Pregenerated sensors for CAT (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027187Ensembl transcript IDs: ENSMUST00000028610.10, ENSMUST00000111168.4
Found 103 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGTGTGTGTGTGGTATGTGTGTTGTATTGTATATATACCAGACCATaGGGTAATAGGAGAATACACTATTCTCGCCAAGATTTTTATCTT | + |
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Preference number: 1 (lower is better) Translates to: CVCVVCVLYCIYTRP*GNRRIHYSRQDFYL Trigger: AAGATAAAAATCTTGGCGAGAATAGTGTATTCTCCTATTACCTCATGGTCTGGTATATATACAATACAACACACATACCACACACACACA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| 3UTR-3UTR TCA 90 bp | ACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGAGAGACACATTATACAGAGCTaGAAGCAACCAAACACGGTC | + |
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Preference number: 2 (lower is better) Translates to: TDTMEALAAGAFIVTAERHIIQS*KQPNTV Trigger: GACCGTGTTTGGTTGCTTTCAGCTCTGTATAATGTG...TCTCTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| 3UTR-3UTR GCA 90 bp | AAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGAGAAGAATCTGATTAGCTaGACAGCACAGCACAGCACA | + |
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Preference number: 2 (lower is better) Translates to: KTDTMEALAAGAFIVTAEKNLIS*TAQHST Trigger: TGTGCTGTGCTGTGCTGTGCAGCTAATCAGATTCTT...CTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| 3UTR-3UTR CCA 90 bp | AAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGAGATCAAGTCATGTTTCTaGCTAGAACACCTTTCTTGT | + |
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Preference number: 2 (lower is better) Translates to: KTDTMEALAAGAFIVTAEIKSCF*LEHLSC Trigger: ACAAGAAAGGTGTTCTAGCCAGAAACATGACTTGAT...CTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| 3UTR-3UTR CCA 90 bp | CTTCACATTCCACATTATACAGAGCTGAAAGCAACCAAACACGGTCCTTCCATGACGGCATCAAAAGCATaGTTATCATTCACTCTAGAA | + |
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Preference number: 2 (lower is better) Translates to: LHIPHYTELKATKHGPSMTASKA*LSFTLE Trigger: TTCTAGAGTGAATGATAACCATGCTTTTGATGCCGT...CATGGAAGGACCGTGTTTGGTTGCTTTCAGCTCTGTATAATGTGGAATGTGAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| 3UTR CCA 72 bp | TCAGTGCGCCAGCAGGCCATCCAAAGACAGACACCATaGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTG | + |
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Preference number: 3 (lower is better) Translates to: SVRQQAIQRQTP*RLWPLALLLLL Trigger: CAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGGATGGCCTGCTGGCGCACTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| 3UTR CCA 72 bp | CAGCAGGCCATCCAAAGACAGACACCATGGAGGCTCTaGCCGCTGGCGCTTTTATTGTTACTGCAGAGAGAG | + |
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Preference number: 3 (lower is better) Translates to: QQAIQRQTPWRL*PLALLLLLQRE Trigger: CTCTCTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGGATGGCCTGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| 3UTR-3UTR CAA 90 bp | CCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGATGCAAGTATGGTTTaGCTTATAAGGACCTTAGAA | + |
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Preference number: 3 (lower is better) Translates to: PKTDTMEALAAGAFIVTADASMV*LIRTLE Trigger: TTCTAAGGTCCTTATAAGCAAAACCATACTTGCATC...TGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| 3UTR-3UTR CAA 90 bp | ACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGAGAGAGTGCTAAAGTTACTTTaGGAAGACATGATGCAAGTA | + |
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Preference number: 3 (lower is better) Translates to: TDTMEALAAGAFIVTAERVLKLL*EDMMQV Trigger: TACTTGCATCATGTCTTCCAAAAGTAACTTTAGCAC...TCTCTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| 3UTR TCA 72 bp | GGTAATCTCTACTTCACATTCCACATTATACAGAGCTaGAAGCAACCAAACACGGTCCTTCCATGTAGATCA | + |
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Preference number: 3 (lower is better) Translates to: GNLYFTFHIIQS*KQPNTVLPCRS Trigger: TGATCTACATGGAAGGACCGTGTTTGGTTGCTTTCAGCTCTGTATAATGTGGAATGTGAAGTAGAGATTACC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| 3UTR-3UTR CAA 90 bp | CTTCACATTCCACATTATACAGAGCTGAAAGCAACCAAACACGGTCCTTCCATGGGTATGTGTGTTGTATaGTATATATACCAGACCATG | + |
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Preference number: 3 (lower is better) Translates to: LHIPHYTELKATKHGPSMGMCVV*YIYQTM Trigger: CATGGTCTGGTATATATACAATACAACACACATACC...CATGGAAGGACCGTGTTTGGTTGCTTTCAGCTCTGTATAATGTGGAATGTGAAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| 3UTR TCA 72 bp | GTGGTATGTGTGTTGTATTGTATATATACCAGACCATaGGGTAATAGGAGAATACACTATTCTCGCCAAGAT | + |
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Preference number: 3 (lower is better) Translates to: VVCVLYCIYTRP*GNRRIHYSRQD Trigger: ATCTTGGCGAGAATAGTGTATTCTCCTATTACCTCATGGTCTGGTATATATACAATACAACACACATACCAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS-3UTR TCA 90 bp | CAGTGCGCCAGCAGGCCATCCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGGCTGTGCTCCAGGGCTaGGCGCTGCTGCTCTGGTGC | + |
