCTGGCGCTGGTGGC...TTTATAGCCCTGGTTGTCTTCTACATCCTGTTCTGCCTCGTGTGGCCTCACATA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
ENSMUST00000208607.2
CDS-3UTR TCA 90 bp CTCTCTTTAGATCTCATGAGGCCTGGGGATCAAACCCAGGTTGTCAGGCTTGAGGGACCCTCAAAACTGTaGGACTGGAGGCTGAAGCCC +
Preference number: 4 (lower is better)
Translates to: LSLDLMRPGDQTQVVRLEGPSKL*DWRLKP
Trigger: GGGCTTCAGCCTCCAGTCTCACAGTTTTGAGGGTCC...CTCAAGCCTGACAACCTGGGTTTGATCCCCAGGCCTCATGAGATCTAAAGAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061193.4
CDS-3UTR CCA 90 bp CACAGAGTCGGCTCTCTCTTTAGATCTCATGAGGCCTGGGGATCAAACCCAGGTGTGGCAATGGCGTCATaGATGGTGGCTGAGAAGCCA +
Preference number: 4 (lower is better)
Translates to: HRVGSLFRSHEAWGSNPGVAMAS*MVAEKP
Trigger: TGGCTTCTCAGCCACCATCCATGACGCCATTGCCAC...ACCTGGGTTTGATCCCCAGGCCTCATGAGATCTAAAGAGAGAGCCGACTCTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp GACATGAACATTCTAGCAAACCAGAAAGTCCTGGGGAGGTGGCAGGCTGCATTCTGCTCTCGGTGGCAATaGCGTCATGGATGGTGGCTG +
Preference number: 4 (lower is better)
Translates to: DMNILANQKVLGRWQAAFCSRWQ*RHGWWL
Trigger: CAGCCACCATCCATGACGCCATTGCCACCGAGAGCA...GAATGCAGCCTGCCACCTCCCCAGGACTTTCTGGTTTGCTAGAATGTTCATGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp AGGTCAGAGGACAGCTTCACAGAGTCGGCTCTCTCTTTAGATCTCATGAGGCCTAGAGCGTGCTCTCGGTaGCAATGGCGTCATGGATGG +
Preference number: 4 (lower is better)
Translates to: RSEDSFTESALSLDLMRPRACSR*QWRHGW
Trigger: CCATCCATGACGCCATTGCCACCGAGAGCACGCTCT...AGGCCTCATGAGATCTAAAGAGAGAGCCGACTCTGTGAAGCTGTCCTCTGACCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp TCGGCTCTCTCTTTAGATCTCATGAGGCCTGGGGATCAAACCCAGGTTGTCAGGTTGAAAGGGCACGTGTaGGTGAAGGAGATCGCCTGG +
Preference number: 4 (lower is better)
Translates to: SALSLDLMRPGDQTQVVRLKGHV*VKEIAW
Trigger: CCAGGCGATCTCCTTCACCCACACGTGCCCTTTCAA...CCTGACAACCTGGGTTTGATCCCCAGGCCTCATGAGATCTAAAGAGAGAGCCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
3UTR CAA 72 bp CAGACCAGGGACTCAGGCCACCTATGCTGTCTTAGCTaGAACATTGTCCTCTTTCGAACCAGCTCTGGAGGG +
Preference number: 4 (lower is better)
Translates to: QTRDSGHLCCLS*NIVLFRTSSGG
Trigger: CCCTCCAGAGCTGGTTCGAAAGAGGACAATGTTCAAGCTAAGACAGCATAGGTGGCCTGAGTCCCTGGTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp TTAGATCTCATGAGGCCTGGGGATCAAACCCAGGTTGTCAGGCTTGAGAGCTCCATGAACACGGGGGCATaGTTCACAGTGTACCACAGG +
Preference number: 4 (lower is better)
Translates to: LDLMRPGDQTQVVRLESSMNTGA*FTVYHR
Trigger: CCTGTGGTACACTGTGAACCATGCCCCCGTGTTCAT...GGAGCTCTCAAGCCTGACAACCTGGGTTTGATCCCCAGGCCTCATGAGATCTAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp CACAGAGTCGGCTCTCTCTTTAGATCTCATGAGGCCTGGGGATCAAACCCAGGTTGGCGTCATGGATGGTaGCTGAGAAGCCAAGAATGG +
Preference number: 4 (lower is better)
Translates to: HRVGSLFRSHEAWGSNPGWRHGW*LRSQEW
Trigger: CCATTCTTGGCTTCTCAGCCACCATCCATGACGCCA...ACCTGGGTTTGATCCCCAGGCCTCATGAGATCTAAAGAGAGAGCCGACTCTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp CACTATGTGAGGCCACACGAGGCAGAACAGGATGTAGAAGACAACCAGGGCTATTTGAAAGGGCACGTGTaGGTGAAGGAGATCGCCTGG +
Preference number: 4 (lower is better)
Translates to: HYVRPHEAEQDVEDNQGYLKGHV*VKEIAW
Trigger: CCAGGCGATCTCCTTCACCCACACGTGCCCTTTCAA...ATAGCCCTGGTTGTCTTCTACATCCTGTTCTGCCTCGTGTGGCCTCACATAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
3UTR CAA 72 bp CAGGGTCAACCTTCAATTAGTTCCTCAAGGCCAGTGTaGAGGTCAGAGGACAGCTTCACAGAGTCGGCTCTC +
Preference number: 4 (lower is better)
Translates to: QGQPSISSSRPV*RSEDSFTESAL
Trigger: GAGAGCCGACTCTGTGAAGCTGTCCTCTGACCTCAACACTGGCCTTGAGGAACTAATTGAAGGTTGACCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR TCA 90 bp GACAACCAGGGCTATAAAGAAGCTGGTAGACACCATAACAATGAAGGAGGTCCGGCTGGTTCTGTCGAATaGAGAGCGTGCTCTCGGTGG +
Preference number: 4 (lower is better)
Translates to: DNQGYKEAGRHHNNEGGPAGSVE*RACSRW
Trigger: CCACCGAGAGCACGCTCTTCATTCGACAGAACCAGC...CGGACCTCCTTCATTGTTATGGTGTCTACCAGCTTCTTTATAGCCCTGGTTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
CDS-3UTR TCA 90 bp GACATGAACATTCTAGCAAACCAGAAAGTCCTGGGGAGGTGGCAGGCTGCATTCCTGAGTCACAGTTACTaGAAGGCACTCAGGATCCGC +
Preference number: 4 (lower is better)
Translates to: DMNILANQKVLGRWQAAFLSHSY*KALRIR
Trigger: GCGGATCCTGAGTGCCTTTCAGTAACTGTGACTCAG...GAATGCAGCCTGCCACCTCCCCAGGACTTTCTGGTTTGCTAGAATGTTCATGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061193.4
CDS-3UTR CCA 90 bp TCGGCTCTCTCTTTAGATCTCATGAGGCCTGGGGATCAAACCCAGGTTGTCAGGGAATGCCCAAAGGTTTaGTTTTCTCGGCCACACAGG +
Preference number: 4 (lower is better)
Translates to: SALSLDLMRPGDQTQVVRECPKV*FSRPHR
Trigger: CCTGTGTGGCCGAGAAAACCAAACCTTTGGGCATTC...CCTGACAACCTGGGTTTGATCCCCAGGCCTCATGAGATCTAAAGAGAGAGCCGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp CTCTCTTTAGATCTCATGAGGCCTGGGGATCAAACCCAGGTTGTCAGGCTTGAGATGAACACGGGGGCATaGTTCACAGTGTACCACAGG +
Preference number: 4 (lower is better)
Translates to: LSLDLMRPGDQTQVVRLEMNTGA*FTVYHR
Trigger: CCTGTGGTACACTGTGAACCATGCCCCCGTGTTCAT...CTCAAGCCTGACAACCTGGGTTTGATCCCCAGGCCTCATGAGATCTAAAGAGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp GTCGGCTCTCTCTTTAGATCTCATGAGGCCTGGGGATCAAACCCAGGTTGTCAGCTGAGAAGCCAAGAATaGGACAGTAGAAGGAGCCGA +
Preference number: 4 (lower is better)
Translates to: VGSLFRSHEAWGSNPGCQLRSQE*DSRRSR
Trigger: TCGGCTCCTTCTACTGTCCCATTCTTGGCTTCTCAG...CTGACAACCTGGGTTTGATCCCCAGGCCTCATGAGATCTAAAGAGAGAGCCGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp GTCGGCTCTCTCTTTAGATCTCATGAGGCCTGGGGATCAAACCCAGGTTGTCAGCAATGGCGTCATGGATaGTGGCTGAGAAGCCAAGAA +
Preference number: 4 (lower is better)
Translates to: VGSLFRSHEAWGSNPGCQQWRHG*WLRSQE
Trigger: TTCTTGGCTTCTCAGCCACCATCCATGACGCCATTG...CTGACAACCTGGGTTTGATCCCCAGGCCTCATGAGATCTAAAGAGAGAGCCGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp GAAGAACTCAGGTGGGTAGATGCTTTGGGGGATGATGTCATAACAAGGGGAGTTTGCTCTCGGTGGCAATaGCGTCATGGATGGTGGCTG +
Preference number: 4 (lower is better)
Translates to: EELRWVDALGDDVITRGVCSRWQ*RHGWWL
Trigger: CAGCCACCATCCATGACGCCATTGCCACCGAGAGCA...AACTCCCCTTGTTATGACATCATCCCCCAAAGCATCTACCCACCTGAGTTCTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp GAAGAACTCAGGTGGGTAGATGCTTTGGGGGATGATGTCATAACAAGGGGAGTTAGAGCGTGCTCTCGGTaGCAATGGCGTCATGGATGG +
Preference number: 4 (lower is better)
Translates to: EELRWVDALGDDVITRGVRACSR*QWRHGW
Trigger: CCATCCATGACGCCATTGCCACCGAGAGCACGCTCT...AACTCCCCTTGTTATGACATCATCCCCCAAAGCATCTACCCACCTGAGTTCTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp GTCGGCTCTCTCTTTAGATCTCATGAGGCCTGGGGATCAAACCCAGGTTGTCAGTTCAGAGACCAGAGGTaGCAGAGCAACATAGCTCTC +
Preference number: 4 (lower is better)
Translates to: VGSLFRSHEAWGSNPGCQFRDQR*QSNIAL
Trigger: GAGAGCTATGTTGCTCTGCCACCTCTGGTCTCTGAA...CTGACAACCTGGGTTTGATCCCCAGGCCTCATGAGATCTAAAGAGAGAGCCGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp AGACCCAGGCCTTCACTATGTGAGGCCACACGAGGCAGAACAGGATGTAGAAGAAGGGCTTATCATACTTaGAGTGCAGCCACAGCAGGT +
Preference number: 4 (lower is better)
Translates to: RPRPSLCEATRGRTGCRRRAYHT*SAATAG
Trigger: ACCTGCTGTGGCTGCACTCCAAGTATGATAAGCCCT...TCTTCTACATCCTGTTCTGCCTCGTGTGGCCTCACATAGTGAAGGCCTGGGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
CDS-3UTR TCA 90 bp TCCTCAAGGCCAGTGTTGAGGTCAGAGGACAGCTTCACAGAGTCGGCTCTCTCTTGTTGTTCAATGTGTTaGAGAACAAGCCCTTGGGTG +
Preference number: 4 (lower is better)
Translates to: SSRPVLRSEDSFTESALSCCSMC*RTSPWV
Trigger: CACCCAAGGGCTTGTTCTTCAACACATTGAACAACA...AGAGAGAGCCGACTCTGTGAAGCTGTCCTCTGACCTCAACACTGGCCTTGAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR GCA 90 bp AGGTCAGAGGACAGCTTCACAGAGTCGGCTCTCTCTTTAGATCTCATGAGGCCTGAACCCATCTGCTGCTaGCATGGCTTTTGTCGAAGA +
Preference number: 4 (lower is better)
Translates to: RSEDSFTESALSLDLMRPEPICC*HGFCRR
Trigger: TCTTCGACAAAAGCCATGGCAGCAGCAGATGGGTTC...AGGCCTCATGAGATCTAAAGAGAGAGCCGACTCTGTGAAGCTGTCCTCTGACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp CACTATGTGAGGCCACACGAGGCAGAACAGGATGTAGAAGACAACCAGGGCTATGAATGCCCAAAGGTTTaGTTTTCTCGGCCACACAGG +
Preference number: 4 (lower is better)
Translates to: HYVRPHEAEQDVEDNQGYECPKV*FSRPHR
Trigger: CCTGTGTGGCCGAGAAAACCAAACCTTTGGGCATTC...ATAGCCCTGGTTGTCTTCTACATCCTGTTCTGCCTCGTGTGGCCTCACATAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp CTCTCTTTAGATCTCATGAGGCCTGGGGATCAAACCCAGGTTGTCAGGCTTGAGTTCAGAGACCAGAGGTaGCAGAGCAACATAGCTCTC +
Preference number: 4 (lower is better)
Translates to: LSLDLMRPGDQTQVVRLEFRDQR*QSNIAL
Trigger: GAGAGCTATGTTGCTCTGCCACCTCTGGTCTCTGAA...CTCAAGCCTGACAACCTGGGTTTGATCCCCAGGCCTCATGAGATCTAAAGAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp CACTATGTGAGGCCACACGAGGCAGAACAGGATGTAGAAGACAACCAGGGCTATAGGGCTTATCATACTTaGAGTGCAGCCACAGCAGGT +
Preference number: 4 (lower is better)
Translates to: HYVRPHEAEQDVEDNQGYRAYHT*SAATAG
Trigger: ACCTGCTGTGGCTGCACTCCAAGTATGATAAGCCCT...ATAGCCCTGGTTGTCTTCTACATCCTGTTCTGCCTCGTGTGGCCTCACATAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
3UTR CAA 72 bp GTGCGCTGGATGCAATTCCCAGGAGCGCCCAAGACCTaGAGCATCATAGAAGTCTTCTTGATGTTACGTCCA +
