RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CASR (Mus musculus)

Ensembl gene IDs: ENSMUSG00000051980

Ensembl transcript IDs: ENSMUST00000063597.14, ENSMUST00000114847.9, ENSMUST00000172826.2

Found 375 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTAAGATCTAAATGTGGCATTGCCTTCAGGTTCTGGATACATCCATaGATGACGTCACAGGAAGGATGCAGATGGAACAGATGTTACACA +
Preference number: 1 (lower is better)
Translates to: LRSKCGIAFRFWIHP*MTSQEGCRWNRCYT
Trigger: TGTGTAACATCTGTTCCATCTGCATCCTTCCTGTGACGTCATGCATGGATGTATCCAGAACCTGAAGGCAATGCCACATTTAGATCTTAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
3UTR GCA 90 bp TTAGTTACAGAGACAGCTCGTTGGGTTGAGTCAGTCCTTTCCCGGTaGTTGGAGGTGATACTTATGATCCTAAGATCTAAATGTGGCATT +
Preference number: 1 (lower is better)
Translates to: LVTETARWVESVLSR*LEVILMILRSKCGI
Trigger: AATGCCACATTTAGATCTTAGGATCATAAGTATCACCTCCAAGCACCGGGAAAGGACTGACTCAACCCAACGAGCTGTCTCTGTAACTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
3UTR CCA 90 bp ATACTTATGATCCTAAGATCTAAATGTGGCATTGCCTTCAGGTTCTaGATACATCCATGCATGACGTCACAGGAAGGATGCAGATGGAAC +
Preference number: 1 (lower is better)
Translates to: ILMILRSKCGIAFRF*IHPCMTSQEGCRWN
Trigger: GTTCCATCTGCATCCTTCCTGTGACGTCATGCATGGATGTATCCAGAACCTGAAGGCAATGCCACATTTAGATCTTAGGATCATAAGTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
3UTR-3UTR CCA 90 bp ACGTCACAGGAAGGATGCAGATGGAACAGATGTTACACAGTAGCAGCAACAGGGTGCACCCACTATCCCTaGCTTCCTGGGAAGACCCAT +
Preference number: 2 (lower is better)
Translates to: TSQEGCRWNRCYTVAATGCTHYP*LPGKTH
Trigger: ATGGGTCTTCCCAGGAAGCCAGGGATAGTGGGTGCA...CCCTGTTGCTGCTACTGTGTAACATCTGTTCCATCTGCATCCTTCCTGTGACGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
3UTR-3UTR CCA 90 bp ACGTCACAGGAAGGATGCAGATGGAACAGATGTTACACAGTAGCAGCAACAGGGCTATCCCTGGCTTCCTaGGAAGACCCATCCTTTTTC +
Preference number: 2 (lower is better)
Translates to: TSQEGCRWNRCYTVAATGLSLAS*EDPSFF
Trigger: GAAAAAGGATGGGTCTTCCCAGGAAGCCAGGGATAG...CCCTGTTGCTGCTACTGTGTAACATCTGTTCCATCTGCATCCTTCCTGTGACGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
3UTR-3UTR GCA 90 bp ACGTCACAGGAAGGATGCAGATGGAACAGATGTTACACAGTAGCAGCAACAGGGTGTCATTCAAAGCAGTaGAGCCGAGTACAGGCTTTG +
Preference number: 2 (lower is better)
Translates to: TSQEGCRWNRCYTVAATGCHSKQ*SRVQAL
Trigger: CAAAGCCTGTACTCGGCTGCACTGCTTTGAATGACA...CCCTGTTGCTGCTACTGTGTAACATCTGTTCCATCTGCATCCTTCCTGTGACGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
3UTR-3UTR CCA 90 bp CTTATAGCCTTGCTTTCATCCGAGCTGGTGGTGGATGGAGCAGAGGAAAAGATTCTATCCCTGGCTTCCTaGGAAGACCCATCCTTTTTC +
Preference number: 2 (lower is better)
Translates to: LIALLSSELVVDGAEEKILSLAS*EDPSFF
Trigger: GAAAAAGGATGGGTCTTCCCAGGAAGCCAGGGATAG...AATCTTTTCCTCTGCTCCATCCACCACCAGCTCGGATGAAAGCAAGGCTATAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
3UTR CAA 90 bp GTTACAGAGACAGCTCGTTGGGTTGAGTCAGTCCTTTCCCGGTGCTaGGAGGTGATACTTATGATCCTAAGATCTAAATGTGGCATTGCC +
Preference number: 2 (lower is better)
Translates to: VTETARWVESVLSRC*EVILMILRSKCGIA
Trigger: GGCAATGCCACATTTAGATCTTAGGATCATAAGTATCACCTCCAAGCACCGGGAAAGGACTGACTCAACCCAACGAGCTGTCTCTGTAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
3UTR-3UTR GCA 90 bp CTTATAGCCTTGCTTTCATCCGAGCTGGTGGTGGATGGAGCAGAGGAAAAGATTTGTCATTCAAAGCAGTaGAGCCGAGTACAGGCTTTG +
Preference number: 2 (lower is better)
Translates to: LIALLSSELVVDGAEEKICHSKQ*SRVQAL
Trigger: CAAAGCCTGTACTCGGCTGCACTGCTTTGAATGACA...AATCTTTTCCTCTGCTCCATCCACCACCAGCTCGGATGAAAGCAAGGCTATAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
3UTR-3UTR CCA 90 bp TGTACAGTTCTGTCCACTGTCAATGTGATAGACAGTCCTGGTGACTATCTGGCTCGAGCTGGTGGTGGATaGAGCAGAGGAAAAGATTTC +
Preference number: 2 (lower is better)
Translates to: CTVLSTVNVIDSPGDYLARAGGG*SRGKDF
Trigger: GAAATCTTTTCCTCTGCTCCATCCACCACCAGCTCG...AGCCAGATAGTCACCAGGACTGTCTATCACATTGACAGTGGACAGAACTGTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
3UTR-3UTR CCA 90 bp GTTCTGTCCACTGTCAATGTGATAGACAGTCCTGGTGACTATCTGGCTTTTAGACATCCGAGCTGGTGGTaGATGGAGCAGAGGAAAAGA +
Preference number: 2 (lower is better)
Translates to: VLSTVNVIDSPGDYLAFRHPSWW*MEQRKR
Trigger: TCTTTTCCTCTGCTCCATCCACCACCAGCTCGGATG...TCTAAAAGCCAGATAGTCACCAGGACTGTCTATCACATTGACAGTGGACAGAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
3UTR-3UTR GCA 90 bp GTTCTGTCCACTGTCAATGTGATAGACAGTCCTGGTGACTATCTGGCTTTTAGATCTGTATCTGGACTGTaGCTCGGGGTAGGGATTTCT +
Preference number: 2 (lower is better)
Translates to: VLSTVNVIDSPGDYLAFRSVSGL*LGVGIS
Trigger: AGAAATCCCTACCCCGAGGCACAGTCCAGATACAGA...TCTAAAAGCCAGATAGTCACCAGGACTGTCTATCACATTGACAGTGGACAGAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
3UTR-3UTR CCA 90 bp CTAAGATCTAAATGTGGCATTGCCTTCAGGTTCTGGATACATCCATGCATGACGTTTCATCCGAGCTGGTaGTGGATGGAGCAGAGGAAA +
Preference number: 2 (lower is better)
Translates to: LRSKCGIAFRFWIHPCMTFHPSW*WMEQRK
Trigger: TTTCCTCTGCTCCATCCACCACCAGCTCGGATGAAA...CGTCATGCATGGATGTATCCAGAACCTGAAGGCAATGCCACATTTAGATCTTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
3UTR-3UTR CCA 90 bp ATCCTAAGATCTAAATGTGGCATTGCCTTCAGGTTCTGGATACATCCATGCATGCGAGCTGGTGGTGGATaGAGCAGAGGAAAAGATTTC +
Preference number: 2 (lower is better)
Translates to: ILRSKCGIAFRFWIHPCMRAGGG*SRGKDF
Trigger: GAAATCTTTTCCTCTGCTCCATCCACCACCAGCTCG...CATGCATGGATGTATCCAGAACCTGAAGGCAATGCCACATTTAGATCTTAGGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
3UTR-3UTR CCA 90 bp TTTATAAATAGGAGAGGACATGTCTGCCTGATGTCTTGCAAATGTACAGTTCTGTGCTTTCATCCGAGCTaGTGGTGGATGGAGCAGAGG +
Preference number: 2 (lower is better)
Translates to: FINRRGHVCLMSCKCTVLCFHPS*WWMEQR
Trigger: CCTCTGCTCCATCCACCACCAGCTCGGATGAAAGCA...CAGAACTGTACATTTGCAAGACATCAGGCAGACATGTCCTCTCCTATTTATAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
3UTR-3UTR CCA 90 bp TATAGCCTTGCTTTCATCCGAGCTGGTGGTGGATGGAGCAGAGGAAAAGATTTCACCCATCCTTTTTCCTaGGACTCTAAGAAAAACTCT +
Preference number: 2 (lower is better)
Translates to: YSLAFIRAGGGWSRGKDFTHPFS*DSKKNS
Trigger: AGAGTTTTTCTTAGAGTCCCAGGAAAAAGGATGGGT...GAAATCTTTTCCTCTGCTCCATCCACCACCAGCTCGGATGAAAGCAAGGCTATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
3UTR-3UTR CCA 90 bp CAGTTTATAATCGCCCATGGACTATTACAACAGAAGCAGTTTCTTAAGGATTACTGCTTTCATCCGAGCTaGTGGTGGATGGAGCAGAGG +
Preference number: 2 (lower is better)
Translates to: QFIIAHGLLQQKQFLKDYCFHPS*WWMEQR
Trigger: CCTCTGCTCCATCCACCACCAGCTCGGATGAAAGCA...GTAATCCTTAAGAAACTGCTTCTGTTGTAATAGTCCATGGGCGATTATAAACTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
3UTR-3UTR CCA 90 bp CTAAGATCTAAATGTGGCATTGCCTTCAGGTTCTGGATACATCCATGCATGACGACCCATCCTTTTTCCTaGGACTCTAAGAAAAACTCT +
Preference number: 2 (lower is better)
Translates to: LRSKCGIAFRFWIHPCMTTHPFS*DSKKNS
Trigger: AGAGTTTTTCTTAGAGTCCCAGGAAAAAGGATGGGT...CGTCATGCATGGATGTATCCAGAACCTGAAGGCAATGCCACATTTAGATCTTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
3UTR-3UTR CCA 90 bp TTTATAAATAGGAGAGGACATGTCTGCCTGATGTCTTGCAAATGTACAGTTCTGTTAGAGGGAAGCAGGTaGGTAGCTTATAGCCTTGCT +
Preference number: 2 (lower is better)
Translates to: FINRRGHVCLMSCKCTVLLEGSR*VAYSLA
Trigger: AGCAAGGCTATAAGCTACCCACCTGCTTCCCTCTAA...CAGAACTGTACATTTGCAAGACATCAGGCAGACATGTCCTCTCCTATTTATAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
3UTR-3UTR CCA 90 bp ATCCTAAGATCTAAATGTGGCATTGCCTTCAGGTTCTGGATACATCCATGCATGCAGGAAGGATGCAGATaGAACAGATGTTACACAGTA +
Preference number: 2 (lower is better)
Translates to: ILRSKCGIAFRFWIHPCMQEGCR*NRCYTV
Trigger: TACTGTGTAACATCTGTTCCATCTGCATCCTTCCTG...CATGCATGGATGTATCCAGAACCTGAAGGCAATGCCACATTTAGATCTTAGGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
3UTR-3UTR TCA 90 bp CAGTTTATAATCGCCCATGGACTATTACAACAGAAGCAGTTTCTTAAGGATTACGAGGACATGTCTGCCTaGTGTCTTGCAAATGTACAG +
Preference number: 2 (lower is better)
Translates to: QFIIAHGLLQQKQFLKDYEDMSA*CLANVQ
Trigger: CTGTACATTTGCAAGACATCAGGCAGACATGTCCTC...GTAATCCTTAAGAAACTGCTTCTGTTGTAATAGTCCATGGGCGATTATAAACTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
3UTR-3UTR GCA 90 bp AGTTTCTTAAGGATTACGCTATGTACATTGATATTAGTTACAGAGACAGCTCGTTCTGTATCTGGACTGTaGCTCGGGGTAGGGATTTCT +
Preference number: 2 (lower is better)
Translates to: SFLRITLCTLILVTETARSVSGL*LGVGIS
Trigger: AGAAATCCCTACCCCGAGGCACAGTCCAGATACAGA...ACGAGCTGTCTCTGTAACTAATATCAATGTACATAGCGTAATCCTTAAGAAACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
3UTR-3UTR CCA 90 bp CAGTTTATAATCGCCCATGGACTATTACAACAGAAGCAGTTTCTTAAGGATTACTTAGAGGGAAGCAGGTaGGTAGCTTATAGCCTTGCT +
Preference number: 2 (lower is better)
Translates to: QFIIAHGLLQQKQFLKDYLEGSR*VAYSLA
Trigger: AGCAAGGCTATAAGCTACCCACCTGCTTCCCTCTAA...GTAATCCTTAAGAAACTGCTTCTGTTGTAATAGTCCATGGGCGATTATAAACTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
3UTR-3UTR TCA 90 bp TTTCTTAAGGATTACGCTATGTACATTGATATTAGTTACAGAGACAGCTCGTTGGAGGACATGTCTGCCTaGTGTCTTGCAAATGTACAG +
Preference number: 2 (lower is better)
Translates to: FLKDYAMYIDISYRDSSLEDMSA*CLANVQ
Trigger: CTGTACATTTGCAAGACATCAGGCAGACATGTCCTC...CAACGAGCTGTCTCTGTAACTAATATCAATGTACATAGCGTAATCCTTAAGAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
3UTR CAA 90 bp GACTATTACAACAGAAGCAGTTTCTTAAGGATTACGCTATGTACATaGATATTAGTTACAGAGACAGCTCGTTGGGTTGAGTCAGTCCTT +
Preference number: 2 (lower is better)
Translates to: DYYNRSSFLRITLCT*ILVTETARWVESVL
Trigger: AAGGACTGACTCAACCCAACGAGCTGTCTCTGTAACTAATATCAATGTACATAGCGTAATCCTTAAGAAACTGCTTCTGTTGTAATAGTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
3UTR-3UTR GCA 90 bp TTTCTTAAGGATTACGCTATGTACATTGATATTAGTTACAGAGACAGCTCGTTGGTCTGCCTGATGTCTTaGAAATGTACAGTTCTGTCC +
Preference number: 2 (lower is better)
Translates to: FLKDYAMYIDISYRDSSLVCLMS*KCTVLS
Trigger: GGACAGAACTGTACATTTGCAAGACATCAGGCAGAC...CAACGAGCTGTCTCTGTAACTAATATCAATGTACATAGCGTAATCCTTAAGAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
3UTR-3UTR GCA 90 bp AGTTTCTTAAGGATTACGCTATGTACATTGATATTAGTTACAGAGACAGCTCGTACGTCACAGGAAGGATaGAGATGGAACAGATGTTAC +
Preference number: 2 (lower is better)
Translates to: SFLRITLCTLILVTETARTSQEG*RWNRCY
Trigger: GTAACATCTGTTCCATCTGCATCCTTCCTGTGACGT...ACGAGCTGTCTCTGTAACTAATATCAATGTACATAGCGTAATCCTTAAGAAACT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
3UTR TCA 72 bp GTGGCATTGCCTTCAGGTTCTGGATACATCCATGCATaGCGTCACAGGAAGGATGCAGATGGAACAGATGTT +
Preference number: 3 (lower is better)
Translates to: VALPSGSGYIHA*RHRKDADGTDV
Trigger: AACATCTGTTCCATCTGCATCCTTCCTGTGACGTCATGCATGGATGTATCCAGAACCTGAAGGCAATGCCAC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
3UTR GCA 72 bp GCAGATCTGATGTCCCATCCATCTGTATCTGGACTGTaGCTCGGGGTAGGGATTTCTGGATATAAGCGTTTT +
Preference number: 3 (lower is better)
Translates to: ADLMSHPSVSGL*LGVGISGYKRF
Trigger: AAAACGCTTATATCCAGAAATCCCTACCCCGAGGCACAGTCCAGATACAGATGGATGGGACATCAGATCTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
3UTR GCA 72 bp AAATGTGGCATTGCCTTCAGGTTCTGGATACATCCATaGATGACGTCACAGGAAGGATGCAGATGGAACAGA +
Preference number: 3 (lower is better)
Translates to: KCGIAFRFWIHP*MTSQEGCRWNR
Trigger: TCTGTTCCATCTGCATCCTTCCTGTGACGTCATGCATGGATGTATCCAGAACCTGAAGGCAATGCCACATTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
3UTR GCA 72 bp GAGACAGCTCGTTGGGTTGAGTCAGTCCTTTCCCGGTaGTTGGAGGTGATACTTATGATCCTAAGATCTAAA +
Preference number: 3 (lower is better)
Translates to: ETARWVESVLSR*LEVILMILRSK
Trigger: TTTAGATCTTAGGATCATAAGTATCACCTCCAAGCACCGGGAAAGGACTGACTCAACCCAACGAGCTGTCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
3UTR CCA 72 bp GCTTATAGCCTTGCTTTCATCCGAGCTGGTGGTGGATaGAGCAGAGGAAAAGATTTCAGCAAATCCAGGTAT +
Preference number: 3 (lower is better)
Translates to: AYSLAFIRAGGG*SRGKDFSKSRY
Trigger: ATACCTGGATTTGCTGAAATCTTTTCCTCTGCTCCATCCACCACCAGCTCGGATGAAAGCAAGGCTATAAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
3UTR GCA 72 bp TTCTGGATACATCCATGCATGACGTCACAGGAAGGATaGAGATGGAACAGATGTTACACAGTAGCAGCAACA +
Preference number: 3 (lower is better)
Translates to: FWIHPCMTSQEG*RWNRCYTVAAT
Trigger: TGTTGCTGCTACTGTGTAACATCTGTTCCATCTGCATCCTTCCTGTGACGTCATGCATGGATGTATCCAGAA
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
3UTR GCA 72 bp CTTCTTAAGGTCTTTATAAATAGGAGAGGACATGTCTaGCTGATGTCTTGCAAATGTACAGTTCTGTCCACT +
Preference number: 3 (lower is better)
Translates to: LLKVFINRRGHV*LMSCKCTVLST
Trigger: AGTGGACAGAACTGTACATTTGCAAGACATCAGGCAGACATGTCCTCTCCTATTTATAAAGACCTTAAGAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp ATGGTGGCAGATCTGATGTCCCATCCATCTGTATCTGGACTGTGCCTCGGGGTATGGCCCAGGCCTCGCTaGCCAGCCAGATCCTGCCTG +
Preference number: 4 (lower is better)
Translates to: MVADLMSHPSVSGLCLGVWPRPR*PARSCL
Trigger: CAGGCAGGATCTGGCTGGCCAGCGAGGCCTGGGCCA...TACCCCGAGGCACAGTCCAGATACAGATGGATGGGACATCAGATCTGCCACCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR TCA 90 bp ATGGTGGCAGATCTGATGTCCCATCCATCTGTATCTGGACTGTGCCTCGGGGTAGCCGAGCGCCATGAGTaGGCCCTCATGGCACGTGAT +
Preference number: 4 (lower is better)
Translates to: MVADLMSHPSVSGLCLGVAERHE*ALMARD
Trigger: ATCACGTGCCATGAGGGCTCACTCATGGCGCTCGGC...TACCCCGAGGCACAGTCCAGATACAGATGGATGGGACATCAGATCTGCCACCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp ATCCTTTTTCCTGGGACTCTAAGAAAAACTCTCAACCGGGTAACCTCTCCCTCCTGGCCCAGGCCTCGCTaGCCAGCCAGATCCTGCCTG +
Preference number: 4 (lower is better)
Translates to: ILFPGTLRKTLNRVTSPSWPRPR*PARSCL
Trigger: CAGGCAGGATCTGGCTGGCCAGCGAGGCCTGGGCCA...GGAGGGAGAGGTTACCCGGTTGAGAGTTTTTCTTAGAGTCCCAGGAAAAAGGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp ATGGTGGCAGATCTGATGTCCCATCCATCTGTATCTGGACTGTGCCTCGGGGTAGCATCTCGGCTGCTGTaGCTGTTGCTGTTGCTGCGG +
Preference number: 4 (lower is better)
Translates to: MVADLMSHPSVSGLCLGVASRLL*LLLLLR
Trigger: CCGCAGCAACAGCAACAGCCACAGCAGCCGAGATGC...TACCCCGAGGCACAGTCCAGATACAGATGGATGGGACATCAGATCTGCCACCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp ATGGTGGCAGATCTGATGTCCCATCCATCTGTATCTGGACTGTGCCTCGGGGTAGCCTCCAGGGAGTTCTaGCGCATGGAGTTCCTGTGG +
Preference number: 4 (lower is better)
Translates to: MVADLMSHPSVSGLCLGVASREF*RMEFLW
Trigger: CCACAGGAACTCCATGCGCCAGAACTCCCTGGAGGC...TACCCCGAGGCACAGTCCAGATACAGATGGATGGGACATCAGATCTGCCACCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR TCA 90 bp ATGGTGGCAGATCTGATGTCCCATCCATCTGTATCTGGACTGTGCCTCGGGGTACTCGGTTGGTGGCCTTaGCAATGGGCGTGTTTCGGA +
Preference number: 4 (lower is better)
Translates to: MVADLMSHPSVSGLCLGVLGWWP*QWACFG
Trigger: TCCGAAACACGCCCATTGTCAAGGCCACCAACCGAG...TACCCCGAGGCACAGTCCAGATACAGATGGATGGGACATCAGATCTGCCACCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR TCA 90 bp ATGGTGGCAGATCTGATGTCCCATCCATCTGTATCTGGACTGTGCCTCGGGGTATACAAAGCACGAAGCTaGTGCCGAAGGCGGGCTGTC +
Preference number: 4 (lower is better)
Translates to: MVADLMSHPSVSGLCLGVYKARS*CRRRAV
Trigger: GACAGCCCGCCTTCGGCATCAGCTTCGTGCTTTGTA...TACCCCGAGGCACAGTCCAGATACAGATGGATGGGACATCAGATCTGCCACCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp ATGGTGGCAGATCTGATGTCCCATCCATCTGTATCTGGACTGTGCCTCGGGGTACGGAAGCCTGGAATCTaGCCAGCCTTCAGACCGAAC +
Preference number: 4 (lower is better)
Translates to: MVADLMSHPSVSGLCLGVRKPGI*PAFRPN
Trigger: GTTCGGTCTGAAGGCTGGGCAGATTCCAGGCTTCCG...TACCCCGAGGCACAGTCCAGATACAGATGGATGGGACATCAGATCTGCCACCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp GTCACAGGAAGGATGCAGATGGAACAGATGTTACACAGTAGCAGCAACAGGGAGGGCTGTTGCTGTTGCTaGGGCTGGAGAGTCAGGGGC +
Preference number: 4 (lower is better)
Translates to: VTGRMQMEQMLHSSSNREGCCCC*GWRVRG
Trigger: GCCCCTGACTCTCCAGCCGCAGCAACAGCAACAGCC...CTCCCTGTTGCTGCTACTGTGTAACATCTGTTCCATCTGCATCCTTCCTGTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp GTCACAGGAAGGATGCAGATGGAACAGATGTTACACAGTAGCAGCAACAGGGAGAGCTGGCTGCCAGGATaGCGATCACCTCCACGGCAG +
Preference number: 4 (lower is better)
Translates to: VTGRMQMEQMLHSSSNRESWLPG*RSPPRQ
Trigger: CTGCCGTGGAGGTGATCGCCATCCTGGCAGCCAGCT...CTCCCTGTTGCTGCTACTGTGTAACATCTGTTCCATCTGCATCCTTCCTGTGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp GTCACAGGAAGGATGCAGATGGAACAGATGTTACACAGTAGCAGCAACAGGGAGAGGGAATCGACCCAGTaGAGCCTCCGAGGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: VTGRMQMEQMLHSSSNRERESTQ*SLRGCW
Trigger: CCAGCAGCCTCGGAGGCTCCACTGGGTCGATTCCCT...CTCCCTGTTGCTGCTACTGTGTAACATCTGTTCCATCTGCATCCTTCCTGTGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp ACGTCACAGGAAGGATGCAGATGGAACAGATGTTACACAGTAGCAGCAACAGGGGTGGTCCCCCACCATTaGCCCTTGCAAGCCCGTCTC +