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Preference number: 4 (lower is better) Translates to: QCASRPSKDRHHGGSGRWAVLQG*ALLLWC Trigger: GCACCAGAGCAGCAGCGCTCAGCCCTGGAGCACAGC...CCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGGATGGCCTGCTGGCGCACTG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS-3UTR GCA 90 bp | CAGTGCGCCAGCAGGCCATCCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGCCAGAAGAGCCTGGATaGGGGCCCCATAGTCAGGGT | + |
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Preference number: 4 (lower is better) Translates to: QCASRPSKDRHHGGSGRWPEEPG*GPHSQG Trigger: ACCCTGACTATGGGGCCCGCATCCAGGCTCTTCTGG...CCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGGATGGCCTGCTGGCGCACTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS-3UTR CCA 90 bp | AGCAGGCCATCCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATGCTTCATCTGGTCGCTaGCTGGGTCCCGACTGTCCG | + |
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Preference number: 4 (lower is better) Translates to: SRPSKDRHHGGSGRWRFYASSGR*LGPDCP Trigger: CGGACAGTCGGGACCCAGCCAGCGACCAGATGAAGC...ATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGGATGGCCTGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS-3UTR CCA 90 bp | AGCAGGCCATCCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATCATCTGGTCGCTGGCTaGGTCCCGACTGTCCGACAT | + |
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Preference number: 4 (lower is better) Translates to: SRPSKDRHHGGSGRWRFYHLVAG*VPTVRH Trigger: ATGTCGGACAGTCGGGACCCAGCCAGCGACCAGATG...ATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGGATGGCCTGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS-3UTR CCA 90 bp | AGCAGGCCATCCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATGCATTTTGTCAGGGCTaGGCTCGATGCCAGGGGGCA | + |
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Preference number: 4 (lower is better) Translates to: SRPSKDRHHGGSGRWRFYAFCQG*ARCQGA Trigger: TGCCCCCTGGCATCGAGCCCAGCCCTGACAAAATGC...ATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGGATGGCCTGCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS-3UTR CCA 90 bp | CAGTGCGCCAGCAGGCCATCCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGCTTCAGGTGAGTCTGTaGGTTTCTCTTCTGGCTATG | + |
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Preference number: 4 (lower is better) Translates to: QCASRPSKDRHHGGSGRWLQVSL*VSLLAM Trigger: CATAGCCAGAAGAGAAACCCACAGACTCACCTGAAG...CCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGGATGGCCTGCTGGCGCACTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS-3UTR TCA 90 bp | ACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGAGAGAGTGAAAACCACATCCTaGACGAGGAGGGGCCCTCGG | + |
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Preference number: 4 (lower is better) Translates to: TDTMEALAAGAFIVTAERVKTTS*TRRGPR Trigger: CCGAGGGCCCCTCCTCGTTCAGGATGTGGTTTTCAC...TCTCTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS-3UTR TCA 90 bp | ACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGAGAGACCATTCATGTGCCGGTaGCCATCGGGAATCCCTCGG | + |
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Preference number: 4 (lower is better) Translates to: TDTMEALAAGAFIVTAERPFMCR*PSGIPR Trigger: CCGAGGGATTCCCGATGGTCACCGGCACATGAATGG...TCTCTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS-3UTR GCA 90 bp | ACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGAGAGACTCTGCGAGGCCCGCTaGTCCTTCCACTGCTTCATC | + |
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Preference number: 4 (lower is better) Translates to: TDTMEALAAGAFIVTAERLCEAR*SFHCFI Trigger: GATGAAGCAGTGGAAGGAGCAGCGGGCCTCGCAGAG...TCTCTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS-3UTR GCA 90 bp | AGCAGGCCATCCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATCCACCCTGGTTGTCATaGATGCACATGGGGCCATCA | + |
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Preference number: 4 (lower is better) Translates to: SRPSKDRHHGGSGRWRFYPPWLS*MHMGPS Trigger: TGATGGCCCCATGTGCATGCATGACAACCAGGGTGG...ATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGGATGGCCTGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS-3UTR CCA 90 bp | ACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGAGAGACATCACGCTGGTAGTTaGCCACTCGAGCGCGGTAGG | + |
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Preference number: 4 (lower is better) Translates to: TDTMEALAAGAFIVTAERHHAGS*PLERGR Trigger: CCTACCGCGCTCGAGTGGCCAACTACCAGCGTGATG...TCTCTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS-3UTR GCA 90 bp | AGCAGGCCATCCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATCTGAGCAAGCCTTCCTaGCTCTCCAACAGGCAAGTT | + |