Preference number: 4 (lower is better)
Translates to: VRWMQFPGAPKT*SIIEVFLMLRP
Trigger: TGGACGTAACATCAAGAAGACTTCTATGATGCTCAAGGTCTTGGGCGCTCCTGGGAATTGCATCCAGCGCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
3UTR CAA 72 bp GGTGGGGCAGGATTGTGGAACCCTAGGCATTACTGTTaGAGGCACCTTGAGTGTAGTTTGCAGAAAGAGTCC +
Preference number: 4 (lower is better)
Translates to: GGAGLWNPRHYC*RHLECSLQKES
Trigger: GGACTCTTTCTGCAAACTACACTCAAGGTGCCTCAAACAGTAATGCCTAGGGTTCCACAATCCTGCCCCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
CDS-3UTR TCA 90 bp CTCAAGGCCAGTGTTGAGGTCAGAGGACAGCTTCACAGAGTCGGCTCTCTCTTTCCGGACAGGAAAAGTTaGTTTGCAGGTAGTAAGGAA +
Preference number: 4 (lower is better)
Translates to: LKASVEVRGQLHRVGSLFPDRKS*FAGSKE
Trigger: TTCCTTACTACCTGCAAATCAACTTTTCCTGTCCGG...AAAGAGAGAGCCGACTCTGTGAAGCTGTCCTCTGACCTCAACACTGGCCTTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR TCA 90 bp TTGTGGAACCCTAGGCATTACTGTTTGAGGCACCTTGAGTGTAGTTTGCAGAAAGCTGGTTCTGTCGAATaGAGAGCGTGCTCTCGGTGG +
Preference number: 4 (lower is better)
Translates to: LWNPRHYCLRHLECSLQKAGSVE*RACSRW
Trigger: CCACCGAGAGCACGCTCTTCATTCGACAGAACCAGC...TTTCTGCAAACTACACTCAAGGTGCCTCAAACAGTAATGCCTAGGGTTCCACAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
CDS-3UTR TCA 90 bp TTAGATCTCATGAGGCCTGGGGATCAAACCCAGGTTGTCAGGCTTGAGAGCTCCTGTTGTTCAATGTGTTaGAGAACAAGCCCTTGGGTG +
Preference number: 4 (lower is better)
Translates to: LDLMRPGDQTQVVRLESSCCSMC*RTSPWV
Trigger: CACCCAAGGGCTTGTTCTTCAACACATTGAACAACA...GGAGCTCTCAAGCCTGACAACCTGGGTTTGATCCCCAGGCCTCATGAGATCTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR TCA 90 bp CTTCACTATGTGAGGCCACACGAGGCAGAACAGGATGTAGAAGACAACCAGGGCTGTTGTTCAATGTGTTaGAGAACAAGCCCTTGGGTG +
Preference number: 4 (lower is better)
Translates to: LHYVRPHEAEQDVEDNQGCCSMC*RTSPWV
Trigger: CACCCAAGGGCTTGTTCTTCAACACATTGAACAACA...GCCCTGGTTGTCTTCTACATCCTGTTCTGCCTCGTGTGGCCTCACATAGTGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
ENSMUST00000208607.2
CDS-3UTR GCA 90 bp GTGAGGCCACACGAGGCAGAACAGGATGTAGAAGACAACCAGGGCTATAAAGAAGAACCCATCTGCTGCTaGCATGGCTTTTGTCGAAGA +
Preference number: 4 (lower is better)
Translates to: VRPHEAEQDVEDNQGYKEEPICC*HGFCRR
Trigger: TCTTCGACAAAAGCCATGGCAGCAGCAGATGGGTTC...TTCTTTATAGCCCTGGTTGTCTTCTACATCCTGTTCTGCCTCGTGTGGCCTCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
CDS-3UTR GCA 90 bp TATGTGAGGCCACACGAGGCAGAACAGGATGTAGAAGACAACCAGGGCTATAAACACGAACCCATCTGCTaGTGCCATGGCTTTTGTCGA +
Preference number: 4 (lower is better)
Translates to: YVRPHEAEQDVEDNQGYKHEPIC*CHGFCR
Trigger: TCGACAAAAGCCATGGCAGCAGCAGATGGGTTCGTG...TTTATAGCCCTGGTTGTCTTCTACATCCTGTTCTGCCTCGTGTGGCCTCACATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
CDS-3UTR GCA 90 bp TCGGCTCTCTCTTTAGATCTCATGAGGCCTGGGGATCAAACCCAGGTTGTCAGGTGTTACGTCCAATCATaGCCTGTTCAGAGCATCTCT +
Preference number: 4 (lower is better)
Translates to: SALSLDLMRPGDQTQVVRCYVQS*PVQSIS
Trigger: AGAGATGCTCTGAACAGGGCATGATTGGACGTAACA...CCTGACAACCTGGGTTTGATCCCCAGGCCTCATGAGATCTAAAGAGAGAGCCGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061193.4
CDS-3UTR CCA 90 bp CTCAAGGCCAGTGTTGAGGTCAGAGGACAGCTTCACAGAGTCGGCTCTCTCTTTGAGTCTGTCAACTTTTaGAACACCTTGGCCACTGTA +
Preference number: 4 (lower is better)
Translates to: LKASVEVRGQLHRVGSLFESVNF*NTLATV
Trigger: TACAGTGGCCAAGGTGTTCCAAAAGTTGACAGACTC...AAAGAGAGAGCCGACTCTGTGAAGCTGTCCTCTGACCTCAACACTGGCCTTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp CTCGGTGGTCCTTTCGACCTTTGTTTTCCAGATGAGGCTATTCGTTCTATGCAGATGAACACGGGGGCATaGTTCACAGTGTACCACAGG +
Preference number: 4 (lower is better)
Translates to: LGGPFDLCFPDEAIRSMQMNTGA*FTVYHR
Trigger: CCTGTGGTACACTGTGAACCATGCCCCCGTGTTCAT...CTGCATAGAACGAATAGCCTCATCTGGAAAACAAAGGTCGAAAGGACCACCGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp GACAACCAGGGCTATAAAGAAGCTGGTAGACACCATAACAATGAAGGAGGTCCGTGGCGTCATGGATGGTaGCTGAGAAGCCAAGAATGG +
Preference number: 4 (lower is better)
Translates to: DNQGYKEAGRHHNNEGGPWRHGW*LRSQEW
Trigger: CCATTCTTGGCTTCTCAGCCACCATCCATGACGCCA...CGGACCTCCTTCATTGTTATGGTGTCTACCAGCTTCTTTATAGCCCTGGTTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp AGGTGGGTAGATGCTTTGGGGGATGATGTCATAACAAGGGGAGTTCTCCAAGCACAATGGCGTCATGGATaGTGGCTGAGAAGCCAAGAA +
Preference number: 4 (lower is better)
Translates to: RWVDALGDDVITRGVLQAQWRHG*WLRSQE
Trigger: TTCTTGGCTTCTCAGCCACCATCCATGACGCCATTG...TGCTTGGAGAACTCCCCTTGTTATGACATCATCCCCCAAAGCATCTACCCACCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp TTGTGGAACCCTAGGCATTACTGTTTGAGGCACCTTGAGTGTAGTTTGCAGAAATGCTCTCGGTGGCAATaGCGTCATGGATGGTGGCTG +
Preference number: 4 (lower is better)
Translates to: LWNPRHYCLRHLECSLQKCSRWQ*RHGWWL
Trigger: CAGCCACCATCCATGACGCCATTGCCACCGAGAGCA...TTTCTGCAAACTACACTCAAGGTGCCTCAAACAGTAATGCCTAGGGTTCCACAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp AGGTGGGTAGATGCTTTGGGGGATGATGTCATAACAAGGGGAGTTCTCCAAGCATTCAGAGACCAGAGGTaGCAGAGCAACATAGCTCTC +
Preference number: 4 (lower is better)
Translates to: RWVDALGDDVITRGVLQAFRDQR*QSNIAL
Trigger: GAGAGCTATGTTGCTCTGCCACCTCTGGTCTCTGAA...TGCTTGGAGAACTCCCCTTGTTATGACATCATCCCCCAAAGCATCTACCCACCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp GAACAGGATGTAGAAGACAACCAGGGCTATAAAGAAGCTGGTAGACACCATAACCCAAGGTACGTGCGCTaGATGCAATTCCCAGGAGCG +
Preference number: 4 (lower is better)
Translates to: EQDVEDNQGYKEAGRHHNPRYVR*MQFPGA
Trigger: CGCTCCTGGGAATTGCATCCAGCGCACGTACCTTGG...GTTATGGTGTCTACCAGCTTCTTTATAGCCCTGGTTGTCTTCTACATCCTGTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
CDS-3UTR CCA 90 bp AGAGTCGGCTCTCTCTTTAGATCTCATGAGGCCTGGGGATCAAACCCAGGTTGTGAAGAAGAACTCAGGTaGGTAGATGCTTTGGGGGAT +
Preference number: 4 (lower is better)
Translates to: RVGSLFRSHEAWGSNPGCEEELR*VDALGD
Trigger: ATCCCCCAAAGCATCTACCCACCTGAGTTCTTCTTC...ACAACCTGGGTTTGATCCCCAGGCCTCATGAGATCTAAAGAGAGAGCCGACTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061193.4
CDS-3UTR TCA 90 bp TCCTCAAGGCCAGTGTTGAGGTCAGAGGACAGCTTCACAGAGTCGGCTCTCTCTACGGTAGAAATTGACTaGGTACATGTAGTTGATCTG +
Preference number: 4 (lower is better)
Translates to: SSRPVLRSEDSFTESALSTVEID*VHVVDL
Trigger: CAGATCAACTACATGTACTCAGTCAATTTCTACCGT...AGAGAGAGCCGACTCTGTGAAGCTGTCCTCTGACCTCAACACTGGCCTTGAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR TCA 90 bp TCCTCAAGGCCAGTGTTGAGGTCAGAGGACAGCTTCACAGAGTCGGCTCTCTCTCTGGAAATTAGAATCTaGGAACAGGATGGACTTTTC +
Preference number: 4 (lower is better)
Translates to: SSRPVLRSEDSFTESALSLEIRI*EQDGLF
Trigger: GAAAAGTCCATCCTGTTCTCAGATTCTAATTTCCAG...AGAGAGAGCCGACTCTGTGAAGCTGTCCTCTGACCTCAACACTGGCCTTGAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR TCA 90 bp GGTCCCCAAGGGATTACGTGTCCAGCGGGCTGTTGTAACGGAAGATTTCTTCCTGGCACATCAATTAAATaGATCTCCTTGAAAGGGCAC +
Preference number: 4 (lower is better)
Translates to: GPQGITCPAGCCNGRFLPGTSIK*ISLKGH
Trigger: GTGCCCTTTCAAGGAGATTCATTTAATTGATGTGCC...AGGAAGAAATCTTCCGTTACAACAGCCCGCTGGACACGTAATCCCTTGGGGACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
CDS-3UTR TCA 90 bp CTTCACAGAGTCGGCTCTCTCTTTAGATCTCATGAGGCCTGGGGATCAAACCCACTTGTGAAGGTGTCCTaGTGTGACAATAAGACCACA +
Preference number: 4 (lower is better)
Translates to: LHRVGSLFRSHEAWGSNPLVKVS*CDNKTT
Trigger: TGTGGTCTTATTGTCACATCAGGACACCTTCACAAG...TGGGTTTGATCCCCAGGCCTCATGAGATCTAAAGAGAGAGCCGACTCTGTGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR TCA 90 bp AGACCCAGGCCTTCACTATGTGAGGCCACACGAGGCAGAACAGGATGTAGAAGATTAAGAAGGACATCCTaGGTCACAGTTACTGAAAGG +
Preference number: 4 (lower is better)
Translates to: RPRPSLCEATRGRTGCRRLRRTS*VTVTER
Trigger: CCTTTCAGTAACTGTGACTCAGGATGTCCTTCTTAA...TCTTCTACATCCTGTTCTGCCTCGTGTGGCCTCACATAGTGAAGGCCTGGGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
CDS-3UTR TCA 90 bp CTTCACTATGTGAGGCCACACGAGGCAGAACAGGATGTAGAAGACAACCAGGGCTTAAGAAGGACATCCTaGGTCACAGTTACTGAAAGG +
Preference number: 4 (lower is better)
Translates to: LHYVRPHEAEQDVEDNQGLRRTS*VTVTER
Trigger: CCTTTCAGTAACTGTGACTCAGGATGTCCTTCTTAA...GCCCTGGTTGTCTTCTACATCCTGTTCTGCCTCGTGTGGCCTCACATAGTGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
CDS-3UTR TCA 90 bp AGGTCAGAGGACAGCTTCACAGAGTCGGCTCTCTCTTTAGATCTCATGAGGCCTTGCTCACTAACAACTTaGAGAAGAACTCAGGTGGGT +
Preference number: 4 (lower is better)
Translates to: RSEDSFTESALSLDLMRPCSLTT*RRTQVG
Trigger: ACCCACCTGAGTTCTTCTTCAAGTTGTTAGTGAGCA...AGGCCTCATGAGATCTAAAGAGAGAGCCGACTCTGTGAAGCTGTCCTCTGACCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061193.4
CDS-3UTR CCA 90 bp AGGTCAGAGGACAGCTTCACAGAGTCGGCTCTCTCTTTAGATCTCATGAGGCCTGAGTCTGTCAACTTTTaGAACACCTTGGCCACTGTA +
Preference number: 4 (lower is better)
Translates to: RSEDSFTESALSLDLMRPESVNF*NTLATV
Trigger: TACAGTGGCCAAGGTGTTCCAAAAGTTGACAGACTC...AGGCCTCATGAGATCTAAAGAGAGAGCCGACTCTGTGAAGCTGTCCTCTGACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp GTCGGCTCTCTCTTTAGATCTCATGAGGCCTGGGGATCAAACCCAGGTTGTCAGCATAGAACCTTTTCTTaGATACGAAGGGCCCTATAC +
Preference number: 4 (lower is better)
Translates to: VGSLFRSHEAWGSNPGCQHRTFS*IRRALY
