Pregenerated sensors for CASTOR1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020424Ensembl transcript IDs: ENSMUST00000020699.4
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCTTCCTTCGGAGTCCCGCGAAGGGAGTGCACTGCTGAACTCATCTaGCTAGGAAAGCAGTGCAGGCTGGAGGTCAGAGCCCGGCCCGGG | + |
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Preference number: 1 (lower is better) Translates to: SSFGVPRRECTAELI*LGKQCRLEVRARPG Trigger: CCCGGGCCGGGCTCTGACCTCCAGCCTGCACTGCTTTCCTAGCCAGATGAGTTCAGCAGTGCACTCCCTTCGCGGGACTCCGAAGGAAGA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| 3UTR TCA 90 bp | AGACAGCAGAACCAGGCATGGCCACGAGTCCCAGCTCCATACAGCTaGCAGACAGACAGCAGAACCAGGATCCCTTGGCAGGACCAGGGA | + |
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Preference number: 1 (lower is better) Translates to: RQQNQAWPRVPAPYS*QTDSRTRIPWQDQG Trigger: TCCCTGGTCCTGCCAAGGGATCCTGGTTCTGCTGTCTGTCTGTCAGCTGTATGGAGCTGGGACTCGTGGCCATGCCTGGTTCTGCTGTCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| 3UTR-3UTR TCA 90 bp | TGCAGGCTGGAGGTCAGAGCCCGGCCCGGGGATGTGAGCCTTAGCCAGGGGAGAACCAGGGACTTGTTCTaGAGCTCAGAAAAGTTTCTG | + |
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Preference number: 2 (lower is better) Translates to: CRLEVRARPGDVSLSQGRTRDLF*SSEKFL Trigger: CAGAAACTTTTCTGAGCTTCAGAACAAGTCCCTGGT...TCTCCCCTGGCTAAGGCTCACATCCCCGGGCCGGGCTCTGACCTCCAGCCTGCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| 3UTR-3UTR TCA 90 bp | AAAATAAAAGTGAGATTTAATTCTTCCTTCGGAGTCCCGCGAAGGGAGTGCACTCCAGCTCCATACAGCTaGCAGACAGACAGCAGAACC | + |
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Preference number: 2 (lower is better) Translates to: KIKVRFNSSFGVPRRECTPAPYS*QTDSRT Trigger: GGTTCTGCTGTCTGTCTGTCAGCTGTATGGAGCTGG...AGTGCACTCCCTTCGCGGGACTCCGAAGGAAGAATTAAATCTCACTTTTATTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| 3UTR CCA 72 bp | GGAGTCCCGCGAAGGGAGTGCACTGCTGAACTCATCTaGCTAGGAAAGCAGTGCAGGCTGGAGGTCAGAGCC | + |
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Preference number: 3 (lower is better) Translates to: GVPRRECTAELI*LGKQCRLEVRA Trigger: GGCTCTGACCTCCAGCCTGCACTGCTTTCCTAGCCAGATGAGTTCAGCAGTGCACTCCCTTCGCGGGACTCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| 3UTR-3UTR CAA 90 bp | CCAAGGTATCTTTTGTGGGCAGGCATGGCCACGAGTCCCAGCTCCATACAGCTGCAGAACCAGGATCCCTaGGCAGGACCAGGGACTTGT | + |
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Preference number: 3 (lower is better) Translates to: PRYLLWAGMATSPSSIQLQNQDP*AGPGTC Trigger: ACAAGTCCCTGGTCCTGCCAAGGGATCCTGGTTCTG...CAGCTGTATGGAGCTGGGACTCGTGGCCATGCCTGCCCACAAAAGATACCTTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| 3UTR TCA 72 bp | AACCAGGCATGGCCACGAGTCCCAGCTCCATACAGCTaGCAGACAGACAGCAGAACCAGGATCCCTTGGCAG | + |