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Preference number: 4 (lower is better) Translates to: SRPSKDRHHGGSGRWRFYLSKPS*LSNRQV Trigger: AACTTGCCTGTTGGAGAGGCAGGAAGGCTTGCTCAG...ATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGGATGGCCTGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS-3UTR CCA 90 bp | AGCAGGCCATCCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTCATGCATGCACATaGGGCCATCACGCTGGTAGT | + |
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Preference number: 4 (lower is better) Translates to: SRPSKDRHHGGSGRWRFYCHACT*GHHAGS Trigger: ACTACCAGCGTGATGGCCCCATGTGCATGCATGACA...ATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGGATGGCCTGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS-3UTR TCA 90 bp | CCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAAGCCTGACTCTCCAGTaGCTGTGGAGAATCGAACGG | + |
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Preference number: 4 (lower is better) Translates to: PKTDTMEALAAGAFIVTASLTLQ*LWRIER Trigger: CCGTTCGATTCTCCACAGTCACTGGAGAGTCAGGCT...TGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS-3UTR TCA 90 bp | AGCAGGCCATCCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTCAGGATCCTTCAGGTaGGTCTGTGGGTTTCTCTTC | + |
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Preference number: 4 (lower is better) Translates to: SRPSKDRHHGGSGRWRFYSGSFR*VCGFLF Trigger: GAAGAGAAACCCACAGACTCACCTGAAGGATCCTGA...ATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGGATGGCCTGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS-3UTR CCA 90 bp | ACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGAGAGATTGGGGGCACCACCCTaGTTGTCATGCATGCACATG | + |
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Preference number: 4 (lower is better) Translates to: TDTMEALAAGAFIVTAERLGAPP*LSCMHM Trigger: CATGTGCATGCATGACAACCAGGGTGGTGCCCCCAA...TCTCTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS-3UTR TCA 90 bp | CCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGTGCCATCTCGTCAGTaGAAACCACATCCTGAACGA | + |
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Preference number: 4 (lower is better) Translates to: PKTDTMEALAAGAFIVTAVPSRQ*KPHPER Trigger: TCGTTCAGGATGTGGTTTTCACTGACGAGATGGCAC...TGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS-3UTR GCA 90 bp | CCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCATGCCAGGGGGCATATTaGTTGGGTCAAAAGCCATCT | + |
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Preference number: 4 (lower is better) Translates to: PKTDTMEALAAGAFIVTACQGAY*LGQKPS Trigger: AGATGGCTTTTGACCCAAGCAATATGCCCCCTGGCA...TGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS-3UTR CCA 90 bp | AGCAGGCCATCCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTGGGTTTCTCTTCTaGCTATGGATAAAGGATGGA | + |
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Preference number: 4 (lower is better) Translates to: SRPSKDRHHGGSGRWRFYCGFLF*LWIKDG Trigger: TCCATCCTTTATCCATAGCCAGAAGAGAAACCCACA...ATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGGATGGCCTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| 3UTR CAA 72 bp | CAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATaGTTACTGCAGAGAGAGCTGGTAATCTCTACTTCA | + |
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Preference number: 4 (lower is better) Translates to: QTPWRLWPLALL*LLQRELVISTS Trigger: TGAAGTAGAGATTACCAGCTCTCTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS-3UTR TCA 90 bp | CCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCACAACTTGAAGGTGTGTaGTCCATAGCCATTCATGTG | + |
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Preference number: 4 (lower is better) Translates to: PKTDTMEALAAGAFIVTAQLEGV*SIAIHV Trigger: CACATGAATGGCTATGGATCACACACCTTCAAGTTG...TGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS-3UTR GCA 90 bp | CTTCACATTCCACATTATACAGAGCTGAAAGCAACCAAACACGGTCCTTCCATGCGCTGCTCCTTCCACTaGTTCATCTGGTCGCTGGCT | + |
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Preference number: 4 (lower is better) Translates to: LHIPHYTELKATKHGPSMRCSFH*FIWSLA Trigger: AGCCAGCGACCAGATGAAGCAGTGGAAGGAGCAGCG...CATGGAAGGACCGTGTTTGGTTGCTTTCAGCTCTGTATAATGTGGAATGTGAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS-3UTR CCA 90 bp | CTTCACATTCCACATTATACAGAGCTGAAAGCAACCAAACACGGTCCTTCCATGGTATCTGCAGATAGTTaGGTCCCAGGCGGTGGCGGT | + |
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Preference number: 4 (lower is better) Translates to: LHIPHYTELKATKHGPSMVSADS*VPGGGG Trigger: ACCGCCACCGCCTGGGACCCAACTATCTGCAGATAC...CATGGAAGGACCGTGTTTGGTTGCTTTCAGCTCTGTATAATGTGGAATGTGAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS-3UTR CCA 90 bp | ACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGAGAGAAACCAGTTTGCCAACTaGTATAAGAGGGTAGTCCTT | + |
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Preference number: 4 (lower is better) Translates to: TDTMEALAAGAFIVTAERNQFAN*YKRVVL Trigger: AAGGACTACCCTCTTATACCAGTTGGCAAACTGGTT...TCTCTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS-3UTR GCA 90 bp | CCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCATCTTGTAATGGAACTTaGAATAGACTGCCTCTCCAT | + |