Preference number: 4 (lower is better)
Translates to: TSQEGCRWNRCYTVAATGVVPHH*PLQARL
Trigger: GAGACGGGCTTGCAAGGGCCAATGGTGGGGGACCAC...CCCTGTTGCTGCTACTGTGTAACATCTGTTCCATCTGCATCCTTCCTGTGACGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp GTCACAGGAAGGATGCAGATGGAACAGATGTTACACAGTAGCAGCAACAGGGAGGTCAGGGGCTGCTGCTaGTGTTCTTGCTGGGTCAGG +
Preference number: 4 (lower is better)
Translates to: VTGRMQMEQMLHSSSNREVRGCC*CSCWVR
Trigger: CCTGACCCAGCAAGAACAGCAGCAGCAGCCCCTGAC...CTCCCTGTTGCTGCTACTGTGTAACATCTGTTCCATCTGCATCCTTCCTGTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp TTTTTAGAGGGAAGCAGGTGGGTAGCTTATAGCCTTGCTTTCATCCGAGCTGGTGGCTGTTGCTGTTGCTaGGGCTGGAGAGTCAGGGGC +
Preference number: 4 (lower is better)
Translates to: FLEGSRWVAYSLAFIRAGGCCCC*GWRVRG
Trigger: GCCCCTGACTCTCCAGCCGCAGCAACAGCAACAGCC...ACCAGCTCGGATGAAAGCAAGGCTATAAGCTACCCACCTGCTTCCCTCTAAAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp GTCACAGGAAGGATGCAGATGGAACAGATGTTACACAGTAGCAGCAACAGGGAGGGCTGCTGTGGCTGTTaGTGTTGCTGCGGCTGGAGA +
Preference number: 4 (lower is better)
Translates to: VTGRMQMEQMLHSSSNREGCCGC*CCCGWR
Trigger: TCTCCAGCCGCAGCAACAGCAACAGCCACAGCAGCC...CTCCCTGTTGCTGCTACTGTGTAACATCTGTTCCATCTGCATCCTTCCTGTGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp GTCACAGGAAGGATGCAGATGGAACAGATGTTACACAGTAGCAGCAACAGGGAGGCATCTCGGCTGCTGTaGCTGTTGCTGTTGCTGCGG +
Preference number: 4 (lower is better)
Translates to: VTGRMQMEQMLHSSSNREASRLL*LLLLLR
Trigger: CCGCAGCAACAGCAACAGCCACAGCAGCCGAGATGC...CTCCCTGTTGCTGCTACTGTGTAACATCTGTTCCATCTGCATCCTTCCTGTGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp GTCACAGGAAGGATGCAGATGGAACAGATGTTACACAGTAGCAGCAACAGGGAGGCCTCCAGGGAGTTCTaGCGCATGGAGTTCCTGTGG +
Preference number: 4 (lower is better)
Translates to: VTGRMQMEQMLHSSSNREASREF*RMEFLW
Trigger: CCACAGGAACTCCATGCGCCAGAACTCCCTGGAGGC...CTCCCTGTTGCTGCTACTGTGTAACATCTGTTCCATCTGCATCCTTCCTGTGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR TCA 90 bp ATGGTGGCAGATCTGATGTCCCATCCATCTGTATCTGGACTGTGCCTCGGGGTAGGGTCTCGACACTATTaGTGTTTTCATCCCCCGTGC +
Preference number: 4 (lower is better)
Translates to: MVADLMSHPSVSGLCLGVGSRHY*CFHPPC
Trigger: GCACGGGGGATGAAAACATCAATAGTGTCGAGACCC...TACCCCGAGGCACAGTCCAGATACAGATGGATGGGACATCAGATCTGCCACCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR TCA 90 bp TTTTTAGAGGGAAGCAGGTGGGTAGCTTATAGCCTTGCTTTCATCCGAGCTGGTTGGGCTCTCCCTCAATaGTGCCCTTCCTGGTCCCTG +
Preference number: 4 (lower is better)
Translates to: FLEGSRWVAYSLAFIRAGWALPQ*CPSWSL
Trigger: CAGGGACCAGGAAGGGCATCATTGAGGGAGAGCCCA...ACCAGCTCGGATGAAAGCAAGGCTATAAGCTACCCACCTGCTTCCCTCTAAAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR TCA 90 bp GTCACAGGAAGGATGCAGATGGAACAGATGTTACACAGTAGCAGCAACAGGGAGCTCGGTTGGTGGCCTTaGCAATGGGCGTGTTTCGGA +
Preference number: 4 (lower is better)
Translates to: VTGRMQMEQMLHSSSNRELGWWP*QWACFG
Trigger: TCCGAAACACGCCCATTGTCAAGGCCACCAACCGAG...CTCCCTGTTGCTGCTACTGTGTAACATCTGTTCCATCTGCATCCTTCCTGTGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp CTTATAGCCTTGCTTTCATCCGAGCTGGTGGTGGATGGAGCAGAGGAAAAGATTGTCAGGGGCTGCTGCTaGTGTTCTTGCTGGGTCAGG +
Preference number: 4 (lower is better)
Translates to: LIALLSSELVVDGAEEKIVRGCC*CSCWVR
Trigger: CCTGACCCAGCAAGAACAGCAGCAGCAGCCCCTGAC...AATCTTTTCCTCTGCTCCATCCACCACCAGCTCGGATGAAAGCAAGGCTATAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp ACGTCACAGGAAGGATGCAGATGGAACAGATGTTACACAGTAGCAGCAACAGGGATGTCCCCCTTCTTTTaGGCTCGCTGGTCAGGCCCA +
Preference number: 4 (lower is better)
Translates to: TSQEGCRWNRCYTVAATGMSPFF*ARWSGP
Trigger: TGGGCCTGACCAGCGAGCCCAAAAGAAGGGGGACAT...CCCTGTTGCTGCTACTGTGTAACATCTGTTCCATCTGCATCCTTCCTGTGACGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR TCA 90 bp ATCCTTTTTCCTGGGACTCTAAGAAAAACTCTCAACCGGGTAACCTCTCCCTCCTACAAAGCACGAAGCTaGTGCCGAAGGCGGGCTGTC +
Preference number: 4 (lower is better)
Translates to: ILFPGTLRKTLNRVTSPSYKARS*CRRRAV
Trigger: GACAGCCCGCCTTCGGCATCAGCTTCGTGCTTTGTA...GGAGGGAGAGGTTACCCGGTTGAGAGTTTTTCTTAGAGTCCCAGGAAAAAGGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR TCA 90 bp AGGACATGTCTGCCTGATGTCTTGCAAATGTACAGTTCTGTCCACTGTCAATGTCGCGGGCTGCCACTTTaGAAGCATGAGCCGCAGTGC +
Preference number: 4 (lower is better)
Translates to: RTCLPDVLQMYSSVHCQCRGLPL*KHEPQC
Trigger: GCACTGCGGCTCATGCTTTCAAAGTGGCAGCCCGCG...ACATTGACAGTGGACAGAACTGTACATTTGCAAGACATCAGGCAGACATGTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR TCA 90 bp GTCACAGGAAGGATGCAGATGGAACAGATGTTACACAGTAGCAGCAACAGGGAGTCCGAGAGGTGGACATaGCCAGAGCTGGGGACATTT +
Preference number: 4 (lower is better)
Translates to: VTGRMQMEQMLHSSSNRESERWT*PELGTF
Trigger: AAATGTCCCCAGCTCTGGTCATGTCCACCTCTCGGA...CTCCCTGTTGCTGCTACTGTGTAACATCTGTTCCATCTGCATCCTTCCTGTGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp TATAGCCTTGCTTTCATCCGAGCTGGTGGTGGATGGAGCAGAGGAAAAGATTTCCGTCGGCTGCAATTGTaGCCACCCAGTTCCAACGGA +
Preference number: 4 (lower is better)
Translates to: YSLAFIRAGGGWSRGKDFRRLQL*PPSSNG
Trigger: TCCGTTGGAACTGGGTGGGCACAATTGCAGCCGACG...GAAATCTTTTCCTCTGCTCCATCCACCACCAGCTCGGATGAAAGCAAGGCTATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp ACGTCACAGGAAGGATGCAGATGGAACAGATGTTACACAGTAGCAGCAACAGGGCGGCAGAGACAAACTTaGCGTAGGTGCTGGCATAGG +
Preference number: 4 (lower is better)
Translates to: TSQEGCRWNRCYTVAATGRQRQT*RRCWHR
Trigger: CCTATGCCAGCACCTACGGCAAGTTTGTCTCTGCCG...CCCTGTTGCTGCTACTGTGTAACATCTGTTCCATCTGCATCCTTCCTGTGACGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp CTTATAGCCTTGCTTTCATCCGAGCTGGTGGTGGATGGAGCAGAGGAAAAGATTCAAGCCAAAGCTGGCTaGCAGGATGGCGATCACCTC +
Preference number: 4 (lower is better)
Translates to: LIALLSSELVVDGAEEKIQAKAG*QDGDHL
Trigger: GAGGTGATCGCCATCCTGGCAGCCAGCTTTGGCTTG...AATCTTTTCCTCTGCTCCATCCACCACCAGCTCGGATGAAAGCAAGGCTATAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp TTTTTAGAGGGAAGCAGGTGGGTAGCTTATAGCCTTGCTTTCATCCGAGCTGGTGCCAGTGGTTGCTGTTaGTTCTGCCTCTCCGGCTGT +
Preference number: 4 (lower is better)
Translates to: FLEGSRWVAYSLAFIRAGASGCC*FCLSGC
Trigger: ACAGCCGGAGAGGCAGAAGCAACAGCAACCACTGGC...ACCAGCTCGGATGAAAGCAAGGCTATAAGCTACCCACCTGCTTCCCTCTAAAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp ATCCTTTTTCCTGGGACTCTAAGAAAAACTCTCAACCGGGTAACCTCTCCCTCCGTCAGGGCCAGTGGTTaGTGTTGCTTCTGCCTCTCC +
Preference number: 4 (lower is better)
Translates to: ILFPGTLRKTLNRVTSPSVRASG*CCFCLS
Trigger: GGAGAGGCAGAAGCAACAGCAACCACTGGCCCTGAC...GGAGGGAGAGGTTACCCGGTTGAGAGTTTTTCTTAGAGTCCCAGGAAAAAGGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp CTTATAGCCTTGCTTTCATCCGAGCTGGTGGTGGATGGAGCAGAGGAAAAGATTGTCAGGGCCAGTGGTTaGTGTTGCTTCTGCCTCTCC +
Preference number: 4 (lower is better)
Translates to: LIALLSSELVVDGAEEKIVRASG*CCFCLS
Trigger: GGAGAGGCAGAAGCAACAGCAACCACTGGCCCTGAC...AATCTTTTCCTCTGCTCCATCCACCACCAGCTCGGATGAAAGCAAGGCTATAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp ATCCTTTTTCCTGGGACTCTAAGAAAAACTCTCAACCGGGTAACCTCTCCCTCCAGAGTCAGGGGCTGCTaGTGCTGTTCTTGCTGGGTC +
Preference number: 4 (lower is better)
Translates to: ILFPGTLRKTLNRVTSPSRVRGC*CCSCWV
Trigger: GACCCAGCAAGAACAGCAGCAGCAGCCCCTGACTCT...GGAGGGAGAGGTTACCCGGTTGAGAGTTTTTCTTAGAGTCCCAGGAAAAAGGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp ATCCTTTTTCCTGGGACTCTAAGAAAAACTCTCAACCGGGTAACCTCTCCCTCCATGTCCCCCTTCTTTTaGGCTCGCTGGTCAGGCCCA +
Preference number: 4 (lower is better)
Translates to: ILFPGTLRKTLNRVTSPSMSPFF*ARWSGP
Trigger: TGGGCCTGACCAGCGAGCCCAAAAGAAGGGGGACAT...GGAGGGAGAGGTTACCCGGTTGAGAGTTTTTCTTAGAGTCCCAGGAAAAAGGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp ATGGTGGCAGATCTGATGTCCCATCCATCTGTATCTGGACTGTGCCTCGGGGTACAACAAAACTCAAGGTaGCCTCCAGAGCCTTGGAGA +
Preference number: 4 (lower is better)
Translates to: MVADLMSHPSVSGLCLGVQQNSR*PPEPWR
Trigger: TCTCCAAGGCTCTGGAGGCCACCTTGAGTTTTGTTG...TACCCCGAGGCACAGTCCAGATACAGATGGATGGGACATCAGATCTGCCACCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp AGGACATGTCTGCCTGATGTCTTGCAAATGTACAGTTCTGTCCACTGTCAATGTCAATCAGGGAGGAACTaGCCCAGGCCTCGCTGGCCA +
Preference number: 4 (lower is better)
Translates to: RTCLPDVLQMYSSVHCQCQSGRN*PRPRWP
Trigger: TGGCCAGCGAGGCCTGGGCCAGTTCCTCCCTGATTG...ACATTGACAGTGGACAGAACTGTACATTTGCAAGACATCAGGCAGACATGTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp ACGTCACAGGAAGGATGCAGATGGAACAGATGTTACACAGTAGCAGCAACAGGGCCCCACCACTTCCGGTaGAAGCTGGTGGGTATTTTG +
Preference number: 4 (lower is better)
Translates to: TSQEGCRWNRCYTVAATGPHHFR*KLVGIL
Trigger: CAAAATACCCACCAGCTTCCACCGGAAGTGGTGGGG...CCCTGTTGCTGCTACTGTGTAACATCTGTTCCATCTGCATCCTTCCTGTGACGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp GTTCTGTCCACTGTCAATGTGATAGACAGTCCTGGTGACTATCTGGCTTTTAGAAGGGAATCGACCCAGTaGAGCCTCCGAGGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: VLSTVNVIDSPGDYLAFRRESTQ*SLRGCW
Trigger: CCAGCAGCCTCGGAGGCTCCACTGGGTCGATTCCCT...TCTAAAAGCCAGATAGTCACCAGGACTGTCTATCACATTGACAGTGGACAGAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp TGTACAGTTCTGTCCACTGTCAATGTGATAGACAGTCCTGGTGACTATCTGGCTCTGCCTCTCCGGCTGTaGGAACCGGTCTTCGCTGTT +
Preference number: 4 (lower is better)
Translates to: CTVLSTVNVIDSPGDYLALPLRL*EPVFAV
Trigger: AACAGCGAAGACCGGTTCCCACAGCCGGAGAGGCAG...AGCCAGATAGTCACCAGGACTGTCTATCACATTGACAGTGGACAGAACTGTACA
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp ATCCTTTTTCCTGGGACTCTAAGAAAAACTCTCAACCGGGTAACCTCTCCCTCCTGCTGCTGTTCTTGCTaGGTCAGGGCCAGTGGTTGC +
Preference number: 4 (lower is better)
Translates to: ILFPGTLRKTLNRVTSPSCCCSC*VRASGC
Trigger: GCAACCACTGGCCCTGACCCAGCAAGAACAGCAGCA...GGAGGGAGAGGTTACCCGGTTGAGAGTTTTTCTTAGAGTCCCAGGAAAAAGGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp CTAAGATCTAAATGTGGCATTGCCTTCAGGTTCTGGATACATCCATGCATGACGTGCTGTTGCTGCGGCTaGAGAGTCAGGGGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: LRSKCGIAFRFWIHPCMTCCCCG*RVRGCC
Trigger: GCAGCAGCCCCTGACTCTCCAGCCGCAGCAACAGCA...CGTCATGCATGGATGTATCCAGAACCTGAAGGCAATGCCACATTTAGATCTTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp GTTCTGTCCACTGTCAATGTGATAGACAGTCCTGGTGACTATCTGGCTTTTAGAGTGGTCCCCCACCATTaGCCCTTGCAAGCCCGTCTC +
Preference number: 4 (lower is better)
Translates to: VLSTVNVIDSPGDYLAFRVVPHH*PLQARL
Trigger: GAGACGGGCTTGCAAGGGCCAATGGTGGGGGACCAC...TCTAAAAGCCAGATAGTCACCAGGACTGTCTATCACATTGACAGTGGACAGAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR TCA 90 bp CCTGATGTCTTGCAAATGTACAGTTCTGTCCACTGTCAATGTGATAGACAGTCCCCTGGGGCTCCCCAATaGAGAACAGGGAGCTGGAGA +
Preference number: 4 (lower is better)
Translates to: PDVLQMYSSVHCQCDRQSPGAPQ*RTGSWR
Trigger: TCTCCAGCTCCCTGTTCTTCATTGGGGAGCCCCAGG...GGACTGTCTATCACATTGACAGTGGACAGAACTGTACATTTGCAAGACATCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp TGTACAGTTCTGTCCACTGTCAATGTGATAGACAGTCCTGGTGACTATCTGGCTCGGAAGCCTGGAATCTaGCCAGCCTTCAGACCGAAC +
Preference number: 4 (lower is better)
Translates to: CTVLSTVNVIDSPGDYLARKPGI*PAFRPN
Trigger: GTTCGGTCTGAAGGCTGGGCAGATTCCAGGCTTCCG...AGCCAGATAGTCACCAGGACTGTCTATCACATTGACAGTGGACAGAACTGTACA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp GTCACAGGAAGGATGCAGATGGAACAGATGTTACACAGTAGCAGCAACAGGGAGAAAACCAGCAGGAACTaGAGGTTGAGTCCCCACCAC +
Preference number: 4 (lower is better)
Translates to: VTGRMQMEQMLHSSSNREKTSRN*RLSPHH
Trigger: GTGGTGGGGACTCAACCTGCAGTTCCTGCTGGTTTT...CTCCCTGTTGCTGCTACTGTGTAACATCTGTTCCATCTGCATCCTTCCTGTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp TGTACAGTTCTGTCCACTGTCAATGTGATAGACAGTCCTGGTGACTATCTGGCTTGGAGAGTCAGGGGCTaGTGCTGCTGTTCTTGCTGG +
Preference number: 4 (lower is better)
Translates to: CTVLSTVNVIDSPGDYLAWRVRG*CCCSCW
Trigger: CCAGCAAGAACAGCAGCAGCAGCCCCTGACTCTCCA...AGCCAGATAGTCACCAGGACTGTCTATCACATTGACAGTGGACAGAACTGTACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp CCTGATGTCTTGCAAATGTACAGTTCTGTCCACTGTCAATGTGATAGACAGTCCGGCTGCTGTGGCTGTTaGTGTTGCTGCGGCTGGAGA +
Preference number: 4 (lower is better)
Translates to: PDVLQMYSSVHCQCDRQSGCCGC*CCCGWR
Trigger: TCTCCAGCCGCAGCAACAGCAACAGCCACAGCAGCC...GGACTGTCTATCACATTGACAGTGGACAGAACTGTACATTTGCAAGACATCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp TATAGCCTTGCTTTCATCCGAGCTGGTGGTGGATGGAGCAGAGGAAAAGATTTCAAAGTCCCAGCAGGTTaGCTACCGCTGTGGAGACAC +
Preference number: 4 (lower is better)
Translates to: YSLAFIRAGGGWSRGKDFKVPAG*LPLWRH
Trigger: GTGTCTCCACAGCGGTAGCCAACCTGCTGGGACTTT...GAAATCTTTTCCTCTGCTCCATCCACCACCAGCTCGGATGAAAGCAAGGCTATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp ATGGTGGCAGATCTGATGTCCCATCCATCTGTATCTGGACTGTGCCTCGGGGTATGTGGACAGACTTCCTaGGATGGACTTTCTGTAGGA +
Preference number: 4 (lower is better)
Translates to: MVADLMSHPSVSGLCLGVCGQTS*DGLSVG
Trigger: TCCTACAGAAAGTCCATCCCAGGAAGTCTGTCCACA...TACCCCGAGGCACAGTCCAGATACAGATGGATGGGACATCAGATCTGCCACCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp CTTATAGCCTTGCTTTCATCCGAGCTGGTGGTGGATGGAGCAGAGGAAAAGATTCTAGCAAGCCAAAGCTaGCTGCCAGGATGGCGATCA +
Preference number: 4 (lower is better)
Translates to: LIALLSSELVVDGAEEKILASQS*LPGWRS
Trigger: TGATCGCCATCCTGGCAGCCAGCTTTGGCTTGCTAG...AATCTTTTCCTCTGCTCCATCCACCACCAGCTCGGATGAAAGCAAGGCTATAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp TATAGCCTTGCTTTCATCCGAGCTGGTGGTGGATGGAGCAGAGGAAAAGATTTCCTAGCAAGCCAAAGCTaGCTGCCAGGATGGCGATCA +
Preference number: 4 (lower is better)
Translates to: YSLAFIRAGGGWSRGKDFLASQS*LPGWRS
Trigger: TGATCGCCATCCTGGCAGCCAGCTTTGGCTTGCTAG...GAAATCTTTTCCTCTGCTCCATCCACCACCAGCTCGGATGAAAGCAAGGCTATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp ATCCTAAGATCTAAATGTGGCATTGCCTTCAGGTTCTGGATACATCCATGCATGCATGAGCCGCAGTGCTaGAGCGCACCTCCTCGATGG +
Preference number: 4 (lower is better)
Translates to: ILRSKCGIAFRFWIHPCMHEPQC*SAPPRW
Trigger: CCATCGAGGAGGTGCGCTCCAGCACTGCGGCTCATG...CATGCATGGATGTATCCAGAACCTGAAGGCAATGCCACATTTAGATCTTAGGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp GTTCTGTCCACTGTCAATGTGATAGACAGTCCTGGTGACTATCTGGCTTTTAGACTGCCTCTCCGGCTGTaGGAACCGGTCTTCGCTGTT +
Preference number: 4 (lower is better)
Translates to: VLSTVNVIDSPGDYLAFRLPLRL*EPVFAV
Trigger: AACAGCGAAGACCGGTTCCCACAGCCGGAGAGGCAG...TCTAAAAGCCAGATAGTCACCAGGACTGTCTATCACATTGACAGTGGACAGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp TTTTTAGAGGGAAGCAGGTGGGTAGCTTATAGCCTTGCTTTCATCCGAGCTGGTTCTATTTCTGGCTGGTaGTCCCCCACCATTGGCCCT +
Preference number: 4 (lower is better)
Translates to: FLEGSRWVAYSLAFIRAGSISGW*SPTIGP
Trigger: AGGGCCAATGGTGGGGGACCACCAGCCAGAAATAGA...ACCAGCTCGGATGAAAGCAAGGCTATAAGCTACCCACCTGCTTCCCTCTAAAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp ACGTCACAGGAAGGATGCAGATGGAACAGATGTTACACAGTAGCAGCAACAGGGGGACATGACCAGAGCTaGGGACATTTCATCTGGGCT +
Preference number: 4 (lower is better)
Translates to: TSQEGCRWNRCYTVAATGGHDQS*GHFIWA
Trigger: AGCCCAGATGAAATGTCCCCAGCTCTGGTCATGTCC...CCCTGTTGCTGCTACTGTGTAACATCTGTTCCATCTGCATCCTTCCTGTGACGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR TCA 90 bp CTTATAGCCTTGCTTTCATCCGAGCTGGTGGTGGATGGAGCAGAGGAAAAGATTGGGTCTCGACACTATTaGTGTTTTCATCCCCCGTGC +
Preference number: 4 (lower is better)
Translates to: LIALLSSELVVDGAEEKIGSRHY*CFHPPC
Trigger: GCACGGGGGATGAAAACATCAATAGTGTCGAGACCC...AATCTTTTCCTCTGCTCCATCCACCACCAGCTCGGATGAAAGCAAGGCTATAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR TCA 90 bp ACGTCACAGGAAGGATGCAGATGGAACAGATGTTACACAGTAGCAGCAACAGGGGCAGCTTCCGAGACTTaGAGGCAAAGAAGAAGCAGA +
Preference number: 4 (lower is better)
Translates to: TSQEGCRWNRCYTVAATGAASET*RQRRSR
Trigger: TCTGCTTCTTCTTTGCCTTCAAGTCTCGGAAGCTGC...CCCTGTTGCTGCTACTGTGTAACATCTGTTCCATCTGCATCCTTCCTGTGACGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR TCA 90 bp GTCACAGGAAGGATGCAGATGGAACAGATGTTACACAGTAGCAGCAACAGGGAGCTCGATGGTGTTCCGTaGAGGCTTGAAGAGGATGAT +
Preference number: 4 (lower is better)
Translates to: VTGRMQMEQMLHSSSNRELDGVP*RLEEDD
Trigger: ATCATCCTCTTCAAGCCTTCACGGAACACCATCGAG...CTCCCTGTTGCTGCTACTGTGTAACATCTGTTCCATCTGCATCCTTCCTGTGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp TATAGCCTTGCTTTCATCCGAGCTGGTGGTGGATGGAGCAGAGGAAAAGATTTCGAAGAAGGGCGGGGCTaGTGTTTATCTCCTCTATGG +
Preference number: 4 (lower is better)
Translates to: YSLAFIRAGGGWSRGKDFEEGRG*CLSPLW