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Preference number: 3 (lower is better) Translates to: NQAWPRVPAPYS*QTDSRTRIPWQ Trigger: CTGCCAAGGGATCCTGGTTCTGCTGTCTGTCTGTCAGCTGTATGGAGCTGGGACTCGTGGCCATGCCTGGTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS-3UTR CCA 90 bp | TGCAGGCTGGAGGTCAGAGCCCGGCCCGGGGATGTGAGCCTTAGCCAGGGGAGATCAGCAGGAGGTCACTaGGGAACTTTCTCTGGATCT | + |
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Preference number: 4 (lower is better) Translates to: CRLEVRARPGDVSLSQGRSAGGH*GTFSGS Trigger: AGATCCAGAGAAAGTTCCCCAGTGACCTCCTGCTGA...TCTCCCCTGGCTAAGGCTCACATCCCCGGGCCGGGCTCTGACCTCCAGCCTGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS-3UTR GCA 90 bp | CCCAGCTCCATACAGCTGACAGACAGACAGCAGAACCAGGATCCCTTGGCAGGAGTGGCCTCAGCCACTTaGAGGAACTCGGATGGGGGT | + |
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Preference number: 4 (lower is better) Translates to: PSSIQLTDRQQNQDPLAGVASAT*RNSDGG Trigger: ACCCCCATCCGAGTTCCTGCAAGTGGCTGAGGCCAC...TCCTGCCAAGGGATCCTGGTTCTGCTGTCTGTCTGTCAGCTGTATGGAGCTGGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS-3UTR CCA 90 bp | CACGAGTCCCAGCTCCATACAGCTGACAGACAGACAGCAGAACCAGGATCCCTTGAATGGGATGCACCGTaGGACTGGGCCCGTGCTGGA | + |
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Preference number: 4 (lower is better) Translates to: HESQLHTADRQTAEPGSLEWDAP*DWARAG Trigger: TCCAGCACGGGCCCAGTCCCACGGTGCATCCCATTC...AAGGGATCCTGGTTCTGCTGTCTGTCTGTCAGCTGTATGGAGCTGGGACTCGTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS-3UTR CCA 90 bp | CCAAGGTATCTTTTGTGGGCAGGCATGGCCACGAGTCCCAGCTCCATACAGCTGGGGTCCTTGGAAGCCTaGCTTTCCTGCCTTCGCTGG | + |
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Preference number: 4 (lower is better) Translates to: PRYLLWAGMATSPSSIQLGSLEA*LSCLRW Trigger: CCAGCGAAGGCAGGAAAGCCAGGCTTCCAAGGACCC...CAGCTGTATGGAGCTGGGACTCGTGGCCATGCCTGCCCACAAAAGATACCTTGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS-3UTR CCA 90 bp | CCCAGCTCCATACAGCTGACAGACAGACAGCAGAACCAGGATCCCTTGGCAGGATCTGAGGGCTCTGAATaGGATGCACCGTGGGACTGG | + |
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Preference number: 4 (lower is better) Translates to: PSSIQLTDRQQNQDPLAGSEGSE*DAPWDW Trigger: CCAGTCCCACGGTGCATCCCATTCAGAGCCCTCAGA...TCCTGCCAAGGGATCCTGGTTCTGCTGTCTGTCTGTCAGCTGTATGGAGCTGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS-3UTR TCA 90 bp | CAGCTGACAGACAGACAGCAGAACCAGGCATGGCCACGAGTCCCAGCTCCATACTCTCAGGGTCCAGTGTaGGGACACAAAAGCGGTTCT | + |
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Preference number: 4 (lower is better) Translates to: QLTDRQQNQAWPRVPAPYSQGPV*GHKSGS Trigger: AGAACCGCTTTTGTGTCCTCACACTGGACCCTGAGA...GTATGGAGCTGGGACTCGTGGCCATGCCTGGTTCTGCTGTCTGTCTGTCAGCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS-3UTR CCA 90 bp | CACGAGTCCCAGCTCCATACAGCTGACAGACAGACAGCAGAACCAGGATCCCTTTCCTGGGCCAGTGTGTaGATCACCACAGACAGGTCC | + |