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Preference number: 4 (lower is better) Translates to: PKTDTMEALAAGAFIVTASCNGT*NRLPLH Trigger: ATGGAGAGGCAGTCTATTGCAAGTTCCATTACAAGA...TGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS-3UTR CCA 90 bp | ACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGAGAGAGCTATGGATAAAGGATaGAAACAATATGGCATCCCT | + |
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Preference number: 4 (lower is better) Translates to: TDTMEALAAGAFIVTAERAMDKG*KQYGIP Trigger: AGGGATGCCATATTGTTTCCATCCTTTATCCATAGC...TCTCTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS-3UTR GCA 90 bp | CTTCACATTCCACATTATACAGAGCTGAAAGCAACCAAACACGGTCCTTCCATGAGTGTAAAATTTCACTaGAAACCCCCGAGGGTCACG | + |
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Preference number: 4 (lower is better) Translates to: LHIPHYTELKATKHGPSMSVKFH*KPPRVT Trigger: CGTGACCCTCGGGGGTTTGCAGTGAAATTTTACACT...CATGGAAGGACCGTGTTTGGTTGCTTTCAGCTCTGTATAATGTGGAATGTGAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS-3UTR CCA 90 bp | AAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGAGTTTCTCTTCTGGCTATaGATAAAGGATGGAAACAAT | + |
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Preference number: 4 (lower is better) Translates to: KTDTMEALAAGAFIVTAEFLFWL*IKDGNN Trigger: ATTGTTTCCATCCTTTATCCATAGCCAGAAGAGAAA...CTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS-3UTR CCA 90 bp | CCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAATCAAATGGATTAAATaGGAAAGTTTCTGCCTCCTT | + |
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Preference number: 4 (lower is better) Translates to: PKTDTMEALAAGAFIVTAIKWIK*ESFCLL Trigger: AAGGAGGCAGAAACTTTCCCATTTAATCCATTTGAT...TGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS-3UTR CCA 90 bp | AAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGAGCTTGGTCAGATCAAATaGATTAAATGGGAAAGTTTC | + |
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Preference number: 4 (lower is better) Translates to: KTDTMEALAAGAFIVTAELGQIK*IKWESF Trigger: GAAACTTTCCCATTTAATCCATTTGATCTGACCAAG...CTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS-3UTR TCA 90 bp | CTTCACATTCCACATTATACAGAGCTGAAAGCAACCAAACACGGTCCTTCCATGGAATCCCTCGGTCACTaGACAAGAAAGAAACCTGAT | + |
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Preference number: 4 (lower is better) Translates to: LHIPHYTELKATKHGPSMESLGH*TRKKPD Trigger: ATCAGGTTTCTTTCTTGTTCAGTGACCGAGGGATTC...CATGGAAGGACCGTGTTTGGTTGCTTTCAGCTCTGTATAATGTGGAATGTGAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS-3UTR GCA 90 bp | CTTCACATTCCACATTATACAGAGCTGAAAGCAACCAAACACGGTCCTTCCATGAAATGGGAAAGTTTCTaGCTCCTTAAAAGTCATGAC | + |
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Preference number: 4 (lower is better) Translates to: LHIPHYTELKATKHGPSMKWESF*LLKSHD Trigger: GTCATGACTTTTAAGGAGGCAGAAACTTTCCCATTT...CATGGAAGGACCGTGTTTGGTTGCTTTCAGCTCTGTATAATGTGGAATGTGAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| 3UTR CAA 72 bp | ATAGGAGAATACACTATTCTCGCCAAGATTTTTATCTaGTCTAATCAAGTCATGTTTCTGGCTAGAACACCT | + |
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Preference number: 4 (lower is better) Translates to: IGEYTILAKIFI*SNQVMFLARTP Trigger: AGGTGTTCTAGCCAGAAACATGACTTGATTAGACAAGATAAAAATCTTGGCGAGAATAGTGTATTCTCCTAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS GCA 90 bp | TTCCCGCCTCCGGTGGTCAGGACATCAGGTCTCTGCGAGGCCCGCTaGTCCTTCCACTGCTTCATCTGGTCGCTGGCTGGGTCCCGACTG | + |
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Preference number: 5 (lower is better) Translates to: FPPPVVRTSGLCEAR*SFHCFIWSLAGSRL Trigger: CAGTCGGGACCCAGCCAGCGACCAGATGAAGCAGTGGAAGGAGCAGCGGGCCTCGCAGAGACCTGATGTCCTGACCACCGGAGGCGGGAA 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028610.10 ENSMUST00000111168.4 |
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| CDS TCA 90 bp | ACTGGACGCTGTGCTCCAGGGCTGAGCGCTGCTGCTCTGGTGCGCTaGAGCTGTTGGGGTAATAGTTGGGGGCACCACCCTGGTTGTCAT | + |
|
Preference number: 5 (lower is better) Translates to: TGRCAPGLSAAALVR*SCWGNSWGHHPGCH Trigger: ATGACAACCAGGGTGGTGCCCCCAACTATTACCCCAACAGCTTCAGCGCACCAGAGCAGCAGCGCTCAGCCCTGGAGCACAGCGTCCAGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
||
| CDS CCA 90 bp | CCACTCGAGCGCGGTAGGGACAGTTCACAGGTATCTGCAGATAGTTaGGTCCCAGGCGGTGGCGGTGAGTGTCCGGGTAGGCAAAAAGGC | + |
|
Preference number: 5 (lower is better) Translates to: PLERGRDSSQVSADS*VPGGGGECPGRQKG Trigger: GCCTTTTTGCCTACCCGGACACTCACCGCCACCGCCTGGGACCCAACTATCTGCAGATACCTGTGAACTGTCCCTACCGCGCTCGAGTGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
||
| CDS CCA 90 bp | TGGGGTAATAGTTGGGGGCACCACCCTGGTTGTCATGCATGCACATaGGGCCATCACGCTGGTAGTTGGCCACTCGAGCGCGGTAGGGAC | + |
|
