RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CAT (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027187

Ensembl transcript IDs: ENSMUST00000028610.10, ENSMUST00000111168.4

Found 103 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TGTGTGTGTGTGGTATGTGTGTTGTATTGTATATATACCAGACCATaGGGTAATAGGAGAATACACTATTCTCGCCAAGATTTTTATCTT +
Preference number: 1 (lower is better)
Translates to: CVCVVCVLYCIYTRP*GNRRIHYSRQDFYL
Trigger: AAGATAAAAATCTTGGCGAGAATAGTGTATTCTCCTATTACCTCATGGTCTGGTATATATACAATACAACACACATACCACACACACACA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
3UTR-3UTR TCA 90 bp ACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGAGAGACACATTATACAGAGCTaGAAGCAACCAAACACGGTC +
Preference number: 2 (lower is better)
Translates to: TDTMEALAAGAFIVTAERHIIQS*KQPNTV
Trigger: GACCGTGTTTGGTTGCTTTCAGCTCTGTATAATGTG...TCTCTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
3UTR-3UTR GCA 90 bp AAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGAGAAGAATCTGATTAGCTaGACAGCACAGCACAGCACA +
Preference number: 2 (lower is better)
Translates to: KTDTMEALAAGAFIVTAEKNLIS*TAQHST
Trigger: TGTGCTGTGCTGTGCTGTGCAGCTAATCAGATTCTT...CTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
3UTR-3UTR CCA 90 bp AAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGAGATCAAGTCATGTTTCTaGCTAGAACACCTTTCTTGT +
Preference number: 2 (lower is better)
Translates to: KTDTMEALAAGAFIVTAEIKSCF*LEHLSC
Trigger: ACAAGAAAGGTGTTCTAGCCAGAAACATGACTTGAT...CTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
3UTR-3UTR CCA 90 bp CTTCACATTCCACATTATACAGAGCTGAAAGCAACCAAACACGGTCCTTCCATGACGGCATCAAAAGCATaGTTATCATTCACTCTAGAA +
Preference number: 2 (lower is better)
Translates to: LHIPHYTELKATKHGPSMTASKA*LSFTLE
Trigger: TTCTAGAGTGAATGATAACCATGCTTTTGATGCCGT...CATGGAAGGACCGTGTTTGGTTGCTTTCAGCTCTGTATAATGTGGAATGTGAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
3UTR CCA 72 bp TCAGTGCGCCAGCAGGCCATCCAAAGACAGACACCATaGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTG +
Preference number: 3 (lower is better)
Translates to: SVRQQAIQRQTP*RLWPLALLLLL
Trigger: CAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGGATGGCCTGCTGGCGCACTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
3UTR CCA 72 bp CAGCAGGCCATCCAAAGACAGACACCATGGAGGCTCTaGCCGCTGGCGCTTTTATTGTTACTGCAGAGAGAG +
Preference number: 3 (lower is better)
Translates to: QQAIQRQTPWRL*PLALLLLLQRE
Trigger: CTCTCTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGGATGGCCTGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
3UTR-3UTR CAA 90 bp CCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGATGCAAGTATGGTTTaGCTTATAAGGACCTTAGAA +
Preference number: 3 (lower is better)
Translates to: PKTDTMEALAAGAFIVTADASMV*LIRTLE
Trigger: TTCTAAGGTCCTTATAAGCAAAACCATACTTGCATC...TGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
3UTR-3UTR CAA 90 bp ACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGAGAGAGTGCTAAAGTTACTTTaGGAAGACATGATGCAAGTA +
Preference number: 3 (lower is better)
Translates to: TDTMEALAAGAFIVTAERVLKLL*EDMMQV
Trigger: TACTTGCATCATGTCTTCCAAAAGTAACTTTAGCAC...TCTCTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
3UTR TCA 72 bp GGTAATCTCTACTTCACATTCCACATTATACAGAGCTaGAAGCAACCAAACACGGTCCTTCCATGTAGATCA +
Preference number: 3 (lower is better)
Translates to: GNLYFTFHIIQS*KQPNTVLPCRS
Trigger: TGATCTACATGGAAGGACCGTGTTTGGTTGCTTTCAGCTCTGTATAATGTGGAATGTGAAGTAGAGATTACC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
3UTR-3UTR CAA 90 bp CTTCACATTCCACATTATACAGAGCTGAAAGCAACCAAACACGGTCCTTCCATGGGTATGTGTGTTGTATaGTATATATACCAGACCATG +
Preference number: 3 (lower is better)
Translates to: LHIPHYTELKATKHGPSMGMCVV*YIYQTM
Trigger: CATGGTCTGGTATATATACAATACAACACACATACC...CATGGAAGGACCGTGTTTGGTTGCTTTCAGCTCTGTATAATGTGGAATGTGAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
3UTR TCA 72 bp GTGGTATGTGTGTTGTATTGTATATATACCAGACCATaGGGTAATAGGAGAATACACTATTCTCGCCAAGAT +
Preference number: 3 (lower is better)
Translates to: VVCVLYCIYTRP*GNRRIHYSRQD
Trigger: ATCTTGGCGAGAATAGTGTATTCTCCTATTACCTCATGGTCTGGTATATATACAATACAACACACATACCAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS-3UTR TCA 90 bp CAGTGCGCCAGCAGGCCATCCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGGCTGTGCTCCAGGGCTaGGCGCTGCTGCTCTGGTGC +
Preference number: 4 (lower is better)
