Pregenerated sensors for CASQ1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000007122Ensembl transcript IDs: ENSMUST00000003554.11, ENSMUST00000170700.2
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | AGAGAACTGGGCTGGGATCTAAGAAAAAGCAGCTCCTTTTCTCCTCGGAGAGGGCCCTGTAGTAGAGAATaGCCTAGTGTCCCAAGGAGC | + |
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Preference number: 2 (lower is better) Translates to: RELGWDLRKSSSFSPRRGPCSRE*PSVPRS Trigger: GCTCCTTGGGACACTAGGTCATTCTCTACTACAGGG...CCCTCTCCGAGGAGAAAAGGAGCTGCTTTTTCTTAGATCCCAGCCCAGTTCTCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| 3UTR-3UTR CCA 90 bp | ACCAGGACCTCAAGCACCCTGTATGCAGACCACAGTTGGCCCTGTAGTAGAGAAAGGGAAGGGCACAGATaGCAGAAAGGTACAACAAGT | + |
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Preference number: 2 (lower is better) Translates to: TRTSSTLYADHSWPCSREREGHR*QKGTTS Trigger: ACTTGTTGTACCTTTCTGCCATCTGTGCCCTTCCCT...TTCTCTACTACAGGGCCAACTGTGGTCTGCATACAGGGTGCTTGAGGTCCTGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| 3UTR TCA 72 bp | CTGTATGCAGACCACAGTTGGCCCTGTAGTAGAGAATaGCCTAGTGTCCCAAGGAGCCCAGGGAAGGGCACA | + |
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Preference number: 3 (lower is better) Translates to: LYADHSWPCSRE*PSVPRSPGKGT Trigger: TGTGCCCTTCCCTGGGCTCCTTGGGACACTAGGTCATTCTCTACTACAGGGCCAACTGTGGTCTGCATACAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| 3UTR-3UTR CAA 90 bp | AAGATTATAGCCCCTAACACAGTACCTCCCTTCCTCCTGGCCAGGGTCAGGACAGGGATAGAGAAGAGTTaGCAAACCGTTAAGTATGGG | + |
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Preference number: 3 (lower is better) Translates to: KIIAPNTVPPFLLARVRTGIEKS*QTVKYG Trigger: CCCATACTTAACGGTTTGCAAACTCTTCTCTATCCC...TGTCCTGACCCTGGCCAGGAGGAAGGGAGGTACTGTGTTAGGGGCTATAATCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS-3UTR TCA 90 bp | GTTGGCCCTGTAGTAGAGAATGACCTAGTGTCCCAAGGAGCCCAGGGAAGGGCACGTCATCCTCTGTGTTaGTCTCGCCCTCCAGCACGT | + |
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Preference number: 4 (lower is better) Translates to: VGPVVENDLVSQGAQGRARHPLC*SRPPAR Trigger: ACGTGCTGGAGGGCGAGATCAACACAGAGGATGACG...TGCCCTTCCCTGGGCTCCTTGGGACACTAGGTCATTCTCTACTACAGGGCCAAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS-3UTR GCA 90 bp | TGGGGAGTGGCGGGAAGAGAAACAGATAAGGTATGGGGGAAGAAGCAAGTCAGACCGCAGCTCGGACACTaGTCTGGCCCCCATCCTGTC | + |
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Preference number: 4 (lower is better) Translates to: WGVAGRETDKVWGKKQVRPQLGH*SGPHPV Trigger: GACAGGATGGGGGCCAGAGCAGTGTCCGAGCTGCGG...TCTGACTTGCTTCTTCCCCCATACCTTATCTGTTTCTCTTCCCGCCACTCCCCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS-3UTR CCA 90 bp | ACCAGGACCTCAAGCACCCTGTATGCAGACCACAGTTGGCCCTGTAGTAGAGAAAACCCATCTTCCCCCTaGACCCCTAACCTGGGCGTC | + |
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Preference number: 4 (lower is better) Translates to: TRTSSTLYADHSWPCSRENPSSP*TPNLGV Trigger: GACGCCCAGGTTAGGGGTCCAGGGGGAAGATGGGTT...TTCTCTACTACAGGGCCAACTGTGGTCTGCATACAGGGTGCTTGAGGTCCTGGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS-3UTR TCA 90 bp | TGGGATCTAAGAAAAAGCAGCTCCTTTTCTCCTCGGAGAGGGAGACCAGGACCTAGCTGCATCCTTCTCTaGGTCCACCAGGCCAAAGCC | + |
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Preference number: 4 (lower is better) Translates to: WDLRKSSSFSPRRGRPGPSCILL*VHQAKA Trigger: GGCTTTGGCCTGGTGGACTCAGAGAAGGATGCAGCT...AGGTCCTGGTCTCCCTCTCCGAGGAGAAAAGGAGCTGCTTTTTCTTAGATCCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS-3UTR GCA 90 bp | AGAGAACTGGGCTGGGATCTAAGAAAAAGCAGCTCCTTTTCTCCTCGGAGAGGGCAGTACAAACAGCAGTaGCAGCCGCAGCTCGGACAC | + |