Trigger: CCATAGAGGAGATAAACAGCAGCCCCGCCCTTCTTC...GAAATCTTTTCCTCTGCTCCATCCACCACCAGCTCGGATGAAAGCAAGGCTATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp TATAGCCTTGCTTTCATCCGAGCTGGTGGTGGATGGAGCAGAGGAAAAGATTTCATAGTCGTCGTCGGCTaGAATTGTGCCCACCCAGTT +
Preference number: 4 (lower is better)
Translates to: YSLAFIRAGGGWSRGKDFIVVVG*NCAHPV
Trigger: AACTGGGTGGGCACAATTGCAGCCGACGACGACTAT...GAAATCTTTTCCTCTGCTCCATCCACCACCAGCTCGGATGAAAGCAAGGCTATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp GTTCTGTCCACTGTCAATGTGATAGACAGTCCTGGTGACTATCTGGCTTTTAGAGGTTGCTGTTGCTTCTaGCTCTCCGGCTGTGGGAAC +
Preference number: 4 (lower is better)
Translates to: VLSTVNVIDSPGDYLAFRGCCCF*LSGCGN
Trigger: GTTCCCACAGCCGGAGAGGCAGAAGCAACAGCAACC...TCTAAAAGCCAGATAGTCACCAGGACTGTCTATCACATTGACAGTGGACAGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp GTTCTGTCCACTGTCAATGTGATAGACAGTCCTGGTGACTATCTGGCTTTTAGAAGAGTCAGGGGCTGCTaGTGCTGTTCTTGCTGGGTC +
Preference number: 4 (lower is better)
Translates to: VLSTVNVIDSPGDYLAFRRVRGC*CCSCWV
Trigger: GACCCAGCAAGAACAGCAGCAGCAGCCCCTGACTCT...TCTAAAAGCCAGATAGTCACCAGGACTGTCTATCACATTGACAGTGGACAGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp ATCCTTTTTCCTGGGACTCTAAGAAAAACTCTCAACCGGGTAACCTCTCCCTCCAGAAGGGCACCTCTCTaGAGAACCCACTCCACAAGA +
Preference number: 4 (lower is better)
Translates to: ILFPGTLRKTLNRVTSPSRRAPL*RTHSTR
Trigger: TCTTGTGGAGTGGGTTCTCCAGAGAGGTGCCCTTCT...GGAGGGAGAGGTTACCCGGTTGAGAGTTTTTCTTAGAGTCCCAGGAAAAAGGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000063597.14
CDS-3UTR CCA 90 bp GTCACAGGAAGGATGCAGATGGAACAGATGTTACACAGTAGCAGCAACAGGGAGAAGTGTGGTTCTCATTaGACCAGAAGTCATCCGGGC +
Preference number: 4 (lower is better)
Translates to: VTGRMQMEQMLHSSSNREKCGSH*TRSHPG
Trigger: GCCCGGATGACTTCTGGTCCAATGAGAACCACACTT...CTCCCTGTTGCTGCTACTGTGTAACATCTGTTCCATCTGCATCCTTCCTGTGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp GTCACAGGAAGGATGCAGATGGAACAGATGTTACACAGTAGCAGCAACAGGGAGACTTCCGGTGGAAGCTaGTGGGTATTTTGGCCTCAA +
Preference number: 4 (lower is better)
Translates to: VTGRMQMEQMLHSSSNRETSGGS*WVFWPQ
Trigger: TTGAGGCCAAAATACCCACCAGCTTCCACCGGAAGT...CTCCCTGTTGCTGCTACTGTGTAACATCTGTTCCATCTGCATCCTTCCTGTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp ATGGTGGCAGATCTGATGTCCCATCCATCTGTATCTGGACTGTGCCTCGGGGTAATGAGTGAGCCCTCATaGCACGTGATGAAGATGATT +
Preference number: 4 (lower is better)
Translates to: MVADLMSHPSVSGLCLGVMSEPS*HVMKMI
Trigger: AATCATCTTCATCACGTGCCATGAGGGCTCACTCAT...TACCCCGAGGCACAGTCCAGATACAGATGGATGGGACATCAGATCTGCCACCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp TTTTTAGAGGGAAGCAGGTGGGTAGCTTATAGCCTTGCTTTCATCCGAGCTGGTGGTGCTGGCATAGGCTaGAATGAAGGAGATCCAGAC +
Preference number: 4 (lower is better)
Translates to: FLEGSRWVAYSLAFIRAGGAGIG*NEGDPD
Trigger: GTCTGGATCTCCTTCATTCCAGCCTATGCCAGCACC...ACCAGCTCGGATGAAAGCAAGGCTATAAGCTACCCACCTGCTTCCCTCTAAAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR TCA 90 bp CTAAGATCTAAATGTGGCATTGCCTTCAGGTTCTGGATACATCCATGCATGACGGCACCGCAAAGAGAGTaGGAGCGATTCCAAAGGGCT +
Preference number: 4 (lower is better)
Translates to: LRSKCGIAFRFWIHPCMTAPQRE*ERFQRA
Trigger: AGCCCTTTGGAATCGCTCTCACTCTCTTTGCGGTGC...CGTCATGCATGGATGTATCCAGAACCTGAAGGCAATGCCACATTTAGATCTTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp TTTTTAGAGGGAAGCAGGTGGGTAGCTTATAGCCTTGCTTTCATCCGAGCTGGTCAGGTGTATATATCTTaGAGGGCGTGCGCAATGGAG +
Preference number: 4 (lower is better)
Translates to: FLEGSRWVAYSLAFIRAGQVYIS*RACAME
Trigger: CTCCATTGCGCACGCCCTGCAAGATATATACACCTG...ACCAGCTCGGATGAAAGCAAGGCTATAAGCTACCCACCTGCTTCCCTCTAAAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp TGTACAGTTCTGTCCACTGTCAATGTGATAGACAGTCCTGGTGACTATCTGGCTAGGTGTTTCAGGACCTaGCAGGCCTCAACCTTCTTG +
Preference number: 4 (lower is better)
Translates to: CTVLSTVNVIDSPGDYLARCFRT*QASTFL
Trigger: CAAGAAGGTTGAGGCCTGGCAGGTCCTGAAACACCT...AGCCAGATAGTCACCAGGACTGTCTATCACATTGACAGTGGACAGAACTGTACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063597.14
CDS-3UTR GCA 90 bp GTCACAGGAAGGATGCAGATGGAACAGATGTTACACAGTAGCAGCAACAGGGAGTTGGTGAAATTCAGGTaGCGTAGGTGTTTCAGGACC +
Preference number: 4 (lower is better)
Translates to: VTGRMQMEQMLHSSSNRELVKFR*RRCFRT
Trigger: GGTCCTGAAACACCTACGGCACCTGAATTTCACCAA...CTCCCTGTTGCTGCTACTGTGTAACATCTGTTCCATCTGCATCCTTCCTGTGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063597.14
CDS-3UTR GCA 90 bp ATCCTAAGATCTAAATGTGGCATTGCCTTCAGGTTCTGGATACATCCATGCATGCAAGCCAAAGCTGGCTaGCAGGATGGCGATCACCTC +
Preference number: 4 (lower is better)
Translates to: ILRSKCGIAFRFWIHPCMQAKAG*QDGDHL
Trigger: GAGGTGATCGCCATCCTGGCAGCCAGCTTTGGCTTG...CATGCATGGATGTATCCAGAACCTGAAGGCAATGCCACATTTAGATCTTAGGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp ATCCTAAGATCTAAATGTGGCATTGCCTTCAGGTTCTGGATACATCCATGCATGGCCAGTGGTTGCTGTTaGTTCTGCCTCTCCGGCTGT +
Preference number: 4 (lower is better)
Translates to: ILRSKCGIAFRFWIHPCMASGCC*FCLSGC
Trigger: ACAGCCGGAGAGGCAGAAGCAACAGCAACCACTGGC...CATGCATGGATGTATCCAGAACCTGAAGGCAATGCCACATTTAGATCTTAGGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp ATCCTAAGATCTAAATGTGGCATTGCCTTCAGGTTCTGGATACATCCATGCATGTGGAGAGTCAGGGGCTaGTGCTGCTGTTCTTGCTGG +
Preference number: 4 (lower is better)
Translates to: ILRSKCGIAFRFWIHPCMWRVRG*CCCSCW
Trigger: CCAGCAAGAACAGCAGCAGCAGCCCCTGACTCTCCA...CATGCATGGATGTATCCAGAACCTGAAGGCAATGCCACATTTAGATCTTAGGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp ATCCTTTTTCCTGGGACTCTAAGAAAAACTCTCAACCGGGTAACCTCTCCCTCCTGTTCAAAGTGTCATTaGTCTTCTGGGCCTCCAGGG +
Preference number: 4 (lower is better)
Translates to: ILFPGTLRKTLNRVTSPSCSKCH*SSGPPG
Trigger: CCCTGGAGGCCCAGAAGAGCAATGACACTTTGAACA...GGAGGGAGAGGTTACCCGGTTGAGAGTTTTTCTTAGAGTCCCAGGAAAAAGGAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp CTAAGATCTAAATGTGGCATTGCCTTCAGGTTCTGGATACATCCATGCATGACGTTGGAGAAGGGCACCTaGCAGGCCTCAACCTTCTTG +
Preference number: 4 (lower is better)
Translates to: LRSKCGIAFRFWIHPCMTLEKGT*QASTFL
Trigger: CAAGAAGGTTGAGGCCTGGCAGGTGCCCTTCTCCAA...CGTCATGCATGGATGTATCCAGAACCTGAAGGCAATGCCACATTTAGATCTTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp CTAAGATCTAAATGTGGCATTGCCTTCAGGTTCTGGATACATCCATGCATGACGTGGCCTCCAGAGCCTTaGAGACGGTGTTACAGGTGT +
Preference number: 4 (lower is better)
Translates to: LRSKCGIAFRFWIHPCMTWPPEP*RRCYRC
Trigger: ACACCTGTAACACCGTCTCCAAGGCTCTGGAGGCCA...CGTCATGCATGGATGTATCCAGAACCTGAAGGCAATGCCACATTTAGATCTTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp TTTTTAGAGGGAAGCAGGTGGGTAGCTTATAGCCTTGCTTTCATCCGAGCTGGTCAACAAAACTCAAGGTaGCCTCCAGAGCCTTGGAGA +
Preference number: 4 (lower is better)
Translates to: FLEGSRWVAYSLAFIRAGQQNSR*PPEPWR
Trigger: TCTCCAAGGCTCTGGAGGCCACCTTGAGTTTTGTTG...ACCAGCTCGGATGAAAGCAAGGCTATAAGCTACCCACCTGCTTCCCTCTAAAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp TTTATAAATAGGAGAGGACATGTCTGCCTGATGTCTTGCAAATGTACAGTTCTGCAATCAGGGAGGAACTaGCCCAGGCCTCGCTGGCCA +
Preference number: 4 (lower is better)
Translates to: FINRRGHVCLMSCKCTVLQSGRN*PRPRWP
Trigger: TGGCCAGCGAGGCCTGGGCCAGTTCCTCCCTGATTG...CAGAACTGTACATTTGCAAGACATCAGGCAGACATGTCCTCTCCTATTTATAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp ACGTCACAGGAAGGATGCAGATGGAACAGATGTTACACAGTAGCAGCAACAGGGTGTGGACAGACTTCCTaGGATGGACTTTCTGTAGGA +
Preference number: 4 (lower is better)
Translates to: TSQEGCRWNRCYTVAATGCGQTS*DGLSVG
Trigger: TCCTACAGAAAGTCCATCCCAGGAAGTCTGTCCACA...CCCTGTTGCTGCTACTGTGTAACATCTGTTCCATCTGCATCCTTCCTGTGACGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp AGGACATGTCTGCCTGATGTCTTGCAAATGTACAGTTCTGTCCACTGTCAATGTAATGGAGCCGTCCTCTaGGGAGAGGTGCCAGTTGAT +
Preference number: 4 (lower is better)
Translates to: RTCLPDVLQMYSSVHCQCNGAVL*GEVPVD
Trigger: ATCAACTGGCACCTCTCCCCAGAGGACGGCTCCATT...ACATTGACAGTGGACAGAACTGTACATTTGCAAGACATCAGGCAGACATGTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063597.14
CDS-3UTR CCA 90 bp ACGTCACAGGAAGGATGCAGATGGAACAGATGTTACACAGTAGCAGCAACAGGGGCAATGCAGGAAGTGTaGTTCTCATTGGACCAGAAG +
Preference number: 4 (lower is better)
Translates to: TSQEGCRWNRCYTVAATGAMQEV*FSLDQK
Trigger: CTTCTGGTCCAATGAGAACCACACTTCCTGCATTGC...CCCTGTTGCTGCTACTGTGTAACATCTGTTCCATCTGCATCCTTCCTGTGACGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp GTCACAGGAAGGATGCAGATGGAACAGATGTTACACAGTAGCAGCAACAGGGAGTCCGGTGGAAGCTGGTaGGTATTTTGGCCTCAAATA +
Preference number: 4 (lower is better)
Translates to: VTGRMQMEQMLHSSSNRESGGSW*VFWPQI
Trigger: TATTTGAGGCCAAAATACCCACCAGCTTCCACCGGA...CTCCCTGTTGCTGCTACTGTGTAACATCTGTTCCATCTGCATCCTTCCTGTGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp GTTCTGTCCACTGTCAATGTGATAGACAGTCCTGGTGACTATCTGGCTTTTAGATCTATTTCTGGCTGGTaGTCCCCCACCATTGGCCCT +
Preference number: 4 (lower is better)
Translates to: VLSTVNVIDSPGDYLAFRSISGW*SPTIGP
Trigger: AGGGCCAATGGTGGGGGACCACCAGCCAGAAATAGA...TCTAAAAGCCAGATAGTCACCAGGACTGTCTATCACATTGACAGTGGACAGAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR TCA 90 bp ATCCTAAGATCTAAATGTGGCATTGCCTTCAGGTTCTGGATACATCCATGCATGGCACCGCAAAGAGAGTaGGAGCGATTCCAAAGGGCT +
Preference number: 4 (lower is better)
Translates to: ILRSKCGIAFRFWIHPCMAPQRE*ERFQRA
Trigger: AGCCCTTTGGAATCGCTCTCACTCTCTTTGCGGTGC...CATGCATGGATGTATCCAGAACCTGAAGGCAATGCCACATTTAGATCTTAGGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR TCA 90 bp TTTATAAATAGGAGAGGACATGTCTGCCTGATGTCTTGCAAATGTACAGTTCTGGCAGGAACTGCAGGTTaGGTCCCCACCACTTCCGGT +
Preference number: 4 (lower is better)
Translates to: FINRRGHVCLMSCKCTVLAGTAG*VPTTSG
Trigger: ACCGGAAGTGGTGGGGACTCAACCTGCAGTTCCTGC...CAGAACTGTACATTTGCAAGACATCAGGCAGACATGTCCTCTCCTATTTATAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR TCA 90 bp CAGTTTATAATCGCCCATGGACTATTACAACAGAAGCAGTTTCTTAAGGATTACGCCGAGCGCCATGAGTaGGCCCTCATGGCACGTGAT +
Preference number: 4 (lower is better)
Translates to: QFIIAHGLLQQKQFLKDYAERHE*ALMARD
Trigger: ATCACGTGCCATGAGGGCTCACTCATGGCGCTCGGC...GTAATCCTTAAGAAACTGCTTCTGTTGTAATAGTCCATGGGCGATTATAAACTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR TCA 90 bp CAGTTTATAATCGCCCATGGACTATTACAACAGAAGCAGTTTCTTAAGGATTACCGCGGGCTGCCACTTTaGAAGCATGAGCCGCAGTGC +
Preference number: 4 (lower is better)
Translates to: QFIIAHGLLQQKQFLKDYRGLPL*KHEPQC
Trigger: GCACTGCGGCTCATGCTTTCAAAGTGGCAGCCCGCG...GTAATCCTTAAGAAACTGCTTCTGTTGTAATAGTCCATGGGCGATTATAAACTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR TCA 90 bp CTTATAGCCTTGCTTTCATCCGAGCTGGTGGTGGATGGAGCAGAGGAAAAGATTGCCATAGCATTCTTCTaGGGCTCATCAAAGCTCAGA +
Preference number: 4 (lower is better)
Translates to: LIALLSSELVVDGAEEKIAIAFF*GSSKLR
Trigger: TCTGAGCTTTGATGAGCCTCAGAAGAATGCTATGGC...AATCTTTTCCTCTGCTCCATCCACCACCAGCTCGGATGAAAGCAAGGCTATAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp GTTCTGTCCACTGTCAATGTGATAGACAGTCCTGGTGACTATCTGGCTTTTAGAGAAGAAGGGCGGGGCTaGTGTTTATCTCCTCTATGG +
Preference number: 4 (lower is better)
Translates to: VLSTVNVIDSPGDYLAFREEGRG*CLSPLW
Trigger: CCATAGAGGAGATAAACAGCAGCCCCGCCCTTCTTC...TCTAAAAGCCAGATAGTCACCAGGACTGTCTATCACATTGACAGTGGACAGAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp AGGACATGTCTGCCTGATGTCTTGCAAATGTACAGTTCTGTCCACTGTCAATGTAAAACCAGCAGGAACTaGAGGTTGAGTCCCCACCAC +
Preference number: 4 (lower is better)
Translates to: RTCLPDVLQMYSSVHCQCKTSRN*RLSPHH
Trigger: GTGGTGGGGACTCAACCTGCAGTTCCTGCTGGTTTT...ACATTGACAGTGGACAGAACTGTACATTTGCAAGACATCAGGCAGACATGTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp ATCCTAAGATCTAAATGTGGCATTGCCTTCAGGTTCTGGATACATCCATGCATGCGGCAGAGACAAACTTaGCGTAGGTGCTGGCATAGG +
Preference number: 4 (lower is better)
Translates to: ILRSKCGIAFRFWIHPCMRQRQT*RRCWHR
Trigger: CCTATGCCAGCACCTACGGCAAGTTTGTCTCTGCCG...CATGCATGGATGTATCCAGAACCTGAAGGCAATGCCACATTTAGATCTTAGGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp TGTACAGTTCTGTCCACTGTCAATGTGATAGACAGTCCTGGTGACTATCTGGCTACTTCCACCACCTGCTaGATCTCTTCCTCATCAGAG +
Preference number: 4 (lower is better)
Translates to: CTVLSTVNVIDSPGDYLATSTTC*ISSSSE
Trigger: CTCTGATGAGGAAGAGATCCAGCAGGTGGTGGAAGT...AGCCAGATAGTCACCAGGACTGTCTATCACATTGACAGTGGACAGAACTGTACA
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp AGGACATGTCTGCCTGATGTCTTGCAAATGTACAGTTCTGTCCACTGTCAATGTGAATTCTCGGAAGCCTaGAATCTGCCCAGCCTTCAG +
Preference number: 4 (lower is better)
Translates to: RTCLPDVLQMYSSVHCQCEFSEA*NLPSLQ
Trigger: CTGAAGGCTGGGCAGATTCCAGGCTTCCGAGAATTC...ACATTGACAGTGGACAGAACTGTACATTTGCAAGACATCAGGCAGACATGTCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp TTTTTAGAGGGAAGCAGGTGGGTAGCTTATAGCCTTGCTTTCATCCGAGCTGGTTTGGCAAAACCATTGTaGACAGACTTCCTGGGATGG +
Preference number: 4 (lower is better)
Translates to: FLEGSRWVAYSLAFIRAGLAKPL*TDFLGW
Trigger: CCATCCCAGGAAGTCTGTCCACAATGGTTTTGCCAA...ACCAGCTCGGATGAAAGCAAGGCTATAAGCTACCCACCTGCTTCCCTCTAAAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp TATAGCCTTGCTTTCATCCGAGCTGGTGGTGGATGGAGCAGAGGAAAAGATTTCGCGCCGTCTTGCAGGTaGCAATTAAATGTTTCTTCC +
Preference number: 4 (lower is better)
Translates to: YSLAFIRAGGGWSRGKDFAPSCR*QLNVSS
Trigger: GGAAGAAACATTTAATTGCCACCTGCAAGACGGCGC...GAAATCTTTTCCTCTGCTCCATCCACCACCAGCTCGGATGAAAGCAAGGCTATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp TTTATAAATAGGAGAGGACATGTCTGCCTGATGTCTTGCAAATGTACAGTTCTGAGTCCCGGCTGCAGTTaGAGAAGGGCACCTCTCTGG +
Preference number: 4 (lower is better)
Translates to: FINRRGHVCLMSCKCTVLSPGCS*RRAPLW
Trigger: CCAGAGAGGTGCCCTTCTCCAACTGCAGCCGGGACT...CAGAACTGTACATTTGCAAGACATCAGGCAGACATGTCCTCTCCTATTTATAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063597.14
CDS-3UTR CCA 90 bp TATAGCCTTGCTTTCATCCGAGCTGGTGGTGGATGGAGCAGAGGAAAAGATTTCAGCTGGTGGGTATTTTaGCCTCAAATACCAGGAGGA +
Preference number: 4 (lower is better)
Translates to: YSLAFIRAGGGWSRGKDFSWWVF*PQIPGG
Trigger: TCCTCCTGGTATTTGAGGCCAAAATACCCACCAGCT...GAAATCTTTTCCTCTGCTCCATCCACCACCAGCTCGGATGAAAGCAAGGCTATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp ACGTCACAGGAAGGATGCAGATGGAACAGATGTTACACAGTAGCAGCAACAGGGTTCGTTGAAGTTCTCTaGCAGCTTCCGAGACTTGAA +
Preference number: 4 (lower is better)
Translates to: TSQEGCRWNRCYTVAATGFVEVL*QLPRLE
Trigger: TTCAAGTCTCGGAAGCTGCCAGAGAACTTCAACGAA...CCCTGTTGCTGCTACTGTGTAACATCTGTTCCATCTGCATCCTTCCTGTGACGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR TCA 90 bp GTCACAGGAAGGATGCAGATGGAACAGATGTTACACAGTAGCAGCAACAGGGAGCACAGACTCTGGTCTTaGCTTCAGATCTTGATCTTT +
Preference number: 4 (lower is better)
Translates to: VTGRMQMEQMLHSSSNREHRLWS*LQILIF
Trigger: AAAGATCAAGATCTGAAGTCAAGACCAGAGTCTGTG...CTCCCTGTTGCTGCTACTGTGTAACATCTGTTCCATCTGCATCCTTCCTGTGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR TCA 90 bp GTTCTGTCCACTGTCAATGTGATAGACAGTCCTGGTGACTATCTGGCTTTTAGACTCGATGGTGTTCCGTaGAGGCTTGAAGAGGATGAT +
Preference number: 4 (lower is better)
Translates to: VLSTVNVIDSPGDYLAFRLDGVP*RLEEDD
Trigger: ATCATCCTCTTCAAGCCTTCACGGAACACCATCGAG...TCTAAAAGCCAGATAGTCACCAGGACTGTCTATCACATTGACAGTGGACAGAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp GTTCTGTCCACTGTCAATGTGATAGACAGTCCTGGTGACTATCTGGCTTTTAGACAGGTGTATATATCTTaGAGGGCGTGCGCAATGGAG +
Preference number: 4 (lower is better)
Translates to: VLSTVNVIDSPGDYLAFRQVYIS*RACAME
Trigger: CTCCATTGCGCACGCCCTGCAAGATATATACACCTG...TCTAAAAGCCAGATAGTCACCAGGACTGTCTATCACATTGACAGTGGACAGAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp ATCCTTTTTCCTGGGACTCTAAGAAAAACTCTCAACCGGGTAACCTCTCCCTCCCAATCTCCTTGGCAATaGAGGAAGTGTGGTTCTCAT +
Preference number: 4 (lower is better)
Translates to: ILFPGTLRKTLNRVTSPSQSPWQ*RKCGSH
Trigger: ATGAGAACCACACTTCCTGCATTGCCAAGGAGATTG...GGAGGGAGAGGTTACCCGGTTGAGAGTTTTTCTTAGAGTCCCAGGAAAAAGGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp CTAAGATCTAAATGTGGCATTGCCTTCAGGTTCTGGATACATCCATGCATGACGTCCTCATCAGAGTACTaGGAGATGAGCTCGCTGAAG +
Preference number: 4 (lower is better)
Translates to: LRSKCGIAFRFWIHPCMTSSSEY*EMSSLK
Trigger: CTTCAGCGAGCTCATCTCCCAGTACTCTGATGAGGA...CGTCATGCATGGATGTATCCAGAACCTGAAGGCAATGCCACATTTAGATCTTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp TGTACAGTTCTGTCCACTGTCAATGTGATAGACAGTCCTGGTGACTATCTGGCTTTGGCAAAACCATTGTaGACAGACTTCCTGGGATGG +
Preference number: 4 (lower is better)
Translates to: CTVLSTVNVIDSPGDYLALAKPL*TDFLGW