Preference number: 5 (lower is better) Translates to: WGNSWGHHPGCHACT*GHHAGSWPLERGRD Trigger: GTCCCTACCGCGCTCGAGTGGCCAACTACCAGCGTGATGGCCCCATGTGCATGCATGACAACCAGGGTGGTGCCCCCAACTATTACCCCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
||
| CDS CCA 90 bp | GGGCCCTCGGGACCCCGCGGTCATGATATTAAGTTTATCTCCTATTaGGTTCCCGCCTCCGGTGGTCAGGACATCAGGTCTCTGCGAGGC | + |
|
Preference number: 5 (lower is better) Translates to: GPSGPRGHDIKFISY*VPASGGQDIRSLRG Trigger: GCCTCGCAGAGACCTGATGTCCTGACCACCGGAGGCGGGAACCCAATAGGAGATAAACTTAATATCATGACCGCGGGGTCCCGAGGGCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028610.10 ENSMUST00000111168.4 |
||
| CDS-3UTR CAA 90 bp | CAGTGCGCCAGCAGGCCATCCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGTTCTCAGCGTTGTACTaGTCCAGAAGAGCCTGGATG | + |
|
Preference number: 5 (lower is better) Translates to: QCASRPSKDRHHGGSGRWFSALY*SRRAWM Trigger: CATCCAGGCTCTTCTGGACAAGTACAACGCTGAGAA...CCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGGATGGCCTGCTGGCGCACTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
||
| CDS TCA 90 bp | GAAGCGTTTCACATCTACAGCGCACTGGACGCTGTGCTCCAGGGCTaGGCGCTGCTGCTCTGGTGCGCTGAAGCTGTTGGGGTAATAGTT | + |
|
Preference number: 5 (lower is better) Translates to: EAFHIYSALDAVLQG*ALLLWCAEAVGVIV Trigger: AACTATTACCCCAACAGCTTCAGCGCACCAGAGCAGCAGCGCTCAGCCCTGGAGCACAGCGTCCAGTGCGCTGTAGATGTGAAACGCTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
||
| CDS GCA 90 bp | TTAGCACTGTTGAAGCGTTTCACATCTACAGCGCACTGGACGCTGTaGTCCAGGGCTGAGCGCTGCTGCTCTGGTGCGCTGAAGCTGTTG | + |
|
Preference number: 5 (lower is better) Translates to: LALLKRFTSTAHWTL*SRAERCCSGALKLL Trigger: CAACAGCTTCAGCGCACCAGAGCAGCAGCGCTCAGCCCTGGAGCACAGCGTCCAGTGCGCTGTAGATGTGAAACGCTTCAACAGTGCTAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
||
| CDS CCA 90 bp | CACCCTGGTTGTCATGCATGCACATGGGGCCATCACGCTGGTAGTTaGCCACTCGAGCGCGGTAGGGACAGTTCACAGGTATCTGCAGAT | + |
|
Preference number: 5 (lower is better) Translates to: HPGCHACTWGHHAGS*PLERGRDSSQVSAD Trigger: ATCTGCAGATACCTGTGAACTGTCCCTACCGCGCTCGAGTGGCCAACTACCAGCGTGATGGCCCCATGTGCATGCATGACAACCAGGGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
||
| CDS-3UTR CAA 90 bp | AAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGAGGGGGCACCACCCTGGTaGTCATGCATGCACATGGGG | + |
|
Preference number: 5 (lower is better) Translates to: KTDTMEALAAGAFIVTAEGAPPW*SCMHMG Trigger: CCCCATGTGCATGCATGACAACCAGGGTGGTGCCCC...CTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
||
| CDS CCA 90 bp | TTGTCTTCATTAGCACTGTTGAAGCGTTTCACATCTACAGCGCACTaGACGCTGTGCTCCAGGGCTGAGCGCTGCTGCTCTGGTGCGCTG | + |
|
Preference number: 5 (lower is better) Translates to: LSSLALLKRFTSTAH*TLCSRAERCCSGAL Trigger: CAGCGCACCAGAGCAGCAGCGCTCAGCCCTGGAGCACAGCGTCCAGTGCGCTGTAGATGTGAAACGCTTCAACAGTGCTAATGAAGACAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
||
| CDS GCA 90 bp | TCCCTTCGCAGCCATGTGAGAGCCGGCCTGCGTGTAGGTGTGAATTaGGTTCTTAGGCTTCTCAGCGTTGTACTTGTCCAGAAGAGCCTG | + |
|
Preference number: 5 (lower is better) Translates to: SLRSHVRAGLRVGVN*VLRLLSVVLVQKSL Trigger: CAGGCTCTTCTGGACAAGTACAACGCTGAGAAGCCTAAGAACGCAATTCACACCTACACGCAGGCCGGCTCTCACATGGCTGCGAAGGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028610.10 ENSMUST00000111168.4 |
||
| CDS TCA 90 bp | CATAGCCATTCATGTGCCGGTGACCATCGGGAATCCCTCGGTCACTaGACAAGAAAGAAACCTGATGGAGAGACTCGGGACGAAGACTCC | + |
|
Preference number: 5 (lower is better) Translates to: HSHSCAGDHRESLGH*TRKKPDGETRDEDS Trigger: GGAGTCTTCGTCCCGAGTCTCTCCATCAGGTTTCTTTCTTGTTCAGTGACCGAGGGATTCCCGATGGTCACCGGCACATGAATGGCTATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
||
| CDS-3UTR CAA 90 bp | ACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGAGAGAAAGCACCTGCTCCTTTaGCGTGTACCACTCTCTCAG | + |
|
Preference number: 5 (lower is better) Translates to: TDTMEALAAGAFIVTAERKHLLL*RVPLSQ Trigger: CTGAGAGAGTGGTACACGCAAAAGGAGCAGGTGCTT...TCTCTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
||
| CDS-3UTR CAA 90 bp | CCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCACCAACAGGCAAGTTTTaGATGCCCTGGTCGGTCTTG | + |
|
Preference number: 5 (lower is better) Translates to: PKTDTMEALAAGAFIVTAPTGKF*MPWSVL Trigger: CAAGACCGACCAGGGCATCAAAAACTTGCCTGTTGG...TGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
||
| CDS-3UTR CAA 90 bp | ACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGAGAGAATGCCAGGGGGCATATaGCTTGGGTCAAAAGCCATC | + |
|
Preference number: 5 (lower is better) Translates to: TDTMEALAAGAFIVTAERMPGGI*LGSKAI Trigger: GATGGCTTTTGACCCAAGCAATATGCCCCCTGGCAT...TCTCTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
||
| CDS GCA 90 bp | AAGATCTCGGAGGCCATAATCCGGATCTTCCTGAGCAAGCCTTCCTaGCTCTCCAACAGGCAAGTTTTTGATGCCCTGGTCGGTCTTGTA | + |
|
Preference number: 5 (lower is better) Translates to: KISEAIIRIFLSKPS*LSNRQVFDALVGLV Trigger: TACAAGACCGACCAGGGCATCAAAAACTTGCCTGTTGGAGAGGCAGGAAGGCTTGCTCAGGAAGATCCGGATTATGGCCTCCGAGATCTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