Translates to: QCASRPSKDRHHGGSGRWAVLQG*ALLLWC
Trigger: GCACCAGAGCAGCAGCGCTCAGCCCTGGAGCACAGC...CCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGGATGGCCTGCTGGCGCACTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS-3UTR GCA 90 bp CAGTGCGCCAGCAGGCCATCCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGCCAGAAGAGCCTGGATaGGGGCCCCATAGTCAGGGT +
Preference number: 4 (lower is better)
Translates to: QCASRPSKDRHHGGSGRWPEEPG*GPHSQG
Trigger: ACCCTGACTATGGGGCCCGCATCCAGGCTCTTCTGG...CCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGGATGGCCTGCTGGCGCACTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS-3UTR CCA 90 bp AGCAGGCCATCCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATGCTTCATCTGGTCGCTaGCTGGGTCCCGACTGTCCG +
Preference number: 4 (lower is better)
Translates to: SRPSKDRHHGGSGRWRFYASSGR*LGPDCP
Trigger: CGGACAGTCGGGACCCAGCCAGCGACCAGATGAAGC...ATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGGATGGCCTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS-3UTR CCA 90 bp AGCAGGCCATCCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATCATCTGGTCGCTGGCTaGGTCCCGACTGTCCGACAT +
Preference number: 4 (lower is better)
Translates to: SRPSKDRHHGGSGRWRFYHLVAG*VPTVRH
Trigger: ATGTCGGACAGTCGGGACCCAGCCAGCGACCAGATG...ATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGGATGGCCTGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS-3UTR CCA 90 bp AGCAGGCCATCCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATGCATTTTGTCAGGGCTaGGCTCGATGCCAGGGGGCA +
Preference number: 4 (lower is better)
Translates to: SRPSKDRHHGGSGRWRFYAFCQG*ARCQGA
Trigger: TGCCCCCTGGCATCGAGCCCAGCCCTGACAAAATGC...ATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGGATGGCCTGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS-3UTR CCA 90 bp CAGTGCGCCAGCAGGCCATCCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGCTTCAGGTGAGTCTGTaGGTTTCTCTTCTGGCTATG +
Preference number: 4 (lower is better)
Translates to: QCASRPSKDRHHGGSGRWLQVSL*VSLLAM
Trigger: CATAGCCAGAAGAGAAACCCACAGACTCACCTGAAG...CCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGGATGGCCTGCTGGCGCACTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS-3UTR TCA 90 bp ACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGAGAGAGTGAAAACCACATCCTaGACGAGGAGGGGCCCTCGG +
Preference number: 4 (lower is better)
Translates to: TDTMEALAAGAFIVTAERVKTTS*TRRGPR
Trigger: CCGAGGGCCCCTCCTCGTTCAGGATGTGGTTTTCAC...TCTCTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS-3UTR TCA 90 bp ACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGAGAGACCATTCATGTGCCGGTaGCCATCGGGAATCCCTCGG +
Preference number: 4 (lower is better)
Translates to: TDTMEALAAGAFIVTAERPFMCR*PSGIPR
Trigger: CCGAGGGATTCCCGATGGTCACCGGCACATGAATGG...TCTCTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS-3UTR GCA 90 bp ACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGAGAGACTCTGCGAGGCCCGCTaGTCCTTCCACTGCTTCATC +
Preference number: 4 (lower is better)
Translates to: TDTMEALAAGAFIVTAERLCEAR*SFHCFI
Trigger: GATGAAGCAGTGGAAGGAGCAGCGGGCCTCGCAGAG...TCTCTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS-3UTR GCA 90 bp AGCAGGCCATCCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATCCACCCTGGTTGTCATaGATGCACATGGGGCCATCA +
Preference number: 4 (lower is better)
Translates to: SRPSKDRHHGGSGRWRFYPPWLS*MHMGPS
Trigger: TGATGGCCCCATGTGCATGCATGACAACCAGGGTGG...ATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGGATGGCCTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS-3UTR CCA 90 bp ACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGAGAGACATCACGCTGGTAGTTaGCCACTCGAGCGCGGTAGG +
Preference number: 4 (lower is better)
Translates to: TDTMEALAAGAFIVTAERHHAGS*PLERGR
Trigger: CCTACCGCGCTCGAGTGGCCAACTACCAGCGTGATG...TCTCTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS-3UTR GCA 90 bp AGCAGGCCATCCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATCTGAGCAAGCCTTCCTaGCTCTCCAACAGGCAAGTT +
Preference number: 4 (lower is better)
Translates to: SRPSKDRHHGGSGRWRFYLSKPS*LSNRQV
Trigger: AACTTGCCTGTTGGAGAGGCAGGAAGGCTTGCTCAG...ATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGGATGGCCTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS-3UTR CCA 90 bp AGCAGGCCATCCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTCATGCATGCACATaGGGCCATCACGCTGGTAGT +
Preference number: 4 (lower is better)