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Preference number: 4 (lower is better) Translates to: HESQLHTADRQTAEPGSLSWASV*ITTDRS Trigger: GGACCTGTCTGTGGTGATCCACACACTGGCCCAGGA...AAGGGATCCTGGTTCTGCTGTCTGTCTGTCAGCTGTATGGAGCTGGGACTCGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS-3UTR CCA 90 bp | ATACAGCTGACAGACAGACAGCAGAACCAGGATCCCTTGGCAGGACCAGGGACTGCTCCCCAGAAGAACTaGTCAGCAGGAGGTCACTGG | + |
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Preference number: 4 (lower is better) Translates to: IQLTDRQQNQDPLAGPGTAPQKN*SAGGHW Trigger: CCAGTGACCTCCTGCTGACCAGTTCTTCTGGGGAGC...AGTCCCTGGTCCTGCCAAGGGATCCTGGTTCTGCTGTCTGTCTGTCAGCTGTAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS-3UTR TCA 90 bp | CTGCAGGCAAGCAGGCTCTGTGCATTGCTGAGGTCACATAGAAAATGTTGGGTCAGAAGAGGACATCGATaGGGGTGGTGGCGACAGCCG | + |
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Preference number: 4 (lower is better) Translates to: LQASRLCALLRSHRKCWVRRGHR*GWWRQP Trigger: CGGCTGTCGCCACCACCCTCATCGATGTCCTCTTCT...GACCCAACATTTTCTATGTGACCTCAGCAATGCACAGAGCCTGCTTGCCTGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS-3UTR CCA 90 bp | AAGCACCAAGGTATCTTTTGTGGGCAGGCATGGCCACGAGTCCCAGCTCCATACCAGACCGGGCAATCTTaGTTACTCCAGCAGCCTGCA | + |
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Preference number: 4 (lower is better) Translates to: KHQGIFCGQAWPRVPAPYQTGQS*LLQQPA Trigger: TGCAGGCTGCTGGAGTAACCAAGATTGCCCGGTCTG...GTATGGAGCTGGGACTCGTGGCCATGCCTGCCCACAAAAGATACCTTGGTGCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS-3UTR CCA 90 bp | CCCAGCTCCATACAGCTGACAGACAGACAGCAGAACCAGGATCCCTTGGCAGGAATCAGAACAGACACATaGTGTTCAGCCAGCGGGGCA | + |
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Preference number: 4 (lower is better) Translates to: PSSIQLTDRQQNQDPLAGIRTDT*CSASGA Trigger: TGCCCCGCTGGCTGAACACCATGTGTCTGTTCTGAT...TCCTGCCAAGGGATCCTGGTTCTGCTGTCTGTCTGTCAGCTGTATGGAGCTGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS-3UTR CCA 90 bp | CAGCAGAACCAGGATCCCTTGGCAGGACCAGGGACTTGTTCTGAAGCTCAGAAAGGCCCGTGCTGGATCTaGGGAAAGCCATTGCTGGAA | + |
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Preference number: 4 (lower is better) Translates to: QQNQDPLAGPGTCSEAQKGPCWI*GKPLLE Trigger: TTCCAGCAATGGCTTTCCCCAGATCCAGCACGGGCC...TTTCTGAGCTTCAGAACAAGTCCCTGGTCCTGCCAAGGGATCCTGGTTCTGCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS-3UTR CCA 90 bp | CAGAACCAGGATCCCTTGGCAGGACCAGGGACTTGTTCTGAAGCTCAGAAAAGTCCGAGGCCGCTTCCTTaGGGACACTGTGGGAGTAGA | + |
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Preference number: 4 (lower is better) Translates to: QNQDPLAGPGTCSEAQKSPRPLP*GHCGSR Trigger: TCTACTCCCACAGTGTCCCCAAGGAAGCGGCCTCGG...ACTTTTCTGAGCTTCAGAACAAGTCCCTGGTCCTGCCAAGGGATCCTGGTTCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS-3UTR TCA 90 bp | AAGCACCAAGGTATCTTTTGTGGGCAGGCATGGCCACGAGTCCCAGCTCCATACGGATCTCTGCATCCATaGCAATGGAGATGTACCCCT | + |