||
| CDS-3UTR CAA 90 bp | AGCAGGCCATCCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATAAGAAAATAGGGGTGTaGTTTCCCACAAGATCCCAG | + |
|
Preference number: 5 (lower is better) Translates to: SRPSKDRHHGGSGRWRFYKKIGV*FPTRSQ Trigger: CTGGGATCTTGTGGGAAACAACACCCCTATTTTCTT...ATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGGATGGCCTGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
||
| CDS-3UTR CAA 90 bp | ACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGAGAGATTAGGCTTCTCAGCGTaGTACTTGTCCAGAAGAGCC | + |
|
Preference number: 5 (lower is better) Translates to: TDTMEALAAGAFIVTAERLGFSA*YLSRRA Trigger: GGCTCTTCTGGACAAGTACAACGCTGAGAAGCCTAA...TCTCTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
||
| CDS TCA 90 bp | GCAATAGACTGCCTCTCCATCTGCATTAACCAACTTGAAGGTGTGTaGTCCATAGCCATTCATGTGCCGGTGACCATCGGGAATCCCTCG | + |
|
Preference number: 5 (lower is better) Translates to: AIDCLSICINQLEGV*SIAIHVPVTIGNPS Trigger: CGAGGGATTCCCGATGGTCACCGGCACATGAATGGCTATGGATCACACACCTTCAAGTTGGTTAATGCAGATGGAGAGGCAGTCTATTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
||
| CDS TCA 90 bp | GGATGTAAAACGTCCAGGACGGGTAATTGCCATTGGCGATGGCATTaGAAAGATCTCGGAGGCCATAATCCGGATCTTCCTGAGCAAGCC | + |
|
Preference number: 5 (lower is better) Translates to: GCKTSRTGNCHWRWH*KDLGGHNPDLPEQA Trigger: GGCTTGCTCAGGAAGATCCGGATTATGGCCTCCGAGATCTTTTCAATGCCATCGCCAATGGCAATTACCCGTCCTGGACGTTTTACATCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
||
| CDS TCA 90 bp | GATCTTCCTGAGCAAGCCTTCCTGCCTCTCCAACAGGCAAGTTTTTaGTGCCCTGGTCGGTCTTGTAATGGAACTTGCAATAGACTGCCT | + |
|
Preference number: 5 (lower is better) Translates to: DLPEQAFLPLQQASF*CPGRSCNGTCNRLP Trigger: AGGCAGTCTATTGCAAGTTCCATTACAAGACCGACCAGGGCATCAAAAACTTGCCTGTTGGAGAGGCAGGAAGGCTTGCTCAGGAAGATC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
||
| CDS GCA 90 bp | GTGACTGTGGAGAATCGAACGGCAATAGGGGTCCTCTTTCCAATATaGTCAAACACCTTTGCCTTGGAGTATCTGGTGATATCGTGGGTG | + |
|
Preference number: 5 (lower is better) Translates to: VTVENRTAIGVLFPI*SNTFALEYLVISWV Trigger: CACCCACGATATCACCAGATACTCCAAGGCAAAGGTGTTTGAGCATATTGGAAAGAGGACCCCTATTGCCGTTCGATTCTCCACAGTCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
||
| CDS CCA 90 bp | TCCTCCTCGTTCAACACCTTTGCCTTGGAGTATCTGGTGATATCGTaGGTGACCTCAAAGTATCCAAAAGCACCTGCTCCTTTTGCGTGT | + |
|
Preference number: 5 (lower is better) Translates to: SSSFNTFALEYLVIS*VTSKYPKAPAPFAC Trigger: ACACGCAAAAGGAGCAGGTGCTTTTGGATACTTTGAGGTCACCCACGATATCACCAGATACTCCAAGGCAAAGGTGTTGAACGAGGAGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111168.4 |
||
| CDS GCA 90 bp | TCGAACGGCAATAGGGGTCCTCTTTCCAATATGCTCAAACACCTTTaGCTTGGAGTATCTGGTGATATCGTGGGTGACCTCAAAGTATCC | + |
|
Preference number: 5 (lower is better) Translates to: SNGNRGPLSNMLKHL*LGVSGDIVGDLKVS Trigger: GGATACTTTGAGGTCACCCACGATATCACCAGATACTCCAAGGCAAAGGTGTTTGAGCATATTGGAAAGAGGACCCCTATTGCCGTTCGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
||
| CDS CCA 90 bp | ACTCCAGAAGTCCCAGACCATGTCAGGATCCTTCAGGTGAGTCTGTaGGTTTCTCTTCTGGCTATGGATAAAGGATGGAAACAATATGGC | + |
|
Preference number: 5 (lower is better) Translates to: TPEVPDHVRILQVSL*VSLLAMDKGWKQYG Trigger: GCCATATTGTTTCCATCCTTTATCCATAGCCAGAAGAGAAACCCACAGACTCACCTGAAGGATCCTGACATGGTCTGGGACTTCTGGAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
||
| CDS-3UTR CAA 90 bp | ACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGAGAGATTGTTTAAAACCAGTTaGCCAACTGGTATAAGAGGG | + |
|
Preference number: 5 (lower is better) Translates to: TDTMEALAAGAFIVTAERLFKTS*PTGIRG Trigger: CCCTCTTATACCAGTTGGCAAACTGGTTTTAAACAA...TCTCTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
||
| CDS CCA 90 bp | CCAATATGCTCAAACACCTTTGCCTTGGAGTATCTGGTGATATCGTaGGTGACCTCAAAGTATCCAAAAGCACCTGCTCCTTTTGCGTGT | + |
|
Preference number: 5 (lower is better) Translates to: PICSNTFALEYLVIS*VTSKYPKAPAPFAC Trigger: ACACGCAAAAGGAGCAGGTGCTTTTGGATACTTTGAGGTCACCCACGATATCACCAGATACTCCAAGGCAAAGGTGTTTGAGCATATTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
||
| CDS GCA 90 bp | AGGCCAAACCTTGGTCAGATCAAATGGATTAAATGGGAAAGTTTCTaGCTCCTTAAAAGTCATGACCTGGATGTAAAACGTCCAGGACGG | + |
|
Preference number: 5 (lower is better) Translates to: RPNLGQIKWIKWESF*LLKSHDLDVKRPGR Trigger: CCGTCCTGGACGTTTTACATCCAGGTCATGACTTTTAAGGAGGCAGAAACTTTCCCATTTAATCCATTTGATCTGACCAAGGTTTGGCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
||
| CDS CCA 90 bp | CTTCAGGTGAGTCTGTGGGTTTCTCTTCTGGCTATGGATAAAGGATaGAAACAATATGGCATCCCTGATGAAGAAAATAGGGGTGTTGTT | + |
|
Preference number: 5 (lower is better) Translates to: LQVSLWVSLLAMDKG*KQYGIPDEENRGVV Trigger: AACAACACCCCTATTTTCTTCATCAGGGATGCCATATTGTTTCCATCCTTTATCCATAGCCAGAAGAGAAACCCACAGACTCACCTGAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
||
| CDS GCA 72 bp | CCGGTGGTCAGGACATCAGGTCTCTGCGAGGCCCGCTaGTCCTTCCACTGCTTCATCTGGTCGCTGGCTGGG | + |
|