Trigger: GTATAGGGCCCTTCGTATCCAAGAAAAGGTTCTATG...CTGACAACCTGGGTTTGATCCCCAGGCCTCATGAGATCTAAAGAGAGAGCCGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp CCTTTCGACCTTTGTTTTCCAGATGAGGCTATTCGTTCTATGCAGGCCCATATAGTGGCAATGGCGTCATaGATGGTGGCTGAGAAGCCA +
Preference number: 4 (lower is better)
Translates to: PFDLCFPDEAIRSMQAHIVAMAS*MVAEKP
Trigger: TGGCTTCTCAGCCACCATCCATGACGCCATTGCCAC...TATATGGGCCTGCATAGAACGAATAGCCTCATCTGGAAAACAAAGGTCGAAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp CACTCAGGATCCGCTATTGTCACAGCAATTGCCAGCTTCTTATCCACATTAATAAGAGCGTGCTCTCGGTaGCAATGGCGTCATGGATGG +
Preference number: 4 (lower is better)
Translates to: HSGSAIVTAIASFLSTLIRACSR*QWRHGW
Trigger: CCATCCATGACGCCATTGCCACCGAGAGCACGCTCT...TATTAATGTGGATAAGAAGCTGGCAATTGCTGTGACAATAGCGGATCCTGAGTG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp CCTTTCGACCTTTGTTTTCCAGATGAGGCTATTCGTTCTATGCAGGCCCATATATTGAAAGGGCACGTGTaGGTGAAGGAGATCGCCTGG +
Preference number: 4 (lower is better)
Translates to: PFDLCFPDEAIRSMQAHILKGHV*VKEIAW
Trigger: CCAGGCGATCTCCTTCACCCACACGTGCCCTTTCAA...TATATGGGCCTGCATAGAACGAATAGCCTCATCTGGAAAACAAAGGTCGAAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp TATGTGCTATTGTCTACACCTCTATTGCTCACTAACAACTTGAAGAAGAACTCAGCCACCAGCGCCAGGTaGGATCGTGCACTGGGTCTG +
Preference number: 4 (lower is better)
Translates to: YVLLSTPLLLTNNLKKNSATSAR*DRALGL
Trigger: CAGACCCAGTGCACGATCCCACCTGGCGCTGGTGGC...TGAGTTCTTCTTCAAGTTGTTAGTGAGCAATAGAGGTGTAGACAATAGCACATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
ENSMUST00000208607.2
3UTR CAA 72 bp GGAGCGCCCAAGACCTTGAGCATCATAGAAGTCTTCTaGATGTTACGTCCAATCATGCCCTGTTCAGAGCAT +
Preference number: 4 (lower is better)
Translates to: GAPKTLSIIEVF*MLRPIMPCSEH
Trigger: ATGCTCTGAACAGGGCATGATTGGACGTAACATCAAGAAGACTTCTATGATGCTCAAGGTCTTGGGCGCTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
3UTR CAA 72 bp CGGACAGCCGATGAATATTGGTACCACTTTGAAACCTaGAATAATTCCCCCAAGGTACGTGCGCTGGATGCA +
Preference number: 4 (lower is better)
Translates to: RTADEYWYHFET*NNSPKVRALDA
Trigger: TGCATCCAGCGCACGTACCTTGGGGGAATTATTCAAGGTTTCAAAGTGGTACCAATATTCATCGGCTGTCCG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
CDS-3UTR TCA 90 bp AGAGGCCTAAGGGTTCATGAGGAAGAGTACAGACCAGGGACTCAGGCCACCTATACGGTAGAAATTGACTaGGTACATGTAGTTGATCTG +
Preference number: 4 (lower is better)
Translates to: RGLRVHEEEYRPGTQATYTVEID*VHVVDL
Trigger: CAGATCAACTACATGTACTCAGTCAATTTCTACCGT...ATAGGTGGCCTGAGTCCCTGGTCTGTACTCTTCCTCATGAACCCTTAGGCCTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
CDS-3UTR TCA 90 bp CTTCACAGAGTCGGCTCTCTCTTTAGATCTCATGAGGCCTGGGGATCAAACCCAGGCACATCAATTAAATaGATCTCCTTGAAAGGGCAC +
Preference number: 4 (lower is better)
Translates to: LHRVGSLFRSHEAWGSNPGTSIK*ISLKGH
Trigger: GTGCCCTTTCAAGGAGATTCATTTAATTGATGTGCC...TGGGTTTGATCCCCAGGCCTCATGAGATCTAAAGAGAGAGCCGACTCTGTGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR TCA 90 bp TTAGATCTCATGAGGCCTGGGGATCAAACCCAGGTTGTCAGGCTTGAGAGCTCCTATGCTGTCTTAGCTTaGACATTGTCCTCTTTCGAA +
Preference number: 4 (lower is better)
Translates to: LDLMRPGDQTQVVRLESSYAVLA*TLSSFE
Trigger: TTCGAAAGAGGACAATGTTCAAGCTAAGACAGCATA...GGAGCTCTCAAGCCTGACAACCTGGGTTTGATCCCCAGGCCTCATGAGATCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061193.4
CDS-3UTR GCA 90 bp CACAGAGTCGGCTCTCTCTTTAGATCTCATGAGGCCTGGGGATCAAACCCAGGTCAACATAGCTCTCTGTaGGTGATGCATGATGTTTTT +
Preference number: 4 (lower is better)
Translates to: HRVGSLFRSHEAWGSNPGQHSSL*VMHDVF
Trigger: AAAAACATCATGCATCACGCACAGAGAGCTATGTTG...ACCTGGGTTTGATCCCCAGGCCTCATGAGATCTAAAGAGAGAGCCGACTCTGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR GCA 90 bp CACGAGGCAGAACAGGATGTAGAAGACAACCAGGGCTATAAAGAAGCTGGTAGAATCGTGCACTGGGTCTaGATAGGGCTCTTCATTTTC +
Preference number: 4 (lower is better)
Translates to: HEAEQDVEDNQGYKEAGRIVHWV*IGLFIF
Trigger: GAAAATGAAGAGCCCTATGCAGACCCAGTGCACGAT...TCTACCAGCTTCTTTATAGCCCTGGTTGTCTTCTACATCCTGTTCTGCCTCGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208371.2
CDS-3UTR CCA 90 bp TTGTGGAACCCTAGGCATTACTGTTTGAGGCACCTTGAGTGTAGTTTGCAGAAATGGCGTCATGGATGGTaGCTGAGAAGCCAAGAATGG +
Preference number: 4 (lower is better)
Translates to: LWNPRHYCLRHLECSLQKWRHGW*LRSQEW
Trigger: CCATTCTTGGCTTCTCAGCCACCATCCATGACGCCA...TTTCTGCAAACTACACTCAAGGTGCCTCAAACAGTAATGCCTAGGGTTCCACAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp GCAGAACAGGATGTAGAAGACAACCAGGGCTATAAAGAAGCTGGTAGACACCATCAATGGCGTCATGGATaGTGGCTGAGAAGCCAAGAA +
Preference number: 4 (lower is better)
Translates to: AEQDVEDNQGYKEAGRHHQWRHG*WLRSQE
Trigger: TTCTTGGCTTCTCAGCCACCATCCATGACGCCATTG...ATGGTGTCTACCAGCTTCTTTATAGCCCTGGTTGTCTTCTACATCCTGTTCTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp CTTCACTATGTGAGGCCACACGAGGCAGAACAGGATGTAGAAGACAACCAGGGCACAGCCGATGAATATTaGTACCACTTTGAAACCTTG +
Preference number: 4 (lower is better)
Translates to: LHYVRPHEAEQDVEDNQGTADEY*YHFETL
Trigger: CAAGGTTTCAAAGTGGTACCAATATTCATCGGCTGT...GCCCTGGTTGTCTTCTACATCCTGTTCTGCCTCGTGTGGCCTCACATAGTGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
CDS-3UTR CCA 90 bp TCCTCGGTGGTCCTTTCGACCTTTGTTTTCCAGATGAGGCTATTCGTTCTATGCGCGAAAGAGGAAGCATaGCATCTCGGCGTCTTTAAT +
Preference number: 4 (lower is better)
Translates to: SSVVLSTFVFQMRLFVLCAKEEA*HLGVFN
Trigger: ATTAAAGACGCCGAGATGCCATGCTTCCTCTTTCGC...GCATAGAACGAATAGCCTCATCTGGAAAACAAAGGTCGAAAGGACCACCGAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207115.2
CDS-3UTR TCA 90 bp AGGTCAGAGGACAGCTTCACAGAGTCGGCTCTCTCTTTAGATCTCATGAGGCCTAGTCTGCCAGAAAAATaGATTCTTCCCTATTGTAGC +
Preference number: 4 (lower is better)
Translates to: RSEDSFTESALSLDLMRPSLPEK*ILPYCS
Trigger: GCTACAATAGGGAAGAATTCATTTTTCTGGCAGACT...AGGCCTCATGAGATCTAAAGAGAGAGCCGACTCTGTGAAGCTGTCCTCTGACCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR TCA 90 bp CACGAGGCAGAACAGGATGTAGAAGACAACCAGGGCTATAAAGAAGCTGGTAGACTTGTGAAGGTGTCCTaGTGTGACAATAAGACCACA +
Preference number: 4 (lower is better)
Translates to: HEAEQDVEDNQGYKEAGRLVKVS*CDNKTT
Trigger: TGTGGTCTTATTGTCACATCAGGACACCTTCACAAG...TCTACCAGCTTCTTTATAGCCCTGGTTGTCTTCTACATCCTGTTCTGCCTCGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
ENSMUST00000208607.2
CDS-3UTR TCA 90 bp GTAGAAGACAACCAGGGCTATAAAGAAGCTGGTAGACACCATAACAATGAAGGACTGAGTCACAGTTACTaGAAGGCACTCAGGATCCGC +
Preference number: 4 (lower is better)
Translates to: VEDNQGYKEAGRHHNNEGLSHSY*KALRIR
Trigger: GCGGATCCTGAGTGCCTTTCAGTAACTGTGACTCAG...TCCTTCATTGTTATGGTGTCTACCAGCTTCTTTATAGCCCTGGTTGTCTTCTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
CDS-3UTR GCA 90 bp TATGTGAGGCCACACGAGGCAGAACAGGATGTAGAAGACAACCAGGGCTATAAATGTTACGTCCAATCATaGCCTGTTCAGAGCATCTCT +
Preference number: 4 (lower is better)
Translates to: YVRPHEAEQDVEDNQGYKCYVQS*PVQSIS
Trigger: AGAGATGCTCTGAACAGGGCATGATTGGACGTAACA...TTTATAGCCCTGGTTGTCTTCTACATCCTGTTCTGCCTCGTGTGGCCTCACATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
CDS-3UTR CCA 90 bp CACTATGTGAGGCCACACGAGGCAGAACAGGATGTAGAAGACAACCAGGGCTATACAGCCGATGAATATTaGTACCACTTTGAAACCTTG +
Preference number: 4 (lower is better)
Translates to: HYVRPHEAEQDVEDNQGYTADEY*YHFETL
Trigger: CAAGGTTTCAAAGTGGTACCAATATTCATCGGCTGT...ATAGCCCTGGTTGTCTTCTACATCCTGTTCTGCCTCGTGTGGCCTCACATAGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
CDS-3UTR TCA 90 bp GCAGAACAGGATGTAGAAGACAACCAGGGCTATAAAGAAGCTGGTAGACACCATCTTGTGAAGGTGTCCTaGTGTGACAATAAGACCACA +
Preference number: 4 (lower is better)
Translates to: AEQDVEDNQGYKEAGRHHLVKVS*CDNKTT
Trigger: TGTGGTCTTATTGTCACATCAGGACACCTTCACAAG...ATGGTGTCTACCAGCTTCTTTATAGCCCTGGTTGTCTTCTACATCCTGTTCTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp TCCTCGGTGGTCCTTTCGACCTTTGTTTTCCAGATGAGGCTATTCGTTCTATGCCATAGAACCTTTTCTTaGATACGAAGGGCCCTATAC +
Preference number: 4 (lower is better)
Translates to: SSVVLSTFVFQMRLFVLCHRTFS*IRRALY
Trigger: GTATAGGGCCCTTCGTATCCAAGAAAAGGTTCTATG...GCATAGAACGAATAGCCTCATCTGGAAAACAAAGGTCGAAAGGACCACCGAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp TATGTGCTATTGTCTACACCTCTATTGCTCACTAACAACTTGAAGAAGAACTCACCAAGGTACGTGCGCTaGATGCAATTCCCAGGAGCG +
Preference number: 4 (lower is better)
Translates to: YVLLSTPLLLTNNLKKNSPRYVR*MQFPGA
Trigger: CGCTCCTGGGAATTGCATCCAGCGCACGTACCTTGG...TGAGTTCTTCTTCAAGTTGTTAGTGAGCAATAGAGGTGTAGACAATAGCACATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
CDS-3UTR CCA 90 bp AAGACAACCAGGGCTATAAAGAAGCTGGTAGACACCATAACAATGAAGGAGGTCGCGAAAGAGGAAGCATaGCATCTCGGCGTCTTTAAT +
Preference number: 4 (lower is better)
Translates to: KTTRAIKKLVDTITMKEVAKEEA*HLGVFN
Trigger: ATTAAAGACGCCGAGATGCCATGCTTCCTCTTTCGC...GACCTCCTTCATTGTTATGGTGTCTACCAGCTTCTTTATAGCCCTGGTTGTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
CDS-3UTR TCA 90 bp AAGACAACCAGGGCTATAAAGAAGCTGGTAGACACCATAACAATGAAGGAGGTCTGTTGTTCAATGTGTTaGAGAACAAGCCCTTGGGTG +
Preference number: 4 (lower is better)
Translates to: KTTRAIKKLVDTITMKEVCCSMC*RTSPWV