Translates to: SRPSKDRHHGGSGRWRFYCHACT*GHHAGS
Trigger: ACTACCAGCGTGATGGCCCCATGTGCATGCATGACA...ATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGGATGGCCTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS-3UTR TCA 90 bp CCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAAGCCTGACTCTCCAGTaGCTGTGGAGAATCGAACGG +
Preference number: 4 (lower is better)
Translates to: PKTDTMEALAAGAFIVTASLTLQ*LWRIER
Trigger: CCGTTCGATTCTCCACAGTCACTGGAGAGTCAGGCT...TGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS-3UTR TCA 90 bp AGCAGGCCATCCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTCAGGATCCTTCAGGTaGGTCTGTGGGTTTCTCTTC +
Preference number: 4 (lower is better)
Translates to: SRPSKDRHHGGSGRWRFYSGSFR*VCGFLF
Trigger: GAAGAGAAACCCACAGACTCACCTGAAGGATCCTGA...ATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGGATGGCCTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS-3UTR CCA 90 bp ACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGAGAGATTGGGGGCACCACCCTaGTTGTCATGCATGCACATG +
Preference number: 4 (lower is better)
Translates to: TDTMEALAAGAFIVTAERLGAPP*LSCMHM
Trigger: CATGTGCATGCATGACAACCAGGGTGGTGCCCCCAA...TCTCTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS-3UTR TCA 90 bp CCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGTGCCATCTCGTCAGTaGAAACCACATCCTGAACGA +
Preference number: 4 (lower is better)
Translates to: PKTDTMEALAAGAFIVTAVPSRQ*KPHPER
Trigger: TCGTTCAGGATGTGGTTTTCACTGACGAGATGGCAC...TGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS-3UTR GCA 90 bp CCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCATGCCAGGGGGCATATTaGTTGGGTCAAAAGCCATCT +
Preference number: 4 (lower is better)
Translates to: PKTDTMEALAAGAFIVTACQGAY*LGQKPS
Trigger: AGATGGCTTTTGACCCAAGCAATATGCCCCCTGGCA...TGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS-3UTR CCA 90 bp AGCAGGCCATCCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTGGGTTTCTCTTCTaGCTATGGATAAAGGATGGA +
Preference number: 4 (lower is better)
Translates to: SRPSKDRHHGGSGRWRFYCGFLF*LWIKDG
Trigger: TCCATCCTTTATCCATAGCCAGAAGAGAAACCCACA...ATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGGATGGCCTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
3UTR CAA 72 bp CAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATaGTTACTGCAGAGAGAGCTGGTAATCTCTACTTCA +
Preference number: 4 (lower is better)
Translates to: QTPWRLWPLALL*LLQRELVISTS
Trigger: TGAAGTAGAGATTACCAGCTCTCTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS-3UTR TCA 90 bp CCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCACAACTTGAAGGTGTGTaGTCCATAGCCATTCATGTG +
Preference number: 4 (lower is better)
Translates to: PKTDTMEALAAGAFIVTAQLEGV*SIAIHV
Trigger: CACATGAATGGCTATGGATCACACACCTTCAAGTTG...TGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS-3UTR GCA 90 bp CTTCACATTCCACATTATACAGAGCTGAAAGCAACCAAACACGGTCCTTCCATGCGCTGCTCCTTCCACTaGTTCATCTGGTCGCTGGCT +
Preference number: 4 (lower is better)
Translates to: LHIPHYTELKATKHGPSMRCSFH*FIWSLA
Trigger: AGCCAGCGACCAGATGAAGCAGTGGAAGGAGCAGCG...CATGGAAGGACCGTGTTTGGTTGCTTTCAGCTCTGTATAATGTGGAATGTGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS-3UTR CCA 90 bp CTTCACATTCCACATTATACAGAGCTGAAAGCAACCAAACACGGTCCTTCCATGGTATCTGCAGATAGTTaGGTCCCAGGCGGTGGCGGT +
Preference number: 4 (lower is better)
Translates to: LHIPHYTELKATKHGPSMVSADS*VPGGGG
Trigger: ACCGCCACCGCCTGGGACCCAACTATCTGCAGATAC...CATGGAAGGACCGTGTTTGGTTGCTTTCAGCTCTGTATAATGTGGAATGTGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS-3UTR CCA 90 bp ACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGAGAGAAACCAGTTTGCCAACTaGTATAAGAGGGTAGTCCTT +
Preference number: 4 (lower is better)
Translates to: TDTMEALAAGAFIVTAERNQFAN*YKRVVL
Trigger: AAGGACTACCCTCTTATACCAGTTGGCAAACTGGTT...TCTCTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS-3UTR GCA 90 bp CCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCATCTTGTAATGGAACTTaGAATAGACTGCCTCTCCAT +
Preference number: 4 (lower is better)
Translates to: PKTDTMEALAAGAFIVTASCNGT*NRLPLH
Trigger: ATGGAGAGGCAGTCTATTGCAAGTTCCATTACAAGA...TGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS-3UTR CCA 90 bp ACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGAGAGAGCTATGGATAAAGGATaGAAACAATATGGCATCCCT +
Preference number: 4 (lower is better)
Translates to: TDTMEALAAGAFIVTAERAMDKG*KQYGIP