Preference number: 6 (lower is better) Translates to: PVVRTSGLCEAR*SFHCFIWSLAG Trigger: CCCAGCCAGCGACCAGATGAAGCAGTGGAAGGAGCAGCGGGCCTCGCAGAGACCTGATGTCCTGACCACCGG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028610.10 ENSMUST00000111168.4 |
||
| CDS GCA 72 bp | ACATCAGGTCTCTGCGAGGCCCGCTGCTCCTTCCACTaGTTCATCTGGTCGCTGGCTGGGTCCCGACTGTCC | + |
|
Preference number: 6 (lower is better) Translates to: TSGLCEARCSFH*FIWSLAGSRLS Trigger: GGACAGTCGGGACCCAGCCAGCGACCAGATGAAGCAGTGGAAGGAGCAGCGGGCCTCGCAGAGACCTGATGT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028610.10 ENSMUST00000111168.4 |
||
| CDS TCA 72 bp | TGTGCTCCAGGGCTGAGCGCTGCTGCTCTGGTGCGCTaGAGCTGTTGGGGTAATAGTTGGGGGCACCACCCT | + |
|
Preference number: 6 (lower is better) Translates to: CAPGLSAAALVR*SCWGNSWGHHP Trigger: AGGGTGGTGCCCCCAACTATTACCCCAACAGCTTCAGCGCACCAGAGCAGCAGCGCTCAGCCCTGGAGCACA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
||
| CDS CCA 72 bp | CGCGGTAGGGACAGTTCACAGGTATCTGCAGATAGTTaGGTCCCAGGCGGTGGCGGTGAGTGTCCGGGTAGG | + |
|
Preference number: 6 (lower is better) Translates to: RGRDSSQVSADS*VPGGGGECPGR Trigger: CCTACCCGGACACTCACCGCCACCGCCTGGGACCCAACTATCTGCAGATACCTGTGAACTGTCCCTACCGCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
||
| CDS CCA 72 bp | AGTTGGGGGCACCACCCTGGTTGTCATGCATGCACATaGGGCCATCACGCTGGTAGTTGGCCACTCGAGCGC | + |
|
Preference number: 6 (lower is better) Translates to: SWGHHPGCHACT*GHHAGSWPLER Trigger: GCGCTCGAGTGGCCAACTACCAGCGTGATGGCCCCATGTGCATGCATGACAACCAGGGTGGTGCCCCCAACT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
||
| CDS GCA 72 bp | GGTAATAGTTGGGGGCACCACCCTGGTTGTCATGCATaGACATGGGGCCATCACGCTGGTAGTTGGCCACTC | + |
|
Preference number: 6 (lower is better) Translates to: GNSWGHHPGCHA*TWGHHAGSWPL Trigger: GAGTGGCCAACTACCAGCGTGATGGCCCCATGTGCATGCATGACAACCAGGGTGGTGCCCCCAACTATTACC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
||
| CDS CCA 72 bp | TGTCATGCATGCACATGGGGCCATCACGCTGGTAGTTaGCCACTCGAGCGCGGTAGGGACAGTTCACAGGTA | + |
|
Preference number: 6 (lower is better) Translates to: CHACTWGHHAGS*PLERGRDSSQV Trigger: TACCTGTGAACTGTCCCTACCGCGCTCGAGTGGCCAACTACCAGCGTGATGGCCCCATGTGCATGCATGACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
||
| CDS CCA 72 bp | TTAGCACTGTTGAAGCGTTTCACATCTACAGCGCACTaGACGCTGTGCTCCAGGGCTGAGCGCTGCTGCTCT | + |
|
Preference number: 6 (lower is better) Translates to: LALLKRFTSTAH*TLCSRAERCCS Trigger: AGAGCAGCAGCGCTCAGCCCTGGAGCACAGCGTCCAGTGCGCTGTAGATGTGAAACGCTTCAACAGTGCTAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
||
| CDS TCA 72 bp | TCATGTGCCGGTGACCATCGGGAATCCCTCGGTCACTaGACAAGAAAGAAACCTGATGGAGAGACTCGGGAC | + |
|
Preference number: 6 (lower is better) Translates to: SCAGDHRESLGH*TRKKPDGETRD Trigger: GTCCCGAGTCTCTCCATCAGGTTTCTTTCTTGTTCAGTGACCGAGGGATTCCCGATGGTCACCGGCACATGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
||
| CDS GCA 72 bp | AGCCATGTGAGAGCCGGCCTGCGTGTAGGTGTGAATTaGGTTCTTAGGCTTCTCAGCGTTGTACTTGTCCAG | + |
|
Preference number: 6 (lower is better) Translates to: SHVRAGLRVGVN*VLRLLSVVLVQ Trigger: CTGGACAAGTACAACGCTGAGAAGCCTAAGAACGCAATTCACACCTACACGCAGGCCGGCTCTCACATGGCT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028610.10 ENSMUST00000111168.4 |
||
| CDS CCA 72 bp | GGACCCCGCGGTCATGATATTAAGTTTATCTCCTATTaGGTTCCCGCCTCCGGTGGTCAGGACATCAGGTCT | + |
|
Preference number: 6 (lower is better) Translates to: GPRGHDIKFISY*VPASGGQDIRS Trigger: AGACCTGATGTCCTGACCACCGGAGGCGGGAACCCAATAGGAGATAAACTTAATATCATGACCGCGGGGTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028610.10 ENSMUST00000111168.4 |
||
| CDS GCA 72 bp | ACACAGGCGTTTCCTCTCCTCCTCGTTCAACACCTTTaGCTTGGAGTATCTGGTGATATCGTGGGTGACCTC | + |
|
Preference number: 6 (lower is better) Translates to: TQAFPLLLVQHL*LGVSGDIVGDL Trigger: GAGGTCACCCACGATATCACCAGATACTCCAAGGCAAAGGTGTTGAACGAGGAGGAGAGGAAACGCCTGTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111168.4 |
||
| CDS CCA 72 bp | GTCAGGGCTGGGCTCGATGCCAGGGGGCATATTGCTTaGGTCAAAAGCCATCTGTTCAACTTCAGCAAAGTA | + |
|
Preference number: 6 (lower is better) Translates to: VRAGLDARGHIA*VKSHLFNFSKV Trigger: TACTTTGCTGAAGTTGAACAGATGGCTTTTGACCCAAGCAATATGCCCCCTGGCATCGAGCCCAGCCCTGAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
||
| CDS CAA 72 bp | TGTCAGGGCTGGGCTCGATGCCAGGGGGCATATTGCTaGGGTCAAAAGCCATCTGTTCAACTTCAGCAAAGT | + |
|
Preference number: 6 (lower is better) Translates to: CQGWARCQGAYC*GQKPSVQLQQS Trigger: ACTTTGCTGAAGTTGAACAGATGGCTTTTGACCCAAGCAATATGCCCCCTGGCATCGAGCCCAGCCCTGACA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
||
| CDS TCA 72 bp | TGCCTCTCCATCTGCATTAACCAACTTGAAGGTGTGTaGTCCATAGCCATTCATGTGCCGGTGACCATCGGG | + |
|
Preference number: 6 (lower is better) Translates to: CLSICINQLEGV*SIAIHVPVTIG Trigger: CCCGATGGTCACCGGCACATGAATGGCTATGGATCACACACCTTCAAGTTGGTTAATGCAGATGGAGAGGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
||
| CDS GCA 72 bp | GGTGACCTCAAAGTATCCAAAAGCACCTGCTCCTTTTaGGTGTACCACTCTCTCAGGAATCCGCTCTCTGTC | + |