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Preference number: 4 (lower is better) Translates to: KHQGIFCGQAWPRVPAPYGSLHP*QWRCTP Trigger: AGGGGTACATCTCCATTGTCATGGATGCAGAGATCC...GTATGGAGCTGGGACTCGTGGCCATGCCTGCCCACAAAAGATACCTTGGTGCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS-3UTR GCA 90 bp | AGCAGAACCAGGATCCCTTGGCAGGACCAGGGACTTGTTCTGAAGCTCAGAAAAAGAACTTGCACCGACTaGGACAGGGCAGGAAGAGCA | + |
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Preference number: 4 (lower is better) Translates to: SRTRIPWQDQGLVLKLRKRTCTD*DRAGRA Trigger: TGCTCTTCCTGCCCTGTCGCAGTCGGTGCAAGTTCT...TTTTCTGAGCTTCAGAACAAGTCCCTGGTCCTGCCAAGGGATCCTGGTTCTGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS-3UTR CCA 90 bp | CTGCAGGCAAGCAGGCTCTGTGCATTGCTGAGGTCACATAGAAAATGTTGGGTCTCATCACCAGCCATGTaGCCTCAGCCACTTGCAGGA | + |
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Preference number: 4 (lower is better) Translates to: LQASRLCALLRSHRKCWVSSPAM*PQPLAG Trigger: TCCTGCAAGTGGCTGAGGCCACATGGCTGGTGATGA...GACCCAACATTTTCTATGTGACCTCAGCAATGCACAGAGCCTGCTTGCCTGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS-3UTR CCA 90 bp | AAAATAAAAGTGAGATTTAATTCTTCCTTCGGAGTCCCGCGAAGGGAGTGCACTGATGCACCGTGGGACTaGGCCCGTGCTGGATCTGGG | + |
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Preference number: 4 (lower is better) Translates to: KIKVRFNSSFGVPRRECTDAPWD*ARAGSG Trigger: CCCAGATCCAGCACGGGCCCAGTCCCACGGTGCATC...AGTGCACTCCCTTCGCGGGACTCCGAAGGAAGAATTAAATCTCACTTTTATTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS-3UTR GCA 90 bp | CCCAGCTCCATACAGCTGACAGACAGACAGCAGAACCAGGATCCCTTGGCAGGACTTTCTCTGGATCTCTaGATCCATGACAATGGAGAT | + |
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Preference number: 4 (lower is better) Translates to: PSSIQLTDRQQNQDPLAGLSLDL*IHDNGD Trigger: ATCTCCATTGTCATGGATGCAGAGATCCAGAGAAAG...TCCTGCCAAGGGATCCTGGTTCTGCTGTCTGTCTGTCAGCTGTATGGAGCTGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS-3UTR CCA 90 bp | CCCAGCTCCATACAGCTGACAGACAGACAGCAGAACCAGGATCCCTTGGCAGGAAGTCTGTCTGGTATGTaGACAACATCAGAACAGACA | + |
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Preference number: 4 (lower is better) Translates to: PSSIQLTDRQQNQDPLAGSLSGM*TTSEQT Trigger: TGTCTGTTCTGATGTTGTCCACATACCAGACAGACT...TCCTGCCAAGGGATCCTGGTTCTGCTGTCTGTCTGTCAGCTGTATGGAGCTGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| 3UTR CAA 72 bp | ATACAGCTGACAGACAGACAGCAGAACCAGGATCCCTaGGCAGGACCAGGGACTTGTTCTGAAGCTCAGAAA | + |
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Preference number: 4 (lower is better) Translates to: IQLTDRQQNQDP*AGPGTCSEAQK Trigger: TTTCTGAGCTTCAGAACAAGTCCCTGGTCCTGCCAAGGGATCCTGGTTCTGCTGTCTGTCTGTCAGCTGTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS-3UTR CCA 90 bp | AAAATAAAAGTGAGATTTAATTCTTCCTTCGGAGTCCCGCGAAGGGAGTGCACTCTGGGGAACTTTCTCTaGATCTCTGCATCCATGACA | + |