Trigger: AGGGATGCCATATTGTTTCCATCCTTTATCCATAGC...TCTCTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS-3UTR GCA 90 bp CTTCACATTCCACATTATACAGAGCTGAAAGCAACCAAACACGGTCCTTCCATGAGTGTAAAATTTCACTaGAAACCCCCGAGGGTCACG +
Preference number: 4 (lower is better)
Translates to: LHIPHYTELKATKHGPSMSVKFH*KPPRVT
Trigger: CGTGACCCTCGGGGGTTTGCAGTGAAATTTTACACT...CATGGAAGGACCGTGTTTGGTTGCTTTCAGCTCTGTATAATGTGGAATGTGAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS-3UTR CCA 90 bp AAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGAGTTTCTCTTCTGGCTATaGATAAAGGATGGAAACAAT +
Preference number: 4 (lower is better)
Translates to: KTDTMEALAAGAFIVTAEFLFWL*IKDGNN
Trigger: ATTGTTTCCATCCTTTATCCATAGCCAGAAGAGAAA...CTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS-3UTR CCA 90 bp CCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAATCAAATGGATTAAATaGGAAAGTTTCTGCCTCCTT +
Preference number: 4 (lower is better)
Translates to: PKTDTMEALAAGAFIVTAIKWIK*ESFCLL
Trigger: AAGGAGGCAGAAACTTTCCCATTTAATCCATTTGAT...TGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS-3UTR CCA 90 bp AAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGAGCTTGGTCAGATCAAATaGATTAAATGGGAAAGTTTC +
Preference number: 4 (lower is better)
Translates to: KTDTMEALAAGAFIVTAELGQIK*IKWESF
Trigger: GAAACTTTCCCATTTAATCCATTTGATCTGACCAAG...CTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS-3UTR TCA 90 bp CTTCACATTCCACATTATACAGAGCTGAAAGCAACCAAACACGGTCCTTCCATGGAATCCCTCGGTCACTaGACAAGAAAGAAACCTGAT +
Preference number: 4 (lower is better)
Translates to: LHIPHYTELKATKHGPSMESLGH*TRKKPD
Trigger: ATCAGGTTTCTTTCTTGTTCAGTGACCGAGGGATTC...CATGGAAGGACCGTGTTTGGTTGCTTTCAGCTCTGTATAATGTGGAATGTGAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS-3UTR GCA 90 bp CTTCACATTCCACATTATACAGAGCTGAAAGCAACCAAACACGGTCCTTCCATGAAATGGGAAAGTTTCTaGCTCCTTAAAAGTCATGAC +
Preference number: 4 (lower is better)
Translates to: LHIPHYTELKATKHGPSMKWESF*LLKSHD
Trigger: GTCATGACTTTTAAGGAGGCAGAAACTTTCCCATTT...CATGGAAGGACCGTGTTTGGTTGCTTTCAGCTCTGTATAATGTGGAATGTGAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
3UTR CAA 72 bp ATAGGAGAATACACTATTCTCGCCAAGATTTTTATCTaGTCTAATCAAGTCATGTTTCTGGCTAGAACACCT +
Preference number: 4 (lower is better)
Translates to: IGEYTILAKIFI*SNQVMFLARTP
Trigger: AGGTGTTCTAGCCAGAAACATGACTTGATTAGACAAGATAAAAATCTTGGCGAGAATAGTGTATTCTCCTAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS GCA 90 bp TTCCCGCCTCCGGTGGTCAGGACATCAGGTCTCTGCGAGGCCCGCTaGTCCTTCCACTGCTTCATCTGGTCGCTGGCTGGGTCCCGACTG +
Preference number: 5 (lower is better)
Translates to: FPPPVVRTSGLCEAR*SFHCFIWSLAGSRL
Trigger: CAGTCGGGACCCAGCCAGCGACCAGATGAAGCAGTGGAAGGAGCAGCGGGCCTCGCAGAGACCTGATGTCCTGACCACCGGAGGCGGGAA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028610.10
ENSMUST00000111168.4
CDS TCA 90 bp ACTGGACGCTGTGCTCCAGGGCTGAGCGCTGCTGCTCTGGTGCGCTaGAGCTGTTGGGGTAATAGTTGGGGGCACCACCCTGGTTGTCAT +
Preference number: 5 (lower is better)
Translates to: TGRCAPGLSAAALVR*SCWGNSWGHHPGCH
Trigger: ATGACAACCAGGGTGGTGCCCCCAACTATTACCCCAACAGCTTCAGCGCACCAGAGCAGCAGCGCTCAGCCCTGGAGCACAGCGTCCAGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS CCA 90 bp CCACTCGAGCGCGGTAGGGACAGTTCACAGGTATCTGCAGATAGTTaGGTCCCAGGCGGTGGCGGTGAGTGTCCGGGTAGGCAAAAAGGC +
Preference number: 5 (lower is better)
Translates to: PLERGRDSSQVSADS*VPGGGGECPGRQKG
Trigger: GCCTTTTTGCCTACCCGGACACTCACCGCCACCGCCTGGGACCCAACTATCTGCAGATACCTGTGAACTGTCCCTACCGCGCTCGAGTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS CCA 90 bp TGGGGTAATAGTTGGGGGCACCACCCTGGTTGTCATGCATGCACATaGGGCCATCACGCTGGTAGTTGGCCACTCGAGCGCGGTAGGGAC +
Preference number: 5 (lower is better)
Translates to: WGNSWGHHPGCHACT*GHHAGSWPLERGRD
Trigger: GTCCCTACCGCGCTCGAGTGGCCAACTACCAGCGTGATGGCCCCATGTGCATGCATGACAACCAGGGTGGTGCCCCCAACTATTACCCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS CCA 90 bp GGGCCCTCGGGACCCCGCGGTCATGATATTAAGTTTATCTCCTATTaGGTTCCCGCCTCCGGTGGTCAGGACATCAGGTCTCTGCGAGGC +
Preference number: 5 (lower is better)
Translates to: GPSGPRGHDIKFISY*VPASGGQDIRSLRG
Trigger: GCCTCGCAGAGACCTGATGTCCTGACCACCGGAGGCGGGAACCCAATAGGAGATAAACTTAATATCATGACCGCGGGGTCCCGAGGGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028610.10
ENSMUST00000111168.4
CDS-3UTR CAA 90 bp CAGTGCGCCAGCAGGCCATCCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGTTCTCAGCGTTGTACTaGTCCAGAAGAGCCTGGATG +