Trigger: CACCCAAGGGCTTGTTCTTCAACACATTGAACAACA...GACCTCCTTCATTGTTATGGTGTCTACCAGCTTCTTTATAGCCCTGGTTGTCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
ENSMUST00000208607.2
CDS-3UTR GCA 90 bp TATGTGAGGCCACACGAGGCAGAACAGGATGTAGAAGACAACCAGGGCTATAAACTCCTTGGGAAAGTCTaGCAGAAAAATGAATTCTTC +
Preference number: 4 (lower is better)
Translates to: YVRPHEAEQDVEDNQGYKLLGKV*QKNEFF
Trigger: GAAGAATTCATTTTTCTGGCAGACTTTCCCAAGGAG...TTTATAGCCCTGGTTGTCTTCTACATCCTGTTCTGCCTCGTGTGGCCTCACATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
ENSMUST00000208607.2
CDS-3UTR GCA 90 bp GAAGAACTCAGGTGGGTAGATGCTTTGGGGGATGATGTCATAACAAGGGGAGTTCTCCTTGGGAAAGTCTaGCAGAAAAATGAATTCTTC +
Preference number: 4 (lower is better)
Translates to: EELRWVDALGDDVITRGVLLGKV*QKNEFF
Trigger: GAAGAATTCATTTTTCTGGCAGACTTTCCCAAGGAG...AACTCCCCTTGTTATGACATCATCCCCCAAAGCATCTACCCACCTGAGTTCTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
ENSMUST00000208607.2
CDS-3UTR GCA 90 bp CTCGGTGGTCCTTTCGACCTTTGTTTTCCAGATGAGGCTATTCGTTCTATGCAGCTCCTTGGGAAAGTCTaGCAGAAAAATGAATTCTTC +
Preference number: 4 (lower is better)
Translates to: LGGPFDLCFPDEAIRSMQLLGKV*QKNEFF
Trigger: GAAGAATTCATTTTTCTGGCAGACTTTCCCAAGGAG...CTGCATAGAACGAATAGCCTCATCTGGAAAACAAAGGTCGAAAGGACCACCGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
CDS-3UTR GCA 90 bp CTCGGTGGTCCTTTCGACCTTTGTTTTCCAGATGAGGCTATTCGTTCTATGCAGCAACATAGCTCTCTGTaGGTGATGCATGATGTTTTT +
Preference number: 4 (lower is better)
Translates to: LGGPFDLCFPDEAIRSMQQHSSL*VMHDVF
Trigger: AAAAACATCATGCATCACGCACAGAGAGCTATGTTG...CTGCATAGAACGAATAGCCTCATCTGGAAAACAAAGGTCGAAAGGACCACCGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
CDS-3UTR GCA 90 bp TTGTGGAACCCTAGGCATTACTGTTTGAGGCACCTTGAGTGTAGTTTGCAGAAATGTTACGTCCAATCATaGCCTGTTCAGAGCATCTCT +
Preference number: 4 (lower is better)
Translates to: LWNPRHYCLRHLECSLQKCYVQS*PVQSIS
Trigger: AGAGATGCTCTGAACAGGGCATGATTGGACGTAACA...TTTCTGCAAACTACACTCAAGGTGCCTCAAACAGTAATGCCTAGGGTTCCACAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207115.2
CDS-3UTR CCA 90 bp GTGCTATTGTCTACACCTCTATTGCTCACTAACAACTTGAAGAAGAACTCAGGTCTGAGAAGCCAAGAATaGGACAGTAGAAGGAGCCGA +
Preference number: 4 (lower is better)
Translates to: VLLSTPLLLTNNLKKNSGLRSQE*DSRRSR
Trigger: TCGGCTCCTTCTACTGTCCCATTCTTGGCTTCTCAG...ACCTGAGTTCTTCTTCAAGTTGTTAGTGAGCAATAGAGGTGTAGACAATAGCAC
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp TATGTGCTATTGTCTACACCTCTATTGCTCACTAACAACTTGAAGAAGAACTCAGTGGCAATGGCGTCATaGATGGTGGCTGAGAAGCCA +
Preference number: 4 (lower is better)
Translates to: YVLLSTPLLLTNNLKKNSVAMAS*MVAEKP
Trigger: TGGCTTCTCAGCCACCATCCATGACGCCATTGCCAC...TGAGTTCTTCTTCAAGTTGTTAGTGAGCAATAGAGGTGTAGACAATAGCACATA
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
CDS-3UTR TCA 90 bp AAGGCACTCAGGATCCGCTATTGTCACAGCAATTGCCAGCTTCTTATCCACATTAGTCTGCCAGAAAAATaGATTCTTCCCTATTGTAGC +
Preference number: 4 (lower is better)
Translates to: KALRIRYCHSNCQLLIHISLPEK*ILPYCS
Trigger: GCTACAATAGGGAAGAATTCATTTTTCTGGCAGACT...AATGTGGATAAGAAGCTGGCAATTGCTGTGACAATAGCGGATCCTGAGTGCCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
CDS-3UTR TCA 90 bp TTGTGGAACCCTAGGCATTACTGTTTGAGGCACCTTGAGTGTAGTTTGCAGAAAGGCACATCAATTAAATaGATCTCCTTGAAAGGGCAC +
Preference number: 4 (lower is better)
Translates to: LWNPRHYCLRHLECSLQKGTSIK*ISLKGH
Trigger: GTGCCCTTTCAAGGAGATTCATTTAATTGATGTGCC...TTTCTGCAAACTACACTCAAGGTGCCTCAAACAGTAATGCCTAGGGTTCCACAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
CDS-3UTR TCA 90 bp GTAGAAGACAACCAGGGCTATAAAGAAGCTGGTAGACACCATAACAATGAAGGACTTGTGAAGGTGTCCTaGTGTGACAATAAGACCACA +
Preference number: 4 (lower is better)
Translates to: VEDNQGYKEAGRHHNNEGLVKVS*CDNKTT
Trigger: TGTGGTCTTATTGTCACATCAGGACACCTTCACAAG...TCCTTCATTGTTATGGTGTCTACCAGCTTCTTTATAGCCCTGGTTGTCTTCTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
ENSMUST00000208607.2
CDS-3UTR TCA 90 bp TATGTGCTATTGTCTACACCTCTATTGCTCACTAACAACTTGAAGAAGAACTCACTGAGTCACAGTTACTaGAAGGCACTCAGGATCCGC +
Preference number: 4 (lower is better)
Translates to: YVLLSTPLLLTNNLKKNSLSHSY*KALRIR
Trigger: GCGGATCCTGAGTGCCTTTCAGTAACTGTGACTCAG...TGAGTTCTTCTTCAAGTTGTTAGTGAGCAATAGAGGTGTAGACAATAGCACATA
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
CDS-3UTR GCA 90 bp GCCATCTTGAAAATAAAAGATTCTGACATTCTGACAGTTAACTACAGCTGTGCTCACGAACCCATCTGCTaGTGCCATGGCTTTTGTCGA +
Preference number: 4 (lower is better)
Translates to: AILKIKDSDILTVNYSCAHEPIC*CHGFCR
Trigger: TCGACAAAAGCCATGGCAGCAGCAGATGGGTTCGTG...AGCACAGCTGTAGTTAACTGTCAGAATGTCAGAATCTTTTATTTTCAAGATGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp AAGCAAAAGGTTTATTTTCCAGCATGTCAGGGTCAACCTTCAATTAGTTCCTCAAGGGCTTATCATACTTaGAGTGCAGCCACAGCAGGT +
Preference number: 4 (lower is better)
Translates to: KQKVYFPACQGQPSISSSRAYHT*SAATAG
Trigger: ACCTGCTGTGGCTGCACTCCAAGTATGATAAGCCCT...TGAGGAACTAATTGAAGGTTGACCCTGACATGCTGGAAAATAAACCTTTTGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR TCA 90 bp GAACAGGATGTAGAAGACAACCAGGGCTATAAAGAAGCTGGTAGACACCATAACACGGTAGAAATTGACTaGGTACATGTAGTTGATCTG +
Preference number: 4 (lower is better)
Translates to: EQDVEDNQGYKEAGRHHNTVEID*VHVVDL
Trigger: CAGATCAACTACATGTACTCAGTCAATTTCTACCGT...GTTATGGTGTCTACCAGCTTCTTTATAGCCCTGGTTGTCTTCTACATCCTGTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
CDS-3UTR TCA 90 bp CCTTTCGACCTTTGTTTTCCAGATGAGGCTATTCGTTCTATGCAGGCCCATATACTGGAAATTAGAATCTaGGAACAGGATGGACTTTTC +
Preference number: 4 (lower is better)
Translates to: PFDLCFPDEAIRSMQAHILEIRI*EQDGLF
Trigger: GAAAAGTCCATCCTGTTCTCAGATTCTAATTTCCAG...TATATGGGCCTGCATAGAACGAATAGCCTCATCTGGAAAACAAAGGTCGAAAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
CDS-3UTR TCA 90 bp GAACAGGATGTAGAAGACAACCAGGGCTATAAAGAAGCTGGTAGACACCATAACAGTCTGCCAGAAAAATaGATTCTTCCCTATTGTAGC +
Preference number: 4 (lower is better)
Translates to: EQDVEDNQGYKEAGRHHNSLPEK*ILPYCS
Trigger: GCTACAATAGGGAAGAATTCATTTTTCTGGCAGACT...GTTATGGTGTCTACCAGCTTCTTTATAGCCCTGGTTGTCTTCTACATCCTGTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
ENSMUST00000208607.2
CDS-3UTR GCA 90 bp CTATTGTCTACACCTCTATTGCTCACTAACAACTTGAAGAAGAACTCAGGTGGGTGGAAGGAAGACTTTTaGATCTTCTGCAGGTTATGG +
Preference number: 4 (lower is better)
Translates to: LLSTPLLLTNNLKKNSGGWKEDF*IFCRLW
Trigger: CCATAACCTGCAGAAGATGCAAAAGTCTTCCTTCCA...CCCACCTGAGTTCTTCTTCAAGTTGTTAGTGAGCAATAGAGGTGTAGACAATAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp GTAGAAGACAACCAGGGCTATAAAGAAGCTGGTAGACACCATAACAATGAAGGACATAGAACCTTTTCTTaGATACGAAGGGCCCTATAC +
Preference number: 4 (lower is better)
Translates to: VEDNQGYKEAGRHHNNEGHRTFS*IRRALY
Trigger: GTATAGGGCCCTTCGTATCCAAGAAAAGGTTCTATG...TCCTTCATTGTTATGGTGTCTACCAGCTTCTTTATAGCCCTGGTTGTCTTCTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
CDS-3UTR GCA 90 bp CTATTGTCTACACCTCTATTGCTCACTAACAACTTGAAGAAGAACTCAGGTGGGCAACATAGCTCTCTGTaGGTGATGCATGATGTTTTT +
Preference number: 4 (lower is better)
Translates to: LLSTPLLLTNNLKKNSGGQHSSL*VMHDVF
Trigger: AAAAACATCATGCATCACGCACAGAGAGCTATGTTG...CCCACCTGAGTTCTTCTTCAAGTTGTTAGTGAGCAATAGAGGTGTAGACAATAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
CDS-3UTR GCA 90 bp CCTTTCGACCTTTGTTTTCCAGATGAGGCTATTCGTTCTATGCAGGCCCATATATATTGTCACAGCAATTaGCAGCTTCTTATCCACATT +
Preference number: 4 (lower is better)
Translates to: PFDLCFPDEAIRSMQAHIYCHSN*QLLIHI
Trigger: AATGTGGATAAGAAGCTGGCAATTGCTGTGACAATA...TATATGGGCCTGCATAGAACGAATAGCCTCATCTGGAAAACAAAGGTCGAAAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207115.2
CDS-3UTR CCA 90 bp GCCATCTTGAAAATAAAAGATTCTGACATTCTGACAGTTAACTACAGCTGTGCTGCGAAAGAGGAAGCATaGCATCTCGGCGTCTTTAAT +
Preference number: 4 (lower is better)
Translates to: AILKIKDSDILTVNYSCAAKEEA*HLGVFN
Trigger: ATTAAAGACGCCGAGATGCCATGCTTCCTCTTTCGC...AGCACAGCTGTAGTTAACTGTCAGAATGTCAGAATCTTTTATTTTCAAGATGGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061193.4
CDS-3UTR TCA 90 bp GCCATCTTGAAAATAAAAGATTCTGACATTCTGACAGTTAACTACAGCTGTGCTCCGGACAGGAAAAGTTaGTTTGCAGGTAGTAAGGAA +
Preference number: 4 (lower is better)
Translates to: AILKIKDSDILTVNYSCAPDRKS*FAGSKE
Trigger: TTCCTTACTACCTGCAAATCAACTTTTCCTGTCCGG...AGCACAGCTGTAGTTAACTGTCAGAATGTCAGAATCTTTTATTTTCAAGATGGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR TCA 90 bp GAGAGCTCCTTTATCTGCTGTGCCATCTTGAAAATAAAAGATTCTGACATTCTGTTAAGAAGGACATCCTaGGTCACAGTTACTGAAAGG +
Preference number: 4 (lower is better)
Translates to: ESSFICCAILKIKDSDILLRRTS*VTVTER
Trigger: CCTTTCAGTAACTGTGACTCAGGATGTCCTTCTTAA...CAGAATGTCAGAATCTTTTATTTTCAAGATGGCACAGCAGATAAAGGAGCTCTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061193.4
CDS-3UTR GCA 90 bp GAGAGCTCCTTTATCTGCTGTGCCATCTTGAAAATAAAAGATTCTGACATTCTGTGGAAGGAAGACTTTTaGATCTTCTGCAGGTTATGG +
Preference number: 4 (lower is better)
Translates to: ESSFICCAILKIKDSDILWKEDF*IFCRLW
Trigger: CCATAACCTGCAGAAGATGCAAAAGTCTTCCTTCCA...CAGAATGTCAGAATCTTTTATTTTCAAGATGGCACAGCAGATAAAGGAGCTCTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR GCA 90 bp CTATTGTCTACACCTCTATTGCTCACTAACAACTTGAAGAAGAACTCAGGTGGGTATTGTCACAGCAATTaGCAGCTTCTTATCCACATT +