|
Preference number: 6 (lower is better) Translates to: GDLKVSKSTCSF*VYHSLRNPLSV Trigger: GACAGAGAGCGGATTCCTGAGAGAGTGGTACACGCAAAAGGAGCAGGTGCTTTTGGATACTTTGAGGTCACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028610.10 ENSMUST00000111168.4 |
||
| CDS CAA 72 bp | AGGCGTTTCCTCTCCTCCTCGTTCAACACCTTTGCCTaGGAGTATCTGGTGATATCGTGGGTGACCTCAAAG | + |
|
Preference number: 6 (lower is better) Translates to: RRFLSSSFNTFA*EYLVISWVTSK Trigger: CTTTGAGGTCACCCACGATATCACCAGATACTCCAAGGCAAAGGTGTTGAACGAGGAGGAGAGGAAACGCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111168.4 |
||
| CDS GCA 72 bp | TACCACTCTCTCAGGAATCCGCTCTCTGTCAAAGTGTaGCATCTCGTCAGTGAAAACCACATCCTGAACGAG | + |
|
Preference number: 6 (lower is better) Translates to: YHSLRNPLSVKV*HLVSENHILNE Trigger: CTCGTTCAGGATGTGGTTTTCACTGACGAGATGGCACACTTTGACAGAGAGCGGATTCCTGAGAGAGTGGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028610.10 ENSMUST00000111168.4 |
||
| CDS GCA 72 bp | GCCCTGGTCGGTCTTGTAATGGAACTTGCAATAGACTaGCTCTCCATCTGCATTAACCAACTTGAAGGTGTG | + |
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Preference number: 6 (lower is better) Translates to: ALVGLVMELAID*LSICINQLEGV Trigger: CACACCTTCAAGTTGGTTAATGCAGATGGAGAGGCAGTCTATTGCAAGTTCCATTACAAGACCGACCAGGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS CCA 72 bp | GTCCCAGACCATGTCAGGATCCTTCAGGTGAGTCTGTaGGTTTCTCTTCTGGCTATGGATAAAGGATGGAAA | + |
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Preference number: 6 (lower is better) Translates to: VPDHVRILQVSL*VSLLAMDKGWK Trigger: TTTCCATCCTTTATCCATAGCCAGAAGAGAAACCCACAGACTCACCTGAAGGATCCTGACATGGTCTGGGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS CAA 72 bp | GGGGTCCTCTTTCCAATATGCTCAAACACCTTTGCCTaGGAGTATCTGGTGATATCGTGGGTGACCTCAAAG | + |
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Preference number: 6 (lower is better) Translates to: GVLFPICSNTFA*EYLVISWVTSK Trigger: CTTTGAGGTCACCCACGATATCACCAGATACTCCAAGGCAAAGGTGTTTGAGCATATTGGAAAGAGGACCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS GCA 72 bp | AATAGGGGTCCTCTTTCCAATATGCTCAAACACCTTTaGCTTGGAGTATCTGGTGATATCGTGGGTGACCTC | + |
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Preference number: 6 (lower is better) Translates to: NRGPLSNMLKHL*LGVSGDIVGDL Trigger: GAGGTCACCCACGATATCACCAGATACTCCAAGGCAAAGGTGTTTGAGCATATTGGAAAGAGGACCCCTATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS CCA 72 bp | TCAAACACCTTTGCCTTGGAGTATCTGGTGATATCGTaGGTGACCTCAAAGTATCCAAAAGCACCTGCTCCT | + |
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Preference number: 6 (lower is better) Translates to: SNTFALEYLVIS*VTSKYPKAPAP Trigger: AGGAGCAGGTGCTTTTGGATACTTTGAGGTCACCCACGATATCACCAGATACTCCAAGGCAAAGGTGTTTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS CCA 72 bp | TTCAACACCTTTGCCTTGGAGTATCTGGTGATATCGTaGGTGACCTCAAAGTATCCAAAAGCACCTGCTCCT | + |
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Preference number: 6 (lower is better) Translates to: FNTFALEYLVIS*VTSKYPKAPAP Trigger: AGGAGCAGGTGCTTTTGGATACTTTGAGGTCACCCACGATATCACCAGATACTCCAAGGCAAAGGTGTTGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111168.4 |
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| CDS CAA 90 bp | ACGGCAATAGGGGTCCTCTTTCCAATATGCTCAAACACCTTTGCCTaGGAGTATCTGGTGATATCGTGGGTGACCTCAAAGTATCCAAAA | + |
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Preference number: 6 (lower is better) Translates to: TAIGVLFPICSNTFA*EYLVISWVTSKYPK Trigger: TTTTGGATACTTTGAGGTCACCCACGATATCACCAGATACTCCAAGGCAAAGGTGTTTGAGCATATTGGAAAGAGGACCCCTATTGCCGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS GCA 72 bp | GAGAATCGAACGGCAATAGGGGTCCTCTTTCCAATATaGTCAAACACCTTTGCCTTGGAGTATCTGGTGATA | + |
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Preference number: 6 (lower is better) Translates to: ENRTAIGVLFPI*SNTFALEYLVI Trigger: TATCACCAGATACTCCAAGGCAAAGGTGTTTGAGCATATTGGAAAGAGGACCCCTATTGCCGTTCGATTCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS CCA 72 bp | AGTCTGTGGGTTTCTCTTCTGGCTATGGATAAAGGATaGAAACAATATGGCATCCCTGATGAAGAAAATAGG | + |
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Preference number: 6 (lower is better) Translates to: SLWVSLLAMDKG*KQYGIPDEENR Trigger: CCTATTTTCTTCATCAGGGATGCCATATTGTTTCCATCCTTTATCCATAGCCAGAAGAGAAACCCACAGACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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| CDS GCA 72 bp | CTTGGTCAGATCAAATGGATTAAATGGGAAAGTTTCTaGCTCCTTAAAAGTCATGACCTGGATGTAAAACGT | + |
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Preference number: 6 (lower is better) Translates to: LGQIKWIKWESF*LLKSHDLDVKR Trigger: ACGTTTTACATCCAGGTCATGACTTTTAAGGAGGCAGAAACTTTCCCATTTAATCCATTTGATCTGACCAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028610.10 |
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