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Preference number: 4 (lower is better) Translates to: RELGWDLRKSSSFSPRRGQYKQQ*QPQLGH Trigger: GTGTCCGAGCTGCGGCTGGCACTGCTGTTTGTACTG...CCCTCTCCGAGGAGAAAAGGAGCTGCTTTTTCTTAGATCCCAGCCCAGTTCTCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS-3UTR GCA 90 bp | ACCAGGACCTCAAGCACCCTGTATGCAGACCACAGTTGGCCCTGTAGTAGAGAAAGGGTTGATCTCCTGTaGTCCTCCACGAAGCTGACA | + |
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Preference number: 4 (lower is better) Translates to: TRTSSTLYADHSWPCSRERVDLL*SSTKLT Trigger: TGTCAGCTTCGTGGAGGAGCACAGGAGATCAACCCT...TTCTCTACTACAGGGCCAACTGTGGTCTGCATACAGGGTGCTTGAGGTCCTGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS-3UTR TCA 90 bp | TGGGGAGTGGCGGGAAGAGAAACAGATAAGGTATGGGGGAAGAAGCAAGTCAGATCTTGGCGTTCACATTaGTCACACGGTCCACACCGT | + |
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Preference number: 4 (lower is better) Translates to: WGVAGRETDKVWGKKQVRSWRSH*SHGPHR Trigger: ACGGTGTGGACCGTGTGATCAATGTGAACGCCAAGA...TCTGACTTGCTTCTTCCCCCATACCTTATCTGTTTCTCTTCCCGCCACTCCCCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS-3UTR TCA 90 bp | GTTGGCCCTGTAGTAGAGAATGACCTAGTGTCCCAAGGAGCCCAGGGAAGGGCATCCTATTTGTGGAGCTaGCAGGTCAATGTCAAAGGT | + |
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Preference number: 4 (lower is better) Translates to: VGPVVENDLVSQGAQGRASYLWS*QVNVKG Trigger: ACCTTTGACATTGACCTGTCAGCTCCACAAATAGGA...TGCCCTTCCCTGGGCTCCTTGGGACACTAGGTCATTCTCTACTACAGGGCCAAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS-3UTR GCA 90 bp | AAGATTATAGCCCCTAACACAGTACCTCCCTTCCTCCTGGCCAGGGTCAGGACAGGGATCTGCTTCCTCTaGAAAGGCGACAATGTGGAT | + |
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Preference number: 4 (lower is better) Translates to: KIIAPNTVPPFLLARVRTGICFL*KGDNVD Trigger: ATCCACATTGTCGCCTTTGCAGAGGAAGCAGATCCC...TGTCCTGACCCTGGCCAGGAGGAAGGGAGGTACTGTGTTAGGGGCTATAATCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS-3UTR GCA 90 bp | TGGGGAGTGGCGGGAAGAGAAACAGATAAGGTATGGGGGAAGAAGCAAGTCAGAATAGCCATCGGGATCTaGTTCCTCTGCAAAGGCGAC | + |
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Preference number: 4 (lower is better) Translates to: WGVAGRETDKVWGKKQVRIAIGI*FLCKGD Trigger: GTCGCCTTTGCAGAGGAAGCAGATCCCGATGGCTAT...TCTGACTTGCTTCTTCCCCCATACCTTATCTGTTTCTCTTCCCGCCACTCCCCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS-3UTR CCA 90 bp | TGGGATCTAAGAAAAAGCAGCTCCTTTTCTCCTCGGAGAGGGAGACCAGGACCTTCTCCTCTTCACTGTTaGGCTTGTCTGGGATGGTCA | + |
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Preference number: 4 (lower is better) Translates to: WDLRKSSSFSPRRGRPGPSPLHC*ACLGWS Trigger: TGACCATCCCAGACAAGCCCAACAGTGAAGAGGAGA...AGGTCCTGGTCTCCCTCTCCGAGGAGAAAAGGAGCTGCTTTTTCTTAGATCCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS-3UTR CCA 90 bp | AAGATTATAGCCCCTAACACAGTACCTCCCTTCCTCCTGGCCAGGGTCAGGACATTAGTCCTAGTTTCTTaGCCACAGCTGCATCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: KIIAPNTVPPFLLARVRTLVLVS*PQLHPS Trigger: AGAAGGATGCAGCTGTGGCCAAGAAACTAGGACTAA...TGTCCTGACCCTGGCCAGGAGGAAGGGAGGTACTGTGTTAGGGGCTATAATCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS-3UTR TCA 90 bp | TGGGATCTAAGAAAAAGCAGCTCCTTTTCTCCTCGGAGAGGGAGACCAGGACCTGGCTTTGTAATGCTCTaGGTCTTTGCTCTTGAAGTA | + |
