Pregenerated sensors for CATSPERB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047014Ensembl transcript IDs: ENSMUST00000055156.5, ENSMUST00000220820.2, ENSMUST00000221241.2
Found 90 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TACACTCTTCCTTGGCAGAGGAGAGTTGGCCTACAGGGAGGGCTCTaGCTCCAGGACTCAGGAGGTGGATCAGAGCTCCAAACTTCTGGA | + |
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Preference number: 1 (lower is better) Translates to: YTLPWQRRVGLQGGL*LQDSGGGSELQTSG Trigger: TCCAGAAGTTTGGAGCTCTGATCCACCTCCTGAGTCCTGGAGTCAGAGCCCTCCCTGTAGGCCAACTCTCCTCTGCCAAGGAAGAGTGTA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220820.2 |
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| 3UTR GCA 90 bp | TCCAGGACTCAGGAGGTGGATCAGAGCTCCAAACTTCTGGACACCTaGACTGTAAGAGGAGAGCTTGCCTGCAGTGAGTGCTCTGACCAC | + |
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Preference number: 1 (lower is better) Translates to: SRTQEVDQSSKLLDT*TVRGELACSECSDH Trigger: GTGGTCAGAGCACTCACTGCAGGCAAGCTCTCCTCTTACAGTGCAGGTGTCCAGAAGTTTGGAGCTCTGATCCACCTCCTGAGTCCTGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220820.2 |
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| 3UTR GCA 90 bp | CTAATGGACTACAACGGATTAGCTACCATGTCTCTGGGATTCTCTTaGCTCTCTGCCTCCCATAATCAAGATCTCAGGTGTACCATTGCA | + |
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Preference number: 1 (lower is better) Translates to: LMDYNGLATMSLGFS*LSASHNQDLRCTIA Trigger: TGCAATGGTACACCTGAGATCTTGATTATGGGAGGCAGAGAGGCAAGAGAATCCCAGAGACATGGTAGCTAATCCGTTGTAGTCCATTAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220820.2 |
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| 3UTR GCA 90 bp | CAAACATTTGCTCACATGAAACTAGTAACAAAATTTGTGCCCTTCTaGCAGACCATTATCAGCTCTGAATTACTAAGCCATTGCTTCAAC | + |
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Preference number: 1 (lower is better) Translates to: QTFAHMKLVTKFVPF*QTIISSELLSHCFN Trigger: GTTGAAGCAATGGCTTAGTAATTCAGAGCTGATAATGGTCTGGCAGAAGGGCACAAATTTTGTTACTAGTTTCATGTGAGCAAATGTTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220820.2 |
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| 3UTR CCA 90 bp | ATGATAAAAATTATCTGTGAGTGGAATAGAAATTCCCATGTGGGATaGAGGTCTGTAGTTTATCGGCAGAGTTTTGATCATATTGAAACC | + |
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Preference number: 1 (lower is better) Translates to: MIKIICEWNRNSHVG*RSVVYRQSFDHIET Trigger: GGTTTCAATATGATCAAAACTCTGCCGATAAACTACAGACCTCCATCCCACATGGGAATTTCTATTCCACTCACAGATAATTTTTATCAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| 3UTR CAA 90 bp | GTGGGGACAAAAGCTCAGGATACACTCTTCCTTGGCAGAGGAGAGTaGGCCTACAGGGAGGGCTCTGACTCCAGGACTCAGGAGGTGGAT | + |
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Preference number: 2 (lower is better) Translates to: VGTKAQDTLFLGRGE*AYREGSDSRTQEVD Trigger: ATCCACCTCCTGAGTCCTGGAGTCAGAGCCCTCCCTGTAGGCCAACTCTCCTCTGCCAAGGAAGAGTGTATCCTGAGCTTTTGTCCCCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220820.2 |
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| 3UTR-3UTR TCA 90 bp | TACTTTTGTATCAATTACAAGAAAATAAGCCGGGCAGTGGTGGCGCACACCTTTCTACAGGGAGGGCTCTaGCTCCAGGACTCAGGAGGT | + |
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Preference number: 2 (lower is better) Translates to: YFCINYKKISRAVVAHTFLQGGL*LQDSGG Trigger: ACCTCCTGAGTCCTGGAGTCAGAGCCCTCCCTGTAG...AAAGGTGTGCGCCACCACTGCCCGGCTTATTTTCTTGTAATTGATACAAAAGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220820.2 |
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| 3UTR-3UTR CCA 90 bp | TACTTTTGTATCAATTACAAGAAAATAAGCCGGGCAGTGGTGGCGCACACCTTTTTGGCAGAGGAGAGTTaGCCTACAGGGAGGGCTCTG | + |
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Preference number: 2 (lower is better) Translates to: YFCINYKKISRAVVAHTFLAEES*PTGRAL Trigger: CAGAGCCCTCCCTGTAGGCCAACTCTCCTCTGCCAA...AAAGGTGTGCGCCACCACTGCCCGGCTTATTTTCTTGTAATTGATACAAAAGTA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000220820.2 |
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| 3UTR-3UTR GCA 90 bp | ATGTCCTGGAAAAGGCAATGGGACTTCGTCGACATAAATCTGAAATTCTTCACTTCTTCAGGTGGTATGTaGCTGCCAGGAGTGTGGTGC | + |
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Preference number: 2 (lower is better) Translates to: MSWKRQWDFVDINLKFFTSSGGM*LPGVWC Trigger: GCACCACACTCCTGGCAGGCACATACCACCTGAAGA...AGTGAAGAATTTCAGATTTATGTCGACGAAGTCCCATTGCCTTTTCCAGGACAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| 3UTR-3UTR GCA 90 bp | TACAAGAAAATAAGCCGGGCAGTGGTGGCGCACACCTTTAATACCAGCAATTGGAGCTCTTTCCAAAAATaGTGCCAGAATTTCCATGCC | + |
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Preference number: 2 (lower is better) Translates to: YKKISRAVVAHTFNTSNWSSFQK*CQNFHA Trigger: GGCATGGAAATTCTGGCAGCATTTTTGGAAAGAGCT...CCAATTGCTGGTATTAAAGGTGTGCGCCACCACTGCCCGGCTTATTTTCTTGTA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000220820.2 |