Preference number: 5 (lower is better)
Translates to: QCASRPSKDRHHGGSGRWFSALY*SRRAWM
Trigger: CATCCAGGCTCTTCTGGACAAGTACAACGCTGAGAA...CCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGGATGGCCTGCTGGCGCACTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS TCA 90 bp GAAGCGTTTCACATCTACAGCGCACTGGACGCTGTGCTCCAGGGCTaGGCGCTGCTGCTCTGGTGCGCTGAAGCTGTTGGGGTAATAGTT +
Preference number: 5 (lower is better)
Translates to: EAFHIYSALDAVLQG*ALLLWCAEAVGVIV
Trigger: AACTATTACCCCAACAGCTTCAGCGCACCAGAGCAGCAGCGCTCAGCCCTGGAGCACAGCGTCCAGTGCGCTGTAGATGTGAAACGCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS GCA 90 bp TTAGCACTGTTGAAGCGTTTCACATCTACAGCGCACTGGACGCTGTaGTCCAGGGCTGAGCGCTGCTGCTCTGGTGCGCTGAAGCTGTTG +
Preference number: 5 (lower is better)
Translates to: LALLKRFTSTAHWTL*SRAERCCSGALKLL
Trigger: CAACAGCTTCAGCGCACCAGAGCAGCAGCGCTCAGCCCTGGAGCACAGCGTCCAGTGCGCTGTAGATGTGAAACGCTTCAACAGTGCTAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS CCA 90 bp CACCCTGGTTGTCATGCATGCACATGGGGCCATCACGCTGGTAGTTaGCCACTCGAGCGCGGTAGGGACAGTTCACAGGTATCTGCAGAT +
Preference number: 5 (lower is better)
Translates to: HPGCHACTWGHHAGS*PLERGRDSSQVSAD
Trigger: ATCTGCAGATACCTGTGAACTGTCCCTACCGCGCTCGAGTGGCCAACTACCAGCGTGATGGCCCCATGTGCATGCATGACAACCAGGGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS-3UTR CAA 90 bp AAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGAGGGGGCACCACCCTGGTaGTCATGCATGCACATGGGG +
Preference number: 5 (lower is better)
Translates to: KTDTMEALAAGAFIVTAEGAPPW*SCMHMG
Trigger: CCCCATGTGCATGCATGACAACCAGGGTGGTGCCCC...CTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS CCA 90 bp TTGTCTTCATTAGCACTGTTGAAGCGTTTCACATCTACAGCGCACTaGACGCTGTGCTCCAGGGCTGAGCGCTGCTGCTCTGGTGCGCTG +
Preference number: 5 (lower is better)
Translates to: LSSLALLKRFTSTAH*TLCSRAERCCSGAL
Trigger: CAGCGCACCAGAGCAGCAGCGCTCAGCCCTGGAGCACAGCGTCCAGTGCGCTGTAGATGTGAAACGCTTCAACAGTGCTAATGAAGACAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS GCA 90 bp TCCCTTCGCAGCCATGTGAGAGCCGGCCTGCGTGTAGGTGTGAATTaGGTTCTTAGGCTTCTCAGCGTTGTACTTGTCCAGAAGAGCCTG +
Preference number: 5 (lower is better)
Translates to: SLRSHVRAGLRVGVN*VLRLLSVVLVQKSL
Trigger: CAGGCTCTTCTGGACAAGTACAACGCTGAGAAGCCTAAGAACGCAATTCACACCTACACGCAGGCCGGCTCTCACATGGCTGCGAAGGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028610.10
ENSMUST00000111168.4
CDS TCA 90 bp CATAGCCATTCATGTGCCGGTGACCATCGGGAATCCCTCGGTCACTaGACAAGAAAGAAACCTGATGGAGAGACTCGGGACGAAGACTCC +
Preference number: 5 (lower is better)
Translates to: HSHSCAGDHRESLGH*TRKKPDGETRDEDS
Trigger: GGAGTCTTCGTCCCGAGTCTCTCCATCAGGTTTCTTTCTTGTTCAGTGACCGAGGGATTCCCGATGGTCACCGGCACATGAATGGCTATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS-3UTR CAA 90 bp ACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGAGAGAAAGCACCTGCTCCTTTaGCGTGTACCACTCTCTCAG +
Preference number: 5 (lower is better)
Translates to: TDTMEALAAGAFIVTAERKHLLL*RVPLSQ
Trigger: CTGAGAGAGTGGTACACGCAAAAGGAGCAGGTGCTT...TCTCTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS-3UTR CAA 90 bp CCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCACCAACAGGCAAGTTTTaGATGCCCTGGTCGGTCTTG +
Preference number: 5 (lower is better)
Translates to: PKTDTMEALAAGAFIVTAPTGKF*MPWSVL
Trigger: CAAGACCGACCAGGGCATCAAAAACTTGCCTGTTGG...TGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS-3UTR CAA 90 bp ACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGAGAGAATGCCAGGGGGCATATaGCTTGGGTCAAAAGCCATC +
Preference number: 5 (lower is better)
Translates to: TDTMEALAAGAFIVTAERMPGGI*LGSKAI
Trigger: GATGGCTTTTGACCCAAGCAATATGCCCCCTGGCAT...TCTCTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS GCA 90 bp AAGATCTCGGAGGCCATAATCCGGATCTTCCTGAGCAAGCCTTCCTaGCTCTCCAACAGGCAAGTTTTTGATGCCCTGGTCGGTCTTGTA +
Preference number: 5 (lower is better)
Translates to: KISEAIIRIFLSKPS*LSNRQVFDALVGLV
Trigger: TACAAGACCGACCAGGGCATCAAAAACTTGCCTGTTGGAGAGGCAGGAAGGCTTGCTCAGGAAGATCCGGATTATGGCCTCCGAGATCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS-3UTR CAA 90 bp AGCAGGCCATCCAAAGACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATAAGAAAATAGGGGTGTaGTTTCCCACAAGATCCCAG +
Preference number: 5 (lower is better)
Translates to: SRPSKDRHHGGSGRWRFYKKIGV*FPTRSQ