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Preference number: 4 (lower is better) Translates to: KIKVRFNSSFGVPRRECTLGNFL*ISASMT Trigger: TGTCATGGATGCAGAGATCCAGAGAAAGTTCCCCAG...AGTGCACTCCCTTCGCGGGACTCCGAAGGAAGAATTAAATCTCACTTTTATTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS-3UTR CAA 90 bp | CCAGGGGAGAGGCGGCTCCAGCTGCAGGCAAGCAGGCTCTGTGCATTGCTGAGGACAGACCGGGCAATCTaGGTTACTCCAGCAGCCTGC | + |
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Preference number: 5 (lower is better) Translates to: PGERRLQLQASRLCALLRTDRAI*VTPAAC Trigger: GCAGGCTGCTGGAGTAACCAAGATTGCCCGGTCTGT...CCTCAGCAATGCACAGAGCCTGCTTGCCTGCAGCTGGAGCCGCCTCTCCCCTGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS TCA 90 bp | CGGGCAATCTTGGTTACTCCAGCAGCCTGCACCACGGAGCCACTGTaGGATACGTTCATCACCAGCCATGTGGCCTCAGCCACTTGCAGG | + |
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Preference number: 5 (lower is better) Translates to: RAILVTPAACTTEPL*DTFITSHVASATCR Trigger: CCTGCAAGTGGCTGAGGCCACATGGCTGGTGATGAACGTATCTCACAGTGGCTCCGTGGTGCAGGCTGCTGGAGTAACCAAGATTGCCCG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS-3UTR CAA 90 bp | CACGAGTCCCAGCTCCATACAGCTGACAGACAGACAGCAGAACCAGGATCCCTTGTCAGGCTGAAGAACTaGCACCGACTGCGACAGGGC | + |
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Preference number: 5 (lower is better) Translates to: HESQLHTADRQTAEPGSLVRLKN*HRLRQG Trigger: GCCCTGTCGCAGTCGGTGCAAGTTCTTCAGCCTGAC...AAGGGATCCTGGTTCTGCTGTCTGTCTGTCAGCTGTATGGAGCTGGGACTCGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS TCA 90 bp | TGGACAACATCAGAACAGACACATGGTGTTCAGCCAGCGGGGCAATaGCAGACCGGGCAATCTTGGTTACTCCAGCAGCCTGCACCACGG | + |
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Preference number: 5 (lower is better) Translates to: WTTSEQTHGVQPAGQ*QTGQSWLLQQPAPR Trigger: CCGTGGTGCAGGCTGCTGGAGTAACCAAGATTGCCCGGTCTGTCATTGCCCCGCTGGCTGAACACCATGTGTCTGTTCTGATGTTGTCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS-3UTR CAA 90 bp | CTGCAGGCAAGCAGGCTCTGTGCATTGCTGAGGTCACATAGAAAATGTTGGGTCTGTGGCCTCAGCCACTaGCAGGAACTCGGATGGGGG | + |
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Preference number: 5 (lower is better) Translates to: LQASRLCALLRSHRKCWVCGLSH*QELGWG Trigger: CCCCCATCCGAGTTCCTGCAAGTGGCTGAGGCCACA...GACCCAACATTTTCTATGTGACCTCAGCAATGCACAGAGCCTGCTTGCCTGCAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS TCA 90 bp | GGTCCTTGGAAGCCTGGCTTTCCTGCCTTCGCTGGAGAATATCAATaGCACAGCCGATCTCGTCTTCAGGAACCAGCGCATGGTCAAAGT | + |
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Preference number: 5 (lower is better) Translates to: GPWKPGFPAFAGEYQ*HSRSRLQEPAHGQS Trigger: ACTTTGACCATGCGCTGGTTCCTGAAGACGAGATCGGCTGTGTCATTGATATTCTCCAGCGAAGGCAGGAAAGCCAGGCTTCCAAGGACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS-3UTR CAA 90 bp | ATACAGCTGACAGACAGACAGCAGAACCAGGATCCCTTGGCAGGACCAGGGACTATCTGGGGAAAGCCATaGCTGGAATCGTCTCCAGTA | + |