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| 3UTR-3UTR GCA 90 bp | TACAAGAAAATAAGCCGGGCAGTGGTGGCGCACACCTTTAATACCAGCAATTGGCTGCCAGAATTTCCATaGCCTAAAAGTTTTGAACCA | + |
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Preference number: 2 (lower is better) Translates to: YKKISRAVVAHTFNTSNWLPEFP*PKSFEP Trigger: TGGTTCAAAACTTTTAGGGCATGGAAATTCTGGCAG...CCAATTGCTGGTATTAAAGGTGTGCGCCACCACTGCCCGGCTTATTTTCTTGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000220820.2 |
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| 3UTR-3UTR CCA 90 bp | TACAAGAAAATAAGCCGGGCAGTGGTGGCGCACACCTTTAATACCAGCAATTGGAGCGTCAAAGTTTTCTaGCGTCAGTTTGTGTATGTA | + |
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Preference number: 2 (lower is better) Translates to: YKKISRAVVAHTFNTSNWSVKVF*RQFVYV Trigger: TACATACACAAACTGACGCCAGAAAACTTTGACGCT...CCAATTGCTGGTATTAAAGGTGTGCGCCACCACTGCCCGGCTTATTTTCTTGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220820.2 |
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| 3UTR CAA 90 bp | TGTCTTGTACTTATGCTCCATTTCCGTCCTCCAGCCGTGCCAAAGTaGTATAAGAACCAAGAACCTGTTAGAAACTTCAGGTTTGATTTT | + |
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Preference number: 2 (lower is better) Translates to: CLVLMLHFRPPAVPK*YKNQEPVRNFRFDF Trigger: AAAATCAAACCTGAAGTTTCTAACAGGTTCTTGGTTCTTATACAACTTTGGCACGGCTGGAGGACGGAAATGGAGCATAAGTACAAGACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| 3UTR-3UTR GCA 90 bp | CAGGCTTTCTCAATGAAACTAGAGATTACTAATGGACTACAACGGATTAGCTACAAACTTCTGGACACCTaGACTGTAAGAGGAGAGCTT | + |
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Preference number: 2 (lower is better) Translates to: QAFSMKLEITNGLQRISYKLLDT*TVRGEL Trigger: AAGCTCTCCTCTTACAGTGCAGGTGTCCAGAAGTTT...GTAGCTAATCCGTTGTAGTCCATTAGTAATCTCTAGTTTCATTGAGAAAGCCTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220820.2 |
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| 3UTR-3UTR GCA 90 bp | TTTTTCCTCATATTCACTTCAGTCATGGTAACTAAATACGGAGGTTCTGCGGAGTCTTTCCAAAAATGCTaGCAGAATTTCCATGCCCTA | + |
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Preference number: 2 (lower is better) Translates to: FFLIFTSVMVTKYGGSAESFQKC*QNFHAL Trigger: TAGGGCATGGAAATTCTGGCAGCATTTTTGGAAAGA...CTCCGCAGAACCTCCGTATTTAGTTACCATGACTGAAGTGAATATGAGGAAAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| 3UTR-3UTR CCA 90 bp | CAGGCTTTCTCAATGAAACTAGAGATTACTAATGGACTACAACGGATTAGCTACTTTAATACCAGCAATTaGGAGGCAGCCTTGCTACAT | + |
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Preference number: 2 (lower is better) Translates to: QAFSMKLEITNGLQRISYFNTSN*EAALLH Trigger: ATGTAGCAAGGCTGCCTCCCAATTGCTGGTATTAAA...GTAGCTAATCCGTTGTAGTCCATTAGTAATCTCTAGTTTCATTGAGAAAGCCTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220820.2 |
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| 3UTR-3UTR CCA 90 bp | TTTTTCCTCATATTCACTTCAGTCATGGTAACTAAATACGGAGGTTCTGCGGAGTGGGTATTGTGTGACTaGAAACTTGAAACGATGAAC | + |
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Preference number: 2 (lower is better) Translates to: FFLIFTSVMVTKYGGSAEWVLCD*KLETMN Trigger: GTTCATCGTTTCAAGTTTCCAGTCACACAATACCCA...CTCCGCAGAACCTCCGTATTTAGTTACCATGACTGAAGTGAATATGAGGAAAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| 3UTR-3UTR TCA 90 bp | CAGGCTTTCTCAATGAAACTAGAGATTACTAATGGACTACAACGGATTAGCTACCAGAAGATCTTGTCATaGCTAGTTGTAATTGGAGCT | + |
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Preference number: 2 (lower is better) Translates to: QAFSMKLEITNGLQRISYQKILS*LVVIGA Trigger: AGCTCCAATTACAACTAGTCATGACAAGATCTTCTG...GTAGCTAATCCGTTGTAGTCCATTAGTAATCTCTAGTTTCATTGAGAAAGCCTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220820.2 |
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| 3UTR-3UTR TCA 90 bp | CTAATAGATTTCTTCAATGCCTTCAGTGGGTGGATGTTACGCAGTTGGAATACAAAGAACCAGTGCTATTaGAGTGGAACCTTTTTGAAA | + |
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Preference number: 2 (lower is better) Translates to: LIDFFNAFSGWMLRSWNTKNQCY*SGTFLK Trigger: TTTCAAAAAGGTTCCACTTCAATAGCACTGGTTCTT...TGTATTCCAACTGCGTAACATCCACCCACTGAAGGCATTGAAGAAATCTATTAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| 3UTR-3UTR GCA 90 bp | CAGGCTTTCTCAATGAAACTAGAGATTACTAATGGACTACAACGGATTAGCTACTCTTTCCAAAAATGCTaGCAGAATTTCCATGCCCTA | + |
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Preference number: 2 (lower is better) Translates to: QAFSMKLEITNGLQRISYSFQKC*QNFHAL Trigger: TAGGGCATGGAAATTCTGGCAGCATTTTTGGAAAGA...GTAGCTAATCCGTTGTAGTCCATTAGTAATCTCTAGTTTCATTGAGAAAGCCTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000220820.2 |