Trigger: CTGGGATCTTGTGGGAAACAACACCCCTATTTTCTT...ATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGTCTTTGGATGGCCTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS-3UTR CAA 90 bp ACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGAGAGATTAGGCTTCTCAGCGTaGTACTTGTCCAGAAGAGCC +
Preference number: 5 (lower is better)
Translates to: TDTMEALAAGAFIVTAERLGFSA*YLSRRA
Trigger: GGCTCTTCTGGACAAGTACAACGCTGAGAAGCCTAA...TCTCTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS TCA 90 bp GCAATAGACTGCCTCTCCATCTGCATTAACCAACTTGAAGGTGTGTaGTCCATAGCCATTCATGTGCCGGTGACCATCGGGAATCCCTCG +
Preference number: 5 (lower is better)
Translates to: AIDCLSICINQLEGV*SIAIHVPVTIGNPS
Trigger: CGAGGGATTCCCGATGGTCACCGGCACATGAATGGCTATGGATCACACACCTTCAAGTTGGTTAATGCAGATGGAGAGGCAGTCTATTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS TCA 90 bp GGATGTAAAACGTCCAGGACGGGTAATTGCCATTGGCGATGGCATTaGAAAGATCTCGGAGGCCATAATCCGGATCTTCCTGAGCAAGCC +
Preference number: 5 (lower is better)
Translates to: GCKTSRTGNCHWRWH*KDLGGHNPDLPEQA
Trigger: GGCTTGCTCAGGAAGATCCGGATTATGGCCTCCGAGATCTTTTCAATGCCATCGCCAATGGCAATTACCCGTCCTGGACGTTTTACATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS TCA 90 bp GATCTTCCTGAGCAAGCCTTCCTGCCTCTCCAACAGGCAAGTTTTTaGTGCCCTGGTCGGTCTTGTAATGGAACTTGCAATAGACTGCCT +
Preference number: 5 (lower is better)
Translates to: DLPEQAFLPLQQASF*CPGRSCNGTCNRLP
Trigger: AGGCAGTCTATTGCAAGTTCCATTACAAGACCGACCAGGGCATCAAAAACTTGCCTGTTGGAGAGGCAGGAAGGCTTGCTCAGGAAGATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS GCA 90 bp GTGACTGTGGAGAATCGAACGGCAATAGGGGTCCTCTTTCCAATATaGTCAAACACCTTTGCCTTGGAGTATCTGGTGATATCGTGGGTG +
Preference number: 5 (lower is better)
Translates to: VTVENRTAIGVLFPI*SNTFALEYLVISWV
Trigger: CACCCACGATATCACCAGATACTCCAAGGCAAAGGTGTTTGAGCATATTGGAAAGAGGACCCCTATTGCCGTTCGATTCTCCACAGTCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS CCA 90 bp TCCTCCTCGTTCAACACCTTTGCCTTGGAGTATCTGGTGATATCGTaGGTGACCTCAAAGTATCCAAAAGCACCTGCTCCTTTTGCGTGT +
Preference number: 5 (lower is better)
Translates to: SSSFNTFALEYLVIS*VTSKYPKAPAPFAC
Trigger: ACACGCAAAAGGAGCAGGTGCTTTTGGATACTTTGAGGTCACCCACGATATCACCAGATACTCCAAGGCAAAGGTGTTGAACGAGGAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111168.4
CDS GCA 90 bp TCGAACGGCAATAGGGGTCCTCTTTCCAATATGCTCAAACACCTTTaGCTTGGAGTATCTGGTGATATCGTGGGTGACCTCAAAGTATCC +
Preference number: 5 (lower is better)
Translates to: SNGNRGPLSNMLKHL*LGVSGDIVGDLKVS
Trigger: GGATACTTTGAGGTCACCCACGATATCACCAGATACTCCAAGGCAAAGGTGTTTGAGCATATTGGAAAGAGGACCCCTATTGCCGTTCGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS CCA 90 bp ACTCCAGAAGTCCCAGACCATGTCAGGATCCTTCAGGTGAGTCTGTaGGTTTCTCTTCTGGCTATGGATAAAGGATGGAAACAATATGGC +
Preference number: 5 (lower is better)
Translates to: TPEVPDHVRILQVSL*VSLLAMDKGWKQYG
Trigger: GCCATATTGTTTCCATCCTTTATCCATAGCCAGAAGAGAAACCCACAGACTCACCTGAAGGATCCTGACATGGTCTGGGACTTCTGGAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS-3UTR CAA 90 bp ACAGACACCATGGAGGCTCTGGCCGCTGGCGCTTTTATTGTTACTGCAGAGAGATTGTTTAAAACCAGTTaGCCAACTGGTATAAGAGGG +
Preference number: 5 (lower is better)
Translates to: TDTMEALAAGAFIVTAERLFKTS*PTGIRG
Trigger: CCCTCTTATACCAGTTGGCAAACTGGTTTTAAACAA...TCTCTCTGCAGTAACAATAAAAGCGCCAGCGGCCAGAGCCTCCATGGTGTCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS CCA 90 bp CCAATATGCTCAAACACCTTTGCCTTGGAGTATCTGGTGATATCGTaGGTGACCTCAAAGTATCCAAAAGCACCTGCTCCTTTTGCGTGT +
Preference number: 5 (lower is better)
Translates to: PICSNTFALEYLVIS*VTSKYPKAPAPFAC
Trigger: ACACGCAAAAGGAGCAGGTGCTTTTGGATACTTTGAGGTCACCCACGATATCACCAGATACTCCAAGGCAAAGGTGTTTGAGCATATTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS GCA 90 bp AGGCCAAACCTTGGTCAGATCAAATGGATTAAATGGGAAAGTTTCTaGCTCCTTAAAAGTCATGACCTGGATGTAAAACGTCCAGGACGG +
Preference number: 5 (lower is better)
Translates to: RPNLGQIKWIKWESF*LLKSHDLDVKRPGR
Trigger: CCGTCCTGGACGTTTTACATCCAGGTCATGACTTTTAAGGAGGCAGAAACTTTCCCATTTAATCCATTTGATCTGACCAAGGTTTGGCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS CCA 90 bp CTTCAGGTGAGTCTGTGGGTTTCTCTTCTGGCTATGGATAAAGGATaGAAACAATATGGCATCCCTGATGAAGAAAATAGGGGTGTTGTT +
Preference number: 5 (lower is better)
Translates to: LQVSLWVSLLAMDKG*KQYGIPDEENRGVV
Trigger: AACAACACCCCTATTTTCTTCATCAGGGATGCCATATTGTTTCCATCCTTTATCCATAGCCAGAAGAGAAACCCACAGACTCACCTGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS GCA 72 bp CCGGTGGTCAGGACATCAGGTCTCTGCGAGGCCCGCTaGTCCTTCCACTGCTTCATCTGGTCGCTGGCTGGG +
Preference number: 6 (lower is better)