Preference number: 4 (lower is better)
Translates to: LLSTPLLLTNNLKKNSGGYCHSN*QLLIHI
Trigger: AATGTGGATAAGAAGCTGGCAATTGCTGTGACAATA...CCCACCTGAGTTCTTCTTCAAGTTGTTAGTGAGCAATAGAGGTGTAGACAATAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
3UTR CAA 72 bp GTCAGGCTTGAGAGCTCCTTTATCTGCTGTGCCATCTaGAAAATAAAAGATTCTGACATTCTGACAGTTAAC +
Preference number: 4 (lower is better)
Translates to: VRLESSFICCAI*KIKDSDILTVN
Trigger: GTTAACTGTCAGAATGTCAGAATCTTTTATTTTCAAGATGGCACAGCAGATAAAGGAGCTCTCAAGCCTGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR TCA 90 bp TATGTGCTATTGTCTACACCTCTATTGCTCACTAACAACTTGAAGAAGAACTCAAGTCTGCCAGAAAAATaGATTCTTCCCTATTGTAGC +
Preference number: 4 (lower is better)
Translates to: YVLLSTPLLLTNNLKKNSSLPEK*ILPYCS
Trigger: GCTACAATAGGGAAGAATTCATTTTTCTGGCAGACT...TGAGTTCTTCTTCAAGTTGTTAGTGAGCAATAGAGGTGTAGACAATAGCACATA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
ENSMUST00000208607.2
CDS-3UTR CCA 90 bp GCCATCTTGAAAATAAAAGATTCTGACATTCTGACAGTTAACTACAGCTGTGCTACAGCCGATGAATATTaGTACCACTTTGAAACCTTG +
Preference number: 4 (lower is better)
Translates to: AILKIKDSDILTVNYSCATADEY*YHFETL
Trigger: CAAGGTTTCAAAGTGGTACCAATATTCATCGGCTGT...AGCACAGCTGTAGTTAACTGTCAGAATGTCAGAATCTTTTATTTTCAAGATGGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061193.4
3UTR CAA 72 bp TGTTCAGAGCATCTCTTTTTATCTATGACTTTAATCTaGTTGATCACTGCGTTGCGATTAAGAAGGACATCC +
Preference number: 4 (lower is better)
Translates to: CSEHLFLSMTLI*LITALRLRRTS
Trigger: GGATGTCCTTCTTAATCGCAACGCAGTGATCAACAAGATTAAAGTCATAGATAAAAAGAGATGCTCTGAACA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
CDS-3UTR GCA 90 bp ATCTTGAAAATAAAAGATTCTGACATTCTGACAGTTAACTACAGCTGTGCTGGTCTCCTTGGGAAAGTCTaGCAGAAAAATGAATTCTTC +
Preference number: 4 (lower is better)
Translates to: ILKIKDSDILTVNYSCAGLLGKV*QKNEFF
Trigger: GAAGAATTCATTTTTCTGGCAGACTTTCCCAAGGAG...ACCAGCACAGCTGTAGTTAACTGTCAGAATGTCAGAATCTTTTATTTTCAAGAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR GCA 90 bp ATCTTGAAAATAAAAGATTCTGACATTCTGACAGTTAACTACAGCTGTGCTGGTTATTGTCACAGCAATTaGCAGCTTCTTATCCACATT +
Preference number: 4 (lower is better)
Translates to: ILKIKDSDILTVNYSCAGYCHSN*QLLIHI
Trigger: AATGTGGATAAGAAGCTGGCAATTGCTGTGACAATA...ACCAGCACAGCTGTAGTTAACTGTCAGAATGTCAGAATCTTTTATTTTCAAGAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061193.4
CDS TCA 90 bp AATGAAGAGCGTGCTCTCGGTGGCAATGGCGTCATGGATGGTGGCTaGGAAGCCAAGAATGGGACAGTAGAAGGAGCCGACCCAGCAACT +
Preference number: 5 (lower is better)
Translates to: NEERALGGNGVMDGG*EAKNGTVEGADPAT
Trigger: AGTTGCTGGGTCGGCTCCTTCTACTGTCCCATTCTTGGCTTCTCAGCCACCATCCATGACGCCATTGCCACCGAGAGCACGCTCTTCATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061193.4
ENSMUST00000207115.2
ENSMUST00000208607.2
ENSMUST00000209126.2
CDS-3UTR CAA 90 bp GACATGAACATTCTAGCAAACCAGAAAGTCCTGGGGAGGTGGCAGGCTGCATTCACCCTGTGCTGCGCATaGGAGCAGCCTCCATCAGAA +
Preference number: 5 (lower is better)
Translates to: DMNILANQKVLGRWQAAFTLCCA*EQPPSE
Trigger: TTCTGATGGAGGCTGCTCCAATGCGCAGCACAGGGT...GAATGCAGCCTGCCACCTCCCCAGGACTTTCTGGTTTGCTAGAATGTTCATGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR CAA 90 bp CCCTGCATAACTGGAAGTGGGAGGGGTGACCCTACAGACCAGACCCACCAACTGTTGATGGTGGACTCCTaGGGAAAGTCTGCCAGAAAA +
Preference number: 5 (lower is better)
Translates to: PCITGSGRGDPTDQTHQLLMVDS*GKSARK
Trigger: TTTTCTGGCAGACTTTCCCAAGGAGTCCACCATCAA...CAGTTGGTGGGTCTGGTCTGTAGGGTCACCCCTCCCACTTCCAGTTATGCAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
CDS-3UTR CAA 90 bp TCCTCAAGGCCAGTGTTGAGGTCAGAGGACAGCTTCACAGAGTCGGCTCTCTCTACCACTGTGAAGGGTTaGGGCAGGTTGTACTCCATC +
Preference number: 5 (lower is better)
Translates to: SSRPVLRSEDSFTESALSTTVKG*GRLYSI
Trigger: GATGGAGTACAACCTGCCCAAACCCTTCACAGTGGT...AGAGAGAGCCGACTCTGTGAAGCTGTCCTCTGACCTCAACACTGGCCTTGAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR CAA 90 bp AGACCCAGGCCTTCACTATGTGAGGCCACACGAGGCAGAACAGGATGTAGAAGAACCACTGTGAAGGGTTaGGGCAGGTTGTACTCCATC +
Preference number: 5 (lower is better)
Translates to: RPRPSLCEATRGRTGCRRTTVKG*GRLYSI
Trigger: GATGGAGTACAACCTGCCCAAACCCTTCACAGTGGT...TCTTCTACATCCTGTTCTGCCTCGTGTGGCCTCACATAGTGAAGGCCTGGGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
CDS CCA 90 bp CTGCCAGAGTCGCCAGTCACCAAGTCTTGGACTAAGAAGAAGGGCTaGAATAAGTCGCGAAAGAGGAAGCATGGCATCTCGGCGTCTTTA +
Preference number: 5 (lower is better)
Translates to: LPESPVTKSWTKKKG*NKSRKRKHGISASL
Trigger: TAAAGACGCCGAGATGCCATGCTTCCTCTTTCGCGACTTATTCCAGCCCTTCTTCTTAGTCCAAGACTTGGTGACTGGCGACTCTGGCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061193.4
ENSMUST00000207115.2
ENSMUST00000208371.2
ENSMUST00000209126.2
CDS-3UTR CAA 90 bp TATGTGAGGCCACACGAGGCAGAACAGGATGTAGAAGACAACCAGGGCTATAAAACCCTGTGCTGCGCATaGGAGCAGCCTCCATCAGAA +
Preference number: 5 (lower is better)
Translates to: YVRPHEAEQDVEDNQGYKTLCCA*EQPPSE
Trigger: TTCTGATGGAGGCTGCTCCAATGCGCAGCACAGGGT...TTTATAGCCCTGGTTGTCTTCTACATCCTGTTCTGCCTCGTGTGGCCTCACATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
CDS-3UTR CAA 90 bp CTTCACAGAGTCGGCTCTCTCTTTAGATCTCATGAGGCCTGGGGATCAAACCCAACCACTGTGAAGGGTTaGGGCAGGTTGTACTCCATC +
Preference number: 5 (lower is better)
Translates to: LHRVGSLFRSHEAWGSNPTTVKG*GRLYSI
Trigger: GATGGAGTACAACCTGCCCAAACCCTTCACAGTGGT...TGGGTTTGATCCCCAGGCCTCATGAGATCTAAAGAGAGAGCCGACTCTGTGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR CAA 90 bp CTCTCTTTAGATCTCATGAGGCCTGGGGATCAAACCCAGGTTGTCAGGCTTGAGAGAATGCCCAAAGGTTaGGTTTTCTCGGCCACACAG +
Preference number: 5 (lower is better)
Translates to: LSLDLMRPGDQTQVVRLERMPKG*VFSATQ
Trigger: CTGTGTGGCCGAGAAAACCAAACCTTTGGGCATTCT...CTCAAGCCTGACAACCTGGGTTTGATCCCCAGGCCTCATGAGATCTAAAGAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR CAA 90 bp AGAGTCGGCTCTCTCTTTAGATCTCATGAGGCCTGGGGATCAAACCCAGGTTGTCGAGTCTGTCAACTTTaGGAACACCTTGGCCACTGT +
Preference number: 5 (lower is better)
Translates to: RVGSLFRSHEAWGSNPGCRVCQL*EHLGHC
Trigger: ACAGTGGCCAAGGTGTTCCAAAAGTTGACAGACTCG...ACAACCTGGGTTTGATCCCCAGGCCTCATGAGATCTAAAGAGAGAGCCGACTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR CAA 90 bp CTTCACTATGTGAGGCCACACGAGGCAGAACAGGATGTAGAAGACAACCAGGGCTTGATGGTGGACTCCTaGGGAAAGTCTGCCAGAAAA +
Preference number: 5 (lower is better)
Translates to: LHYVRPHEAEQDVEDNQGLMVDS*GKSARK
Trigger: TTTTCTGGCAGACTTTCCCAAGGAGTCCACCATCAA...GCCCTGGTTGTCTTCTACATCCTGTTCTGCCTCGTGTGGCCTCACATAGTGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
ENSMUST00000208607.2
CDS-3UTR CAA 90 bp CTCAAGGCCAGTGTTGAGGTCAGAGGACAGCTTCACAGAGTCGGCTCTCTCTTTAGGTGGGTAGATGCTTaGGGGGATGATGTCATAACA +
Preference number: 5 (lower is better)
Translates to: LKASVEVRGQLHRVGSLFRWVDA*GDDVIT
Trigger: TGTTATGACATCATCCCCCAAAGCATCTACCCACCT...AAAGAGAGAGCCGACTCTGTGAAGCTGTCCTCTGACCTCAACACTGGCCTTGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061193.4
CDS-3UTR CAA 90 bp AGGTGGGTAGATGCTTTGGGGGATGATGTCATAACAAGGGGAGTTCTCCAAGCACGAGTCTGTCAACTTTaGGAACACCTTGGCCACTGT +
Preference number: 5 (lower is better)
Translates to: RWVDALGDDVITRGVLQARVCQL*EHLGHC
Trigger: ACAGTGGCCAAGGTGTTCCAAAAGTTGACAGACTCG...TGCTTGGAGAACTCCCCTTGTTATGACATCATCCCCCAAAGCATCTACCCACCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
CDS-3UTR CAA 90 bp TCAAGGCCAGTGTTGAGGTCAGAGGACAGCTTCACAGAGTCGGCTCTCTCTTTATTGATGGTGGACTCCTaGGGAAAGTCTGCCAGAAAA +
Preference number: 5 (lower is better)
Translates to: SRPVLRSEDSFTESALSLLMVDS*GKSARK
Trigger: TTTTCTGGCAGACTTTCCCAAGGAGTCCACCATCAA...TAAAGAGAGAGCCGACTCTGTGAAGCTGTCCTCTGACCTCAACACTGGCCTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR CAA 90 bp AGAGTCGGCTCTCTCTTTAGATCTCATGAGGCCTGGGGATCAAACCCAGGTTGTGCGAGTGTGTTATTGTaGTGGAAGCCCAAGGATTCA +
Preference number: 5 (lower is better)
Translates to: RVGSLFRSHEAWGSNPGCASVLL*WKPKDS
Trigger: TGAATCCTTGGGCTTCCACAACAATAACACACTCGC...ACAACCTGGGTTTGATCCCCAGGCCTCATGAGATCTAAAGAGAGAGCCGACTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR CAA 90 bp TCGGCTCTCTCTTTAGATCTCATGAGGCCTGGGGATCAAACCCAGGTTGTCAGGGTAAACCAGTTGCCCTaGTCTAGGAAGAAAAGATCG +
Preference number: 5 (lower is better)
Translates to: SALSLDLMRPGDQTQVVRVNQLP*SRKKRS
Trigger: CGATCTTTTCTTCCTAGACAAGGGCAACTGGTTTAC...CCTGACAACCTGGGTTTGATCCCCAGGCCTCATGAGATCTAAAGAGAGAGCCGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR CAA 90 bp TCGGCTCTCTCTTTAGATCTCATGAGGCCTGGGGATCAAACCCAGGTTGTCAGGATGGAAGGAAGACTTTaGCATCTTCTGCAGGTTATG +
Preference number: 5 (lower is better)
Translates to: SALSLDLMRPGDQTQVVRMEGRL*HLLQVM
Trigger: CATAACCTGCAGAAGATGCAAAAGTCTTCCTTCCAT...CCTGACAACCTGGGTTTGATCCCCAGGCCTCATGAGATCTAAAGAGAGAGCCGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR CAA 90 bp GTCGGCTCTCTCTTTAGATCTCATGAGGCCTGGGGATCAAACCCAGGTTGTCAGATGGAAGGAAGACTTTaGCATCTTCTGCAGGTTATG +
Preference number: 5 (lower is better)
Translates to: VGSLFRSHEAWGSNPGCQMEGRL*HLLQVM