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| 3UTR CAA 90 bp | TTCACTTCAGTCATGGTAACTAAATACGGAGGTTCTGCGGAGATTTaGTCTCTTTCATTGAAAATTTCCAAAACAACTGGGTATTGTGTG | + |
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Preference number: 2 (lower is better) Translates to: FTSVMVTKYGGSAEI*SLSLKISKTTGYCV Trigger: CACACAATACCCAGTTGTTTTGGAAATTTTCAATGAAAGAGACAAAATCTCCGCAGAACCTCCGTATTTAGTTACCATGACTGAAGTGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| 3UTR-3UTR TCA 90 bp | TTGTTGAATCCAATAATTACATTGTCTTGTACTTATGCTCCATTTCCGTCCTCCTTTGATTTTATTGCTTaGGGCATAGTAGCCAAGGCA | + |
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Preference number: 2 (lower is better) Translates to: LLNPIITLSCTYAPFPSSFDFIA*GIVAKA Trigger: TGCCTTGGCTACTATGCCTCAAGCAATAAAATCAAA...GGAGGACGGAAATGGAGCATAAGTACAAGACAATGTAATTATTGGATTCAACAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| 3UTR-3UTR CCA 90 bp | TTGTTGAATCCAATAATTACATTGTCTTGTACTTATGCTCCATTTCCGTCCTCCAGCGTCAAAGTTTTCTaGCGTCAGTTTGTGTATGTA | + |
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Preference number: 2 (lower is better) Translates to: LLNPIITLSCTYAPFPSSSVKVF*RQFVYV Trigger: TACATACACAAACTGACGCCAGAAAACTTTGACGCT...GGAGGACGGAAATGGAGCATAAGTACAAGACAATGTAATTATTGGATTCAACAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| 3UTR TCA 72 bp | CCTTGGCAGAGGAGAGTTGGCCTACAGGGAGGGCTCTaGCTCCAGGACTCAGGAGGTGGATCAGAGCTCCAA | + |
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Preference number: 3 (lower is better) Translates to: PWQRRVGLQGGL*LQDSGGGSELQ Trigger: TTGGAGCTCTGATCCACCTCCTGAGTCCTGGAGTCAGAGCCCTCCCTGTAGGCCAACTCTCCTCTGCCAAGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220820.2 |
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| 3UTR GCA 72 bp | CTTCTGGACACCTGCACTGTAAGAGGAGAGCTTGCCTaGAGTGAGTGCTCTGACCACTGGGACACAGGTGAG | + |
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Preference number: 3 (lower is better) Translates to: LLDTCTVRGELA*SECSDHWDTGE Trigger: CTCACCTGTGTCCCAGTGGTCAGAGCACTCACTGCAGGCAAGCTCTCCTCTTACAGTGCAGGTGTCCAGAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220820.2 |
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| 3UTR GCA 72 bp | CAGGAGGTGGATCAGAGCTCCAAACTTCTGGACACCTaGACTGTAAGAGGAGAGCTTGCCTGCAGTGAGTGC | + |
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Preference number: 3 (lower is better) Translates to: QEVDQSSKLLDT*TVRGELACSEC Trigger: GCACTCACTGCAGGCAAGCTCTCCTCTTACAGTGCAGGTGTCCAGAAGTTTGGAGCTCTGATCCACCTCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220820.2 |
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| 3UTR CCA 72 bp | ACTGTCCTTGTGAACTCCGCTAATCCAGTCTTCAGGTaGTATGTGCCTGCCAGGAGTGTGGTGCATAGTCCT | + |
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Preference number: 3 (lower is better) Translates to: TVLVNSANPVFR*YVPARSVVHSP Trigger: AGGACTATGCACCACACTCCTGGCAGGCACATACCACCTGAAGACTGGATTAGCGGAGTTCACAAGGACAGT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| 3UTR-3UTR CAA 90 bp | CAGGCTTTCTCAATGAAACTAGAGATTACTAATGGACTACAACGGATTAGCTACCTTGGCAGAGGAGAGTaGGCCTACAGGGAGGGCTCT | + |
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Preference number: 3 (lower is better) Translates to: QAFSMKLEITNGLQRISYLGRGE*AYREGS Trigger: AGAGCCCTCCCTGTAGGCCAACTCTCCTCTGCCAAG...GTAGCTAATCCGTTGTAGTCCATTAGTAATCTCTAGTTTCATTGAGAAAGCCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220820.2 |
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| 3UTR-3UTR CAA 90 bp | TATTGTGGAACTAGTATAGCTTCAAATCCCAAATCAGGCCTCTTTGCAGGAGGGGTGCAGATTTTCGAGTaGCGTTGTCTATGGGGACAC | + |
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Preference number: 3 (lower is better) Translates to: YCGTSIASNPKSGLFAGGVQIFE*RCLWGH Trigger: GTGTCCCCATAGACAACGCAACTCGAAAATCTGCAC...CCCTCCTGCAAAGAGGCCTGATTTGGGATTTGAAGCTATACTAGTTCCACAATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000220820.2 |
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| 3UTR GCA 72 bp | TACAACGGATTAGCTACCATGTCTCTGGGATTCTCTTaGCTCTCTGCCTCCCATAATCAAGATCTCAGGTGT | + |
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Preference number: 3 (lower is better) Translates to: YNGLATMSLGFS*LSASHNQDLRC Trigger: ACACCTGAGATCTTGATTATGGGAGGCAGAGAGGCAAGAGAATCCCAGAGACATGGTAGCTAATCCGTTGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220820.2 |
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| 3UTR CCA 72 bp | GCCATGGCTGAGGGCTATATAAGCTACTCCATTTTCTaGGGTCGGGGTCTTCCTGAAGTAGTAAGCAATAAA | + |
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Preference number: 3 (lower is better) Translates to: AMAEGYISYSIF*GRGLPEVVSNK Trigger: TTTATTGCTTACTACTTCAGGAAGACCCCGACCCCAGAAAATGGAGTAGCTTATATAGCCCTCAGCCATGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220820.2 |