Trigger: CCATCCCAGGAAGTCTGTCCACAATGGTTTTGCCAA...AGCCAGATAGTCACCAGGACTGTCTATCACATTGACAGTGGACAGAACTGTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp GTTCTGTCCACTGTCAATGTGATAGACAGTCCTGGTGACTATCTGGCTTTTAGAACTTCCGGTGGAAGCTaGTGGGTATTTTGGCCTCAA +
Preference number: 4 (lower is better)
Translates to: VLSTVNVIDSPGDYLAFRTSGGS*WVFWPQ
Trigger: TTGAGGCCAAAATACCCACCAGCTTCCACCGGAAGT...TCTAAAAGCCAGATAGTCACCAGGACTGTCTATCACATTGACAGTGGACAGAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp ATCCTTTTTCCTGGGACTCTAAGAAAAACTCTCAACCGGGTAACCTCTCCCTCCTTCGTTGAAGTTCTCTaGCAGCTTCCGAGACTTGAA +
Preference number: 4 (lower is better)
Translates to: ILFPGTLRKTLNRVTSPSFVEVL*QLPRLE
Trigger: TTCAAGTCTCGGAAGCTGCCAGAGAACTTCAACGAA...GGAGGGAGAGGTTACCCGGTTGAGAGTTTTTCTTAGAGTCCCAGGAAAAAGGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp ATCCTAAGATCTAAATGTGGCATTGCCTTCAGGTTCTGGATACATCCATGCATGGGTGCTGGCATAGGCTaGAATGAAGGAGATCCAGAC +
Preference number: 4 (lower is better)
Translates to: ILRSKCGIAFRFWIHPCMGAGIG*NEGDPD
Trigger: GTCTGGATCTCCTTCATTCCAGCCTATGCCAGCACC...CATGCATGGATGTATCCAGAACCTGAAGGCAATGCCACATTTAGATCTTAGGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp AGTTTCTTAAGGATTACGCTATGTACATTGATATTAGTTACAGAGACAGCTCGTAGCTGGCTGCCAGGATaGCGATCACCTCCACGGCAG +
Preference number: 4 (lower is better)
Translates to: SFLRITLCTLILVTETARSWLPG*RSPPRQ
Trigger: CTGCCGTGGAGGTGATCGCCATCCTGGCAGCCAGCT...ACGAGCTGTCTCTGTAACTAATATCAATGTACATAGCGTAATCCTTAAGAAACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp TTTCTTAAGGATTACGCTATGTACATTGATATTAGTTACAGAGACAGCTCGTTGCATGAGCCGCAGTGCTaGAGCGCACCTCCTCGATGG +
Preference number: 4 (lower is better)
Translates to: FLKDYAMYIDISYRDSSLHEPQC*SAPPRW
Trigger: CCATCGAGGAGGTGCGCTCCAGCACTGCGGCTCATG...CAACGAGCTGTCTCTGTAACTAATATCAATGTACATAGCGTAATCCTTAAGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp AGTTTCTTAAGGATTACGCTATGTACATTGATATTAGTTACAGAGACAGCTCGTTGCTGTTGCTGCGGCTaGAGAGTCAGGGGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: SFLRITLCTLILVTETARCCCCG*RVRGCC
Trigger: GCAGCAGCCCCTGACTCTCCAGCCGCAGCAACAGCA...ACGAGCTGTCTCTGTAACTAATATCAATGTACATAGCGTAATCCTTAAGAAACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp ATCCTTTTTCCTGGGACTCTAAGAAAAACTCTCAACCGGGTAACCTCTCCCTCCTGGGGACATTTCATCTaGGCTTTCTATTTCTGGCTG +
Preference number: 4 (lower is better)
Translates to: ILFPGTLRKTLNRVTSPSWGHFI*AFYFWL
Trigger: CAGCCAGAAATAGAAAGCCCAGATGAAATGTCCCCA...GGAGGGAGAGGTTACCCGGTTGAGAGTTTTTCTTAGAGTCCCAGGAAAAAGGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp TTTTTAGAGGGAAGCAGGTGGGTAGCTTATAGCCTTGCTTTCATCCGAGCTGGTTGGGGACATTTCATCTaGGCTTTCTATTTCTGGCTG +
Preference number: 4 (lower is better)
Translates to: FLEGSRWVAYSLAFIRAGWGHFI*AFYFWL
Trigger: CAGCCAGAAATAGAAAGCCCAGATGAAATGTCCCCA...ACCAGCTCGGATGAAAGCAAGGCTATAAGCTACCCACCTGCTTCCCTCTAAAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR TCA 90 bp AGTTTCTTAAGGATTACGCTATGTACATTGATATTAGTTACAGAGACAGCTCGTCCTGGGGCTCCCCAATaGAGAACAGGGAGCTGGAGA +
Preference number: 4 (lower is better)
Translates to: SFLRITLCTLILVTETARPGAPQ*RTGSWR
Trigger: TCTCCAGCTCCCTGTTCTTCATTGGGGAGCCCCAGG...ACGAGCTGTCTCTGTAACTAATATCAATGTACATAGCGTAATCCTTAAGAAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR TCA 90 bp AGTTTCTTAAGGATTACGCTATGTACATTGATATTAGTTACAGAGACAGCTCGTGCAGGAACTGCAGGTTaGGTCCCCACCACTTCCGGT +
Preference number: 4 (lower is better)
Translates to: SFLRITLCTLILVTETARAGTAG*VPTTSG
Trigger: ACCGGAAGTGGTGGGGACTCAACCTGCAGTTCCTGC...ACGAGCTGTCTCTGTAACTAATATCAATGTACATAGCGTAATCCTTAAGAAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR TCA 90 bp CTAAGATCTAAATGTGGCATTGCCTTCAGGTTCTGGATACATCCATGCATGACGGCCATAGCATTCTTCTaGGGCTCATCAAAGCTCAGA +
Preference number: 4 (lower is better)
Translates to: LRSKCGIAFRFWIHPCMTAIAFF*GSSKLR
Trigger: TCTGAGCTTTGATGAGCCTCAGAAGAATGCTATGGC...CGTCATGCATGGATGTATCCAGAACCTGAAGGCAATGCCACATTTAGATCTTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR TCA 90 bp TTTATAAATAGGAGAGGACATGTCTGCCTGATGTCTTGCAAATGTACAGTTCTGTCCGAGAGGTGGACATaGCCAGAGCTGGGGACATTT +
Preference number: 4 (lower is better)
Translates to: FINRRGHVCLMSCKCTVLSERWT*PELGTF
Trigger: AAATGTCCCCAGCTCTGGTCATGTCCACCTCTCGGA...CAGAACTGTACATTTGCAAGACATCAGGCAGACATGTCCTCTCCTATTTATAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp CCTGATGTCTTGCAAATGTACAGTTCTGTCCACTGTCAATGTGATAGACAGTCCAACCTTCTTGATGTCTaGACAGGACCCGTTGGTGAA +
Preference number: 4 (lower is better)
Translates to: PDVLQMYSSVHCQCDRQSNLLDV*TGPVGE
Trigger: TTCACCAACGGGTCCTGTGCAGACATCAAGAAGGTT...GGACTGTCTATCACATTGACAGTGGACAGAACTGTACATTTGCAAGACATCAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp TTTTTAGAGGGAAGCAGGTGGGTAGCTTATAGCCTTGCTTTCATCCGAGCTGGTATGCAGATGACAATCTaGATGAAGGTGCAGAGGAAA +
Preference number: 4 (lower is better)
Translates to: FLEGSRWVAYSLAFIRAGMQMTI*MKVQRK
Trigger: TTTCCTCTGCACCTTCATGCAGATTGTCATCTGCAT...ACCAGCTCGGATGAAAGCAAGGCTATAAGCTACCCACCTGCTTCCCTCTAAAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp CAGTTTATAATCGCCCATGGACTATTACAACAGAAGCAGTTTCTTAAGGATTACGGTTGCTGTTGCTTCTaGCTCTCCGGCTGTGGGAAC +
Preference number: 4 (lower is better)
Translates to: QFIIAHGLLQQKQFLKDYGCCCF*LSGCGN
Trigger: GTTCCCACAGCCGGAGAGGCAGAAGCAACAGCAACC...GTAATCCTTAAGAAACTGCTTCTGTTGTAATAGTCCATGGGCGATTATAAACTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp TTTATAAATAGGAGAGGACATGTCTGCCTGATGTCTTGCAAATGTACAGTTCTGTGGCCTCCAGAGCCTTaGAGACGGTGTTACAGGTGT +
Preference number: 4 (lower is better)
Translates to: FINRRGHVCLMSCKCTVLWPPEP*RRCYRC
Trigger: ACACCTGTAACACCGTCTCCAAGGCTCTGGAGGCCA...CAGAACTGTACATTTGCAAGACATCAGGCAGACATGTCCTCTCCTATTTATAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp ATCCTTTTTCCTGGGACTCTAAGAAAAACTCTCAACCGGGTAACCTCTCCCTCCACAGACTTCCTGGGATaGACTTTCTGTAGGAATTCT +
Preference number: 4 (lower is better)
Translates to: ILFPGTLRKTLNRVTSPSTDFLG*TFCRNS
Trigger: AGAATTCCTACAGAAAGTCCATCCCAGGAAGTCTGT...GGAGGGAGAGGTTACCCGGTTGAGAGTTTTTCTTAGAGTCCCAGGAAAAAGGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp CTTATAGCCTTGCTTTCATCCGAGCTGGTGGTGGATGGAGCAGAGGAAAAGATTCTTCCCAAAACTCTTTaGCAAAACCATTGTGGACAG +
Preference number: 4 (lower is better)
Translates to: LIALLSSELVVDGAEEKILPKTL*QNHCGQ
Trigger: CTGTCCACAATGGTTTTGCCAAAGAGTTTTGGGAAG...AATCTTTTCCTCTGCTCCATCCACCACCAGCTCGGATGAAAGCAAGGCTATAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp AGGACATGTCTGCCTGATGTCTTGCAAATGTACAGTTCTGTCCACTGTCAATGTGCAATGCAGGAAGTGTaGTTCTCATTGGACCAGAAG +
Preference number: 4 (lower is better)
Translates to: RTCLPDVLQMYSSVHCQCAMQEV*FSLDQK
Trigger: CTTCTGGTCCAATGAGAACCACACTTCCTGCATTGC...ACATTGACAGTGGACAGAACTGTACATTTGCAAGACATCAGGCAGACATGTCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp TTTTTAGAGGGAAGCAGGTGGGTAGCTTATAGCCTTGCTTTCATCCGAGCTGGTATCTTGATCTTTGGCTaGTACTCCAAAATGGATAGG +
Preference number: 4 (lower is better)
Translates to: FLEGSRWVAYSLAFIRAGILIFG*YSKMDR
Trigger: CCTATCCATTTTGGAGTAGCAGCCAAAGATCAAGAT...ACCAGCTCGGATGAAAGCAAGGCTATAAGCTACCCACCTGCTTCCCTCTAAAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp AGGACATGTCTGCCTGATGTCTTGCAAATGTACAGTTCTGTCCACTGTCAATGTCAATCTCCTTGGCAATaGAGGAAGTGTGGTTCTCAT +
Preference number: 4 (lower is better)
Translates to: RTCLPDVLQMYSSVHCQCQSPWQ*RKCGSH
Trigger: ATGAGAACCACACTTCCTGCATTGCCAAGGAGATTG...ACATTGACAGTGGACAGAACTGTACATTTGCAAGACATCAGGCAGACATGTCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp CTAAGATCTAAATGTGGCATTGCCTTCAGGTTCTGGATACATCCATGCATGACGGCTGCTACTCCAAAATaGATAGGAAAGAGACCTCCT +
Preference number: 4 (lower is better)
Translates to: LRSKCGIAFRFWIHPCMTAATPK*IGKRPP
Trigger: AGGAGGTCTCTTTCCTATCCATTTTGGAGTAGCAGC...CGTCATGCATGGATGTATCCAGAACCTGAAGGCAATGCCACATTTAGATCTTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp TATAGCCTTGCTTTCATCCGAGCTGGTGGTGGATGGAGCAGAGGAAAAGATTTCTCAGATCTTGATCTTTaGCTGCTACTCCAAAATGGA +
Preference number: 4 (lower is better)
Translates to: YSLAFIRAGGGWSRGKDFSDLDL*LLLQNG
Trigger: TCCATTTTGGAGTAGCAGCCAAAGATCAAGATCTGA...GAAATCTTTTCCTCTGCTCCATCCACCACCAGCTCGGATGAAAGCAAGGCTATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp ACGTCACAGGAAGGATGCAGATGGAACAGATGTTACACAGTAGCAGCAACAGGGTGTTTATCTCCTCTATaGCAAAGATCATGGCTTGTA +
Preference number: 4 (lower is better)
Translates to: TSQEGCRWNRCYTVAATGCLSPL*QRSWLV
Trigger: TACAAGCCATGATCTTTGCCATAGAGGAGATAAACA...CCCTGTTGCTGCTACTGTGTAACATCTGTTCCATCTGCATCCTTCCTGTGACGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp CAGTTTATAATCGCCCATGGACTATTACAACAGAAGCAGTTTCTTAAGGATTACAAAGTCCCAGCAGGTTaGCTACCGCTGTGGAGACAC +
Preference number: 4 (lower is better)
Translates to: QFIIAHGLLQQKQFLKDYKVPAG*LPLWRH
Trigger: GTGTCTCCACAGCGGTAGCCAACCTGCTGGGACTTT...GTAATCCTTAAGAAACTGCTTCTGTTGTAATAGTCCATGGGCGATTATAAACTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp ATCCTAAGATCTAAATGTGGCATTGCCTTCAGGTTCTGGATACATCCATGCATGGCGCCGTCTTGCAGGTaGCAATTAAATGTTTCTTCC +
Preference number: 4 (lower is better)
Translates to: ILRSKCGIAFRFWIHPCMAPSCR*QLNVSS
Trigger: GGAAGAAACATTTAATTGCCACCTGCAAGACGGCGC...CATGCATGGATGTATCCAGAACCTGAAGGCAATGCCACATTTAGATCTTAGGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp ATCCTAAGATCTAAATGTGGCATTGCCTTCAGGTTCTGGATACATCCATGCATGGGAACTCAATCTCCTTaGCAATGCAGGAAGTGTGGT +
Preference number: 4 (lower is better)
Translates to: ILRSKCGIAFRFWIHPCMGTQSP*QCRKCG
Trigger: ACCACACTTCCTGCATTGCCAAGGAGATTGAGTTCC...CATGCATGGATGTATCCAGAACCTGAAGGCAATGCCACATTTAGATCTTAGGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp ATCCTAAGATCTAAATGTGGCATTGCCTTCAGGTTCTGGATACATCCATGCATGTCCGGTGGAAGCTGGTaGGTATTTTGGCCTCAAATA +
Preference number: 4 (lower is better)
Translates to: ILRSKCGIAFRFWIHPCMSGGSW*VFWPQI
Trigger: TATTTGAGGCCAAAATACCCACCAGCTTCCACCGGA...CATGCATGGATGTATCCAGAACCTGAAGGCAATGCCACATTTAGATCTTAGGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp GTTCTGTCCACTGTCAATGTGATAGACAGTCCTGGTGACTATCTGGCTTTTAGAATGAGTGAGCCCTCATaGCACGTGATGAAGATGATT +
Preference number: 4 (lower is better)
Translates to: VLSTVNVIDSPGDYLAFRMSEPS*HVMKMI
Trigger: AATCATCTTCATCACGTGCCATGAGGGCTCACTCAT...TCTAAAAGCCAGATAGTCACCAGGACTGTCTATCACATTGACAGTGGACAGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp AGTTTCTTAAGGATTACGCTATGTACATTGATATTAGTTACAGAGACAGCTCGTTGCTGCTGTTCTTGCTaGGTCAGGGCCAGTGGTTGC +
Preference number: 4 (lower is better)
Translates to: SFLRITLCTLILVTETARCCCSC*VRASGC
Trigger: GCAACCACTGGCCCTGACCCAGCAAGAACAGCAGCA...ACGAGCTGTCTCTGTAACTAATATCAATGTACATAGCGTAATCCTTAAGAAACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR TCA 90 bp ATCCTAAGATCTAAATGTGGCATTGCCTTCAGGTTCTGGATACATCCATGCATGCTTGACTTCAGATCTTaGTCTTTGGCTGCTACTCCA +
Preference number: 4 (lower is better)
Translates to: ILRSKCGIAFRFWIHPCMLDFRS*SLAATP
Trigger: TGGAGTAGCAGCCAAAGATCAAGATCTGAAGTCAAG...CATGCATGGATGTATCCAGAACCTGAAGGCAATGCCACATTTAGATCTTAGGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp CAGTTTATAATCGCCCATGGACTATTACAACAGAAGCAGTTTCTTAAGGATTACATAGTCGTCGTCGGCTaGAATTGTGCCCACCCAGTT +
Preference number: 4 (lower is better)
Translates to: QFIIAHGLLQQKQFLKDYIVVVG*NCAHPV
Trigger: AACTGGGTGGGCACAATTGCAGCCGACGACGACTAT...GTAATCCTTAAGAAACTGCTTCTGTTGTAATAGTCCATGGGCGATTATAAACTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp TATAGCCTTGCTTTCATCCGAGCTGGTGGTGGATGGAGCAGAGGAAAAGATTTCTGTTTATCTCCTCTATaGCAAAGATCATGGCTTGTA +
Preference number: 4 (lower is better)
Translates to: YSLAFIRAGGGWSRGKDFCLSPL*QRSWLV
Trigger: TACAAGCCATGATCTTTGCCATAGAGGAGATAAACA...GAAATCTTTTCCTCTGCTCCATCCACCACCAGCTCGGATGAAAGCAAGGCTATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp CCTGATGTCTTGCAAATGTACAGTTCTGTCCACTGTCAATGTGATAGACAGTCCAGGAAGGACTTGAACTaGTTCTTATTGCTGAGAAGC +
Preference number: 4 (lower is better)
Translates to: PDVLQMYSSVHCQCDRQSRKDLN*FLLLRS
Trigger: GCTTCTCAGCAATAAGAACCAGTTCAAGTCCTTCCT...GGACTGTCTATCACATTGACAGTGGACAGAACTGTACATTTGCAAGACATCAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp TTTATAAATAGGAGAGGACATGTCTGCCTGATGTCTTGCAAATGTACAGTTCTGACTTCCACCACCTGCTaGATCTCTTCCTCATCAGAG +
Preference number: 4 (lower is better)
Translates to: FINRRGHVCLMSCKCTVLTSTTC*ISSSSE
Trigger: CTCTGATGAGGAAGAGATCCAGCAGGTGGTGGAAGT...CAGAACTGTACATTTGCAAGACATCAGGCAGACATGTCCTCTCCTATTTATAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp CTAAGATCTAAATGTGGCATTGCCTTCAGGTTCTGGATACATCCATGCATGACGCTTCCCAAAACTCTTTaGCAAAACCATTGTGGACAG +
Preference number: 4 (lower is better)
Translates to: LRSKCGIAFRFWIHPCMTLPKTL*QNHCGQ
Trigger: CTGTCCACAATGGTTTTGCCAAAGAGTTTTGGGAAG...CGTCATGCATGGATGTATCCAGAACCTGAAGGCAATGCCACATTTAGATCTTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp TTTATAAATAGGAGAGGACATGTCTGCCTGATGTCTTGCAAATGTACAGTTCTGAAGTGTGGTTCTCATTaGACCAGAAGTCATCCGGGC +
Preference number: 4 (lower is better)
Translates to: FINRRGHVCLMSCKCTVLKCGSH*TRSHPG
Trigger: GCCCGGATGACTTCTGGTCCAATGAGAACCACACTT...CAGAACTGTACATTTGCAAGACATCAGGCAGACATGTCCTCTCCTATTTATAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp AGTTTCTTAAGGATTACGCTATGTACATTGATATTAGTTACAGAGACAGCTCGTCCCCACCACTTCCGGTaGAAGCTGGTGGGTATTTTG +
Preference number: 4 (lower is better)
Translates to: SFLRITLCTLILVTETARPHHFR*KLVGIL
Trigger: CAAAATACCCACCAGCTTCCACCGGAAGTGGTGGGG...ACGAGCTGTCTCTGTAACTAATATCAATGTACATAGCGTAATCCTTAAGAAACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp GTTCTGTCCACTGTCAATGTGATAGACAGTCCTGGTGACTATCTGGCTTTTAGAATCTTGATCTTTGGCTaGTACTCCAAAATGGATAGG +
Preference number: 4 (lower is better)
Translates to: VLSTVNVIDSPGDYLAFRILIFG*YSKMDR
Trigger: CCTATCCATTTTGGAGTAGCAGCCAAAGATCAAGAT...TCTAAAAGCCAGATAGTCACCAGGACTGTCTATCACATTGACAGTGGACAGAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp TTTATAAATAGGAGAGGACATGTCTGCCTGATGTCTTGCAAATGTACAGTTCTGATCACTTCCACCACCTaGTGGATCTCTTCCTCATCA +
Preference number: 4 (lower is better)
Translates to: FINRRGHVCLMSCKCTVLITSTT*WISSSS
Trigger: TGATGAGGAAGAGATCCAGCAGGTGGTGGAAGTGAT...CAGAACTGTACATTTGCAAGACATCAGGCAGACATGTCCTCTCCTATTTATAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp CCTGATGTCTTGCAAATGTACAGTTCTGTCCACTGTCAATGTGATAGACAGTCCGAATCGATTTTGTTCTaGGCAACAAAACTCAAGGTG +
Preference number: 4 (lower is better)
Translates to: PDVLQMYSSVHCQCDRQSESILF*ATKLKV
Trigger: CACCTTGAGTTTTGTTGCCCAGAACAAAATCGATTC...GGACTGTCTATCACATTGACAGTGGACAGAACTGTACATTTGCAAGACATCAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp CAGTTTATAATCGCCCATGGACTATTACAACAGAAGCAGTTTCTTAAGGATTACTCCTCATCAGAGTACTaGGAGATGAGCTCGCTGAAG +
Preference number: 4 (lower is better)
Translates to: QFIIAHGLLQQKQFLKDYSSSEY*EMSSLK
Trigger: CTTCAGCGAGCTCATCTCCCAGTACTCTGATGAGGA...GTAATCCTTAAGAAACTGCTTCTGTTGTAATAGTCCATGGGCGATTATAAACTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp TTTCTTAAGGATTACGCTATGTACATTGATATTAGTTACAGAGACAGCTCGTTGGAATTCTCGGAAGCCTaGAATCTGCCCAGCCTTCAG +
Preference number: 4 (lower is better)
Translates to: FLKDYAMYIDISYRDSSLEFSEA*NLPSLQ
Trigger: CTGAAGGCTGGGCAGATTCCAGGCTTCCGAGAATTC...CAACGAGCTGTCTCTGTAACTAATATCAATGTACATAGCGTAATCCTTAAGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp TTTCTTAAGGATTACGCTATGTACATTGATATTAGTTACAGAGACAGCTCGTTGGGACATGACCAGAGCTaGGGACATTTCATCTGGGCT +
Preference number: 4 (lower is better)
Translates to: FLKDYAMYIDISYRDSSLGHDQS*GHFIWA
Trigger: AGCCCAGATGAAATGTCCCCAGCTCTGGTCATGTCC...CAACGAGCTGTCTCTGTAACTAATATCAATGTACATAGCGTAATCCTTAAGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR TCA 90 bp AGTTTCTTAAGGATTACGCTATGTACATTGATATTAGTTACAGAGACAGCTCGTGCAGCTTCCGAGACTTaGAGGCAAAGAAGAAGCAGA +
Preference number: 4 (lower is better)
Translates to: SFLRITLCTLILVTETARAASET*RQRRSR
Trigger: TCTGCTTCTTCTTTGCCTTCAAGTCTCGGAAGCTGC...ACGAGCTGTCTCTGTAACTAATATCAATGTACATAGCGTAATCCTTAAGAAACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp CAGTTTATAATCGCCCATGGACTATTACAACAGAAGCAGTTTCTTAAGGATTACAACCTTCTTGATGTCTaGACAGGACCCGTTGGTGAA +
Preference number: 4 (lower is better)
Translates to: QFIIAHGLLQQKQFLKDYNLLDV*TGPVGE
Trigger: TTCACCAACGGGTCCTGTGCAGACATCAAGAAGGTT...GTAATCCTTAAGAAACTGCTTCTGTTGTAATAGTCCATGGGCGATTATAAACTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp AGTTTCTTAAGGATTACGCTATGTACATTGATATTAGTTACAGAGACAGCTCGTTGTTCAAAGTGTCATTaGTCTTCTGGGCCTCCAGGG +