Trigger: CATAACCTGCAGAAGATGCAAAAGTCTTCCTTCCAT...CTGACAACCTGGGTTTGATCCCCAGGCCTCATGAGATCTAAAGAGAGAGCCGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR CAA 90 bp AGGTGGGTAGATGCTTTGGGGGATGATGTCATAACAAGGGGAGTTCTCCAAGCAGCGAGTGTGTTATTGTaGTGGAAGCCCAAGGATTCA +
Preference number: 5 (lower is better)
Translates to: RWVDALGDDVITRGVLQAASVLL*WKPKDS
Trigger: TGAATCCTTGGGCTTCCACAACAATAACACACTCGC...TGCTTGGAGAACTCCCCTTGTTATGACATCATCCCCCAAAGCATCTACCCACCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
CDS-3UTR CAA 90 bp AGGTGGGTAGATGCTTTGGGGGATGATGTCATAACAAGGGGAGTTCTCCAAGCAACAGCGAGTGTGTTATaGTTGTGGAAGCCCAAGGAT +
Preference number: 5 (lower is better)
Translates to: RWVDALGDDVITRGVLQATASVL*LWKPKD
Trigger: ATCCTTGGGCTTCCACAACAATAACACACTCGCTGT...TGCTTGGAGAACTCCCCTTGTTATGACATCATCCCCCAAAGCATCTACCCACCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
CDS-3UTR CAA 90 bp GATGATGTCATAACAAGGGGAGTTCTCCAAGCACAGCCACCAACTGTGGACTGGGTAAACCAGTTGCCCTaGTCTAGGAAGAAAAGATCG +
Preference number: 5 (lower is better)
Translates to: DDVITRGVLQAQPPTVDWVNQLP*SRKKRS
Trigger: CGATCTTTTCTTCCTAGACAAGGGCAACTGGTTTAC...CCAGTCCACAGTTGGTGGCTGTGCTTGGAGAACTCCCCTTGTTATGACATCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208371.2
CDS-3UTR CAA 90 bp CTCAAGGCCAGTGTTGAGGTCAGAGGACAGCTTCACAGAGTCGGCTCTCTCTTTCTATTGTCACAGCAATaGCCAGCTTCTTATCCACAT +
Preference number: 5 (lower is better)
Translates to: LKASVEVRGQLHRVGSLFLLSQQ*PASYPH
Trigger: ATGTGGATAAGAAGCTGGCAATTGCTGTGACAATAG...AAAGAGAGAGCCGACTCTGTGAAGCTGTCCTCTGACCTCAACACTGGCCTTGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061193.4
CDS-3UTR CAA 90 bp AGACCCAGGCCTTCACTATGTGAGGCCACACGAGGCAGAACAGGATGTAGAAGACTATTGTCACAGCAATaGCCAGCTTCTTATCCACAT +
Preference number: 5 (lower is better)
Translates to: RPRPSLCEATRGRTGCRRLLSQQ*PASYPH
Trigger: ATGTGGATAAGAAGCTGGCAATTGCTGTGACAATAG...TCTTCTACATCCTGTTCTGCCTCGTGTGGCCTCACATAGTGAAGGCCTGGGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
CDS-3UTR CAA 90 bp CTTCACTATGTGAGGCCACACGAGGCAGAACAGGATGTAGAAGACAACCAGGGCCTATTGTCACAGCAATaGCCAGCTTCTTATCCACAT +
Preference number: 5 (lower is better)
Translates to: LHYVRPHEAEQDVEDNQGLLSQQ*PASYPH
Trigger: ATGTGGATAAGAAGCTGGCAATTGCTGTGACAATAG...GCCCTGGTTGTCTTCTACATCCTGTTCTGCCTCGTGTGGCCTCACATAGTGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
CDS GCA 90 bp AAGCCTACCTTCTCGAACTTGTTCAGGACAAGAAGCCAGGTGCAATaGTGTAAAGCATCTTCAGCCCACGACTTCAATGACAGCAATAGC +
Preference number: 5 (lower is better)
Translates to: KPTFSNLFRTRSQVQ*CKASSAHDFNDSNS
Trigger: GCTATTGCTGTCATTGAAGTCGTGGGCTGAAGATGCTTTACAGCATTGCACCTGGCTTCTTGTCCTGAACAAGTTCGAGAAGGTAGGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
ENSMUST00000209126.2
CDS-3UTR CAA 90 bp TTAGATCTCATGAGGCCTGGGGATCAAACCCAGGTTGTCAGGCTTGAGAGCTCCACAGGAAAAGTTGATTaGCAGGTAGTAAGGAAAGCT +
Preference number: 5 (lower is better)
Translates to: LDLMRPGDQTQVVRLESSTGKVD*QVVRKA
Trigger: AGCTTTCCTTACTACCTGCAAATCAACTTTTCCTGT...GGAGCTCTCAAGCCTGACAACCTGGGTTTGATCCCCAGGCCTCATGAGATCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR CAA 90 bp TCCTCAAGGCCAGTGTTGAGGTCAGAGGACAGCTTCACAGAGTCGGCTCTCTCTCAGATGTACAACATGTaGTTCAATGTGTTGAAGAAC +
Preference number: 5 (lower is better)
Translates to: SSRPVLRSEDSFTESALSQMYNM*FNVLKN
Trigger: GTTCTTCAACACATTGAACAACATGTTGTACATCTG...AGAGAGAGCCGACTCTGTGAAGCTGTCCTCTGACCTCAACACTGGCCTTGAGGA
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR CAA 90 bp CTCGGTGGTCCTTTCGACCTTTGTTTTCCAGATGAGGCTATTCGTTCTATGCAGACAGCGAGTGTGTTATaGTTGTGGAAGCCCAAGGAT +
Preference number: 5 (lower is better)
Translates to: LGGPFDLCFPDEAIRSMQTASVL*LWKPKD
Trigger: ATCCTTGGGCTTCCACAACAATAACACACTCGCTGT...CTGCATAGAACGAATAGCCTCATCTGGAAAACAAAGGTCGAAAGGACCACCGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208607.2
CDS-3UTR CAA 90 bp AGACCCAGGCCTTCACTATGTGAGGCCACACGAGGCAGAACAGGATGTAGAAGATCTATGACTTTAATCTaGTTGATCACTGCGTTGCGA +
Preference number: 5 (lower is better)
Translates to: RPRPSLCEATRGRTGCRRSMTLI*LITALR
Trigger: TCGCAACGCAGTGATCAACAAGATTAAAGTCATAGA...TCTTCTACATCCTGTTCTGCCTCGTGTGGCCTCACATAGTGAAGGCCTGGGTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
CDS-3UTR CAA 90 bp TCCTCAAGGCCAGTGTTGAGGTCAGAGGACAGCTTCACAGAGTCGGCTCTCTCTATCATAGAAGTCTTCTaGATGTTACGTCCAATCATG +
Preference number: 5 (lower is better)
Translates to: SSRPVLRSEDSFTESALSIIEVF*MLRPIM
Trigger: CATGATTGGACGTAACATCAAGAAGACTTCTATGAT...AGAGAGAGCCGACTCTGTGAAGCTGTCCTCTGACCTCAACACTGGCCTTGAGGA
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061193.4
CDS-3UTR CAA 90 bp GAGAGCTCCTTTATCTGCTGTGCCATCTTGAAAATAAAAGATTCTGACATTCTGACCCTGTGCTGCGCATaGGAGCAGCCTCCATCAGAA +
Preference number: 5 (lower is better)
Translates to: ESSFICCAILKIKDSDILTLCCA*EQPPSE
Trigger: TTCTGATGGAGGCTGCTCCAATGCGCAGCACAGGGT...CAGAATGTCAGAATCTTTTATTTTCAAGATGGCACAGCAGATAAAGGAGCTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR CAA 90 bp GCAGAACAGGATGTAGAAGACAACCAGGGCTATAAAGAAGCTGGTAGACACCATTTGATGGTGGACTCCTaGGGAAAGTCTGCCAGAAAA +
Preference number: 5 (lower is better)
Translates to: AEQDVEDNQGYKEAGRHHLMVDS*GKSARK
Trigger: TTTTCTGGCAGACTTTCCCAAGGAGTCCACCATCAA...ATGGTGTCTACCAGCTTCTTTATAGCCCTGGTTGTCTTCTACATCCTGTTCTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
ENSMUST00000208607.2
CDS-3UTR CAA 90 bp AAGCAAAAGGTTTATTTTCCAGCATGTCAGGGTCAACCTTCAATTAGTTCCTCAGTAGGTTTCCCAGCCTaGGGAAGGGACCACCTGGTA +
Preference number: 5 (lower is better)
Translates to: KQKVYFPACQGQPSISSSVGFPA*GRDHLV
Trigger: TACCAGGTGGTCCCTTCCCAAGGCTGGGAAACCTAC...TGAGGAACTAATTGAAGGTTGACCCTGACATGCTGGAAAATAAACCTTTTGCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR CAA 90 bp GAAGAACTCAGGTGGGTAGATGCTTTGGGGGATGATGTCATAACAAGGGGAGTTAGTAATCCTTGTCCTTaGTTTTGTGTTGCCACCAGC +
Preference number: 5 (lower is better)
Translates to: EELRWVDALGDDVITRGVSNPCP*FCVATS
Trigger: GCTGGTGGCAACACAAAACAAAGGACAAGGATTACT...AACTCCCCTTGTTATGACATCATCCCCCAAAGCATCTACCCACCTGAGTTCTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
ENSMUST00000208607.2
CDS-3UTR CAA 90 bp TATGTGAGGCCACACGAGGCAGAACAGGATGTAGAAGACAACCAGGGCTATAAAGTAAACCAGTTGCCCTaGTCTAGGAAGAAAAGATCG +
Preference number: 5 (lower is better)
Translates to: YVRPHEAEQDVEDNQGYKVNQLP*SRKKRS
Trigger: CGATCTTTTCTTCCTAGACAAGGGCAACTGGTTTAC...TTTATAGCCCTGGTTGTCTTCTACATCCTGTTCTGCCTCGTGTGGCCTCACATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
ENSMUST00000208607.2
CDS-3UTR CAA 90 bp CTCTCTTTAGATCTCATGAGGCCTGGGGATCAAACCCAGGTTGTCAGGCTTGAGTACCACTTTGAAACCTaGAATAATTCCCCCAAGGTA +
Preference number: 5 (lower is better)
Translates to: LSLDLMRPGDQTQVVRLEYHFET*NNSPKV
Trigger: TACCTTGGGGGAATTATTCAAGGTTTCAAAGTGGTA...CTCAAGCCTGACAACCTGGGTTTGATCCCCAGGCCTCATGAGATCTAAAGAGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061193.4
CDS-3UTR CAA 90 bp GTGAGGCCACACGAGGCAGAACAGGATGTAGAAGACAACCAGGGCTATAAAGAATACCACTTTGAAACCTaGAATAATTCCCCCAAGGTA +
Preference number: 5 (lower is better)
Translates to: VRPHEAEQDVEDNQGYKEYHFET*NNSPKV
Trigger: TACCTTGGGGGAATTATTCAAGGTTTCAAAGTGGTA...TTCTTTATAGCCCTGGTTGTCTTCTACATCCTGTTCTGCCTCGTGTGGCCTCAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
CDS TCA 90 bp GGAAAAGTTGATTTGCAGGTAGTAAGGAAAGCTCAAATAGTTCTCTaGCGGATCGATTGGCGAGTCTGTCAACTTTTGGAACACCTTGGC +
Preference number: 5 (lower is better)
Translates to: GKVDLQVVRKAQIVL*RIDWRVCQLLEHLG
Trigger: GCCAAGGTGTTCCAAAAGTTGACAGACTCGCCAATCGATCCGTCAGAGAACTATTTGAGCTTTCCTTACTACCTGCAAATCAACTTTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
ENSMUST00000209126.2
CDS TCA 90 bp CATCAGAATCTGTACATTTTCCATCTCCCAACGGTAGAAATTGACTaGGTACATGTAGTTGATCTGGACCATGGGCTTCATCCCCATCAG +
Preference number: 5 (lower is better)
Translates to: HQNLYIFHLPTVEID*VHVVDLDHGLHPHQ
Trigger: CTGATGGGGATGAAGCCCATGGTCCAGATCAACTACATGTACTCAGTCAATTTCTACCGTTGGGAGATGGAAAATGTACAGATTCTGATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
ENSMUST00000209126.2
CDS-3UTR CAA 90 bp CACGAGGCAGAACAGGATGTAGAAGACAACCAGGGCTATAAAGAAGCTGGTAGATGTCCTTTGAAAGAGTaGACCATGTATTTGATGGTG +
Preference number: 5 (lower is better)
Translates to: HEAEQDVEDNQGYKEAGRCPLKE*TMYLMV
Trigger: CACCATCAAATACATGGTCAACTCTTTCAAAGGACA...TCTACCAGCTTCTTTATAGCCCTGGTTGTCTTCTACATCCTGTTCTGCCTCGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
ENSMUST00000208607.2
CDS-3UTR CAA 90 bp AAGACAACCAGGGCTATAAAGAAGCTGGTAGACACCATAACAATGAAGGAGGTCAGTAATCCTTGTCCTTaGTTTTGTGTTGCCACCAGC +
Preference number: 5 (lower is better)
Translates to: KTTRAIKKLVDTITMKEVSNPCP*FCVATS
Trigger: GCTGGTGGCAACACAAAACAAAGGACAAGGATTACT...GACCTCCTTCATTGTTATGGTGTCTACCAGCTTCTTTATAGCCCTGGTTGTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
ENSMUST00000208607.2
CDS-3UTR CAA 90 bp CTATTGTCTACACCTCTATTGCTCACTAACAACTTGAAGAAGAACTCAGGTGGGGTAAACCAGTTGCCCTaGTCTAGGAAGAAAAGATCG +
Preference number: 5 (lower is better)
Translates to: LLSTPLLLTNNLKKNSGGVNQLP*SRKKRS
Trigger: CGATCTTTTCTTCCTAGACAAGGGCAACTGGTTTAC...CCCACCTGAGTTCTTCTTCAAGTTGTTAGTGAGCAATAGAGGTGTAGACAATAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