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| 3UTR CCA 72 bp | GTCAAAAACACCTTGTGTCTTAACTTCCACCAATCCTaGGTTTCCAACCACCATACTGACTGGAGGGATAGG | + |
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Preference number: 3 (lower is better) Translates to: VKNTLCLNFHQS*VSNHHTDWRDR Trigger: CCTATCCCTCCAGTCAGTATGGTGGTTGGAAACCCAGGATTGGTGGAAGTTAAGACACAAGGTGTTTTTGAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| 3UTR-3UTR CAA 90 bp | GTTGCAACAGCTATTAGTGCATGTCCTGGAAAAGGCAATGGGACTTCGTCGACATTTTTCCACTGTATGTaGGTAGGCATAGTCAGAGGT | + |
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Preference number: 3 (lower is better) Translates to: VATAISACPGKGNGTSSTFFHCM*VGIVRG Trigger: ACCTCTGACTATGCCTACCAACATACAGTGGAAAAA...TGTCGACGAAGTCCCATTGCCTTTTCCAGGACATGCACTAATAGCTGTTGCAAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| 3UTR GCA 72 bp | GGTGAGTCCAGGATTTCCCCTAATAGATTTCTTCAATaGCTTCAGTGGGTGGATGTTACGCAGTTGGAATAC | + |
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Preference number: 3 (lower is better) Translates to: GESRISPNRFLQ*LQWVDVTQLEY Trigger: GTATTCCAACTGCGTAACATCCACCCACTGAAGGCATTGAAGAAATCTATTAGGGGAAATCCTGGACTCACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| 3UTR GCA 72 bp | GTCTTGTACTTATGCTCCATTTCCGTCCTCCAGCCGTaGCAAAGTTGTATAAGAACCAAGAACCTGTTAGAA | + |
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Preference number: 3 (lower is better) Translates to: VLYLCSISVLQP*QSCIRTKNLLE Trigger: TTCTAACAGGTTCTTGGTTCTTATACAACTTTGGCACGGCTGGAGGACGGAAATGGAGCATAAGTACAAGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| 3UTR-3UTR CAA 90 bp | TTTTTCCTCATATTCACTTCAGTCATGGTAACTAAATACGGAGGTTCTGCGGAGAACAAGGGCTGTCCTTaGAGTTCTCAATCCCGAAAG | + |
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Preference number: 3 (lower is better) Translates to: FFLIFTSVMVTKYGGSAENKGCP*SSQSRK Trigger: CTTTCGGGATTGAGAACTCAAAGGACAGCCCTTGTT...CTCCGCAGAACCTCCGTATTTAGTTACCATGACTGAAGTGAATATGAGGAAAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| 3UTR-3UTR CAA 90 bp | TACTTTTGTATCAATTACAAGAAAATAAGCCGGGCAGTGGTGGCGCACACCTTTTTTTTCCACTGTATGTaGGTAGGCATAGTCAGAGGT | + |
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Preference number: 3 (lower is better) Translates to: YFCINYKKISRAVVAHTFFFHCM*VGIVRG Trigger: ACCTCTGACTATGCCTACCAACATACAGTGGAAAAA...AAAGGTGTGCGCCACCACTGCCCGGCTTATTTTCTTGTAATTGATACAAAAGTA 42% GC, longest homopolymer 8 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000220820.2 |
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| 3UTR-3UTR CAA 90 bp | TTTTTCCTCATATTCACTTCAGTCATGGTAACTAAATACGGAGGTTCTGCGGAGCATGCCCTAAAAGTTTaGAACCAGCGTCAAAGTTTT | + |
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Preference number: 3 (lower is better) Translates to: FFLIFTSVMVTKYGGSAEHALKV*NQRQSF Trigger: AAAACTTTGACGCTGGTTCAAAACTTTTAGGGCATG...CTCCGCAGAACCTCCGTATTTAGTTACCATGACTGAAGTGAATATGAGGAAAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| 3UTR TCA 72 bp | GAACCTGTTAGAAACTTCAGGTTTGATTTTATTGCTTaGGGCATAGTAGCCAAGGCAGAAGCAGTCCATTTA | + |
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Preference number: 3 (lower is better) Translates to: EPVRNFRFDFIA*GIVAKAEAVHL Trigger: TAAATGGACTGCTTCTGCCTTGGCTACTATGCCTCAAGCAATAAAATCAAACCTGAAGTTTCTAACAGGTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| 3UTR CCA 72 bp | ATTATCTGTGAGTGGAATAGAAATTCCCATGTGGGATaGAGGTCTGTAGTTTATCGGCAGAGTTTTGATCAT | + |
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Preference number: 3 (lower is better) Translates to: IICEWNRNSHVG*RSVVYRQSFDH Trigger: ATGATCAAAACTCTGCCGATAAACTACAGACCTCCATCCCACATGGGAATTTCTATTCCACTCACAGATAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| 3UTR CCA 72 bp | AGGATTTCCCCTAATAGATTTCTTCAATGCCTTCAGTaGGTGGATGTTACGCAGTTGGAATACAAATGCTAT | + |
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Preference number: 3 (lower is better) Translates to: RISPNRFLQCLQ*VDVTQLEYKCY Trigger: ATAGCATTTGTATTCCAACTGCGTAACATCCACCCACTGAAGGCATTGAAGAAATCTATTAGGGGAAATCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| 3UTR-3UTR CAA 90 bp | TTTTTCCTCATATTCACTTCAGTCATGGTAACTAAATACGGAGGTTCTGCGGAGACATTAGCACACTGTTaGTATTTGCCAGTTTCCTTT | + |
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Preference number: 3 (lower is better) Translates to: FFLIFTSVMVTKYGGSAETLAHC*YLPVSF Trigger: AAAGGAAACTGGCAAATACAAACAGTGTGCTAATGT...CTCCGCAGAACCTCCGTATTTAGTTACCATGACTGAAGTGAATATGAGGAAAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| 3UTR TCA 72 bp | TCCAACCACCATACTGACTGGAGGGATAGGAAATGTTaGCATAGCTTTTGGAATAATCTTAAATTGAAAATC | + |
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Preference number: 3 (lower is better) Translates to: SNHHTDWRDRKC*HSFWNNLKLKI Trigger: GATTTTCAATTTAAGATTATTCCAAAAGCTATGTCAACATTTCCTATCCCTCCAGTCAGTATGGTGGTTGGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| 3UTR CAA 72 bp | AAAGCTCAGGATACACTCTTCCTTGGCAGAGGAGAGTaGGCCTACAGGGAGGGCTCTGACTCCAGGACTCAG | + |