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Preference number: 5 (lower is better) Translates to: IQLTDRQQNQDPLAGPGTIWGKP*LESSPV Trigger: TACTGGAGACGATTCCAGCAATGGCTTTCCCCAGAT...AGTCCCTGGTCCTGCCAAGGGATCCTGGTTCTGCTGTCTGTCTGTCAGCTGTAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS TCA 90 bp | CCAGTGTGTGGATCACCACAGACAGGTCCTGCTCCCGTACCAGGATaGAGTCTGTCTGGTATGTGGACAACATCAGAACAGACACATGGT | + |
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Preference number: 5 (lower is better) Translates to: PVCGSPQTGPAPVPG*SLSGMWTTSEQTHG Trigger: ACCATGTGTCTGTTCTGATGTTGTCCACATACCAGACAGACTTCATCCTGGTACGGGAGCAGGACCTGTCTGTGGTGATCCACACACTGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS CCA 72 bp | GCAGAGATGTCAACAGCCGCCAGGGGACCCGCAATCTaGGCCACAATCCCACATTCATCGAAGCCCAGGGGC | + |
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Preference number: 6 (lower is better) Translates to: AEMSTAARGPAI*ATIPHSSKPRG Trigger: GCCCCTGGGCTTCGATGAATGTGGGATTGTGGCCCAGATTGCGGGTCCCCTGGCGGCTGTTGACATCTCTGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS CAA 72 bp | GTGGGACTGGGCCCGTGCTGGATCTGGGGAAAGCCATaGCTGGAATCGTCTCCAGTAACGGGCACAGGCTCC | + |
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Preference number: 6 (lower is better) Translates to: VGLGPCWIWGKP*LESSPVTGTGS Trigger: GGAGCCTGTGCCCGTTACTGGAGACGATTCCAGCAATGGCTTTCCCCAGATCCAGCACGGGCCCAGTCCCAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS TCA 72 bp | CTCGATGAGGGAGAAAGCGAAGAACGGAATGGACGTTaGTTCAGGACCGCCCGAGGCCGCTTCCTTGGGGAC | + |
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Preference number: 6 (lower is better) Translates to: LDEGESEERNGR*FRTARGRFLGD Trigger: GTCCCCAAGGAAGCGGCCTCGGGCGGTCCTGAATCAACGTCCATTCCGTTCTTCGCTTTCTCCCTCATCGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS CCA 72 bp | ATGGGATGCACCGTGGGACTGGGCCCGTGCTGGATCTaGGGAAAGCCATTGCTGGAATCGTCTCCAGTAACG | + |
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Preference number: 6 (lower is better) Translates to: MGCTVGLGPCWI*GKPLLESSPVT Trigger: CGTTACTGGAGACGATTCCAGCAATGGCTTTCCCCAGATCCAGCACGGGCCCAGTCCCACGGTGCATCCCAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS CCA 72 bp | AAAAGCGGTTCTGAGGGCTCTGAATGGGATGCACCGTaGGACTGGGCCCGTGCTGGATCTGGGGAAAGCCAT | + |
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Preference number: 6 (lower is better) Translates to: KSGSEGSEWDAP*DWARAGSGESH Trigger: ATGGCTTTCCCCAGATCCAGCACGGGCCCAGTCCCACGGTGCATCCCATTCAGAGCCCTCAGAACCGCTTTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS CAA 90 bp | GTCTCCAGTAACGGGCACAGGCTCCCCGCCTACTTCACGGTAGATTaGGAACTCCTGGGCCAGTGTGTGGATCACCACAGACAGGTCCTG | + |