ENSMUST00000208607.2
CDS-3UTR CAA 90 bp GCCATCTTGAAAATAAAAGATTCTGACATTCTGACAGTTAACTACAGCTGTGCTAGAATGCCCAAAGGTTaGGTTTTCTCGGCCACACAG +
Preference number: 5 (lower is better)
Translates to: AILKIKDSDILTVNYSCARMPKG*VFSATQ
Trigger: CTGTGTGGCCGAGAAAACCAAACCTTTGGGCATTCT...AGCACAGCTGTAGTTAACTGTCAGAATGTCAGAATCTTTTATTTTCAAGATGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR CAA 90 bp GAACAGGATGTAGAAGACAACCAGGGCTATAAAGAAGCTGGTAGACACCATAACTGTCCTTTGAAAGAGTaGACCATGTATTTGATGGTG +
Preference number: 5 (lower is better)
Translates to: EQDVEDNQGYKEAGRHHNCPLKE*TMYLMV
Trigger: CACCATCAAATACATGGTCAACTCTTTCAAAGGACA...GTTATGGTGTCTACCAGCTTCTTTATAGCCCTGGTTGTCTTCTACATCCTGTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
ENSMUST00000208607.2
CDS-3UTR CAA 90 bp GAGAGCTCCTTTATCTGCTGTGCCATCTTGAAAATAAAAGATTCTGACATTCTGGCGAGTGTGTTATTGTaGTGGAAGCCCAAGGATTCA +
Preference number: 5 (lower is better)
Translates to: ESSFICCAILKIKDSDILASVLL*WKPKDS
Trigger: TGAATCCTTGGGCTTCCACAACAATAACACACTCGC...CAGAATGTCAGAATCTTTTATTTTCAAGATGGCACAGCAGATAAAGGAGCTCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR CAA 90 bp GAACAGGATGTAGAAGACAACCAGGGCTATAAAGAAGCTGGTAGACACCATAACTACCACTTTGAAACCTaGAATAATTCCCCCAAGGTA +
Preference number: 5 (lower is better)
Translates to: EQDVEDNQGYKEAGRHHNYHFET*NNSPKV
Trigger: TACCTTGGGGGAATTATTCAAGGTTTCAAAGTGGTA...GTTATGGTGTCTACCAGCTTCTTTATAGCCCTGGTTGTCTTCTACATCCTGTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
CDS GCA 90 bp GAAAGAGTTGACCATGTATTTGATGGTGGACTCCTTGGGAAAGTCTaGCAGAAAAATGAATTCTTCCCTATTGTAGCTTTGCAGGATGAA +
Preference number: 5 (lower is better)
Translates to: ERVDHVFDGGLLGKV*QKNEFFPIVALQDE
Trigger: TTCATCCTGCAAAGCTACAATAGGGAAGAATTCATTTTTCTGGCAGACTTTCCCAAGGAGTCCACCATCAAATACATGGTCAACTCTTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000061193.4
ENSMUST00000207115.2
ENSMUST00000208371.2
ENSMUST00000208607.2
ENSMUST00000209126.2
CDS-3UTR CAA 90 bp GAACAGGATGTAGAAGACAACCAGGGCTATAAAGAAGCTGGTAGACACCATAACCAGATGTACAACATGTaGTTCAATGTGTTGAAGAAC +
Preference number: 5 (lower is better)
Translates to: EQDVEDNQGYKEAGRHHNQMYNM*FNVLKN
Trigger: GTTCTTCAACACATTGAACAACATGTTGTACATCTG...GTTATGGTGTCTACCAGCTTCTTTATAGCCCTGGTTGTCTTCTACATCCTGTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
ENSMUST00000208607.2
CDS-3UTR CAA 90 bp GCCATCTTGAAAATAAAAGATTCTGACATTCTGACAGTTAACTACAGCTGTGCTACAGCGAGTGTGTTATaGTTGTGGAAGCCCAAGGAT +
Preference number: 5 (lower is better)
Translates to: AILKIKDSDILTVNYSCATASVL*LWKPKD
Trigger: ATCCTTGGGCTTCCACAACAATAACACACTCGCTGT...AGCACAGCTGTAGTTAACTGTCAGAATGTCAGAATCTTTTATTTTCAAGATGGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR CAA 90 bp GAGAGCTCCTTTATCTGCTGTGCCATCTTGAAAATAAAAGATTCTGACATTCTGAGTAATCCTTGTCCTTaGTTTTGTGTTGCCACCAGC +
Preference number: 5 (lower is better)
Translates to: ESSFICCAILKIKDSDILSNPCP*FCVATS
Trigger: GCTGGTGGCAACACAAAACAAAGGACAAGGATTACT...CAGAATGTCAGAATCTTTTATTTTCAAGATGGCACAGCAGATAAAGGAGCTCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR CAA 90 bp TATGTGCTATTGTCTACACCTCTATTGCTCACTAACAACTTGAAGAAGAACTCAAGTAATCCTTGTCCTTaGTTTTGTGTTGCCACCAGC +
Preference number: 5 (lower is better)
Translates to: YVLLSTPLLLTNNLKKNSSNPCP*FCVATS
Trigger: GCTGGTGGCAACACAAAACAAAGGACAAGGATTACT...TGAGTTCTTCTTCAAGTTGTTAGTGAGCAATAGAGGTGTAGACAATAGCACATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
ENSMUST00000208607.2
CDS-3UTR CAA 90 bp AAGCAAAAGGTTTATTTTCCAGCATGTCAGGGTCAACCTTCAATTAGTTCCTCACTATGCTGTCTTAGCTaGAACATTGTCCTCTTTCGA +
Preference number: 5 (lower is better)
Translates to: KQKVYFPACQGQPSISSSLCCLS*NIVLFR
Trigger: TCGAAAGAGGACAATGTTCAAGCTAAGACAGCATAG...TGAGGAACTAATTGAAGGTTGACCCTGACATGCTGGAAAATAAACCTTTTGCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061193.4
CDS-3UTR CAA 90 bp GTGCTATTGTCTACACCTCTATTGCTCACTAACAACTTGAAGAAGAACTCAGGTCAGATGTACAACATGTaGTTCAATGTGTTGAAGAAC +
Preference number: 5 (lower is better)
Translates to: VLLSTPLLLTNNLKKNSGQMYNM*FNVLKN
Trigger: GTTCTTCAACACATTGAACAACATGTTGTACATCTG...ACCTGAGTTCTTCTTCAAGTTGTTAGTGAGCAATAGAGGTGTAGACAATAGCAC
39% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
ENSMUST00000208607.2
CDS-3UTR CAA 90 bp AAGCAAAAGGTTTATTTTCCAGCATGTCAGGGTCAACCTTCAATTAGTTCCTCATCTATGACTTTAATCTaGTTGATCACTGCGTTGCGA +
Preference number: 5 (lower is better)
Translates to: KQKVYFPACQGQPSISSSSMTLI*LITALR
Trigger: TCGCAACGCAGTGATCAACAAGATTAAAGTCATAGA...TGAGGAACTAATTGAAGGTTGACCCTGACATGCTGGAAAATAAACCTTTTGCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061193.4
CDS-3UTR CAA 90 bp GTGCTATTGTCTACACCTCTATTGCTCACTAACAACTTGAAGAAGAACTCAGGTATCATAGAAGTCTTCTaGATGTTACGTCCAATCATG +
Preference number: 5 (lower is better)
Translates to: VLLSTPLLLTNNLKKNSGIIEVF*MLRPIM
Trigger: CATGATTGGACGTAACATCAAGAAGACTTCTATGAT...ACCTGAGTTCTTCTTCAAGTTGTTAGTGAGCAATAGAGGTGTAGACAATAGCAC
39% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
CDS-3UTR CAA 90 bp GAGAGCTCCTTTATCTGCTGTGCCATCTTGAAAATAAAAGATTCTGACATTCTGCAGATGTACAACATGTaGTTCAATGTGTTGAAGAAC +
Preference number: 5 (lower is better)
Translates to: ESSFICCAILKIKDSDILQMYNM*FNVLKN
Trigger: GTTCTTCAACACATTGAACAACATGTTGTACATCTG...CAGAATGTCAGAATCTTTTATTTTCAAGATGGCACAGCAGATAAAGGAGCTCTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR CAA 90 bp TATGTGCTATTGTCTACACCTCTATTGCTCACTAACAACTTGAAGAAGAACTCATCTATGACTTTAATCTaGTTGATCACTGCGTTGCGA +
Preference number: 5 (lower is better)
Translates to: YVLLSTPLLLTNNLKKNSSMTLI*LITALR
Trigger: TCGCAACGCAGTGATCAACAAGATTAAAGTCATAGA...TGAGTTCTTCTTCAAGTTGTTAGTGAGCAATAGAGGTGTAGACAATAGCACATA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
CDS-3UTR CAA 90 bp ATCTTGAAAATAAAAGATTCTGACATTCTGACAGTTAACTACAGCTGTGCTGGTTGTCCTTTGAAAGAGTaGACCATGTATTTGATGGTG +
Preference number: 5 (lower is better)
Translates to: ILKIKDSDILTVNYSCAGCPLKE*TMYLMV
Trigger: CACCATCAAATACATGGTCAACTCTTTCAAAGGACA...ACCAGCACAGCTGTAGTTAACTGTCAGAATGTCAGAATCTTTTATTTTCAAGAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
CDS-3UTR CAA 90 bp TATGTGCTATTGTCTACACCTCTATTGCTCACTAACAACTTGAAGAAGAACTCAATCATAGAAGTCTTCTaGATGTTACGTCCAATCATG +
Preference number: 5 (lower is better)
Translates to: YVLLSTPLLLTNNLKKNSIIEVF*MLRPIM
Trigger: CATGATTGGACGTAACATCAAGAAGACTTCTATGAT...TGAGTTCTTCTTCAAGTTGTTAGTGAGCAATAGAGGTGTAGACAATAGCACATA
37% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207115.2
ENSMUST00000208371.2
CDS TCA 72 bp CGTGCTCTCGGTGGCAATGGCGTCATGGATGGTGGCTaGGAAGCCAAGAATGGGACAGTAGAAGGAGCCGAC +
Preference number: 6 (lower is better)
Translates to: RALGGNGVMDGG*EAKNGTVEGAD
Trigger: GTCGGCTCCTTCTACTGTCCCATTCTTGGCTTCTCAGCCACCATCCATGACGCCATTGCCACCGAGAGCACG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061193.4
ENSMUST00000207115.2
ENSMUST00000208607.2
ENSMUST00000209126.2
CDS CAA 90 bp TCAGGACGCACATGGCCTCTGCCGGGCAGTACCCTGTGCTGCGCATaGGAGCAGCCTCCATCAGAATCTGTACATTTTCCATCTCCCAAC +
Preference number: 6 (lower is better)
Translates to: SGRTWPLPGSTLCCA*EQPPSESVHFPSPN
Trigger: GTTGGGAGATGGAAAATGTACAGATTCTGATGGAGGCTGCTCCAATGCGCAGCACAGGGTACTGCCCGGCAGAGGCCATGTGCGTCCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061193.4
ENSMUST00000207115.2
ENSMUST00000208607.2
ENSMUST00000209126.2
CDS CCA 72 bp AGAGCGTGCTCTCGGTGGCAATGGCGTCATGGATGGTaGCTGAGAAGCCAAGAATGGGACAGTAGAAGGAGC +
Preference number: 6 (lower is better)
Translates to: RACSRWQWRHGW*LRSQEWDSRRS
Trigger: GCTCCTTCTACTGTCCCATTCTTGGCTTCTCAGCCACCATCCATGACGCCATTGCCACCGAGAGCACGCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061193.4
ENSMUST00000207115.2
ENSMUST00000208607.2
ENSMUST00000209126.2
CDS CAA 72 bp ACATGGCCTCTGCCGGGCAGTACCCTGTGCTGCGCATaGGAGCAGCCTCCATCAGAATCTGTACATTTTCCA +
Preference number: 6 (lower is better)
Translates to: TWPLPGSTLCCA*EQPPSESVHFP
Trigger: TGGAAAATGTACAGATTCTGATGGAGGCTGCTCCAATGCGCAGCACAGGGTACTGCCCGGCAGAGGCCATGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061193.4
ENSMUST00000207115.2
ENSMUST00000208607.2
ENSMUST00000209126.2
CDS CAA 72 bp GCACGTGTGGGTGAAGGAGATCGCCTGGTAGTTCCCTaGGTTCACCACTGTGAAGGGTTTGGGCAGGTTGTA +
Preference number: 6 (lower is better)
Translates to: ARVGEGDRLVVP*VHHCEGFGQVV
Trigger: TACAACCTGCCCAAACCCTTCACAGTGGTGAACCAAGGGAACTACCAGGCGATCTCCTTCACCCACACGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061193.4
ENSMUST00000207115.2
ENSMUST00000208607.2
ENSMUST00000209126.2
CDS CAA 90 bp CCCTCATTCTTGCCAGTGGTGAGGGCTAGGACGTACTCAGAACCATaGCCACTGGCATACACCGGGCACAGTCTCTTAATGCACTCGCTA +
Preference number: 6 (lower is better)
Translates to: PSFLPVVRARTYSEP*PLAYTGHSLLMHSL
Trigger: TAGCGAGTGCATTAAGAGACTGTGCCCGGTGTATGCCAGTGGCAATGGTTCTGAGTACGTCCTAGCCCTCACCACTGGCAAGAATGAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061193.4
ENSMUST00000207115.2
ENSMUST00000208607.2
ENSMUST00000209126.2
CDS CAA 72 bp TTGCCAGTGGTGAGGGCTAGGACGTACTCAGAACCATaGCCACTGGCATACACCGGGCACAGTCTCTTAATG +