Preference number: 4 (lower is better)
Translates to: SFLRITLCTLILVTETARCSKCH*SSGPPG
Trigger: CCCTGGAGGCCCAGAAGAGCAATGACACTTTGAACA...ACGAGCTGTCTCTGTAACTAATATCAATGTACATAGCGTAATCCTTAAGAAACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp TTTCTTAAGGATTACGCTATGTACATTGATATTAGTTACAGAGACAGCTCGTTGATCACTTCCACCACCTaGTGGATCTCTTCCTCATCA +
Preference number: 4 (lower is better)
Translates to: FLKDYAMYIDISYRDSSLITSTT*WISSSS
Trigger: TGATGAGGAAGAGATCCAGCAGGTGGTGGAAGTGAT...CAACGAGCTGTCTCTGTAACTAATATCAATGTACATAGCGTAATCCTTAAGAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp AGTTTCTTAAGGATTACGCTATGTACATTGATATTAGTTACAGAGACAGCTCGTGGAACTCAATCTCCTTaGCAATGCAGGAAGTGTGGT +
Preference number: 4 (lower is better)
Translates to: SFLRITLCTLILVTETARGTQSP*QCRKCG
Trigger: ACCACACTTCCTGCATTGCCAAGGAGATTGAGTTCC...ACGAGCTGTCTCTGTAACTAATATCAATGTACATAGCGTAATCCTTAAGAAACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp AGTTTCTTAAGGATTACGCTATGTACATTGATATTAGTTACAGAGACAGCTCGTAGCTGGTGGGTATTTTaGCCTCAAATACCAGGAGGA +
Preference number: 4 (lower is better)
Translates to: SFLRITLCTLILVTETARSWWVF*PQIPGG
Trigger: TCCTCCTGGTATTTGAGGCCAAAATACCCACCAGCT...ACGAGCTGTCTCTGTAACTAATATCAATGTACATAGCGTAATCCTTAAGAAACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp AGTTTCTTAAGGATTACGCTATGTACATTGATATTAGTTACAGAGACAGCTCGTGCTGCTACTCCAAAATaGATAGGAAAGAGACCTCCT +
Preference number: 4 (lower is better)
Translates to: SFLRITLCTLILVTETARAATPK*IGKRPP
Trigger: AGGAGGTCTCTTTCCTATCCATTTTGGAGTAGCAGC...ACGAGCTGTCTCTGTAACTAATATCAATGTACATAGCGTAATCCTTAAGAAACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp CAGTTTATAATCGCCCATGGACTATTACAACAGAAGCAGTTTCTTAAGGATTACAGGAAGGACTTGAACTaGTTCTTATTGCTGAGAAGC +
Preference number: 4 (lower is better)
Translates to: QFIIAHGLLQQKQFLKDYRKDLN*FLLLRS
Trigger: GCTTCTCAGCAATAAGAACCAGTTCAAGTCCTTCCT...GTAATCCTTAAGAAACTGCTTCTGTTGTAATAGTCCATGGGCGATTATAAACTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp CAGTTTATAATCGCCCATGGACTATTACAACAGAAGCAGTTTCTTAAGGATTACACAGACTTCCTGGGATaGACTTTCTGTAGGAATTCT +
Preference number: 4 (lower is better)
Translates to: QFIIAHGLLQQKQFLKDYTDFLG*TFCRNS
Trigger: AGAATTCCTACAGAAAGTCCATCCCAGGAAGTCTGT...GTAATCCTTAAGAAACTGCTTCTGTTGTAATAGTCCATGGGCGATTATAAACTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp CAGTTTATAATCGCCCATGGACTATTACAACAGAAGCAGTTTCTTAAGGATTACGTCTTTCTCCCTTCTTaGCATACACATTGTAGTACC +
Preference number: 4 (lower is better)
Translates to: QFIIAHGLLQQKQFLKDYVFLPS*HTHCST
Trigger: GGTACTACAATGTGTATGCCAAGAAGGGAGAAAGAC...GTAATCCTTAAGAAACTGCTTCTGTTGTAATAGTCCATGGGCGATTATAAACTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063597.14
3UTR CAA 72 bp AACAGAAGCAGTTTCTTAAGGATTACGCTATGTACATaGATATTAGTTACAGAGACAGCTCGTTGGGTTGAG +
Preference number: 4 (lower is better)
Translates to: NRSSFLRITLCT*ILVTETARWVE
Trigger: CTCAACCCAACGAGCTGTCTCTGTAACTAATATCAATGTACATAGCGTAATCCTTAAGAAACTGCTTCTGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR GCA 90 bp TTTCTTAAGGATTACGCTATGTACATTGATATTAGTTACAGAGACAGCTCGTTGATGCAGATGACAATCTaGATGAAGGTGCAGAGGAAA +
Preference number: 4 (lower is better)
Translates to: FLKDYAMYIDISYRDSSLMQMTI*MKVQRK
Trigger: TTTCCTCTGCACCTTCATGCAGATTGTCATCTGCAT...CAACGAGCTGTCTCTGTAACTAATATCAATGTACATAGCGTAATCCTTAAGAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp TTTCTTAAGGATTACGCTATGTACATTGATATTAGTTACAGAGACAGCTCGTTGCTATGGCAAAGATCATaGCTTGTAACCATCGGAATC +
Preference number: 4 (lower is better)
Translates to: FLKDYAMYIDISYRDSSLLWQRS*LVTIGI
Trigger: GATTCCGATGGTTACAAGCCATGATCTTTGCCATAG...CAACGAGCTGTCTCTGTAACTAATATCAATGTACATAGCGTAATCCTTAAGAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp AGTTTCTTAAGGATTACGCTATGTACATTGATATTAGTTACAGAGACAGCTCGTCTATGGCAAAGATCATaGCTTGTAACCATCGGAATC +
Preference number: 4 (lower is better)
Translates to: SFLRITLCTLILVTETARLWQRS*LVTIGI
Trigger: GATTCCGATGGTTACAAGCCATGATCTTTGCCATAG...ACGAGCTGTCTCTGTAACTAATATCAATGTACATAGCGTAATCCTTAAGAAACT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CCA 90 bp AGTTTCTTAAGGATTACGCTATGTACATTGATATTAGTTACAGAGACAGCTCGTGAATCGATTTTGTTCTaGGCAACAAAACTCAAGGTG +
Preference number: 4 (lower is better)
Translates to: SFLRITLCTLILVTETARESILF*ATKLKV
Trigger: CACCTTGAGTTTTGTTGCCCAGAACAAAATCGATTC...ACGAGCTGTCTCTGTAACTAATATCAATGTACATAGCGTAATCCTTAAGAAACT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS TCA 90 bp TCCGGGAGATGTTGGGGCGGCGTAGAGTGGCGCGGGCTGCCACTTTaGAAGCATGAGCCGCAGTGCTGGAGCGCACCTCCTCGATGGTGT +
Preference number: 5 (lower is better)
Translates to: SGRCWGGVEWRGLPL*KHEPQCWSAPPRWC
Trigger: ACACCATCGAGGAGGTGCGCTCCAGCACTGCGGCTCATGCTTTCAAAGTGGCAGCCCGCGCCACTCTACGCCGCCCCAACATCTCCCGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CCA 90 bp AAGCTGATGCCGAAGGCGGGCTGTCGCAGGCGGCAGGTCCAGTCCTaGGGCTCCCCAATGAAGAACAGGGAGCTGGAGAAGCAGCAGAGG +
Preference number: 5 (lower is better)
Translates to: KLMPKAGCRRRQVQS*GSPMKNRELEKQQR
Trigger: CCTCTGCTGCTTCTCCAGCTCCCTGTTCTTCATTGGGGAGCCCCAGGACTGGACCTGCCGCCTGCGACAGCCCGCCTTCGGCATCAGCTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS TCA 90 bp ATGTTGGGGCGGCGTAGAGTGGCGCGGGCTGCCACTTTGAAAGCATaGGCCGCAGTGCTGGAGCGCACCTCCTCGATGGTGTTCCGTGAA +
Preference number: 5 (lower is better)
Translates to: MLGRRRVARAATLKA*AAVLERTSSMVFRE
Trigger: TTCACGGAACACCATCGAGGAGGTGCGCTCCAGCACTGCGGCTCATGCTTTCAAAGTGGCAGCCCGCGCCACTCTACGCCGCCCCAACAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS GCA 90 bp TGTGGCTGTTGCTGTTGCTGCGGCTGGAGAGTCAGGGGCTGCTGCTaGTGTTCTTGCTGGGTCAGGGCCAGTGGTTGCTGTTGCTTCTGC +
Preference number: 5 (lower is better)
Translates to: CGCCCCCGWRVRGCC*CSCWVRASGCCCFC
Trigger: GCAGAAGCAACAGCAACCACTGGCCCTGACCCAGCAAGAACAGCAGCAGCAGCCCCTGACTCTCCAGCCGCAGCAACAGCAACAGCCACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CCA 90 bp AGGAGGCGTAGCTCACCTGGGGGATATAGAAAAGTCCCAGCAGGTTaGCTACCGCTGTGGAGACACCGGAGCCGGTTGCTCCCACCACTG +
Preference number: 5 (lower is better)
Translates to: RRRSSPGGYRKVPAG*LPLWRHRSRLLPPL
Trigger: CAGTGGTGGGAGCAACCGGCTCCGGTGTCTCCACAGCGGTAGCCAACCTGCTGGGACTTTTCTATATCCCCCAGGTGAGCTACGCCTCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS TCA 90 bp CGCTGTGGAGACACCGGAGCCGGTTGCTCCCACCACTGCGATGGTTaGAGGGATGTGCTCGGAGCAGTTGCAGAACTCATCCAGGTTCAG +
Preference number: 5 (lower is better)
Translates to: RCGDTGAGCSHHCDG*RDVLGAVAELIQVQ
Trigger: CTGAACCTGGATGAGTTCTGCAACTGCTCCGAGCACATCCCTTCAACCATCGCAGTGGTGGGAGCAACCGGCTCCGGTGTCTCCACAGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS TCA 90 bp CAGGACACTCCACACACTCAAAACAGCAGGTGGGCTCTCCCTCAATaGTGCCCTTCCTGGTCCCTGCCTGACAGTCCCGGCTGCAGTTGG +
Preference number: 5 (lower is better)
Translates to: QDTPHTQNSRWALPQ*CPSWSLPDSPGCSW
Trigger: CCAACTGCAGCCGGGACTGTCAGGCAGGGACCAGGAAGGGCATCATTGAGGGAGAGCCCACCTGCTGTTTTGAGTGTGTGGAGTGTCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS TCA 90 bp CTCGATTGGTCTTCACCAAGATGCACGAGATACAAAGCACGAAGCTaGTGCCGAAGGCGGGCTGTCGCAGGCGGCAGGTCCAGTCCTGGG +
Preference number: 5 (lower is better)
Translates to: LDWSSPRCTRYKARS*CRRRAVAGGRSSPG
Trigger: CCCAGGACTGGACCTGCCGCCTGCGACAGCCCGCCTTCGGCATCAGCTTCGTGCTTTGTATCTCGTGCATCTTGGTGAAGACCAATCGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CCA 90 bp CTACCGCTGTGGAGACACCGGAGCCGGTTGCTCCCACCACTGCGATaGTTGAAGGGATGTGCTCGGAGCAGTTGCAGAACTCATCCAGGT +
Preference number: 5 (lower is better)
Translates to: LPLWRHRSRLLPPLR*LKGCARSSCRTHPG
Trigger: ACCTGGATGAGTTCTGCAACTGCTCCGAGCACATCCCTTCAACCATCGCAGTGGTGGGAGCAACCGGCTCCGGTGTCTCCACAGCGGTAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CCA 90 bp CTGGGTCAGGGCCAGTGGTTGCTGTTGCTTCTGCCTCTCCGGCTGTaGGAACCGGTCTTCGCTGTTGCTTTTGCTGCTGATGGAGGAGGA +
Preference number: 5 (lower is better)
Translates to: LGQGQWLLLLLPLRL*EPVFAVAFAADGGG
Trigger: TCCTCCTCCATCAGCAGCAAAAGCAACAGCGAAGACCGGTTCCCACAGCCGGAGAGGCAGAAGCAACAGCAACCACTGGCCCTGACCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS TCA 90 bp AGCCAGGAGGCAGGTGTAGCCGATCAGGGAGCCGAGCGCCATGAGTaGGCCCTCATGGCACGTGATGAAGATGATTTCGTCTTCCAGCTC +
Preference number: 5 (lower is better)
Translates to: SQEAGVADQGAERHE*ALMARDEDDFVFQL
Trigger: GAGCTGGAAGACGAAATCATCTTCATCACGTGCCATGAGGGCTCACTCATGGCGCTCGGCTCCCTGATCGGCTACACCTGCCTCCTGGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS GCA 90 bp CAATGCAGATGTCCCTCTCCTCGGCTTCCTCTCGGAACTTCTCAATaGCAGGCCTGCCATAGTCGTCGTCGGCTGCAATTGTGCCCACCC +
Preference number: 5 (lower is better)
Translates to: QCRCPSPRLPLGTSQ*QACHSRRRLQLCPP
Trigger: GGGTGGGCACAATTGCAGCCGACGACGACTATGGCAGGCCTGGCATTGAGAAGTTCCGAGAGGAAGCCGAGGAGAGGGACATCTGCATTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS GCA 90 bp ATGACCTTCTGTTTGCATCTCGGCTGCTGTGGCTGTTGCTGTTGCTaGGGCTGGAGAGTCAGGGGCTGCTGCTGCTGTTCTTGCTGGGTC +
Preference number: 5 (lower is better)
Translates to: MTFCLHLGCCGCCCC*GWRVRGCCCCSCWV
Trigger: GACCCAGCAAGAACAGCAGCAGCAGCCCCTGACTCTCCAGCCGCAGCAACAGCAACAGCCACAGCAGCCGAGATGCAAACAGAAGGTCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CCA 90 bp TCACCTGGGGGATATAGAAAAGTCCCAGCAGGTTGGCTACCGCTGTaGAGACACCGGAGCCGGTTGCTCCCACCACTGCGATGGTTGAAG +
Preference number: 5 (lower is better)
Translates to: SPGGYRKVPAGWLPL*RHRSRLLPPLRWLK
Trigger: CTTCAACCATCGCAGTGGTGGGAGCAACCGGCTCCGGTGTCTCCACAGCGGTAGCCAACCTGCTGGGACTTTTCTATATCCCCCAGGTGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS GCA 90 bp AAGATGACCTTCTGTTTGCATCTCGGCTGCTGTGGCTGTTGCTGTTaGTGCGGCTGGAGAGTCAGGGGCTGCTGCTGCTGTTCTTGCTGG +
Preference number: 5 (lower is better)
Translates to: KMTFCLHLGCCGCCC*CGWRVRGCCCCSCW
Trigger: CCAGCAAGAACAGCAGCAGCAGCCCCTGACTCTCCAGCCGCAGCAACAGCAACAGCCACAGCAGCCGAGATGCAAACAGAAGGTCATCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CCA 90 bp ATCTGCCCAGCCTTCAGACCGAACCCAATGGTACCCCCGACTACATaGAAGTACTCAGGCATAGCAATCAGGGAGGAACTGGCCCAGGCC +
Preference number: 5 (lower is better)
Translates to: ICPAFRPNPMVPPTT*KYSGIAIREELAQA
Trigger: GGCCTGGGCCAGTTCCTCCCTGATTGCTATGCCTGAGTACTTCCATGTAGTCGGGGGTACCATTGGGTTCGGTCTGAAGGCTGGGCAGAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CCA 90 bp AGGGGAAGCAGGGCCTGGTGTCTGTTCAAAGTGTCATTGCTCTTCTaGGCCTCCAGGGAGTTCTGGCGCATGGAGTTCCTGTGGGCCATA +
Preference number: 5 (lower is better)
Translates to: RGSRAWCLFKVSLLF*ASREFWRMEFLWAI
Trigger: TATGGCCCACAGGAACTCCATGCGCCAGAACTCCCTGGAGGCCCAGAAGAGCAATGACACTTTGAACAGACACCAGGCCCTGCTTCCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS TCA 90 bp CGGAAGGCAGTGGAGCTATTGAGTAACCTGTTGCCGCCTTCCTCGTaGCTTCTCACGAAGGTGTCCACGGGTAAAGGTCCTTTTGCGCCG +
Preference number: 5 (lower is better)
Translates to: RKAVELLSNLLPPSS*LLTKVSTGKGPFAP
Trigger: CGGCGCAAAAGGACCTTTACCCGTGGACACCTTCGTGAGAAGTCACGAGGAAGGCGGCAACAGGTTACTCAATAGCTCCACTGCCTTCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS TCA 90 bp GGTCACCGCACTCATCGAAGGTCACCTGCTCCCCCATGTTGTTGGTaGAATTCAGGTGCCGTAGGTGTTTCAGGACCTGCCAGGCCTCAA +
Preference number: 5 (lower is better)
Translates to: GHRTHRRSPAPPCCW*NSGAVGVSGPARPQ
Trigger: TTGAGGCCTGGCAGGTCCTGAAACACCTACGGCACCTGAATTTCACCAACAACATGGGGGAGCAGGTGACCTTCGATGAGTGCGGTGACC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000172826.2
CDS CCA 90 bp GTCATTTCTGAGTCCGCCTCTGCACACTGTAGGGGAAGCAGGGCCTaGTGTCTGTTCAAAGTGTCATTGCTCTTCTGGGCCTCCAGGGAG +
Preference number: 5 (lower is better)
Translates to: VISESASAHCRGSRA*CLFKVSLLFWASRE
Trigger: CTCCCTGGAGGCCCAGAAGAGCAATGACACTTTGAACAGACACCAGGCCCTGCTTCCCCTACAGTGTGCAGAGGCGGACTCAGAAATGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS-3UTR CAA 90 bp GTCACAGGAAGGATGCAGATGGAACAGATGTTACACAGTAGCAGCAACAGGGAGAGACACCGGAGCCGGTaGCTCCCACCACTGCGATGG +
Preference number: 5 (lower is better)
Translates to: VTGRMQMEQMLHSSSNRERHRSR*LPPLRW
Trigger: CCATCGCAGTGGTGGGAGCAACCGGCTCCGGTGTCT...CTCCCTGTTGCTGCTACTGTGTAACATCTGTTCCATCTGCATCCTTCCTGTGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CAA 90 bp ACGTCACAGGAAGGATGCAGATGGAACAGATGTTACACAGTAGCAGCAACAGGGAGACACCGGAGCCGGTaGCTCCCACCACTGCGATGG +
Preference number: 5 (lower is better)
Translates to: TSQEGCRWNRCYTVAATGRHRSR*LPPLRW
Trigger: CCATCGCAGTGGTGGGAGCAACCGGCTCCGGTGTCT...CCCTGTTGCTGCTACTGTGTAACATCTGTTCCATCTGCATCCTTCCTGTGACGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS TCA 90 bp CCAGCACAAAGGCGGTCAGGAAAATGCCCAGCACCGCAAAGAGAGTaGGAGCGATTCCAAAGGGCTCAGTCCACGCCAGGAACTCAATCT +
Preference number: 5 (lower is better)
Translates to: PAQRRSGKCPAPQRE*ERFQRAQSTPGTQS
Trigger: AGATTGAGTTCCTGGCGTGGACTGAGCCCTTTGGAATCGCTCTCACTCTCTTTGCGGTGCTGGGCATTTTCCTGACCGCCTTTGTGCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS GCA 90 bp ACACCGGAGCCGGTTGCTCCCACCACTGCGATGGTTGAAGGGATGTaGTCGGAGCAGTTGCAGAACTCATCCAGGTTCAGAGAATCGATT +
Preference number: 5 (lower is better)
Translates to: TPEPVAPTTAMVEGM*SEQLQNSSRFRESI
Trigger: AATCGATTCTCTGAACCTGGATGAGTTCTGCAACTGCTCCGAGCACATCCCTTCAACCATCGCAGTGGTGGGAGCAACCGGCTCCGGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS GCA 90 bp TTCCTGGGATGGACTTTCTGTAGGAATTCTCGGAAGCCTGGAATCTaGCCAGCCTTCAGACCGAACCCAATGGTACCCCCGACTACATGG +
Preference number: 5 (lower is better)
Translates to: FLGWTFCRNSRKPGI*PAFRPNPMVPPTTW
Trigger: CCATGTAGTCGGGGGTACCATTGGGTTCGGTCTGAAGGCTGGGCAGATTCCAGGCTTCCGAGAATTCCTACAGAAAGTCCATCCCAGGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CCA 90 bp CAGTTCCAACGGAAATACTCGATAATGTCAGCCATCGCGGTGGCCTaGTGTTCGTCGTTGGGAATGGTGCGGAGGAAGGACTTGAACTGG +
Preference number: 5 (lower is better)
Translates to: QFQRKYSIMSAIAVA*CSSLGMVRRKDLNW
Trigger: CCAGTTCAAGTCCTTCCTCCGCACCATTCCCAACGACGAACACCAGGCCACCGCGATGGCTGACATTATCGAGTATTTCCGTTGGAACTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS-3UTR CAA 90 bp TTTTTAGAGGGAAGCAGGTGGGTAGCTTATAGCCTTGCTTTCATCCGAGCTGGTCAGTCCCGGCTGCAGTaGGAGAAGGGCACCTCTCTG +
Preference number: 5 (lower is better)
Translates to: FLEGSRWVAYSLAFIRAGQSRLQ*EKGTSL
Trigger: CAGAGAGGTGCCCTTCTCCAACTGCAGCCGGGACTG...ACCAGCTCGGATGAAAGCAAGGCTATAAGCTACCCACCTGCTTCCCTCTAAAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000063597.14
CDS TCA 90 bp AGCATGAGCCGCAGTGCTGGAGCGCACCTCCTCGATGGTGTTCCGTaGAGGCTTGAAGAGGATGATGTAGACCTTGTTGAAGAAGATGCA +
Preference number: 5 (lower is better)
Translates to: SMSRSAGAHLLDGVP*RLEEDDVDLVEEDA
Trigger: TGCATCTTCTTCAACAAGGTCTACATCATCCTCTTCAAGCCTTCACGGAACACCATCGAGGAGGTGCGCTCCAGCACTGCGGCTCATGCT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS GCA 90 bp CTCTCGGAACTTCTCAATGCCAGGCCTGCCATAGTCGTCGTCGGCTaGAATTGTGCCCACCCAGTTCCAACGGAAATACTCGATAATGTC +
Preference number: 5 (lower is better)
Translates to: LSELLNARPAIVVVG*NCAHPVPTEILDNV
Trigger: GACATTATCGAGTATTTCCGTTGGAACTGGGTGGGCACAATTGCAGCCGACGACGACTATGGCAGGCCTGGCATTGAGAAGTTCCGAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS GCA 90 bp TCATCGAAGGTCACCTGCTCCCCCATGTTGTTGGTGAAATTCAGGTaGCGTAGGTGTTTCAGGACCTGCCAGGCCTCAACCTTCTTGATG +
Preference number: 5 (lower is better)
Translates to: SSKVTCSPMLLVKFR*RRCFRTCQASTFLM
Trigger: CATCAAGAAGGTTGAGGCCTGGCAGGTCCTGAAACACCTACGGCACCTGAATTTCACCAACAACATGGGGGAGCAGGTGACCTTCGATGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000172826.2
CDS GCA 90 bp TTCCAAAGGGCTCAGTCCACGCCAGGAACTCAATCTCCTTGGCAATaGAGGAAGTGTGGTTCTCATTGGACCAGAAGTCATCCGGGCACT +
Preference number: 5 (lower is better)
Translates to: FQRAQSTPGTQSPWQ*RKCGSHWTRSHPGT
Trigger: AGTGCCCGGATGACTTCTGGTCCAATGAGAACCACACTTCCTGCATTGCCAAGGAGATTGAGTTCCTGGCGTGGACTGAGCCCTTTGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CCA 90 bp TGGATCACTTCCACCACCTGCTGGATCTCTTCCTCATCAGAGTACTaGGAGATGAGCTCGCTGAAGTCAATGCAGATGTCCCTCTCCTCG +
Preference number: 5 (lower is better)
Translates to: WITSTTCWISSSSEY*EMSSLKSMQMSLSS
Trigger: CGAGGAGAGGGACATCTGCATTGACTTCAGCGAGCTCATCTCCCAGTACTCTGATGAGGAAGAGATCCAGCAGGTGGTGGAAGTGATCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CCA 90 bp CACATTGTAGTACCCAACTTCCTTGAACACAATGGAGCCGTCCTCTaGGGAGAGGTGCCAGTTGATGATGGAGTAGTTCCCCACCAGGTC +
Preference number: 5 (lower is better)
Translates to: HIVVPNFLEHNGAVL*GEVPVDDGVVPHQV
Trigger: GACCTGGTGGGGAACTACTCCATCATCAACTGGCACCTCTCCCCAGAGGACGGCTCCATTGTGTTCAAGGAAGTTGGGTACTACAATGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000172826.2