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Preference number: 4 (lower is better) Translates to: KAQDTLFLGRGE*AYREGSDSRTQ Trigger: CTGAGTCCTGGAGTCAGAGCCCTCCCTGTAGGCCAACTCTCCTCTGCCAAGGAAGAGTGTATCCTGAGCTTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220820.2 |
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| CDS-3UTR TCA 90 bp | ACTGTCCTTGTGAACTCCGCTAATCCAGTCTTCAGGTGGTATGTGCCTGCCAGGGGCTCTTTGTCACTTTaGTATCGTTCACTTCTGGAT | + |
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Preference number: 4 (lower is better) Translates to: TVLVNSANPVFRWYVPARGSLSL*YRSLLD Trigger: ATCCAGAAGTGAACGATATCAAAGTGACAAAGAGCC...CCTGGCAGGCACATACCACCTGAAGACTGGATTAGCGGAGTTCACAAGGACAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| CDS-3UTR TCA 90 bp | GAGGCTAACAGAATCACAGGAGGAAAAAGCTCCAGCCAGAGACAGCTGCCTTGGAAGAACCCATCCAAATaGTCATCCATCATGATCACG | + |
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Preference number: 4 (lower is better) Translates to: EANRITGGKSSSQRQLPWKNPSK*SSIMIT Trigger: CGTGATCATGATGGATGATCATTTGGATGGGTTCTT...CCAAGGCAGCTGTCTCTGGCTGGAGCTTTTTCCTCCTGTGATTCTGTTAGCCTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000220820.2 |
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| 3UTR CAA 72 bp | ATGTATGTGAAGAGACCGGAGGTGCAGATTTTCGAGTaGCGTTGTCTATGGGGACACCATCCTGATCACAGA | + |
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Preference number: 4 (lower is better) Translates to: MYVKRPEVQIFE*RCLWGHHPDHR Trigger: TCTGTGATCAGGATGGTGTCCCCATAGACAACGCAACTCGAAAATCTGCACCTCCGGTCTCTTCACATACAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220820.2 |
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| CDS-3UTR GCA 90 bp | ACTGTCCTTGTGAACTCCGCTAATCCAGTCTTCAGGTGGTATGTGCCTGCCAGGAAATCCACAAAACTCTaGTCTGGAAAGCTTTATCTG | + |
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Preference number: 4 (lower is better) Translates to: TVLVNSANPVFRWYVPARKSTKL*SGKLYL Trigger: CAGATAAAGCTTTCCAGAGCAGAGTTTTGTGGATTT...CCTGGCAGGCACATACCACCTGAAGACTGGATTAGCGGAGTTCACAAGGACAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| CDS-3UTR CCA 90 bp | ACTGTCCTTGTGAACTCCGCTAATCCAGTCTTCAGGTGGTATGTGCCTGCCAGGATCACTGTGAGTCCTTaGTGTTCATCTTTAAGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: TVLVNSANPVFRWYVPARITVSP*CSSLSS Trigger: AGAACTTAAAGATGAACACCAAGGACTCACAGTGAT...CCTGGCAGGCACATACCACCTGAAGACTGGATTAGCGGAGTTCACAAGGACAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| 3UTR CAA 72 bp | CTTATGCTCCATTTCCGTCCTCCAGCCGTGCCAAAGTaGTATAAGAACCAAGAACCTGTTAGAAACTTCAGG | + |
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Preference number: 4 (lower is better) Translates to: LMLHFRPPAVPK*YKNQEPVRNFR Trigger: CCTGAAGTTTCTAACAGGTTCTTGGTTCTTATACAACTTTGGCACGGCTGGAGGACGGAAATGGAGCATAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| CDS-3UTR CCA 90 bp | GTTGCAACAGCTATTAGTGCATGTCCTGGAAAAGGCAATGGGACTTCGTCGACAACAGAAAGTGGCTTCTaGGATGGAATATCATTCCAA | + |
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Preference number: 4 (lower is better) Translates to: VATAISACPGKGNGTSSTTESGF*DGISFQ Trigger: TTGGAATGATATTCCATCCCAGAAGCCACTTTCTGT...TGTCGACGAAGTCCCATTGCCTTTTCCAGGACATGCACTAATAGCTGTTGCAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| CDS-3UTR CCA 90 bp | TGGAATAGAAATTCCCATGTGGGATGGAGGTCTGTAGTTTATCGGCAGAGTTTTTTAAAGCCACATCATTaGCACAGGGGCTCTTTGTCA | + |
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Preference number: 4 (lower is better) Translates to: WNRNSHVGWRSVVYRQSFLKPHH*HRGSLS Trigger: TGACAAAGAGCCCCTGTGCCAATGATGTGGCTTTAA...AAAACTCTGCCGATAAACTACAGACCTCCATCCCACATGGGAATTTCTATTCCA 43% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| CDS-3UTR TCA 90 bp | TTGTTGAATCCAATAATTACATTGTCTTGTACTTATGCTCCATTTCCGTCCTCCTTGTATGCAGACCTGTaGGAATCCCTTCACCGGAAC | + |
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Preference number: 4 (lower is better) Translates to: LLNPIITLSCTYAPFPSSLYADL*ESLHRN Trigger: GTTCCGGTGAAGGGATTCTCACAGGTCTGCATACAA...GGAGGACGGAAATGGAGCATAAGTACAAGACAATGTAATTATTGGATTCAACAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| CDS-3UTR TCA 90 bp | AAAACACCTTGTGTCTTAACTTCCACCAATCCTGGGTTTCCAACCACCATACTGCATAGATTATCTCTGTaGGGTCATGCCATATGCATT | + |
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Preference number: 4 (lower is better) Translates to: KTPCVLTSTNPGFPTTILHRLSL*GHAICI Trigger: AATGCATATGGCATGACCTCACAGAGATAATCTATG...CAGTATGGTGGTTGGAAACCCAGGATTGGTGGAAGTTAAGACACAAGGTGTTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| CDS-3UTR CCA 90 bp | AAAACACCTTGTGTCTTAACTTCCACCAATCCTGGGTTTCCAACCACCATACTGCACAAAACTCTGCTCTaGAAAGCTTTATCTGTGAAG | + |