Translates to: PVVRTSGLCEAR*SFHCFIWSLAG
Trigger: CCCAGCCAGCGACCAGATGAAGCAGTGGAAGGAGCAGCGGGCCTCGCAGAGACCTGATGTCCTGACCACCGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028610.10
ENSMUST00000111168.4
CDS GCA 72 bp ACATCAGGTCTCTGCGAGGCCCGCTGCTCCTTCCACTaGTTCATCTGGTCGCTGGCTGGGTCCCGACTGTCC +
Preference number: 6 (lower is better)
Translates to: TSGLCEARCSFH*FIWSLAGSRLS
Trigger: GGACAGTCGGGACCCAGCCAGCGACCAGATGAAGCAGTGGAAGGAGCAGCGGGCCTCGCAGAGACCTGATGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028610.10
ENSMUST00000111168.4
CDS TCA 72 bp TGTGCTCCAGGGCTGAGCGCTGCTGCTCTGGTGCGCTaGAGCTGTTGGGGTAATAGTTGGGGGCACCACCCT +
Preference number: 6 (lower is better)
Translates to: CAPGLSAAALVR*SCWGNSWGHHP
Trigger: AGGGTGGTGCCCCCAACTATTACCCCAACAGCTTCAGCGCACCAGAGCAGCAGCGCTCAGCCCTGGAGCACA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS CCA 72 bp CGCGGTAGGGACAGTTCACAGGTATCTGCAGATAGTTaGGTCCCAGGCGGTGGCGGTGAGTGTCCGGGTAGG +
Preference number: 6 (lower is better)
Translates to: RGRDSSQVSADS*VPGGGGECPGR
Trigger: CCTACCCGGACACTCACCGCCACCGCCTGGGACCCAACTATCTGCAGATACCTGTGAACTGTCCCTACCGCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS CCA 72 bp AGTTGGGGGCACCACCCTGGTTGTCATGCATGCACATaGGGCCATCACGCTGGTAGTTGGCCACTCGAGCGC +
Preference number: 6 (lower is better)
Translates to: SWGHHPGCHACT*GHHAGSWPLER
Trigger: GCGCTCGAGTGGCCAACTACCAGCGTGATGGCCCCATGTGCATGCATGACAACCAGGGTGGTGCCCCCAACT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS GCA 72 bp GGTAATAGTTGGGGGCACCACCCTGGTTGTCATGCATaGACATGGGGCCATCACGCTGGTAGTTGGCCACTC +
Preference number: 6 (lower is better)
Translates to: GNSWGHHPGCHA*TWGHHAGSWPL
Trigger: GAGTGGCCAACTACCAGCGTGATGGCCCCATGTGCATGCATGACAACCAGGGTGGTGCCCCCAACTATTACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS CCA 72 bp TGTCATGCATGCACATGGGGCCATCACGCTGGTAGTTaGCCACTCGAGCGCGGTAGGGACAGTTCACAGGTA +
Preference number: 6 (lower is better)
Translates to: CHACTWGHHAGS*PLERGRDSSQV
Trigger: TACCTGTGAACTGTCCCTACCGCGCTCGAGTGGCCAACTACCAGCGTGATGGCCCCATGTGCATGCATGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS CCA 72 bp TTAGCACTGTTGAAGCGTTTCACATCTACAGCGCACTaGACGCTGTGCTCCAGGGCTGAGCGCTGCTGCTCT +
Preference number: 6 (lower is better)
Translates to: LALLKRFTSTAH*TLCSRAERCCS
Trigger: AGAGCAGCAGCGCTCAGCCCTGGAGCACAGCGTCCAGTGCGCTGTAGATGTGAAACGCTTCAACAGTGCTAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS TCA 72 bp TCATGTGCCGGTGACCATCGGGAATCCCTCGGTCACTaGACAAGAAAGAAACCTGATGGAGAGACTCGGGAC +
Preference number: 6 (lower is better)
Translates to: SCAGDHRESLGH*TRKKPDGETRD
Trigger: GTCCCGAGTCTCTCCATCAGGTTTCTTTCTTGTTCAGTGACCGAGGGATTCCCGATGGTCACCGGCACATGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS GCA 72 bp AGCCATGTGAGAGCCGGCCTGCGTGTAGGTGTGAATTaGGTTCTTAGGCTTCTCAGCGTTGTACTTGTCCAG +
Preference number: 6 (lower is better)
Translates to: SHVRAGLRVGVN*VLRLLSVVLVQ
Trigger: CTGGACAAGTACAACGCTGAGAAGCCTAAGAACGCAATTCACACCTACACGCAGGCCGGCTCTCACATGGCT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028610.10
ENSMUST00000111168.4
CDS CCA 72 bp GGACCCCGCGGTCATGATATTAAGTTTATCTCCTATTaGGTTCCCGCCTCCGGTGGTCAGGACATCAGGTCT +
Preference number: 6 (lower is better)
Translates to: GPRGHDIKFISY*VPASGGQDIRS
Trigger: AGACCTGATGTCCTGACCACCGGAGGCGGGAACCCAATAGGAGATAAACTTAATATCATGACCGCGGGGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028610.10
ENSMUST00000111168.4
CDS GCA 72 bp ACACAGGCGTTTCCTCTCCTCCTCGTTCAACACCTTTaGCTTGGAGTATCTGGTGATATCGTGGGTGACCTC +
Preference number: 6 (lower is better)
Translates to: TQAFPLLLVQHL*LGVSGDIVGDL
Trigger: GAGGTCACCCACGATATCACCAGATACTCCAAGGCAAAGGTGTTGAACGAGGAGGAGAGGAAACGCCTGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111168.4
CDS CCA 72 bp GTCAGGGCTGGGCTCGATGCCAGGGGGCATATTGCTTaGGTCAAAAGCCATCTGTTCAACTTCAGCAAAGTA +
Preference number: 6 (lower is better)
Translates to: VRAGLDARGHIA*VKSHLFNFSKV
Trigger: TACTTTGCTGAAGTTGAACAGATGGCTTTTGACCCAAGCAATATGCCCCCTGGCATCGAGCCCAGCCCTGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS CAA 72 bp TGTCAGGGCTGGGCTCGATGCCAGGGGGCATATTGCTaGGGTCAAAAGCCATCTGTTCAACTTCAGCAAAGT +
Preference number: 6 (lower is better)
Translates to: CQGWARCQGAYC*GQKPSVQLQQS
Trigger: ACTTTGCTGAAGTTGAACAGATGGCTTTTGACCCAAGCAATATGCCCCCTGGCATCGAGCCCAGCCCTGACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS TCA 72 bp TGCCTCTCCATCTGCATTAACCAACTTGAAGGTGTGTaGTCCATAGCCATTCATGTGCCGGTGACCATCGGG +