CDS CCA 90 bp TCAGTCCACGCCAGGAACTCAATCTCCTTGGCAATGCAGGAAGTGTaGTTCTCATTGGACCAGAAGTCATCCGGGCACTTGTCACAGGCA +
Preference number: 5 (lower is better)
Translates to: SVHARNSISLAMQEV*FSLDQKSSGHLSQA
Trigger: TGCCTGTGACAAGTGCCCGGATGACTTCTGGTCCAATGAGAACCACACTTCCTGCATTGCCAAGGAGATTGAGTTCCTGGCGTGGACTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CCA 90 bp GAGCGATTCCAAAGGGCTCAGTCCACGCCAGGAACTCAATCTCCTTaGCAATGCAGGAAGTGTGGTTCTCATTGGACCAGAAGTCATCCG +
Preference number: 5 (lower is better)
Translates to: ERFQRAQSTPGTQSP*QCRKCGSHWTRSHP
Trigger: CGGATGACTTCTGGTCCAATGAGAACCACACTTCCTGCATTGCCAAGGAGATTGAGTTCCTGGCGTGGACTGAGCCCTTTGGAATCGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS-3UTR CAA 90 bp ATCCTTTTTCCTGGGACTCTAAGAAAAACTCTCAACCGGGTAACCTCTCCCTCCCGGGTAAAGGTCCTTTaGCGCCGTCTTGCAGGTGGC +
Preference number: 5 (lower is better)
Translates to: ILFPGTLRKTLNRVTSPSRVKVL*RRLAGG
Trigger: GCCACCTGCAAGACGGCGCAAAAGGACCTTTACCCG...GGAGGGAGAGGTTACCCGGTTGAGAGTTTTTCTTAGAGTCCCAGGAAAAAGGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CAA 90 bp CTTATAGCCTTGCTTTCATCCGAGCTGGTGGTGGATGGAGCAGAGGAAAAGATTCGGGTAAAGGTCCTTTaGCGCCGTCTTGCAGGTGGC +
Preference number: 5 (lower is better)
Translates to: LIALLSSELVVDGAEEKIRVKVL*RRLAGG
Trigger: GCCACCTGCAAGACGGCGCAAAAGGACCTTTACCCG...AATCTTTTCCTCTGCTCCATCCACCACCAGCTCGGATGAAAGCAAGGCTATAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CAA 90 bp ATGGTGGCAGATCTGATGTCCCATCCATCTGTATCTGGACTGTGCCTCGGGGTAAAGATGACCTTCTGTTaGCATCTCGGCTGCTGTGGC +
Preference number: 5 (lower is better)
Translates to: MVADLMSHPSVSGLCLGVKMTFC*HLGCCG
Trigger: GCCACAGCAGCCGAGATGCAAACAGAAGGTCATCTT...TACCCCGAGGCACAGTCCAGATACAGATGGATGGGACATCAGATCTGCCACCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS GCA 90 bp ACGACAATGACCTTGGCTGTAGAGTTCTGGATCACTTCCACCACCTaGTGGATCTCTTCCTCATCAGAGTACTGGGAGATGAGCTCGCTG +
Preference number: 5 (lower is better)
Translates to: TTMTLAVEFWITSTT*WISSSSEYWEMSSL
Trigger: CAGCGAGCTCATCTCCCAGTACTCTGATGAGGAAGAGATCCAGCAGGTGGTGGAAGTGATCCAGAACTCTACAGCCAAGGTCATTGTCGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CCA 90 bp TCTGGGCCGCTGGAGAAAACGACAATGACCTTGGCTGTAGAGTTCTaGATCACTTCCACCACCTGCTGGATCTCTTCCTCATCAGAGTAC +
Preference number: 5 (lower is better)
Translates to: SGPLEKTTMTLAVEF*ITSTTCWISSSSEY
Trigger: GTACTCTGATGAGGAAGAGATCCAGCAGGTGGTGGAAGTGATCCAGAACTCTACAGCCAAGGTCATTGTCGTTTTCTCCAGCGGCCCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS-3UTR CAA 90 bp CTTATAGCCTTGCTTTCATCCGAGCTGGTGGTGGATGGAGCAGAGGAAAAGATTTATCCCAGAGTCATGTaGGGAAGAAGGGCGGGGCTG +
Preference number: 5 (lower is better)
Translates to: LIALLSSELVVDGAEEKIYPRVM*GRRAGL
Trigger: CAGCCCCGCCCTTCTTCCCAACATGACTCTGGGATA...AATCTTTTCCTCTGCTCCATCCACCACCAGCTCGGATGAAAGCAAGGCTATAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CAA 90 bp TTTTTAGAGGGAAGCAGGTGGGTAGCTTATAGCCTTGCTTTCATCCGAGCTGGTTCTCGGTTGGTGGCCTaGACAATGGGCGTGTTTCGG +
Preference number: 5 (lower is better)
Translates to: FLEGSRWVAYSLAFIRAGSRLVA*TMGVFR
Trigger: CCGAAACACGCCCATTGTCAAGGCCACCAACCGAGA...ACCAGCTCGGATGAAAGCAAGGCTATAAGCTACCCACCTGCTTCCCTCTAAAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS GCA 90 bp TTGCTCCCACCACTGCGATGGTTGAAGGGATGTGCTCGGAGCAGTTaGAGAACTCATCCAGGTTCAGAGAATCGATTTTGTTCTGGGCAA +
Preference number: 5 (lower is better)
Translates to: LLPPLRWLKGCARSS*RTHPGSENRFCSGQ
Trigger: TTGCCCAGAACAAAATCGATTCTCTGAACCTGGATGAGTTCTGCAACTGCTCCGAGCACATCCCTTCAACCATCGCAGTGGTGGGAGCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CCA 90 bp ACAATGACCTTGGCTGTAGAGTTCTGGATCACTTCCACCACCTGCTaGATCTCTTCCTCATCAGAGTACTGGGAGATGAGCTCGCTGAAG +
Preference number: 5 (lower is better)
Translates to: TMTLAVEFWITSTTC*ISSSSEYWEMSSLK
Trigger: CTTCAGCGAGCTCATCTCCCAGTACTCTGATGAGGAAGAGATCCAGCAGGTGGTGGAAGTGATCCAGAACTCTACAGCCAAGGTCATTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS-3UTR CAA 90 bp ACGTCACAGGAAGGATGCAGATGGAACAGATGTTACACAGTAGCAGCAACAGGGCGGCGCACAATCTCCTaGATGAGAGGTTCTAGGTCT +
Preference number: 5 (lower is better)
Translates to: TSQEGCRWNRCYTVAATGRRTIS*MRGSRS
Trigger: AGACCTAGAACCTCTCATCAAGGAGATTGTGCGCCG...CCCTGTTGCTGCTACTGTGTAACATCTGTTCCATCTGCATCCTTCCTGTGACGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CAA 90 bp AGGACATGTCTGCCTGATGTCTTGCAAATGTACAGTTCTGTCCACTGTCAATGTAGCAGGAACTGCAGGTaGAGTCCCCACCACTTCCGG +
Preference number: 5 (lower is better)
Translates to: RTCLPDVLQMYSSVHCQCSRNCR*SPHHFR
Trigger: CCGGAAGTGGTGGGGACTCAACCTGCAGTTCCTGCT...ACATTGACAGTGGACAGAACTGTACATTTGCAAGACATCAGGCAGACATGTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CAA 90 bp CTAAGATCTAAATGTGGCATTGCCTTCAGGTTCTGGATACATCCATGCATGACGAGCAGGAACTGCAGGTaGAGTCCCCACCACTTCCGG +
Preference number: 5 (lower is better)
Translates to: LRSKCGIAFRFWIHPCMTSRNCR*SPHHFR
Trigger: CCGGAAGTGGTGGGGACTCAACCTGCAGTTCCTGCT...CGTCATGCATGGATGTATCCAGAACCTGAAGGCAATGCCACATTTAGATCTTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS CCA 90 bp CCAGGTTCAGAGAATCGATTTTGTTCTGGGCAACAAAACTCAAGGTaGCCTCCAGAGCCTTGGAGACGGTGTTACAGGTGTCGAATATCC +
Preference number: 5 (lower is better)
Translates to: PGSENRFCSGQQNSR*PPEPWRRCYRCRIS
Trigger: GGATATTCGACACCTGTAACACCGTCTCCAAGGCTCTGGAGGCCACCTTGAGTTTTGTTGCCCAGAACAAAATCGATTCTCTGAACCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CCA 90 bp TCCCAAAACTCTTTGGCAAAACCATTGTGGACAGACTTCCTGGGATaGACTTTCTGTAGGAATTCTCGGAAGCCTGGAATCTGCCCAGCC +
Preference number: 5 (lower is better)
Translates to: SQNSLAKPLWTDFLG*TFCRNSRKPGICPA
Trigger: GGCTGGGCAGATTCCAGGCTTCCGAGAATTCCTACAGAAAGTCCATCCCAGGAAGTCTGTCCACAATGGTTTTGCCAAAGAGTTTTGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS-3UTR CAA 90 bp ATCCTAAGATCTAAATGTGGCATTGCCTTCAGGTTCTGGATACATCCATGCATGAATGTCCCCCTTCTTTaGGGCTCGCTGGTCAGGCCC +
Preference number: 5 (lower is better)
Translates to: ILRSKCGIAFRFWIHPCMNVPLL*GSLVRP
Trigger: GGGCCTGACCAGCGAGCCCAAAAGAAGGGGGACATT...CATGCATGGATGTATCCAGAACCTGAAGGCAATGCCACATTTAGATCTTAGGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CAA 90 bp ATGGTGGCAGATCTGATGTCCCATCCATCTGTATCTGGACTGTGCCTCGGGGTACCACAGACTCTGGTCTaGACTTCAGATCTTGATCTT +
Preference number: 5 (lower is better)
Translates to: MVADLMSHPSVSGLCLGVPQTLV*TSDLDL
Trigger: AAGATCAAGATCTGAAGTCAAGACCAGAGTCTGTGG...TACCCCGAGGCACAGTCCAGATACAGATGGATGGGACATCAGATCTGCCACCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CAA 90 bp CTTATAGCCTTGCTTTCATCCGAGCTGGTGGTGGATGGAGCAGAGGAAAAGATTATGTGCTCGGAGCAGTaGCAGAACTCATCCAGGTTC +
Preference number: 5 (lower is better)
Translates to: LIALLSSELVVDGAEEKIMCSEQ*QNSSRF
Trigger: GAACCTGGATGAGTTCTGCAACTGCTCCGAGCACAT...AATCTTTTCCTCTGCTCCATCCACCACCAGCTCGGATGAAAGCAAGGCTATAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CAA 90 bp CTTATAGCCTTGCTTTCATCCGAGCTGGTGGTGGATGGAGCAGAGGAAAAGATTCGGCGCACAATCTCCTaGATGAGAGGTTCTAGGTCT +
Preference number: 5 (lower is better)
Translates to: LIALLSSELVVDGAEEKIRRTIS*MRGSRS
Trigger: AGACCTAGAACCTCTCATCAAGGAGATTGTGCGCCG...AATCTTTTCCTCTGCTCCATCCACCACCAGCTCGGATGAAAGCAAGGCTATAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CAA 90 bp CCTGATGTCTTGCAAATGTACAGTTCTGTCCACTGTCAATGTGATAGACAGTCCTCTGCACAGGACCCGTaGGTGAAAAGCCCTCTTCCG +
Preference number: 5 (lower is better)
Translates to: PDVLQMYSSVHCQCDRQSSAQDP*VKSPLP
Trigger: CGGAAGAGGGCTTTTCACCAACGGGTCCTGTGCAGA...GGACTGTCTATCACATTGACAGTGGACAGAACTGTACATTTGCAAGACATCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CAA 90 bp AGGACATGTCTGCCTGATGTCTTGCAAATGTACAGTTCTGTCCACTGTCAATGTCAGGCCTCAACCTTCTaGATGTCTGCACAGGACCCG +
Preference number: 5 (lower is better)
Translates to: RTCLPDVLQMYSSVHCQCQASTF*MSAQDP
Trigger: CGGGTCCTGTGCAGACATCAAGAAGGTTGAGGCCTG...ACATTGACAGTGGACAGAACTGTACATTTGCAAGACATCAGGCAGACATGTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CAA 90 bp ACGTCACAGGAAGGATGCAGATGGAACAGATGTTACACAGTAGCAGCAACAGGGAAGCTGGTGGGTATTTaGGCCTCAAATACCAGGAGG +
Preference number: 5 (lower is better)
Translates to: TSQEGCRWNRCYTVAATGKLVGI*ASNTRR
Trigger: CCTCCTGGTATTTGAGGCCAAAATACCCACCAGCTT...CCCTGTTGCTGCTACTGTGTAACATCTGTTCCATCTGCATCCTTCCTGTGACGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CAA 90 bp TTTTTAGAGGGAAGCAGGTGGGTAGCTTATAGCCTTGCTTTCATCCGAGCTGGTAACCGGTCTTCGCTGTaGCTTTTGCTGCTGATGGAG +
Preference number: 5 (lower is better)
Translates to: FLEGSRWVAYSLAFIRAGNRSSL*LLLLME
Trigger: CTCCATCAGCAGCAAAAGCAACAGCGAAGACCGGTT...ACCAGCTCGGATGAAAGCAAGGCTATAAGCTACCCACCTGCTTCCCTCTAAAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS CCA 90 bp CGATTTTGTTCTGGGCAACAAAACTCAAGGTGGCCTCCAGAGCCTTaGAGACGGTGTTACAGGTGTCGAATATCCTATATCCCAGAGTCA +
Preference number: 5 (lower is better)
Translates to: RFCSGQQNSRWPPEP*RRCYRCRISYIPES
Trigger: TGACTCTGGGATATAGGATATTCGACACCTGTAACACCGTCTCCAAGGCTCTGGAGGCCACCTTGAGTTTTGTTGCCCAGAACAAAATCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS-3UTR CAA 90 bp TTTTTAGAGGGAAGCAGGTGGGTAGCTTATAGCCTTGCTTTCATCCGAGCTGGTGTGCGGAGGAAGGACTaGAACTGGTTCTTATTGCTG +
Preference number: 5 (lower is better)
Translates to: FLEGSRWVAYSLAFIRAGVRRKD*NWFLLL
Trigger: CAGCAATAAGAACCAGTTCAAGTCCTTCCTCCGCAC...ACCAGCTCGGATGAAAGCAAGGCTATAAGCTACCCACCTGCTTCCCTCTAAAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CAA 90 bp TGTACAGTTCTGTCCACTGTCAATGTGATAGACAGTCCTGGTGACTATCTGGCTGAAGTGTGGTTCTCATaGGACCAGAAGTCATCCGGG +
Preference number: 5 (lower is better)
Translates to: CTVLSTVNVIDSPGDYLAEVWFS*DQKSSG
Trigger: CCCGGATGACTTCTGGTCCAATGAGAACCACACTTC...AGCCAGATAGTCACCAGGACTGTCTATCACATTGACAGTGGACAGAACTGTACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CAA 90 bp ATCCTAAGATCTAAATGTGGCATTGCCTTCAGGTTCTGGATACATCCATGCATGTCTCGGTTGGTGGCCTaGACAATGGGCGTGTTTCGG +
Preference number: 5 (lower is better)
Translates to: ILRSKCGIAFRFWIHPCMSRLVA*TMGVFR
Trigger: CCGAAACACGCCCATTGTCAAGGCCACCAACCGAGA...CATGCATGGATGTATCCAGAACCTGAAGGCAATGCCACATTTAGATCTTAGGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS CCA 90 bp CTCTTCCGGGTAAGCAGGTGTATATATCTTGCAGGGCGTGCGCAATaGAGTAGACGGCTAAGTACACGTTGTAGGATATCCGTAAATGTT +
Preference number: 5 (lower is better)
Translates to: LFRVSRCIYLAGRAQ*SRRLSTRCRISVNV
Trigger: AACATTTACGGATATCCTACAACGTGTACTTAGCCGTCTACTCCATTGCGCACGCCCTGCAAGATATATACACCTGCTTACCCGGAAGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS-3UTR CAA 90 bp CTAAGATCTAAATGTGGCATTGCCTTCAGGTTCTGGATACATCCATGCATGACGATGTGCTCGGAGCAGTaGCAGAACTCATCCAGGTTC +
Preference number: 5 (lower is better)
Translates to: LRSKCGIAFRFWIHPCMTMCSEQ*QNSSRF
Trigger: GAACCTGGATGAGTTCTGCAACTGCTCCGAGCACAT...CGTCATGCATGGATGTATCCAGAACCTGAAGGCAATGCCACATTTAGATCTTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CAA 90 bp CCTGATGTCTTGCAAATGTACAGTTCTGTCCACTGTCAATGTGATAGACAGTCCTCTTCGCTGTTGCTTTaGCTGCTGATGGAGGAGGAG +
Preference number: 5 (lower is better)
Translates to: PDVLQMYSSVHCQCDRQSSSLLL*LLMEEE
Trigger: CTCCTCCTCCATCAGCAGCAAAAGCAACAGCGAAGA...GGACTGTCTATCACATTGACAGTGGACAGAACTGTACATTTGCAAGACATCAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CAA 90 bp CTAAGATCTAAATGTGGCATTGCCTTCAGGTTCTGGATACATCCATGCATGACGTCTTCGCTGTTGCTTTaGCTGCTGATGGAGGAGGAG +
Preference number: 5 (lower is better)
Translates to: LRSKCGIAFRFWIHPCMTSSLLL*LLMEEE
Trigger: CTCCTCCTCCATCAGCAGCAAAAGCAACAGCGAAGA...CGTCATGCATGGATGTATCCAGAACCTGAAGGCAATGCCACATTTAGATCTTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CAA 90 bp CTAAGATCTAAATGTGGCATTGCCTTCAGGTTCTGGATACATCCATGCATGACGAAGATGACCTTCTGTTaGCATCTCGGCTGCTGTGGC +
Preference number: 5 (lower is better)
Translates to: LRSKCGIAFRFWIHPCMTKMTFC*HLGCCG
Trigger: GCCACAGCAGCCGAGATGCAAACAGAAGGTCATCTT...CGTCATGCATGGATGTATCCAGAACCTGAAGGCAATGCCACATTTAGATCTTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS GCA 90 bp CTTCTCACGAAGGTGTCCACGGGTAAAGGTCCTTTTGCGCCGTCTTaGAGGTGGCAATTAAATGTTTCTTCCCAAAACTCTTTGGCAAAA +
Preference number: 5 (lower is better)
Translates to: LLTKVSTGKGPFAPS*RWQLNVSSQNSLAK
Trigger: TTTTGCCAAAGAGTTTTGGGAAGAAACATTTAATTGCCACCTGCAAGACGGCGCAAAAGGACCTTTACCCGTGGACACCTTCGTGAGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CCA 90 bp TTTCTTCCCAAAACTCTTTGGCAAAACCATTGTGGACAGACTTCCTaGGATGGACTTTCTGTAGGAATTCTCGGAAGCCTGGAATCTGCC +
Preference number: 5 (lower is better)
Translates to: FLPKTLWQNHCGQTS*DGLSVGILGSLESA
Trigger: GGCAGATTCCAGGCTTCCGAGAATTCCTACAGAAAGTCCATCCCAGGAAGTCTGTCCACAATGGTTTTGCCAAAGAGTTTTGGGAAGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS-3UTR CAA 90 bp CTAAGATCTAAATGTGGCATTGCCTTCAGGTTCTGGATACATCCATGCATGACGGTGCGGAGGAAGGACTaGAACTGGTTCTTATTGCTG +
Preference number: 5 (lower is better)
Translates to: LRSKCGIAFRFWIHPCMTVRRKD*NWFLLL
Trigger: CAGCAATAAGAACCAGTTCAAGTCCTTCCTCCGCAC...CGTCATGCATGGATGTATCCAGAACCTGAAGGCAATGCCACATTTAGATCTTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CAA 90 bp ATCCTAAGATCTAAATGTGGCATTGCCTTCAGGTTCTGGATACATCCATGCATGTGCTCCCCCATGTTGTaGGTGAAATTCAGGTGCCGT +
Preference number: 5 (lower is better)
Translates to: ILRSKCGIAFRFWIHPCMCSPML*VKFRCR
Trigger: ACGGCACCTGAATTTCACCAACAACATGGGGGAGCA...CATGCATGGATGTATCCAGAACCTGAAGGCAATGCCACATTTAGATCTTAGGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000063597.14
CDS-3UTR CAA 90 bp GTTCTGTCCACTGTCAATGTGATAGACAGTCCTGGTGACTATCTGGCTTTTAGAAAGCTGGTGGGTATTTaGGCCTCAAATACCAGGAGG +
Preference number: 5 (lower is better)
Translates to: VLSTVNVIDSPGDYLAFRKLVGI*ASNTRR
Trigger: CCTCCTGGTATTTGAGGCCAAAATACCCACCAGCTT...TCTAAAAGCCAGATAGTCACCAGGACTGTCTATCACATTGACAGTGGACAGAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS TCA 90 bp GAATCCACGGAAGTTATACCTGATGCACTCCACAGACTCTGGTCTTaGCTTCAGATCTTGATCTTTGGCTGCTACTCCAAAATGGATAGG +
Preference number: 5 (lower is better)
Translates to: ESTEVIPDALHRLWS*LQILIFGCYSKMDR
Trigger: CCTATCCATTTTGGAGTAGCAGCCAAAGATCAAGATCTGAAGTCAAGACCAGAGTCTGTGGAGTGCATCAGGTATAACTTCCGTGGATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS-3UTR CAA 90 bp TTTCTTAAGGATTACGCTATGTACATTGATATTAGTTACAGAGACAGCTCGTTGAATGTCCCCCTTCTTTaGGGCTCGCTGGTCAGGCCC +
Preference number: 5 (lower is better)
Translates to: FLKDYAMYIDISYRDSSLNVPLL*GSLVRP
Trigger: GGGCCTGACCAGCGAGCCCAAAAGAAGGGGGACATT...CAACGAGCTGTCTCTGTAACTAATATCAATGTACATAGCGTAATCCTTAAGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CAA 90 bp CAGTTTATAATCGCCCATGGACTATTACAACAGAAGCAGTTTCTTAAGGATTACCAGGCCTCAACCTTCTaGATGTCTGCACAGGACCCG +
Preference number: 5 (lower is better)
Translates to: QFIIAHGLLQQKQFLKDYQASTF*MSAQDP
Trigger: CGGGTCCTGTGCAGACATCAAGAAGGTTGAGGCCTG...GTAATCCTTAAGAAACTGCTTCTGTTGTAATAGTCCATGGGCGATTATAAACTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS TCA 90 bp TTATACCTGATGCACTCCACAGACTCTGGTCTTGACTTCAGATCTTaGTCTTTGGCTGCTACTCCAAAATGGATAGGAAAGAGACCTCCT +
Preference number: 5 (lower is better)
Translates to: LYLMHSTDSGLDFRS*SLAATPKWIGKRPP
Trigger: AGGAGGTCTCTTTCCTATCCATTTTGGAGTAGCAGCCAAAGATCAAGATCTGAAGTCAAGACCAGAGTCTGTGGAGTGCATCAGGTATAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS TCA 90 bp CAAAGATCATGGCTTGTAACCATCGGAATCCACGGAAGTTATACCTaGTGCACTCCACAGACTCTGGTCTTGACTTCAGATCTTGATCTT +
Preference number: 5 (lower is better)
Translates to: QRSWLVTIGIHGSYT*CTPQTLVLTSDLDL
Trigger: AAGATCAAGATCTGAAGTCAAGACCAGAGTCTGTGGAGTGCATCAGGTATAACTTCCGTGGATTCCGATGGTTACAAGCCATGATCTTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS-3UTR CAA 90 bp CTAAGATCTAAATGTGGCATTGCCTTCAGGTTCTGGATACATCCATGCATGACGCCACAGACTCTGGTCTaGACTTCAGATCTTGATCTT +
Preference number: 5 (lower is better)
Translates to: LRSKCGIAFRFWIHPCMTPQTLV*TSDLDL
Trigger: AAGATCAAGATCTGAAGTCAAGACCAGAGTCTGTGG...CGTCATGCATGGATGTATCCAGAACCTGAAGGCAATGCCACATTTAGATCTTAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CAA 90 bp CTTATAGCCTTGCTTTCATCCGAGCTGGTGGTGGATGGAGCAGAGGAAAAGATTTTCAGAGAATCGATTTaGTTCTGGGCAACAAAACTC +
Preference number: 5 (lower is better)
Translates to: LIALLSSELVVDGAEEKIFRESI*FWATKL
Trigger: GAGTTTTGTTGCCCAGAACAAAATCGATTCTCTGAA...AATCTTTTCCTCTGCTCCATCCACCACCAGCTCGGATGAAAGCAAGGCTATAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CAA 90 bp AGGACATGTCTGCCTGATGTCTTGCAAATGTACAGTTCTGTCCACTGTCAATGTTTGAACTGGTTCTTATaGCTGAGAAGCCTGCTAGAG +