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Preference number: 4 (lower is better) Translates to: KTPCVLTSTNPGFPTTILHKTLL*KALSVK Trigger: CTTCACAGATAAAGCTTTCCAGAGCAGAGTTTTGTG...CAGTATGGTGGTTGGAAACCCAGGATTGGTGGAAGTTAAGACACAAGGTGTTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| CDS-3UTR TCA 90 bp | TTGTTGAATCCAATAATTACATTGTCTTGTACTTATGCTCCATTTCCGTCCTCCCGTCCAAGATTCCACTaGAGAATAGGCTCTCGAACA | + |
|
Preference number: 4 (lower is better) Translates to: LLNPIITLSCTYAPFPSSRPRFH*RIGSRT Trigger: TGTTCGAGAGCCTATTCTTCAGTGGAATCTTGGACG...GGAGGACGGAAATGGAGCATAAGTACAAGACAATGTAATTATTGGATTCAACAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| CDS-3UTR TCA 90 bp | AAAACACCTTGTGTCTTAACTTCCACCAATCCTGGGTTTCCAACCACCATACTGTTCCAAGTGGAAGAGTaGATGTTGAAGGAAAATGAA | + |
|
Preference number: 4 (lower is better) Translates to: KTPCVLTSTNPGFPTTILFQVEE*MLKENE Trigger: TTCATTTTCCTTCAACATTCACTCTTCCACTTGGAA...CAGTATGGTGGTTGGAAACCCAGGATTGGTGGAAGTTAAGACACAAGGTGTTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| CDS-3UTR CCA 90 bp | CTAATAGATTTCTTCAATGCCTTCAGTGGGTGGATGTTACGCAGTTGGAATACAAAAACTAGGAAATTTTaGTCGAGGGCTTGGTTTCCC | + |
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Preference number: 4 (lower is better) Translates to: LIDFFNAFSGWMLRSWNTKTRKF*SRAWFP Trigger: GGGAAACCAAGCCCTCGACCAAAATTTCCTAGTTTT...TGTATTCCAACTGCGTAACATCCACCCACTGAAGGCATTGAAGAAATCTATTAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| CDS-3UTR CCA 90 bp | CTAATAGATTTCTTCAATGCCTTCAGTGGGTGGATGTTACGCAGTTGGAATACAAAGTGGCTTCTGGGATaGAATATCATTCCAAGTGGA | + |
|
Preference number: 4 (lower is better) Translates to: LIDFFNAFSGWMLRSWNTKWLLG*NIIPSG Trigger: TCCACTTGGAATGATATTCCATCCCAGAAGCCACTT...TGTATTCCAACTGCGTAACATCCACCCACTGAAGGCATTGAAGAAATCTATTAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| CDS-3UTR TCA 90 bp | TTTTTCCTCATATTCACTTCAGTCATGGTAACTAAATACGGAGGTTCTGCGGAGACACAAGGTAACCAGTaGAGAAATGGTTCTTTACTG | + |
|
Preference number: 4 (lower is better) Translates to: FFLIFTSVMVTKYGGSAETQGNQ*RNGSLL Trigger: CAGTAAAGAACCATTTCTTCACTGGTTACCTTGTGT...CTCCGCAGAACCTCCGTATTTAGTTACCATGACTGAAGTGAATATGAGGAAAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| CDS-3UTR GCA 90 bp | ATAGCTTCAAATCCCAAATCAGGCCTCTTTCCAAAAATGCTGCCAGAATTTCCAAACAACTTGATTGTATaGAGACCTGTGAGAATCCCT | + |
|
Preference number: 4 (lower is better) Translates to: IASNPKSGLFPKMLPEFPNNLIV*RPVRIP Trigger: AGGGATTCTCACAGGTCTGCATACAATCAAGTTGTT...TGGAAATTCTGGCAGCATTTTTGGAAAGAGGCCTGATTTGGGATTTGAAGCTAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| CDS-3UTR TCA 90 bp | TTTTTCCTCATATTCACTTCAGTCATGGTAACTAAATACGGAGGTTCTGCGGAGGAAAACACCATTAGATaGTGGTTTCATCATAAAGCC | + |
|
Preference number: 4 (lower is better) Translates to: FFLIFTSVMVTKYGGSAEENTIR*WFHHKA Trigger: GGCTTTATGATGAAACCATCATCTAATGGTGTTTTC...CTCCGCAGAACCTCCGTATTTAGTTACCATGACTGAAGTGAATATGAGGAAAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| CDS-3UTR GCA 90 bp | TTGTTGAATCCAATAATTACATTGTCTTGTACTTATGCTCCATTTCCGTCCTCCCCACTGTTCTACAGCTaGAATGTCTGTGTTTACAGT | + |
|
Preference number: 4 (lower is better) Translates to: LLNPIITLSCTYAPFPSSPLFYS*NVCVYS Trigger: ACTGTAAACACAGACATTGCAGCTGTAGAACAGTGG...GGAGGACGGAAATGGAGCATAAGTACAAGACAATGTAATTATTGGATTCAACAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| CDS-3UTR TCA 90 bp | TTTTCATTGAGGTCAAAAACACCTTGTGTCTTAACTTCCACCAATCCTGGGTTTATCCTTCATGCATTGTaGTCTTTATCATCCACTGTT | + |
|
Preference number: 4 (lower is better) Translates to: FSLRSKTPCVLTSTNPGFILHAL*SLSSTV Trigger: AACAGTGGATGATAAAGATCACAATGCATGAAGGAT...AAACCCAGGATTGGTGGAAGTTAAGACACAAGGTGTTTTTGACCTCAATGAAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| CDS TCA 90 bp | GGATGGAATATCATTCCAAGTGGAAGAGTGAATGTTGAAGGAAAATaGAAACTAGGAAATTTTGGTCGAGGGCTTGGTTTCCCATCCTTG | + |
|
Preference number: 5 (lower is better) Translates to: GWNIIPSGRVNVEGK*KLGNFGRGLGFPSL Trigger: CAAGGATGGGAAACCAAGCCCTCGACCAAAATTTCCTAGTTTTCATTTTCCTTCAACATTCACTCTTCCACTTGGAATGATATTCCATCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055156.5 ENSMUST00000221241.2 |
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| CDS-3UTR CAA 90 bp | GGAACTAGTATAGCTTCAAATCCCAAATCAGGCCTCTTTCCAAAAATGCTGCCATTATCTGTGAAGTGGTaGGATAACGAAGATCACTAC | + |
|
Preference number: 5 (lower is better) Translates to: GTSIASNPKSGLFPKMLPLSVKW*DNEDHY Trigger: GTAGTGATCTTCGTTATCCAACCACTTCACAGATAA...TGGCAGCATTTTTGGAAAGAGGCCTGATTTGGGATTTGAAGCTATACTAGTTCC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| CDS-3UTR CAA 90 bp | TTGTTGAATCCAATAATTACATTGTCTTGTACTTATGCTCCATTTCCGTCCTCCCAGCGGACTTTCAAATaGTCCATGGTAAGGAACAAC | + |
|
Preference number: 5 (lower is better) Translates to: LLNPIITLSCTYAPFPSSQRTFK*SMVRNN Trigger: GTTGTTCCTTACCATGGACAATTTGAAAGTCCGCTG...GGAGGACGGAAATGGAGCATAAGTACAAGACAATGTAATTATTGGATTCAACAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| CDS-3UTR CAA 90 bp | CTAATAGATTTCTTCAATGCCTTCAGTGGGTGGATGTTACGCAGTTGGAATACATATCACTGTGAGTCCTaGGTGTTCATCTTTAAGTTC | + |