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Preference number: 6 (lower is better) Translates to: VSSNGHRLPAYFTVD*ELLGQCVDHHRQVL Trigger: CAGGACCTGTCTGTGGTGATCCACACACTGGCCCAGGAGTTCCAAATCTACCGTGAAGTAGGCGGGGAGCCTGTGCCCGTTACTGGAGAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS TCA 72 bp | TTGGTTACTCCAGCAGCCTGCACCACGGAGCCACTGTaGGATACGTTCATCACCAGCCATGTGGCCTCAGCC | + |
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Preference number: 6 (lower is better) Translates to: LVTPAACTTEPL*DTFITSHVASA Trigger: GGCTGAGGCCACATGGCTGGTGATGAACGTATCTCACAGTGGCTCCGTGGTGCAGGCTGCTGGAGTAACCAA 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS CCA 72 bp | CGATGCGCACCATCCTCCACAGCTCCCCAGAAGAACTaGTCAGCAGGAGGTCACTGGGGAACTTTCTCTGGA | + |
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Preference number: 6 (lower is better) Translates to: RCAPSSTAPQKN*SAGGHWGTFSG Trigger: TCCAGAGAAAGTTCCCCAGTGACCTCCTGCTGACCAGTTCTTCTGGGGAGCTGTGGAGGATGGTGCGCATCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS CAA 72 bp | AACGGGCACAGGCTCCCCGCCTACTTCACGGTAGATTaGGAACTCCTGGGCCAGTGTGTGGATCACCACAGA | + |
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Preference number: 6 (lower is better) Translates to: NGHRLPAYFTVD*ELLGQCVDHHR Trigger: TCTGTGGTGATCCACACACTGGCCCAGGAGTTCCAAATCTACCGTGAAGTAGGCGGGGAGCCTGTGCCCGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS GCA 72 bp | GATACGTTCATCACCAGCCATGTGGCCTCAGCCACTTaGAGGAACTCGGATGGGGGTAGCTCTTTAAAGCCC | + |
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Preference number: 6 (lower is better) Translates to: DTFITSHVASAT*RNSDGGSSLKP Trigger: GGGCTTTAAAGAGCTACCCCCATCCGAGTTCCTGCAAGTGGCTGAGGCCACATGGCTGGTGATGAACGTATC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS TCA 72 bp | GGATCACCACAGACAGGTCCTGCTCCCGTACCAGGATaGAGTCTGTCTGGTATGTGGACAACATCAGAACAG | + |
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Preference number: 6 (lower is better) Translates to: GSPQTGPAPVPG*SLSGMWTTSEQ Trigger: CTGTTCTGATGTTGTCCACATACCAGACAGACTTCATCCTGGTACGGGAGCAGGACCTGTCTGTGGTGATCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS TCA 72 bp | AAGCCTGGCTTTCCTGCCTTCGCTGGAGAATATCAATaGCACAGCCGATCTCGTCTTCAGGAACCAGCGCAT | + |
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Preference number: 6 (lower is better) Translates to: KPGFPAFAGEYQ*HSRSRLQEPAH Trigger: ATGCGCTGGTTCCTGAAGACGAGATCGGCTGTGTCATTGATATTCTCCAGCGAAGGCAGGAAAGCCAGGCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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| CDS CCA 72 bp | TATGGGTCCTTGGAAGCCTGGCTTTCCTGCCTTCGCTaGAGAATATCAATGACACAGCCGATCTCGTCTTCA | + |
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Preference number: 6 (lower is better) Translates to: YGSLEAWLSCLR*RISMTQPISSS Trigger: TGAAGACGAGATCGGCTGTGTCATTGATATTCTCCAGCGAAGGCAGGAAAGCCAGGCTTCCAAGGACCCATA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020699.4 |
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