Preference number: 5 (lower is better)
Translates to: RTCLPDVLQMYSSVHCQCLNWFL*LRSLLE
Trigger: CTCTAGCAGGCTTCTCAGCAATAAGAACCAGTTCAA...ACATTGACAGTGGACAGAACTGTACATTTGCAAGACATCAGGCAGACATGTCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CAA 90 bp TTTATAAATAGGAGAGGACATGTCTGCCTGATGTCTTGCAAATGTACAGTTCTGAAGGCAGTGGAGCTATaGAGTAACCTGTTGCCGCCT +
Preference number: 5 (lower is better)
Translates to: FINRRGHVCLMSCKCTVLKAVEL*SNLLPP
Trigger: AGGCGGCAACAGGTTACTCAATAGCTCCACTGCCTT...CAGAACTGTACATTTGCAAGACATCAGGCAGACATGTCCTCTCCTATTTATAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CAA 90 bp TTTCTTAAGGATTACGCTATGTACATTGATATTAGTTACAGAGACAGCTCGTTGTCTGCACAGGACCCGTaGGTGAAAAGCCCTCTTCCG +
Preference number: 5 (lower is better)
Translates to: FLKDYAMYIDISYRDSSLSAQDP*VKSPLP
Trigger: CGGAAGAGGGCTTTTCACCAACGGGTCCTGTGCAGA...CAACGAGCTGTCTCTGTAACTAATATCAATGTACATAGCGTAATCCTTAAGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CAA 90 bp CCTGATGTCTTGCAAATGTACAGTTCTGTCCACTGTCAATGTGATAGACAGTCCTCTTCCCAAAACTCTTaGGCAAAACCATTGTGGACA +
Preference number: 5 (lower is better)
Translates to: PDVLQMYSSVHCQCDRQSSSQNS*AKPLWT
Trigger: TGTCCACAATGGTTTTGCCAAAGAGTTTTGGGAAGA...GGACTGTCTATCACATTGACAGTGGACAGAACTGTACATTTGCAAGACATCAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CAA 90 bp CAGTTTATAATCGCCCATGGACTATTACAACAGAAGCAGTTTCTTAAGGATTACGAAGTGTGGTTCTCATaGGACCAGAAGTCATCCGGG +
Preference number: 5 (lower is better)
Translates to: QFIIAHGLLQQKQFLKDYEVWFS*DQKSSG
Trigger: CCCGGATGACTTCTGGTCCAATGAGAACCACACTTC...GTAATCCTTAAGAAACTGCTTCTGTTGTAATAGTCCATGGGCGATTATAAACTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS CCA 90 bp TGGCAATTAAATGTTTCTTCCCAAAACTCTTTGGCAAAACCATTGTaGACAGACTTCCTGGGATGGACTTTCTGTAGGAATTCTCGGAAG +
Preference number: 5 (lower is better)
Translates to: WQLNVSSQNSLAKPL*TDFLGWTFCRNSRK
Trigger: CTTCCGAGAATTCCTACAGAAAGTCCATCCCAGGAAGTCTGTCCACAATGGTTTTGCCAAAGAGTTTTGGGAAGAAACATTTAATTGCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS-3UTR CAA 90 bp CCTGATGTCTTGCAAATGTACAGTTCTGTCCACTGTCAATGTGATAGACAGTCCTTCAGAGAATCGATTTaGTTCTGGGCAACAAAACTC +
Preference number: 5 (lower is better)
Translates to: PDVLQMYSSVHCQCDRQSFRESI*FWATKL
Trigger: GAGTTTTGTTGCCCAGAACAAAATCGATTCTCTGAA...GGACTGTCTATCACATTGACAGTGGACAGAACTGTACATTTGCAAGACATCAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CAA 90 bp TTTCTTAAGGATTACGCTATGTACATTGATATTAGTTACAGAGACAGCTCGTTGAACCGGTCTTCGCTGTaGCTTTTGCTGCTGATGGAG +
Preference number: 5 (lower is better)
Translates to: FLKDYAMYIDISYRDSSLNRSSL*LLLLME
Trigger: CTCCATCAGCAGCAAAAGCAACAGCGAAGACCGGTT...CAACGAGCTGTCTCTGTAACTAATATCAATGTACATAGCGTAATCCTTAAGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS-3UTR CAA 90 bp TTTATAAATAGGAGAGGACATGTCTGCCTGATGTCTTGCAAATGTACAGTTCTGAAGATCTTCCCCTCATaGATGAACAGTCTTTCTCCC +
Preference number: 5 (lower is better)
Translates to: FINRRGHVCLMSCKCTVLKIFPS*MNSLSP
Trigger: GGGAGAAAGACTGTTCATCAATGAGGGGAAGATCTT...CAGAACTGTACATTTGCAAGACATCAGGCAGACATGTCCTCTCCTATTTATAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063597.14
CDS-3UTR CAA 90 bp AGTTTCTTAAGGATTACGCTATGTACATTGATATTAGTTACAGAGACAGCTCGTTCTTCCCAAAACTCTTaGGCAAAACCATTGTGGACA +
Preference number: 5 (lower is better)
Translates to: SFLRITLCTLILVTETARSSQNS*AKPLWT
Trigger: TGTCCACAATGGTTTTGCCAAAGAGTTTTGGGAAGA...ACGAGCTGTCTCTGTAACTAATATCAATGTACATAGCGTAATCCTTAAGAAACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
CDS CAA 72 bp GAGCCTCCGAGGCTGCTGGACCGCTTCCGGGAGATGTaGGGGCGGCGTAGAGTGGCGCGGGCTGCCACTTTG +
Preference number: 6 (lower is better)
Translates to: EPPRLLDRFREM*GRRRVARAATL
Trigger: CAAAGTGGCAGCCCGCGCCACTCTACGCCGCCCCAACATCTCCCGGAAGCGGTCCAGCAGCCTCGGAGGCTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS GCA 72 bp AGGAGGAGGGAATCGACCCAGTGGAGCCTCCGAGGCTaGTGGACCGCTTCCGGGAGATGTTGGGGCGGCGTA +
Preference number: 6 (lower is better)
Translates to: RRRESTQWSLRG*WTASGRCWGGV
Trigger: TACGCCGCCCCAACATCTCCCGGAAGCGGTCCAGCAGCCTCGGAGGCTCCACTGGGTCGATTCCCTCCTCCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CCA 72 bp CCGAAGGCGGGCTGTCGCAGGCGGCAGGTCCAGTCCTaGGGCTCCCCAATGAAGAACAGGGAGCTGGAGAAG +
Preference number: 6 (lower is better)
Translates to: PKAGCRRRQVQS*GSPMKNRELEK
Trigger: CTTCTCCAGCTCCCTGTTCTTCATTGGGGAGCCCCAGGACTGGACCTGCCGCCTGCGACAGCCCGCCTTCGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CCA 72 bp AGGAGGGAATCGACCCAGTGGAGCCTCCGAGGCTGCTaGACCGCTTCCGGGAGATGTTGGGGCGGCGTAGAG +
Preference number: 6 (lower is better)
Translates to: RRESTQWSLRGC*TASGRCWGGVE
Trigger: CTCTACGCCGCCCCAACATCTCCCGGAAGCGGTCCAGCAGCCTCGGAGGCTCCACTGGGTCGATTCCCTCCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS TCA 72 bp CGGCGTAGAGTGGCGCGGGCTGCCACTTTGAAAGCATaGGCCGCAGTGCTGGAGCGCACCTCCTCGATGGTG +
Preference number: 6 (lower is better)
Translates to: RRRVARAATLKA*AAVLERTSSMV
Trigger: CACCATCGAGGAGGTGCGCTCCAGCACTGCGGCTCATGCTTTCAAAGTGGCAGCCCGCGCCACTCTACGCCG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CAA 90 bp AAAGTCCCAGCAGGTTGGCTACCGCTGTGGAGACACCGGAGCCGGTaGCTCCCACCACTGCGATGGTTGAAGGGATGTGCTCGGAGCAGT +
Preference number: 6 (lower is better)
Translates to: KVPAGWLPLWRHRSR*LPPLRWLKGCARSS
Trigger: ACTGCTCCGAGCACATCCCTTCAACCATCGCAGTGGTGGGAGCAACCGGCTCCGGTGTCTCCACAGCGGTAGCCAACCTGCTGGGACTTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CAA 90 bp TGCTTCTGCCTCTCCGGCTGTGGGAACCGGTCTTCGCTGTTGCTTTaGCTGCTGATGGAGGAGGAGGGAATCGACCCAGTGGAGCCTCCG +
Preference number: 6 (lower is better)
Translates to: CFCLSGCGNRSSLLL*LLMEEEGIDPVEPP
Trigger: CGGAGGCTCCACTGGGTCGATTCCCTCCTCCTCCATCAGCAGCAAAAGCAACAGCGAAGACCGGTTCCCACAGCCGGAGAGGCAGAAGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS TCA 72 bp CCACACACTCAAAACAGCAGGTGGGCTCTCCCTCAATaGTGCCCTTCCTGGTCCCTGCCTGACAGTCCCGGC +
Preference number: 6 (lower is better)
Translates to: PHTQNSRWALPQ*CPSWSLPDSPG
Trigger: GCCGGGACTGTCAGGCAGGGACCAGGAAGGGCATCATTGAGGGAGAGCCCACCTGCTGTTTTGAGTGTGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS GCA 72 bp CCTCGGCTTCCTCTCGGAACTTCTCAATGCCAGGCCTaGCATAGTCGTCGTCGGCTGCAATTGTGCCCACCC +
Preference number: 6 (lower is better)
Translates to: PRLPLGTSQCQA*HSRRRLQLCPP
Trigger: GGGTGGGCACAATTGCAGCCGACGACGACTATGGCAGGCCTGGCATTGAGAAGTTCCGAGAGGAAGCCGAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS GCA 72 bp TCTTGCTGGGTCAGGGCCAGTGGTTGCTGTTGCTTCTaGCTCTCCGGCTGTGGGAACCGGTCTTCGCTGTTG +
Preference number: 6 (lower is better)
Translates to: SCWVRASGCCCF*LSGCGNRSSLL
Trigger: CAACAGCGAAGACCGGTTCCCACAGCCGGAGAGGCAGAAGCAACAGCAACCACTGGCCCTGACCCAGCAAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CAA 90 bp CCGCTGTGGAGACACCGGAGCCGGTTGCTCCCACCACTGCGATGGTaGAAGGGATGTGCTCGGAGCAGTTGCAGAACTCATCCAGGTTCA +
Preference number: 6 (lower is better)
Translates to: PLWRHRSRLLPPLRW*KGCARSSCRTHPGS
Trigger: TGAACCTGGATGAGTTCTGCAACTGCTCCGAGCACATCCCTTCAACCATCGCAGTGGTGGGAGCAACCGGCTCCGGTGTCTCCACAGCGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS TCA 72 bp GACACCGGAGCCGGTTGCTCCCACCACTGCGATGGTTaGAGGGATGTGCTCGGAGCAGTTGCAGAACTCATC +
Preference number: 6 (lower is better)
Translates to: DTGAGCSHHCDG*RDVLGAVAELI
Trigger: GATGAGTTCTGCAACTGCTCCGAGCACATCCCTTCAACCATCGCAGTGGTGGGAGCAACCGGCTCCGGTGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS TCA 72 bp CCCCCGTGCAGAGGGGTCGGAAGGCAGTGGAGCTATTaGGTAACCTGTTGCCGCCTTCCTCGTGACTTCTCA +
Preference number: 6 (lower is better)
Translates to: PPCRGVGRQWSY*VTCCRLPRDFS
Trigger: TGAGAAGTCACGAGGAAGGCGGCAACAGGTTACTCAATAGCTCCACTGCCTTCCGACCCCTCTGCACGGGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS TCA 72 bp TCTTCACCAAGATGCACGAGATACAAAGCACGAAGCTaGTGCCGAAGGCGGGCTGTCGCAGGCGGCAGGTCC +
Preference number: 6 (lower is better)
Translates to: SSPRCTRYKARS*CRRRAVAGGRS
Trigger: GGACCTGCCGCCTGCGACAGCCCGCCTTCGGCATCAGCTTCGTGCTTTGTATCTCGTGCATCTTGGTGAAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS GCA 72 bp GGGGAAGCAGGGCCTGGTGTCTGTTCAAAGTGTCATTaGTCTTCTGGGCCTCCAGGGAGTTCTGGCGCATGG +
Preference number: 6 (lower is better)
Translates to: GEAGPGVCSKCH*SSGPPGSSGAW
Trigger: CCATGCGCCAGAACTCCCTGGAGGCCCAGAAGAGCAATGACACTTTGAACAGACACCAGGCCCTGCTTCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS GCA 72 bp GAAGGGCACCTGCCAGGCCTCAACCTTCTTGATGTCTaGACAGGACCCGTTGGTGAAAAGCCCTCTTCCGGG +
Preference number: 6 (lower is better)
Translates to: EGHLPGLNLLDV*TGPVGEKPSSG
Trigger: CCCGGAAGAGGGCTTTTCACCAACGGGTCCTGTGCAGACATCAAGAAGGTTGAGGCCTGGCAGGTGCCCTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114847.9
CDS CCA 72 bp TGGAGACACCGGAGCCGGTTGCTCCCACCACTGCGATaGTTGAAGGGATGTGCTCGGAGCAGTTGCAGAACT +
Preference number: 6 (lower is better)
Translates to: WRHRSRLLPPLR*LKGCARSSCRT
Trigger: AGTTCTGCAACTGCTCCGAGCACATCCCTTCAACCATCGCAGTGGTGGGAGCAACCGGCTCCGGTGTCTCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CCA 72 bp GGATATAGAAAAGTCCCAGCAGGTTGGCTACCGCTGTaGAGACACCGGAGCCGGTTGCTCCCACCACTGCGA +
Preference number: 6 (lower is better)
Translates to: GYRKVPAGWLPL*RHRSRLLPPLR
Trigger: TCGCAGTGGTGGGAGCAACCGGCTCCGGTGTCTCCACAGCGGTAGCCAACCTGCTGGGACTTTTCTATATCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CCA 72 bp AGCTCACCTGGGGGATATAGAAAAGTCCCAGCAGGTTaGCTACCGCTGTGGAGACACCGGAGCCGGTTGCTC +
Preference number: 6 (lower is better)
Translates to: SSPGGYRKVPAG*LPLWRHRSRLL
Trigger: GAGCAACCGGCTCCGGTGTCTCCACAGCGGTAGCCAACCTGCTGGGACTTTTCTATATCCCCCAGGTGAGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CAA 90 bp ACCAGGTCACCGCACTCATCGAAGGTCACCTGCTCCCCCATGTTGTaGGTGAAATTCAGGTGCCGTAGGTGTTTCAGGACCTGCCAGGCC +
Preference number: 6 (lower is better)
Translates to: TRSPHSSKVTCSPML*VKFRCRRCFRTCQA
Trigger: GGCCTGGCAGGTCCTGAAACACCTACGGCACCTGAATTTCACCAACAACATGGGGGAGCAGGTGACCTTCGATGAGTGCGGTGACCTGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000172826.2
CDS CAA 90 bp CCCACCAGGTCACCGCACTCATCGAAGGTCACCTGCTCCCCCATGTaGTTGGTGAAATTCAGGTGCCGTAGGTGTTTCAGGACCTGCCAG +
Preference number: 6 (lower is better)
Translates to: PTRSPHSSKVTCSPM*LVKFRCRRCFRTCQ
Trigger: CTGGCAGGTCCTGAAACACCTACGGCACCTGAATTTCACCAACAACATGGGGGAGCAGGTGACCTTCGATGAGTGCGGTGACCTGGTGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000172826.2
CDS TCA 72 bp AGGCGGTCAGGAAAATGCCCAGCACCGCAAAGAGAGTaGGAGCGATTCCAAAGGGCTCAGTCCACGCCAGGA +
Preference number: 6 (lower is better)
Translates to: RRSGKCPAPQRE*ERFQRAQSTPG
Trigger: TCCTGGCGTGGACTGAGCCCTTTGGAATCGCTCTCACTCTCTTTGCGGTGCTGGGCATTTTCCTGACCGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS TCA 72 bp GCAGGTGTAGCCGATCAGGGAGCCGAGCGCCATGAGTaGGCCCTCATGGCACGTGATGAAGATGATTTCGTC +
Preference number: 6 (lower is better)
Translates to: AGVADQGAERHE*ALMARDEDDFV
Trigger: GACGAAATCATCTTCATCACGTGCCATGAGGGCTCACTCATGGCGCTCGGCTCCCTGATCGGCTACACCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS GCA 72 bp TGTCCCTCTCCTCGGCTTCCTCTCGGAACTTCTCAATaGCAGGCCTGCCATAGTCGTCGTCGGCTGCAATTG +
Preference number: 6 (lower is better)
Translates to: CPSPRLPLGTSQ*QACHSRRRLQL
Trigger: CAATTGCAGCCGACGACGACTATGGCAGGCCTGGCATTGAGAAGTTCCGAGAGGAAGCCGAGGAGAGGGACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CCA 72 bp CCGATCAGGGAGCCGAGCGCCATGAGTGAGCCCTCATaGCACGTGATGAAGATGATTTCGTCTTCCAGCTCG +
Preference number: 6 (lower is better)
Translates to: PIREPSAMSEPS*HVMKMISSSSS
Trigger: CGAGCTGGAAGACGAAATCATCTTCATCACGTGCCATGAGGGCTCACTCATGGCGCTCGGCTCCCTGATCGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CCA 72 bp AGATGCAGGCTAGCAAGCCAAAGCTGGCTGCCAGGATaGCGATCACCTCCACGGCAGAGACAAACTTGCCGT +
Preference number: 6 (lower is better)
Translates to: RCRLASQSWLPG*RSPPRQRQTCR
Trigger: ACGGCAAGTTTGTCTCTGCCGTGGAGGTGATCGCCATCCTGGCAGCCAGCTTTGGCTTGCTAGCCTGCATCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CCA 72 bp GAGTCCGCCTCTGCACACTGTAGGGGAAGCAGGGCCTaGTGTCTGTTCAAAGTGTCATTGCTCTTCTGGGCC +
Preference number: 6 (lower is better)
Translates to: ESASAHCRGSRA*CLFKVSLLFWA
Trigger: GGCCCAGAAGAGCAATGACACTTTGAACAGACACCAGGCCCTGCTTCCCCTACAGTGTGCAGAGGCGGACTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CCA 72 bp GGGGACATTTCATCTGGGCTTTCTATTTCTGGCTGGTaGTCCCCCACCATTGGCCCTTGCAAGCCCGTCTCC +
Preference number: 6 (lower is better)
Translates to: GDISSGLSISGW*SPTIGPCKPVS
Trigger: GGAGACGGGCTTGCAAGGGCCAATGGTGGGGGACCACCAGCCAGAAATAGAAAGCCCAGATGAAATGTCCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CCA 72 bp GCTGGGGACATTTCATCTGGGCTTTCTATTTCTGGCTaGTGGTCCCCCACCATTGGCCCTTGCAAGCCCGTC +
Preference number: 6 (lower is better)
Translates to: AGDISSGLSISG*WSPTIGPCKPV
Trigger: GACGGGCTTGCAAGGGCCAATGGTGGGGGACCACCAGCCAGAAATAGAAAGCCCAGATGAAATGTCCCCAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CAA 72 bp AGACACCGGAGCCGGTTGCTCCCACCACTGCGATGGTaGAAGGGATGTGCTCGGAGCAGTTGCAGAACTCAT +
Preference number: 6 (lower is better)
Translates to: RHRSRLLPPLRW*KGCARSSCRTH
Trigger: ATGAGTTCTGCAACTGCTCCGAGCACATCCCTTCAACCATCGCAGTGGTGGGAGCAACCGGCTCCGGTGTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CAA 72 bp AGGGGAAGCAGGGCCTGGTGTCTGTTCAAAGTGTCATaGCTCTTCTGGGCCTCCAGGGAGTTCTGGCGCATG +
Preference number: 6 (lower is better)
Translates to: RGSRAWCLFKVS*LFWASREFWRM
Trigger: CATGCGCCAGAACTCCCTGGAGGCCCAGAAGAGCAATGACACTTTGAACAGACACCAGGCCCTGCTTCCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CAA 90 bp TTCAGGTGCCGTAGGTGTTTCAGGACCTGCCAGGCCTCAACCTTCTaGATGTCTGCACAGGACCCGTTGGTGAAAAGCCCTCTTCCGGGT +
Preference number: 6 (lower is better)
Translates to: FRCRRCFRTCQASTF*MSAQDPLVKSPLPG
Trigger: ACCCGGAAGAGGGCTTTTCACCAACGGGTCCTGTGCAGACATCAAGAAGGTTGAGGCCTGGCAGGTCCTGAAACACCTACGGCACCTGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000172826.2
CDS CAA 90 bp GACAGCTCTCGGTTGGTGGCCTTGACAATGGGCGTGTTTCGGAACTaGATGAAGACGCCCAGCACAAAGGCGGTCAGGAAAATGCCCAGC +
Preference number: 6 (lower is better)
Translates to: DSSRLVALTMGVFRN*MKTPSTKAVRKMPS
Trigger: GCTGGGCATTTTCCTGACCGCCTTTGTGCTGGGCGTCTTCATCAAGTTCCGAAACACGCCCATTGTCAAGGCCACCAACCGAGAGCTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS GCA 72 bp CCGGTTGCTCCCACCACTGCGATGGTTGAAGGGATGTaGTCGGAGCAGTTGCAGAACTCATCCAGGTTCAGA +
Preference number: 6 (lower is better)
Translates to: PVAPTTAMVEGM*SEQLQNSSRFR
Trigger: TCTGAACCTGGATGAGTTCTGCAACTGCTCCGAGCACATCCCTTCAACCATCGCAGTGGTGGGAGCAACCGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS GCA 72 bp TTTCAGGACCTGCCAGGCCTCAACCTTCTTGATGTCTaGACAGGACCCGTTGGTGAAAAGCCCTCTTCCGGG +
Preference number: 6 (lower is better)
Translates to: FQDLPGLNLLDV*TGPVGEKPSSG
Trigger: CCCGGAAGAGGGCTTTTCACCAACGGGTCCTGTGCAGACATCAAGAAGGTTGAGGCCTGGCAGGTCCTGAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000172826.2
CDS GCA 72 bp GTCACCTGCTCCCCCATGTTGTTGGTGAAATTCAGGTaGCGTAGGTGTTTCAGGACCTGCCAGGCCTCAACC +
Preference number: 6 (lower is better)
Translates to: VTCSPMLLVKFR*RRCFRTCQAST
Trigger: GGTTGAGGCCTGGCAGGTCCTGAAACACCTACGGCACCTGAATTTCACCAACAACATGGGGGAGCAGGTGAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000172826.2
CDS GCA 72 bp TTCCCCACCAGGTCACCGCACTCATCGAAGGTCACCTaGTCCCCCATGTTGTTGGTGAAATTCAGGTGCCGT +
Preference number: 6 (lower is better)
Translates to: FPTRSPHSSKVT*SPMLLVKFRCR
Trigger: ACGGCACCTGAATTTCACCAACAACATGGGGGAGCAGGTGACCTTCGATGAGTGCGGTGACCTGGTGGGGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000172826.2
CDS CCA 72 bp CGGAAATACTCGATAATGTCAGCCATCGCGGTGGCCTaGTGTTCGTCGTTGGGAATGGTGCGGAGGAAGGAC +
Preference number: 6 (lower is better)
Translates to: RKYSIMSAIAVA*CSSLGMVRRKD
Trigger: GTCCTTCCTCCGCACCATTCCCAACGACGAACACCAGGCCACCGCGATGGCTGACATTATCGAGTATTTCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CAA 72 bp CAGTTGGAGAAGGGCACCTGCCAGGCCTCAACCTTCTaGATGTCTGCACAGGACCCGTTGGTGAAAAGCCCT +
Preference number: 6 (lower is better)
Translates to: QLEKGTCQASTF*MSAQDPLVKSP
Trigger: AGGGCTTTTCACCAACGGGTCCTGTGCAGACATCAAGAAGGTTGAGGCCTGGCAGGTGCCCTTCTCCAACTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114847.9
CDS CAA 90 bp CTGGCCAGCCAGATCCTGCCTGTGATGTTACGGCGCACAATCTCCTaGATGAGAGGTTCTAGGTCTGGGCCGCTGGAGAAAACGACAATG +
Preference number: 6 (lower is better)
Translates to: LASQILPVMLRRTIS*MRGSRSGPLEKTTM