|
Preference number: 5 (lower is better) Translates to: LIDFFNAFSGWMLRSWNTYHCES*VFIFKF Trigger: GAACTTAAAGATGAACACCAAGGACTCACAGTGATA...TGTATTCCAACTGCGTAACATCCACCCACTGAAGGCATTGAAGAAATCTATTAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221241.2 |
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| CDS GCA 90 bp | AACCAGATCTATCACTGTGAGTCCTTGGTGTTCATCTTTAAGTTCTaGATAGATTATCTCTGTGAGGTCATGCCATATGCATTCCTTATA | + |
|
Preference number: 5 (lower is better) Translates to: NQIYHCESLVFIFKF*IDYLCEVMPYAFLI Trigger: TATAAGGAATGCATATGGCATGACCTCACAGAGATAATCTATGCAGAACTTAAAGATGAACACCAAGGACTCACAGTGATAGATCTGGTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055156.5 ENSMUST00000221241.2 |
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| CDS CCA 90 bp | TTTCAAATCCACAAAACTCTGCTCTGGAAAGCTTTATCTGTGAAGTaGTTGGATAACGAAGATCACTACTTACATAAAGACCCAAAGAGG | + |
|
Preference number: 5 (lower is better) Translates to: FQIHKTLLWKALSVK*LDNEDHYLHKDPKR Trigger: CCTCTTTGGGTCTTTATGTAAGTAGTGATCTTCGTTATCCAACCACTTCACAGATAAAGCTTTCCAGAGCAGAGTTTTGTGGATTTGAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055156.5 ENSMUST00000221241.2 |
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| CDS TCA 90 bp | ATAAGGTCCCCTCAGTATCATAAATGTTTAATCCTTCATGCATTGTaGTCTTTATCATCCACTGTTCTACAGCTGCAATGTCTGTGTTTA | + |
|
Preference number: 5 (lower is better) Translates to: IRSPQYHKCLILHAL*SLSSTVLQLQCLCL Trigger: TAAACACAGACATTGCAGCTGTAGAACAGTGGATGATAAAGATCACAATGCATGAAGGATTAAACATTTATGATACTGAGGGGACCTTAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055156.5 ENSMUST00000221241.2 |
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| CDS GCA 90 bp | TTGTTACATGGTGTGAGAATAAGTTACACAGCATTTCAAAAGTATTaGCACCATCCATTGAAACCCATATTTGACTGCCATAAACATACA | + |
|
Preference number: 5 (lower is better) Translates to: LLHGVRISYTAFQKY*HHPLKPIFDCHKHT Trigger: TGTATGTTTATGGCAGTCAAATATGGGTTTCAATGGATGGTGGCAATACTTTTGAAATGCTGTGTAACTTATTCTCACACCATGTAACAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055156.5 |
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| CDS CAA 72 bp | CAGCGGACTTTCAAATTGTCCATGGTAAGGAACAACTaGATTGTATGCAGACCTGTGAGAATCCCTTCACCG | + |
|
Preference number: 6 (lower is better) Translates to: QRTFKLSMVRNN*IVCRPVRIPSP Trigger: CGGTGAAGGGATTCTCACAGGTCTGCATACAATCAAGTTGTTCCTTACCATGGACAATTTGAAAGTCCGCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055156.5 ENSMUST00000221241.2 |
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| CDS CAA 72 bp | AAAGCCACATCATTGGCACAGGGGCTCTTTGTCACTTaGATATCGTTCACTTCTGGATATAAATCTCTAACC | + |
|
Preference number: 6 (lower is better) Translates to: KATSLAQGLFVT*ISFTSGYKSLT Trigger: GGTTAGAGATTTATATCCAGAAGTGAACGATATCAAAGTGACAAAGAGCCCCTGTGCCAATGATGTGGCTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055156.5 ENSMUST00000221241.2 |
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| CDS CAA 90 bp | AAGCCTATTAAAGCCACATCATTGGCACAGGGGCTCTTTGTCACTTaGATATCGTTCACTTCTGGATATAAATCTCTAACCTCCATTTCT | + |
|
Preference number: 6 (lower is better) Translates to: KPIKATSLAQGLFVT*ISFTSGYKSLTSIS Trigger: AGAAATGGAGGTTAGAGATTTATATCCAGAAGTGAACGATATCAAAGTGACAAAGAGCCCCTGTGCCAATGATGTGGCTTTAATAGGCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055156.5 ENSMUST00000221241.2 |
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| CDS CAA 90 bp | CCCATCCTTGAGCATAGCTACAGTGACATAGGTCTCTTTGGTATCTaGCACATTGAAAAGATAAATTCCACTGTCTGTTTCTTGGTCAAT | + |
|
Preference number: 6 (lower is better) Translates to: PILEHSYSDIGLFGI*HIEKINSTVCFLVN Trigger: ATTGACCAAGAAACAGACAGTGGAATTTATCTTTTCAATGTGCAAGATACCAAAGAGACCTATGTCACTGTAGCTATGCTCAAGGATGGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055156.5 ENSMUST00000221241.2 |
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| CDS GCA 72 bp | TATCACTGTGAGTCCTTGGTGTTCATCTTTAAGTTCTaGATAGATTATCTCTGTGAGGTCATGCCATATGCA | + |
|
Preference number: 6 (lower is better) Translates to: YHCESLVFIFKF*IDYLCEVMPYA Trigger: TGCATATGGCATGACCTCACAGAGATAATCTATGCAGAACTTAAAGATGAACACCAAGGACTCACAGTGATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055156.5 ENSMUST00000221241.2 |
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| CDS TCA 72 bp | ATCATTCCAAGTGGAAGAGTGAATGTTGAAGGAAAATaGAAACTAGGAAATTTTGGTCGAGGGCTTGGTTTC | + |
|
Preference number: 6 (lower is better) Translates to: IIPSGRVNVEGK*KLGNFGRGLGF Trigger: GAAACCAAGCCCTCGACCAAAATTTCCTAGTTTTCATTTTCCTTCAACATTCACTCTTCCACTTGGAATGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055156.5 ENSMUST00000221241.2 |
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| CDS GCA 72 bp | ATGCATTGTGATCTTTATCATCCACTGTTCTACAGCTaGAATGTCTGTGTTTACAGTGATGTTTTGTCTAGG | + |