Preference number: 6 (lower is better)
Translates to: LPVVRARTYSEP*PLAYTGHSLLM
Trigger: CATTAAGAGACTGTGCCCGGTGTATGCCAGTGGCAATGGTTCTGAGTACGTCCTAGCCCTCACCACTGGCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061193.4
ENSMUST00000207115.2
ENSMUST00000208607.2
ENSMUST00000209126.2
CDS TCA 72 bp TCCCGATGTGAATATAACCCTCATTCTTGCCAGTGGTaGGGGCTAGGACGTACTCAGAACCATTGCCACTGG +
Preference number: 6 (lower is better)
Translates to: SRCEYNPHSCQW*GLGRTQNHCHW
Trigger: CCAGTGGCAATGGTTCTGAGTACGTCCTAGCCCTCACCACTGGCAAGAATGAGGGTTATATTCACATCGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061193.4
ENSMUST00000207115.2
ENSMUST00000208607.2
ENSMUST00000209126.2
CDS TCA 72 bp TGTCCTCGGTGGTCCTTTCGACCTTTGTTTTCCAGATaGGGCTATTCGTTGTGTCCAGCGGGCTGTTGTAAC +
Preference number: 6 (lower is better)
Translates to: CPRWSFRPLFSR*GYSLCPAGCCN
Trigger: GTTACAACAGCCCGCTGGACACAACGAATAGCCTCATCTGGAAAACAAAGGTCGAAAGGACCACCGAGGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061193.4
ENSMUST00000209126.2
CDS CCA 72 bp TCGCCAGTCACCAAGTCTTGGACTAAGAAGAAGGGCTaGAATAAGTCGCGAAAGAGGAAGCATGGCATCTCG +
Preference number: 6 (lower is better)
Translates to: SPVTKSWTKKKG*NKSRKRKHGIS
Trigger: CGAGATGCCATGCTTCCTCTTTCGCGACTTATTCCAGCCCTTCTTCTTAGTCCAAGACTTGGTGACTGGCGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061193.4
ENSMUST00000207115.2
ENSMUST00000208371.2
ENSMUST00000209126.2
CDS CAA 72 bp TTGCATCTTCTGCAGGTTATGGTAGGTTTCCCAGCCTaGGGAAGGGACCACCTGGTATACATCATAGCCACC +
Preference number: 6 (lower is better)
Translates to: LHLLQVMVGFPA*GRDHLVYIIAT
Trigger: GGTGGCTATGATGTATACCAGGTGGTCCCTTCCCAAGGCTGGGAAACCTACCATAACCTGCAGAAGATGCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
ENSMUST00000209126.2
CDS TCA 72 bp GTGGGTCCTTGGCTATCAGAGCTTGTGAAGGTGTCCTaGTGTGACAATAAGACCACAGTGATGGTAAACCAG +
Preference number: 6 (lower is better)
Translates to: VGPWLSELVKVS*CDNKTTVMVNQ
Trigger: CTGGTTTACCATCACTGTGGTCTTATTGTCACATCAGGACACCTTCACAAGCTCTGATAGCCAAGGACCCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061193.4
ENSMUST00000207115.2
ENSMUST00000208371.2
ENSMUST00000209126.2
CDS CAA 72 bp CGATCCTTGGAGAGATGCAAGCCTACCTTCTCGAACTaGTTCAGGACAAGAAGCCAGGTGCAATGCTGTAAA +
Preference number: 6 (lower is better)
Translates to: RSLERCKPTFSN*FRTRSQVQCCK
Trigger: TTTACAGCATTGCACCTGGCTTCTTGTCCTGAACAAGTTCGAGAAGGTAGGCTTGCATCTCTCCAAGGATCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
ENSMUST00000209126.2
CDS GCA 72 bp TTCTCGAACTTGTTCAGGACAAGAAGCCAGGTGCAATaGTGTAAAGCATCTTCAGCCCACGACTTCAATGAC +
Preference number: 6 (lower is better)
Translates to: FSNLFRTRSQVQ*CKASSAHDFND
Trigger: GTCATTGAAGTCGTGGGCTGAAGATGCTTTACAGCATTGCACCTGGCTTCTTGTCCTGAACAAGTTCGAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
ENSMUST00000209126.2
CDS TCA 72 bp CATAGACCTTGGCTATCAGAGCTTGTGAAGGTGTCCTaGTGTGACAATAAGACCACAGTGATGGTAAACCAG +
Preference number: 6 (lower is better)
Translates to: HRPWLSELVKVS*CDNKTTVMVNQ
Trigger: CTGGTTTACCATCACTGTGGTCTTATTGTCACATCAGGACACCTTCACAAGCTCTGATAGCCAAGGTCTATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208607.2
CDS CAA 90 bp GGCTCTTCATTTTCTGTGACAACAGCCATTTGTCCTTTGAAAGAGTaGACCATGTATTTGATGGTGGACTCCTTGGGAAAGTCTGCCAGA +
Preference number: 6 (lower is better)
Translates to: GSSFSVTTAICPLKE*TMYLMVDSLGKSAR
Trigger: TCTGGCAGACTTTCCCAAGGAGTCCACCATCAAATACATGGTCAACTCTTTCAAAGGACAAATGGCTGTTGTCACAGAAAATGAAGAGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208371.2
CDS TCA 72 bp CCAGCTCCTCGATATTCTGTCCCGGACAGGAAAAGTTaGTTTGCAGGTAGTAAGGAAAGCTCAAATAGTTCT +
Preference number: 6 (lower is better)
Translates to: PAPRYSVPDRKS*FAGSKESSNSS
Trigger: AGAACTATTTGAGCTTTCCTTACTACCTGCAAATCAACTTTTCCTGTCCGGGACAGAATATCGAGGAGCTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
ENSMUST00000209126.2
CDS CAA 90 bp AGCTCTTCATTTTCTGTGACAACAGCCATTTGTCCTTTGAAAGAGTaGACCATGTATTTGATGGTGGACTCCTTGGGAAAGTCTGCCAGA +
Preference number: 6 (lower is better)
Translates to: SSSFSVTTAICPLKE*TMYLMVDSLGKSAR
Trigger: TCTGGCAGACTTTCCCAAGGAGTCCACCATCAAATACATGGTCAACTCTTTCAAAGGACAAATGGCTGTTGTCACAGAAAATGAAGAGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207115.2
CDS TCA 72 bp CTGTACATTTTCCATCTCCCAACGGTAGAAATTGACTaGGTACATGTAGTTGATCTGGACCATGGGCTTCAT +
Preference number: 6 (lower is better)
Translates to: LYIFHLPTVEID*VHVVDLDHGLH
Trigger: ATGAAGCCCATGGTCCAGATCAACTACATGTACTCAGTCAATTTCTACCGTTGGGAGATGGAAAATGTACAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061193.4
ENSMUST00000207115.2
ENSMUST00000208607.2
ENSMUST00000209126.2
CDS TCA 72 bp CAGCTCCAAGAGAACATAGTCCTGGAAATTAGAATCTaGGAACAGGATGGACTTTTCATCATAAAAGCCCCC +
Preference number: 6 (lower is better)
Translates to: QLQENIVLEIRI*EQDGLFIIKAP
Trigger: GGGGGCTTTTATGATGAAAAGTCCATCCTGTTCTCAGATTCTAATTTCCAGGACTATGTTCTCTTGGAGCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061193.4
ENSMUST00000207115.2
ENSMUST00000208607.2
ENSMUST00000209126.2
CDS CAA 72 bp ACAGCCATTTGTCCTTTGAAAGAGTTGACCATGTATTaGATGGTGGACTCCTTGGGAAAGTCTGCCAGAAAA +
Preference number: 6 (lower is better)
Translates to: TAICPLKELTMY*MVDSLGKSARK
Trigger: TTTTCTGGCAGACTTTCCCAAGGAGTCCACCATCAAATACATGGTCAACTCTTTCAAAGGACAAATGGCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000061193.4
ENSMUST00000207115.2
ENSMUST00000208371.2
ENSMUST00000208607.2
ENSMUST00000209126.2
CDS CAA 90 bp ATCTCTTCATTTTCTGTGACAACAGCCATTTGTCCTTTGAAAGAGTaGACCATGTATTTGATGGTGGACTCCTTGGGAAAGTCTGCCAGA +
Preference number: 6 (lower is better)
Translates to: ISSFSVTTAICPLKE*TMYLMVDSLGKSAR
Trigger: TCTGGCAGACTTTCCCAAGGAGTCCACCATCAAATACATGGTCAACTCTTTCAAAGGACAAATGGCTGTTGTCACAGAAAATGAAGAGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
ENSMUST00000209126.2
CDS GCA 72 bp GACCATGTATTTGATGGTGGACTCCTTGGGAAAGTCTaGCAGAAAAATGAATTCTTCCCTATTGTAGCTTTG +
Preference number: 6 (lower is better)
Translates to: DHVFDGGLLGKV*QKNEFFPIVAL
Trigger: CAAAGCTACAATAGGGAAGAATTCATTTTTCTGGCAGACTTTCCCAAGGAGTCCACCATCAAATACATGGTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000061193.4
ENSMUST00000207115.2
ENSMUST00000208371.2
ENSMUST00000208607.2
ENSMUST00000209126.2
CDS CAA 72 bp GTCTGCCAGAAAAATGAATTCTTCCCTATTGTAGCTTaGCAGGATGAAGTTGCCCCAGATGTACAACATGTT +
Preference number: 6 (lower is better)
Translates to: VCQKNEFFPIVA*QDEVAPDVQHV
Trigger: AACATGTTGTACATCTGGGGCAACTTCATCCTGCAAAGCTACAATAGGGAAGAATTCATTTTTCTGGCAGAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000061193.4
ENSMUST00000207115.2
ENSMUST00000208371.2
ENSMUST00000208607.2
ENSMUST00000209126.2
CDS CAA 72 bp TTTTCTGTGACAACAGCCATTTGTCCTTTGAAAGAGTaGACCATGTATTTGATGGTGGACTCCTTGGGAAAG +
Preference number: 6 (lower is better)
Translates to: FSVTTAICPLKE*TMYLMVDSLGK
Trigger: CTTTCCCAAGGAGTCCACCATCAAATACATGGTCAACTCTTTCAAAGGACAAATGGCTGTTGTCACAGAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000061193.4
ENSMUST00000207115.2
ENSMUST00000208371.2
ENSMUST00000208607.2
ENSMUST00000209126.2
CDS CAA 90 bp TCTGTGACAACAGCCATTTGTCCTTTGAAAGAGTTGACCATGTATTaGATGGTGGACTCCTTGGGAAAGTCTGCCAGAAAAATGAATTCT +
Preference number: 6 (lower is better)
Translates to: SVTTAICPLKELTMY*MVDSLGKSARKMNS
Trigger: AGAATTCATTTTTCTGGCAGACTTTCCCAAGGAGTCCACCATCAAATACATGGTCAACTCTTTCAAAGGACAAATGGCTGTTGTCACAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000061193.4
ENSMUST00000207115.2
ENSMUST00000208371.2
ENSMUST00000208607.2
ENSMUST00000209126.2
CDS CAA 90 bp AAGTACCAGATCTCTTCATTTTCTGTGACAACAGCCATTTGTCCTTaGAAAGAGTTGACCATGTATTTGATGGTGGACTCCTTGGGAAAG +
Preference number: 6 (lower is better)
Translates to: KYQISSFSVTTAICP*KELTMYLMVDSLGK
Trigger: CTTTCCCAAGGAGTCCACCATCAAATACATGGTCAACTCTTTCAAAGGACAAATGGCTGTTGTCACAGAAAATGAAGAGATCTGGTACTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
ENSMUST00000209126.2
CDS CAA 72 bp GGCTCTCATATCCTATGGCGAATAAGGATTTACCACTaGCATCTCTCTTCAAGAAGCCATTCATATTCACAT +
Preference number: 6 (lower is better)
Translates to: GSHILWRIRIYH*HLSSRSHSYSH
Trigger: ATGTGAATATGAATGGCTTCTTGAAGAGAGATGCAAGTGGTAAATCCTTATTCGCCATAGGATATGAGAGCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061193.4
ENSMUST00000207115.2
ENSMUST00000208607.2
ENSMUST00000209126.2
CDS CCA 72 bp TCAAGAAGCCATTCATATTCACATAGAACCTTTTCTTaGATACGAAGGGCCCTATACCATTGGTATAGATGT +
Preference number: 6 (lower is better)
Translates to: SRSHSYSHRTFS*IRRALYHWYRC
Trigger: ACATCTATACCAATGGTATAGGGCCCTTCGTATCCAAGAAAAGGTTCTATGTGAATATGAATGGCTTCTTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061193.4
ENSMUST00000207115.2
ENSMUST00000208607.2
ENSMUST00000209126.2
CDS CAA 72 bp GTACCAGATCTCTTCATTTTCTGTGACAACAGCCATTaGTCCTTTGAAAGAGTTGACCATGTATTTGATGGT +
Preference number: 6 (lower is better)
Translates to: VPDLFIFCDNSH*SFERVDHVFDG
Trigger: ACCATCAAATACATGGTCAACTCTTTCAAAGGACAAATGGCTGTTGTCACAGAAAATGAAGAGATCTGGTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061193.4
ENSMUST00000208607.2
ENSMUST00000209126.2