Trigger: CATTGTCGTTTTCTCCAGCGGCCCAGACCTAGAACCTCTCATCAAGGAGATTGTGCGCCGTAACATCACAGGCAGGATCTGGCTGGCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS GCA 72 bp CTTCTCAATGCCAGGCCTGCCATAGTCGTCGTCGGCTaGAATTGTGCCCACCCAGTTCCAACGGAAATACTC +
Preference number: 6 (lower is better)
Translates to: LLNARPAIVVVG*NCAHPVPTEIL
Trigger: GAGTATTTCCGTTGGAACTGGGTGGGCACAATTGCAGCCGACGACGACTATGGCAGGCCTGGCATTGAGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS GCA 72 bp TGGACTTTCTGTAGGAATTCTCGGAAGCCTGGAATCTaGCCAGCCTTCAGACCGAACCCAATGGTACCCCCG +
Preference number: 6 (lower is better)
Translates to: WTFCRNSRKPGI*PAFRPNPMVPP
Trigger: CGGGGGTACCATTGGGTTCGGTCTGAAGGCTGGGCAGATTCCAGGCTTCCGAGAATTCCTACAGAAAGTCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CCA 72 bp TGGGCTTTCTATTTCTGGCTGGTGGTCCCCCACCATTaGCCCTTGCAAGCCCGTCTCCTGAATGGTCATTTC +
Preference number: 6 (lower is better)
Translates to: WAFYFWLVVPHH*PLQARLLNGHF
Trigger: GAAATGACCATTCAGGAGACGGGCTTGCAAGGGCCAATGGTGGGGGACCACCAGCCAGAAATAGAAAGCCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CAA 72 bp ATAATGTCAGCCATCGCGGTGGCCTGGTGTTCGTCGTaGGGAATGGTGCGGAGGAAGGACTTGAACTGGTTC +
Preference number: 6 (lower is better)
Translates to: IMSAIAVAWCSS*GMVRRKDLNWF
Trigger: GAACCAGTTCAAGTCCTTCCTCCGCACCATTCCCAACGACGAACACCAGGCCACCGCGATGGCTGACATTAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CAA 72 bp CGTAGGTGTTTCAGGACCTGCCAGGCCTCAACCTTCTaGATGTCTGCACAGGACCCGTTGGTGAAAAGCCCT +
Preference number: 6 (lower is better)
Translates to: RRCFRTCQASTF*MSAQDPLVKSP
Trigger: AGGGCTTTTCACCAACGGGTCCTGTGCAGACATCAAGAAGGTTGAGGCCTGGCAGGTCCTGAAACACCTACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000172826.2
CDS CAA 72 bp CCGCACTCATCGAAGGTCACCTGCTCCCCCATGTTGTaGGTGAAATTCAGGTGCCGTAGGTGTTTCAGGACC +
Preference number: 6 (lower is better)
Translates to: PHSSKVTCSPML*VKFRCRRCFRT
Trigger: GGTCCTGAAACACCTACGGCACCTGAATTTCACCAACAACATGGGGGAGCAGGTGACCTTCGATGAGTGCGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000172826.2
CDS CAA 72 bp CGGTTGGTGGCCTTGACAATGGGCGTGTTTCGGAACTaGATGAAGACGCCCAGCACAAAGGCGGTCAGGAAA +
Preference number: 6 (lower is better)
Translates to: RLVALTMGVFRN*MKTPSTKAVRK
Trigger: TTTCCTGACCGCCTTTGTGCTGGGCGTCTTCATCAAGTTCCGAAACACGCCCATTGTCAAGGCCACCAACCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CAA 72 bp CTGGGCTTTCTATTTCTGGCTGGTGGTCCCCCACCATaGGCCCTTGCAAGCCCGTCTCCTGAATGGTCATTT +
Preference number: 6 (lower is better)
Translates to: LGFLFLAGGPPP*ALASPSPEWSF
Trigger: AAATGACCATTCAGGAGACGGGCTTGCAAGGGCCAATGGTGGGGGACCACCAGCCAGAAATAGAAAGCCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CAA 90 bp ATGCAGGAAGTGTGGTTCTCATTGGACCAGAAGTCATCCGGGCACTaGTCACAGGCACTCGCATCTGTCTCACCACTGTACTCGCCGTCA +
Preference number: 6 (lower is better)
Translates to: MQEVWFSLDQKSSGH*SQALASVSPLYSPS
Trigger: TGACGGCGAGTACAGTGGTGAGACAGATGCGAGTGCCTGTGACAAGTGCCCGGATGACTTCTGGTCCAATGAGAACCACACTTCCTGCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CAA 90 bp GGCACCTGCCAGGCCTCAACCTTCTTGATGTCTGCACAGGACCCGTaGGTGAAAAGCCCTCTTCCGGGTAAGCAGGTGTATATATCTTGC +
Preference number: 6 (lower is better)
Translates to: GTCQASTFLMSAQDP*VKSPLPGKQVYISC
Trigger: GCAAGATATATACACCTGCTTACCCGGAAGAGGGCTTTTCACCAACGGGTCCTGTGCAGACATCAAGAAGGTTGAGGCCTGGCAGGTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114847.9
CDS TCA 72 bp GTGGAGCTATTGAGTAACCTGTTGCCGCCTTCCTCGTaGCTTCTCACGAAGGTGTCCACGGGTAAAGGTCCT +
Preference number: 6 (lower is better)
Translates to: VELLSNLLPPSS*LLTKVSTGKGP
Trigger: AGGACCTTTACCCGTGGACACCTTCGTGAGAAGTCACGAGGAAGGCGGCAACAGGTTACTCAATAGCTCCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS TCA 72 bp ACTCATCGAAGGTCACCTGCTCCCCCATGTTGTTGGTaGAATTCAGGTGCCGTAGGTGTTTCAGGACCTGCC +
Preference number: 6 (lower is better)
Translates to: THRRSPAPPCCW*NSGAVGVSGPA
Trigger: GGCAGGTCCTGAAACACCTACGGCACCTGAATTTCACCAACAACATGGGGGAGCAGGTGACCTTCGATGAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000172826.2
CDS TCA 72 bp CGCAGTGCTGGAGCGCACCTCCTCGATGGTGTTCCGTaGAGGCTTGAAGAGGATGATGTAGACCTTGTTGAA +
Preference number: 6 (lower is better)
Translates to: RSAGAHLLDGVP*RLEEDDVDLVE
Trigger: TTCAACAAGGTCTACATCATCCTCTTCAAGCCTTCACGGAACACCATCGAGGAGGTGCGCTCCAGCACTGCG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CCA 72 bp GCCTTCAGACCGAACCCAATGGTACCCCCGACTACATaGAAGTACTCAGGCATAGCAATCAGGGAGGAACTG +
Preference number: 6 (lower is better)
Translates to: AFRPNPMVPPTT*KYSGIAIREEL
Trigger: CAGTTCCTCCCTGATTGCTATGCCTGAGTACTTCCATGTAGTCGGGGGTACCATTGGGTTCGGTCTGAAGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CCA 72 bp GTACCCAACTTCCTTGAACACAATGGAGCCGTCCTCTaGGGAGAGGTGCCAGTTGATGATGGAGTAGTTCCC +
Preference number: 6 (lower is better)
Translates to: VPNFLEHNGAVL*GEVPVDDGVVP
Trigger: GGGAACTACTCCATCATCAACTGGCACCTCTCCCCAGAGGACGGCTCCATTGTGTTCAAGGAAGTTGGGTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000172826.2
CDS CCA 72 bp GTCCCCACCACTTCCGGTGGAAGCTGGTGGGTATTTTaGCCTCAAATACCAGGAGGACTCGATTGGTCTTCA +
Preference number: 6 (lower is better)
Translates to: VPTTSGGSWWVF*PQIPGGLDWSS
Trigger: TGAAGACCAATCGAGTCCTCCTGGTATTTGAGGCCAAAATACCCACCAGCTTCCACCGGAAGTGGTGGGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CAA 72 bp TCTAGGTCTGGGCCGCTGGAGAAAACGACAATGACCTaGGCTGTAGAGTTCTGGATCACTTCCACCACCTGC +
Preference number: 6 (lower is better)
Translates to: SRSGPLEKTTMT*AVEFWITSTTC
Trigger: GCAGGTGGTGGAAGTGATCCAGAACTCTACAGCCAAGGTCATTGTCGTTTTCTCCAGCGGCCCAGACCTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CAA 72 bp CAGGCCTCAACCTTCTTGATGTCTGCACAGGACCCGTaGGTGAAAAGCCCTCTTCCGGGTAAGCAGGTGTAT +
Preference number: 6 (lower is better)
Translates to: QASTFLMSAQDP*VKSPLPGKQVY
Trigger: ATACACCTGCTTACCCGGAAGAGGGCTTTTCACCAACGGGTCCTGTGCAGACATCAAGAAGGTTGAGGCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CAA 72 bp TCACCGCACTCATCGAAGGTCACCTGCTCCCCCATGTaGTTGGTGAAATTCAGGTGCCGTAGGTGTTTCAGG +
Preference number: 6 (lower is better)
Translates to: SPHSSKVTCSPM*LVKFRCRRCFR
Trigger: CCTGAAACACCTACGGCACCTGAATTTCACCAACAACATGGGGGAGCAGGTGACCTTCGATGAGTGCGGTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000172826.2
CDS CAA 72 bp GTGTGGTTCTCATTGGACCAGAAGTCATCCGGGCACTaGTCACAGGCACTCGCATCTGTCTCACCACTGTAC +
Preference number: 6 (lower is better)
Translates to: VWFSLDQKSSGH*SQALASVSPLY
Trigger: GTACAGTGGTGAGACAGATGCGAGTGCCTGTGACAAGTGCCCGGATGACTTCTGGTCCAATGAGAACCACAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CAA 72 bp AGTCCCCACCACTTCCGGTGGAAGCTGGTGGGTATTTaGGCCTCAAATACCAGGAGGACTCGATTGGTCTTC +
Preference number: 6 (lower is better)
Translates to: SPHHFRWKLVGI*ASNTRRTRLVF
Trigger: GAAGACCAATCGAGTCCTCCTGGTATTTGAGGCCAAAATACCCACCAGCTTCCACCGGAAGTGGTGGGGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CAA 90 bp AGGACCTGCCAGGCCTCAACCTTCTTGATGTCTGCACAGGACCCGTaGGTGAAAAGCCCTCTTCCGGGTAAGCAGGTGTATATATCTTGC +
Preference number: 6 (lower is better)
Translates to: RTCQASTFLMSAQDP*VKSPLPGKQVYISC
Trigger: GCAAGATATATACACCTGCTTACCCGGAAGAGGGCTTTTCACCAACGGGTCCTGTGCAGACATCAAGAAGGTTGAGGCCTGGCAGGTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000172826.2
CDS CAA 90 bp TGCAGGTTGAGTCCCCACCACTTCCGGTGGAAGCTGGTGGGTATTTaGGCCTCAAATACCAGGAGGACTCGATTGGTCTTCACCAAGATG +
Preference number: 6 (lower is better)
Translates to: CRLSPHHFRWKLVGI*ASNTRRTRLVFTKM
Trigger: CATCTTGGTGAAGACCAATCGAGTCCTCCTGGTATTTGAGGCCAAAATACCCACCAGCTTCCACCGGAAGTGGTGGGGACTCAACCTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS TCA 72 bp CCTTCTTGGCATACACATTGTAGTACCCAACTTCCTTaGACACAATGGAGCCGTCCTCTGGGGAGAGGTGCC +
Preference number: 6 (lower is better)
Translates to: PSWHTHCSTQLP*TQWSRPLGRGA
Trigger: GGCACCTCTCCCCAGAGGACGGCTCCATTGTGTTCAAGGAAGTTGGGTACTACAATGTGTATGCCAAGAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000172826.2
CDS CCA 72 bp GCCAGGAACTCAATCTCCTTGGCAATGCAGGAAGTGTaGTTCTCATTGGACCAGAAGTCATCCGGGCACTTG +
Preference number: 6 (lower is better)
Translates to: ARNSISLAMQEV*FSLDQKSSGHL
Trigger: CAAGTGCCCGGATGACTTCTGGTCCAATGAGAACCACACTTCCTGCATTGCCAAGGAGATTGAGTTCCTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CCA 72 bp CAAAGGGCTCAGTCCACGCCAGGAACTCAATCTCCTTaGCAATGCAGGAAGTGTGGTTCTCATTGGACCAGA +
Preference number: 6 (lower is better)
Translates to: QRAQSTPGTQSP*QCRKCGSHWTR
Trigger: TCTGGTCCAATGAGAACCACACTTCCTGCATTGCCAAGGAGATTGAGTTCCTGGCGTGGACTGAGCCCTTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CCA 72 bp GATGACGAAGCTCCGAGAGGTGGACATGACCAGAGCTaGGGACATTTCATCTGGGCTTTCTATTTCTGGCTG +
Preference number: 6 (lower is better)
Translates to: DDEAPRGGHDQS*GHFIWAFYFWL
Trigger: CAGCCAGAAATAGAAAGCCCAGATGAAATGTCCCCAGCTCTGGTCATGTCCACCTCTCGGAGCTTCGTCATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CAA 90 bp GTTGCTCCCACCACTGCGATGGTTGAAGGGATGTGCTCGGAGCAGTaGCAGAACTCATCCAGGTTCAGAGAATCGATTTTGTTCTGGGCA +
Preference number: 6 (lower is better)
Translates to: VAPTTAMVEGMCSEQ*QNSSRFRESILFWA
Trigger: TGCCCAGAACAAAATCGATTCTCTGAACCTGGATGAGTTCTGCAACTGCTCCGAGCACATCCCTTCAACCATCGCAGTGGTGGGAGCAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CAA 90 bp ATGAGAGGTTCTAGGTCTGGGCCGCTGGAGAAAACGACAATGACCTaGGCTGTAGAGTTCTGGATCACTTCCACCACCTGCTGGATCTCT +
Preference number: 6 (lower is better)
Translates to: MRGSRSGPLEKTTMT*AVEFWITSTTCWIS
Trigger: AGAGATCCAGCAGGTGGTGGAAGTGATCCAGAACTCTACAGCCAAGGTCATTGTCGTTTTCTCCAGCGGCCCAGACCTAGAACCTCTCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CAA 90 bp TGCTCGGAGCAGTTGCAGAACTCATCCAGGTTCAGAGAATCGATTTaGTTCTGGGCAACAAAACTCAAGGTGGCCTCCAGAGCCTTGGAG +
Preference number: 6 (lower is better)
Translates to: CSEQLQNSSRFRESI*FWATKLKVASRALE
Trigger: CTCCAAGGCTCTGGAGGCCACCTTGAGTTTTGTTGCCCAGAACAAAATCGATTCTCTGAACCTGGATGAGTTCTGCAACTGCTCCGAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CAA 90 bp AAATACTCGATAATGTCAGCCATCGCGGTGGCCTGGTGTTCGTCGTaGGGAATGGTGCGGAGGAAGGACTTGAACTGGTTCTTATTGCTG +
Preference number: 6 (lower is better)
Translates to: KYSIMSAIAVAWCSS*GMVRRKDLNWFLLL
Trigger: CAGCAATAAGAACCAGTTCAAGTCCTTCCTCCGCACCATTCCCAACGACGAACACCAGGCCACCGCGATGGCTGACATTATCGAGTATTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS GCA 72 bp ACCTTGGCTGTAGAGTTCTGGATCACTTCCACCACCTaGTGGATCTCTTCCTCATCAGAGTACTGGGAGATG +
Preference number: 6 (lower is better)
Translates to: TLAVEFWITSTT*WISSSSEYWEM
Trigger: CATCTCCCAGTACTCTGATGAGGAAGAGATCCAGCAGGTGGTGGAAGTGATCCAGAACTCTACAGCCAAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CCA 72 bp TGGGAAGAAGGGCGGGGCTGCTGTTTATCTCCTCTATaGCAAAGATCATGGCTTGTAACCATCGGAATCCAC +
Preference number: 6 (lower is better)
Translates to: WEEGRGCCLSPL*QRSWLVTIGIH
Trigger: GTGGATTCCGATGGTTACAAGCCATGATCTTTGCCATAGAGGAGATAAACAGCAGCCCCGCCCTTCTTCCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CCA 72 bp TTGGCTGTAGAGTTCTGGATCACTTCCACCACCTGCTaGATCTCTTCCTCATCAGAGTACTGGGAGATGAGC +
Preference number: 6 (lower is better)
Translates to: LAVEFWITSTTC*ISSSSEYWEMS
Trigger: GCTCATCTCCCAGTACTCTGATGAGGAAGAGATCCAGCAGGTGGTGGAAGTGATCCAGAACTCTACAGCCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS GCA 72 bp CCACTGCGATGGTTGAAGGGATGTGCTCGGAGCAGTTaGAGAACTCATCCAGGTTCAGAGAATCGATTTTGT +
Preference number: 6 (lower is better)
Translates to: PLRWLKGCARSS*RTHPGSENRFC
Trigger: ACAAAATCGATTCTCTGAACCTGGATGAGTTCTGCAACTGCTCCGAGCACATCCCTTCAACCATCGCAGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CCA 72 bp CTGGAGAAAACGACAATGACCTTGGCTGTAGAGTTCTaGATCACTTCCACCACCTGCTGGATCTCTTCCTCA +
Preference number: 6 (lower is better)
Translates to: LEKTTMTLAVEF*ITSTTCWISSS
Trigger: TGAGGAAGAGATCCAGCAGGTGGTGGAAGTGATCCAGAACTCTACAGCCAAGGTCATTGTCGTTTTCTCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CAA 72 bp ACCACTGCGATGGTTGAAGGGATGTGCTCGGAGCAGTaGCAGAACTCATCCAGGTTCAGAGAATCGATTTTG +
Preference number: 6 (lower is better)
Translates to: TTAMVEGMCSEQ*QNSSRFRESIL
Trigger: CAAAATCGATTCTCTGAACCTGGATGAGTTCTGCAACTGCTCCGAGCACATCCCTTCAACCATCGCAGTGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CAA 90 bp TGGAAGCTGGTGGGTATTTTGGCCTCAAATACCAGGAGGACTCGATaGGTCTTCACCAAGATGCACGAGATACAAAGCACGAAGCTGATG +
Preference number: 6 (lower is better)
Translates to: WKLVGILASNTRRTR*VFTKMHEIQSTKLM
Trigger: CATCAGCTTCGTGCTTTGTATCTCGTGCATCTTGGTGAAGACCAATCGAGTCCTCCTGGTATTTGAGGCCAAAATACCCACCAGCTTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CCA 72 bp CAGAACTCATCCAGGTTCAGAGAATCGATTTTGTTCTaGGCAACAAAACTCAAGGTGGCCTCCAGAGCCTTG +
Preference number: 6 (lower is better)
Translates to: QNSSRFRESILF*ATKLKVASRAL
Trigger: CAAGGCTCTGGAGGCCACCTTGAGTTTTGTTGCCCAGAACAAAATCGATTCTCTGAACCTGGATGAGTTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CCA 72 bp GTAAGCAGGTGTATATATCTTGCAGGGCGTGCGCAATaGAGTAGACGGCTAAGTACACGTTGTAGGATATCC +
Preference number: 6 (lower is better)
Translates to: VSRCIYLAGRAQ*SRRLSTRCRIS
Trigger: GGATATCCTACAACGTGTACTTAGCCGTCTACTCCATTGCGCACGCCCTGCAAGATATATACACCTGCTTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CAA 90 bp GCGCCGTCTTGCAGGTGGCAATTAAATGTTTCTTCCCAAAACTCTTaGGCAAAACCATTGTGGACAGACTTCCTGGGATGGACTTTCTGT +
Preference number: 6 (lower is better)
Translates to: APSCRWQLNVSSQNS*AKPLWTDFLGWTFC
Trigger: ACAGAAAGTCCATCCCAGGAAGTCTGTCCACAATGGTTTTGCCAAAGAGTTTTGGGAAGAAACATTTAATTGCCACCTGCAAGACGGCGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CCA 72 bp TCTTTGGCAAAACCATTGTGGACAGACTTCCTGGGATaGACTTTCTGTAGGAATTCTCGGAAGCCTGGAATC +
Preference number: 6 (lower is better)
Translates to: SLAKPLWTDFLG*TFCRNSRKPGI
Trigger: GATTCCAGGCTTCCGAGAATTCCTACAGAAAGTCCATCCCAGGAAGTCTGTCCACAATGGTTTTGCCAAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CCA 72 bp TCCACGGGTAAAGGTCCTTTTGCGCCGTCTTGCAGGTaGCAATTAAATGTTTCTTCCCAAAACTCTTTGGCA +
Preference number: 6 (lower is better)
Translates to: STGKGPFAPSCR*QLNVSSQNSLA
Trigger: TGCCAAAGAGTTTTGGGAAGAAACATTTAATTGCCACCTGCAAGACGGCGCAAAAGGACCTTTACCCGTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CCA 72 bp TGGGTATTTTGGCCTCAAATACCAGGAGGACTCGATTaGTCTTCACCAAGATGCACGAGATACAAAGCACGA +
Preference number: 6 (lower is better)
Translates to: WVFWPQIPGGLD*SSPRCTRYKAR
Trigger: TCGTGCTTTGTATCTCGTGCATCTTGGTGAAGACCAATCGAGTCCTCCTGGTATTTGAGGCCAAAATACCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CAA 72 bp CAGTTGCAGAACTCATCCAGGTTCAGAGAATCGATTTaGTTCTGGGCAACAAAACTCAAGGTGGCCTCCAGA +
Preference number: 6 (lower is better)
Translates to: QLQNSSRFRESI*FWATKLKVASR
Trigger: TCTGGAGGCCACCTTGAGTTTTGTTGCCCAGAACAAAATCGATTCTCTGAACCTGGATGAGTTCTGCAACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CAA 72 bp TCTCTGGAGAACCCACTCCACAAGATCTTCCCCTCATaGATGAACAGTCTTTCTCCCTTCTTGGCATACACA +
Preference number: 6 (lower is better)
Translates to: SLENPLHKIFPS*MNSLSPFLAYT
Trigger: TGTGTATGCCAAGAAGGGAGAAAGACTGTTCATCAATGAGGGGAAGATCTTGTGGAGTGGGTTCTCCAGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063597.14
ENSMUST00000172826.2
CDS TCA 72 bp ATGCACTCCACAGACTCTGGTCTTGACTTCAGATCTTaGTCTTTGGCTGCTACTCCAAAATGGATAGGAAAG +
Preference number: 6 (lower is better)
Translates to: MHSTDSGLDFRS*SLAATPKWIGK
Trigger: CTTTCCTATCCATTTTGGAGTAGCAGCCAAAGATCAAGATCTGAAGTCAAGACCAGAGTCTGTGGAGTGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS TCA 72 bp GAAGTTATACCTGATGCACTCCACAGACTCTGGTCTTaGCTTCAGATCTTGATCTTTGGCTGCTACTCCAAA +
Preference number: 6 (lower is better)
Translates to: EVIPDALHRLWS*LQILIFGCYSK
Trigger: TTTGGAGTAGCAGCCAAAGATCAAGATCTGAAGTCAAGACCAGAGTCTGTGGAGTGCATCAGGTATAACTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CAA 72 bp TGCAGGTGGCAATTAAATGTTTCTTCCCAAAACTCTTaGGCAAAACCATTGTGGACAGACTTCCTGGGATGG +
Preference number: 6 (lower is better)
Translates to: CRWQLNVSSQNS*AKPLWTDFLGW
Trigger: CCATCCCAGGAAGTCTGTCCACAATGGTTTTGCCAAAGAGTTTTGGGAAGAAACATTTAATTGCCACCTGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2
CDS CCA 72 bp AATGTTTCTTCCCAAAACTCTTTGGCAAAACCATTGTaGACAGACTTCCTGGGATGGACTTTCTGTAGGAAT +
Preference number: 6 (lower is better)
Translates to: NVSSQNSLAKPL*TDFLGWTFCRN
Trigger: ATTCCTACAGAAAGTCCATCCCAGGAAGTCTGTCCACAATGGTTTTGCCAAAGAGTTTTGGGAAGAAACATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000063597.14
ENSMUST00000114847.9
ENSMUST00000172826.2