|
Preference number: 6 (lower is better) Translates to: MHCDLYHPLFYS*NVCVYSDVLSR Trigger: CCTAGACAAAACATCACTGTAAACACAGACATTGCAGCTGTAGAACAGTGGATGATAAAGATCACAATGCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055156.5 ENSMUST00000221241.2 |
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| CDS CCA 72 bp | CACAAAACTCTGCTCTGGAAAGCTTTATCTGTGAAGTaGTTGGATAACGAAGATCACTACTTACATAAAGAC | + |
|
Preference number: 6 (lower is better) Translates to: HKTLLWKALSVK*LDNEDHYLHKD Trigger: GTCTTTATGTAAGTAGTGATCTTCGTTATCCAACCACTTCACAGATAAAGCTTTCCAGAGCAGAGTTTTGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055156.5 ENSMUST00000221241.2 |
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| CDS CCA 72 bp | TATAGTCAACCCTTTCAAATCCACAAAACTCTGCTCTaGAAAGCTTTATCTGTGAAGTGGTTGGATAACGAA | + |
|
Preference number: 6 (lower is better) Translates to: YSQPFQIHKTLL*KALSVKWLDNE Trigger: TTCGTTATCCAACCACTTCACAGATAAAGCTTTCCAGAGCAGAGTTTTGTGGATTTGAAAGGGTTGACTATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055156.5 ENSMUST00000221241.2 |
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| CDS CAA 72 bp | AAAACTCTGCTCTGGAAAGCTTTATCTGTGAAGTGGTaGGATAACGAAGATCACTACTTACATAAAGACCCA | + |
|
Preference number: 6 (lower is better) Translates to: KTLLWKALSVKW*DNEDHYLHKDP Trigger: TGGGTCTTTATGTAAGTAGTGATCTTCGTTATCCAACCACTTCACAGATAAAGCTTTCCAGAGCAGAGTTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055156.5 ENSMUST00000221241.2 |
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| CDS CAA 72 bp | GAGCATAGCTACAGTGACATAGGTCTCTTTGGTATCTaGCACATTGAAAAGATAAATTCCACTGTCTGTTTC | + |
|
Preference number: 6 (lower is better) Translates to: EHSYSDIGLFGI*HIEKINSTVCF Trigger: GAAACAGACAGTGGAATTTATCTTTTCAATGTGCAAGATACCAAAGAGACCTATGTCACTGTAGCTATGCTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055156.5 ENSMUST00000221241.2 |
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| CDS CAA 90 bp | GTGAGAATAAGTTACACAGCATTTCAAAAGTATTGCCACCATCCATaGAAACCCATATTTGACTGCCATAAACATACAGAAAGTGGCTTC | + |
|
Preference number: 6 (lower is better) Translates to: VRISYTAFQKYCHHP*KPIFDCHKHTESGF Trigger: GAAGCCACTTTCTGTATGTTTATGGCAGTCAAATATGGGTTTCAATGGATGGTGGCAATACTTTTGAAATGCTGTGTAACTTATTCTCAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055156.5 |
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| CDS TCA 72 bp | AAATCCACAAAACTCTGCTCTGGAAAGCTTTATCTGTaGAGTGGTTGGATAACGAAGATCACTACTTACATA | + |
|
Preference number: 6 (lower is better) Translates to: KSTKLCSGKLYL*SGWITKITTYI Trigger: TATGTAAGTAGTGATCTTCGTTATCCAACCACTTCACAGATAAAGCTTTCCAGAGCAGAGTTTTGTGGATTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055156.5 ENSMUST00000221241.2 |
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| CDS CAA 72 bp | TTGCACATTGAAAAGATAAATTCCACTGTCTGTTTCTaGGTCAATAAGGAATGTTATCACACGCGGAATGGA | + |
|
Preference number: 6 (lower is better) Translates to: LHIEKINSTVCF*VNKECYHTRNG Trigger: TCCATTCCGCGTGTGATAACATTCCTTATTGACCAAGAAACAGACAGTGGAATTTATCTTTTCAATGTGCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055156.5 ENSMUST00000221241.2 |
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| CDS TCA 72 bp | CCTCAGTATCATAAATGTTTAATCCTTCATGCATTGTaGTCTTTATCATCCACTGTTCTACAGCTGCAATGT | + |
|
Preference number: 6 (lower is better) Translates to: PQYHKCLILHAL*SLSSTVLQLQC Trigger: ACATTGCAGCTGTAGAACAGTGGATGATAAAGATCACAATGCATGAAGGATTAAACATTTATGATACTGAGG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055156.5 ENSMUST00000221241.2 |
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| CDS TCA 72 bp | GTTACACAGCATTTCAAAAGTATTGCCACCATCCATTaGAACCCATATTTGACTGCCATAAACATACAGAAA | + |
|
Preference number: 6 (lower is better) Translates to: VTQHFKSIATIH*NPYLTAINIQK Trigger: TTTCTGTATGTTTATGGCAGTCAAATATGGGTTTCAATGGATGGTGGCAATACTTTTGAAATGCTGTGTAAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055156.5 |
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| CDS CAA 72 bp | AGTTACACAGCATTTCAAAAGTATTGCCACCATCCATaGAAACCCATATTTGACTGCCATAAACATACAGAA | + |
|
Preference number: 6 (lower is better) Translates to: SYTAFQKYCHHP*KPIFDCHKHTE Trigger: TTCTGTATGTTTATGGCAGTCAAATATGGGTTTCAATGGATGGTGGCAATACTTTTGAAATGCTGTGTAACT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055156.5 |
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| CDS CAA 72 bp | AATATCCCCAGTTCACTATATGTAGTTAAGCCTGCCTaGGTCGTCAAAATTCTTCCATCTTCTACAATAAAA | + |
|
Preference number: 6 (lower is better) Translates to: NIPSSLYVVKPA*VVKILPSSTIK Trigger: TTTTATTGTAGAAGATGGAAGAATTTTGACGACCAAGGCAGGCTTAACTACATATAGTGAACTGGGGATATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055156.5 |
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