Preference number: 6 (lower is better)
Translates to: CLSICINQLEGV*SIAIHVPVTIG
Trigger: CCCGATGGTCACCGGCACATGAATGGCTATGGATCACACACCTTCAAGTTGGTTAATGCAGATGGAGAGGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS GCA 72 bp GGTGACCTCAAAGTATCCAAAAGCACCTGCTCCTTTTaGGTGTACCACTCTCTCAGGAATCCGCTCTCTGTC +
Preference number: 6 (lower is better)
Translates to: GDLKVSKSTCSF*VYHSLRNPLSV
Trigger: GACAGAGAGCGGATTCCTGAGAGAGTGGTACACGCAAAAGGAGCAGGTGCTTTTGGATACTTTGAGGTCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028610.10
ENSMUST00000111168.4
CDS CAA 72 bp AGGCGTTTCCTCTCCTCCTCGTTCAACACCTTTGCCTaGGAGTATCTGGTGATATCGTGGGTGACCTCAAAG +
Preference number: 6 (lower is better)
Translates to: RRFLSSSFNTFA*EYLVISWVTSK
Trigger: CTTTGAGGTCACCCACGATATCACCAGATACTCCAAGGCAAAGGTGTTGAACGAGGAGGAGAGGAAACGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111168.4
CDS GCA 72 bp TACCACTCTCTCAGGAATCCGCTCTCTGTCAAAGTGTaGCATCTCGTCAGTGAAAACCACATCCTGAACGAG +
Preference number: 6 (lower is better)
Translates to: YHSLRNPLSVKV*HLVSENHILNE
Trigger: CTCGTTCAGGATGTGGTTTTCACTGACGAGATGGCACACTTTGACAGAGAGCGGATTCCTGAGAGAGTGGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028610.10
ENSMUST00000111168.4
CDS GCA 72 bp GCCCTGGTCGGTCTTGTAATGGAACTTGCAATAGACTaGCTCTCCATCTGCATTAACCAACTTGAAGGTGTG +
Preference number: 6 (lower is better)
Translates to: ALVGLVMELAID*LSICINQLEGV
Trigger: CACACCTTCAAGTTGGTTAATGCAGATGGAGAGGCAGTCTATTGCAAGTTCCATTACAAGACCGACCAGGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS CCA 72 bp GTCCCAGACCATGTCAGGATCCTTCAGGTGAGTCTGTaGGTTTCTCTTCTGGCTATGGATAAAGGATGGAAA +
Preference number: 6 (lower is better)
Translates to: VPDHVRILQVSL*VSLLAMDKGWK
Trigger: TTTCCATCCTTTATCCATAGCCAGAAGAGAAACCCACAGACTCACCTGAAGGATCCTGACATGGTCTGGGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS CAA 72 bp GGGGTCCTCTTTCCAATATGCTCAAACACCTTTGCCTaGGAGTATCTGGTGATATCGTGGGTGACCTCAAAG +
Preference number: 6 (lower is better)
Translates to: GVLFPICSNTFA*EYLVISWVTSK
Trigger: CTTTGAGGTCACCCACGATATCACCAGATACTCCAAGGCAAAGGTGTTTGAGCATATTGGAAAGAGGACCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS GCA 72 bp AATAGGGGTCCTCTTTCCAATATGCTCAAACACCTTTaGCTTGGAGTATCTGGTGATATCGTGGGTGACCTC +
Preference number: 6 (lower is better)
Translates to: NRGPLSNMLKHL*LGVSGDIVGDL
Trigger: GAGGTCACCCACGATATCACCAGATACTCCAAGGCAAAGGTGTTTGAGCATATTGGAAAGAGGACCCCTATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS CCA 72 bp TCAAACACCTTTGCCTTGGAGTATCTGGTGATATCGTaGGTGACCTCAAAGTATCCAAAAGCACCTGCTCCT +
Preference number: 6 (lower is better)
Translates to: SNTFALEYLVIS*VTSKYPKAPAP
Trigger: AGGAGCAGGTGCTTTTGGATACTTTGAGGTCACCCACGATATCACCAGATACTCCAAGGCAAAGGTGTTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS CCA 72 bp TTCAACACCTTTGCCTTGGAGTATCTGGTGATATCGTaGGTGACCTCAAAGTATCCAAAAGCACCTGCTCCT +
Preference number: 6 (lower is better)
Translates to: FNTFALEYLVIS*VTSKYPKAPAP
Trigger: AGGAGCAGGTGCTTTTGGATACTTTGAGGTCACCCACGATATCACCAGATACTCCAAGGCAAAGGTGTTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111168.4
CDS CAA 90 bp ACGGCAATAGGGGTCCTCTTTCCAATATGCTCAAACACCTTTGCCTaGGAGTATCTGGTGATATCGTGGGTGACCTCAAAGTATCCAAAA +
Preference number: 6 (lower is better)
Translates to: TAIGVLFPICSNTFA*EYLVISWVTSKYPK
Trigger: TTTTGGATACTTTGAGGTCACCCACGATATCACCAGATACTCCAAGGCAAAGGTGTTTGAGCATATTGGAAAGAGGACCCCTATTGCCGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS GCA 72 bp GAGAATCGAACGGCAATAGGGGTCCTCTTTCCAATATaGTCAAACACCTTTGCCTTGGAGTATCTGGTGATA +
Preference number: 6 (lower is better)
Translates to: ENRTAIGVLFPI*SNTFALEYLVI
Trigger: TATCACCAGATACTCCAAGGCAAAGGTGTTTGAGCATATTGGAAAGAGGACCCCTATTGCCGTTCGATTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS CCA 72 bp AGTCTGTGGGTTTCTCTTCTGGCTATGGATAAAGGATaGAAACAATATGGCATCCCTGATGAAGAAAATAGG +
Preference number: 6 (lower is better)
Translates to: SLWVSLLAMDKG*KQYGIPDEENR
Trigger: CCTATTTTCTTCATCAGGGATGCCATATTGTTTCCATCCTTTATCCATAGCCAGAAGAGAAACCCACAGACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10
CDS GCA 72 bp CTTGGTCAGATCAAATGGATTAAATGGGAAAGTTTCTaGCTCCTTAAAAGTCATGACCTGGATGTAAAACGT +
Preference number: 6 (lower is better)
Translates to: LGQIKWIKWESF*LLKSHDLDVKR
Trigger: ACGTTTTACATCCAGGTCATGACTTTTAAGGAGGCAGAAACTTTCCCATTTAATCCATTTGATCTGACCAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028610.10