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Preference number: 4 (lower is better) Translates to: WDLRKSSSFSPRRGRPGPGFVML*VFALEV Trigger: TACTTCAAGAGCAAAGACTCAGAGCATTACAAAGCC...AGGTCCTGGTCTCCCTCTCCGAGGAGAAAAGGAGCTGCTTTTTCTTAGATCCCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS-3UTR TCA 90 bp | GAGAAGAGTTTGCAAACCGTTAAGTATGGGGAGTGGCGGGAAGAGAAACAGATACTTGGGCCACAGCCTTaGGAGTCTCTAAGAACTCAT | + |
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Preference number: 4 (lower is better) Translates to: EKSLQTVKYGEWREEKQILGPQP*ESLRTH Trigger: ATGAGTTCTTAGAGACTCTCAAGGCTGTGGCCCAAG...TATCTGTTTCTCTTCCCGCCACTCCCCATACTTAACGGTTTGCAAACTCTTCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS-3UTR GCA 90 bp | AGCAAGTCAGATGAGAGAACTGGGCTGGGATCTAAGAAAAAGCAGCTCCTTTTCATCTCAAATTGTCTCTaGGAGGCCTTGTCGTCCTCG | + |
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Preference number: 4 (lower is better) Translates to: SKSDERTGLGSKKKQLLFISNCL*EALSSS Trigger: CGAGGACGACAAGGCCTCGCAGAGACAATTTGAGAT...GAAAAGGAGCTGCTTTTTCTTAGATCCCAGCCCAGTTCTCTCATCTGACTTGCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS-3UTR GCA 90 bp | TGGGATCTAAGAAAAAGCAGCTCCTTTTCTCCTCGGAGAGGGAGACCAGGACCTATATTCTCAAATGCCTaGAGCTCTCGTTCACCTTCA | + |
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Preference number: 4 (lower is better) Translates to: WDLRKSSSFSPRRGRPGPIFSNA*SSRSPS Trigger: TGAAGGTGAACGAGAGCTGCAGGCATTTGAGAATAT...AGGTCCTGGTCTCCCTCTCCGAGGAGAAAAGGAGCTGCTTTTTCTTAGATCCCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS-3UTR CCA 90 bp | GAGAAGAGTTTGCAAACCGTTAAGTATGGGGAGTGGCGGGAAGAGAAACAGATAGCAAAGGCGACAATGTaGATTCCATCCAGGTCATCC | + |
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Preference number: 4 (lower is better) Translates to: EKSLQTVKYGEWREEKQIAKATM*IPSRSS Trigger: GGATGACCTGGATGGAATCCACATTGTCGCCTTTGC...TATCTGTTTCTCTTCCCGCCACTCCCCATACTTAACGGTTTGCAAACTCTTCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS-3UTR CCA 90 bp | CCTGGCCAGGGTCAGGACAGTGAGAGAGGTTTAAGATTTGAGAAATGGGATAGATTGTCTTCTAAGACTTaGGCTGCTAACTCCAGGATT | + |
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Preference number: 4 (lower is better) Translates to: PGQGQDSERGLRFEKWDRLSSKT*AANSRI Trigger: AATCCTGGAGTTAGCAGCCCAAGTCTTAGAAGACAA...TCTATCCCATTTCTCAAATCTTAAACCTCTCTCACTGTCCTGACCCTGGCCAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS-3UTR GCA 90 bp | GAGAAGAGTTTGCAAACCGTTAAGTATGGGGAGTGGCGGGAAGAGAAACAGATATTCAATATTCTCAAATaGCTGCAGCTCTCGTTCACC | + |
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Preference number: 4 (lower is better) Translates to: EKSLQTVKYGEWREEKQIFNILK*LQLSFT Trigger: GGTGAACGAGAGCTGCAGGCATTTGAGAATATTGAA...TATCTGTTTCTCTTCCCGCCACTCCCCATACTTAACGGTTTGCAAACTCTTCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS CCA 90 bp | CGGTCCACACCGTCGTACTCAGGGAAGTCCAACCCATCTTCCCCCTaGACCCCTAACCTGGGCGTCCCTAGCACCAGTACAAACAGCAGT | + |
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Preference number: 5 (lower is better) Translates to: RSTPSYSGKSNPSSP*TPNLGVPSTSTNSS Trigger: ACTGCTGTTTGTACTGGTGCTAGGGACGCCCAGGTTAGGGGTCCAGGGGGAAGATGGGTTGGACTTCCCTGAGTACGACGGTGTGGACCG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000003554.11 ENSMUST00000170700.2 |
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| CDS-3UTR CAA 90 bp | GTTGGCCCTGTAGTAGAGAATGACCTAGTGTCCCAAGGAGCCCAGGGAAGGGCACTCCTCCATCTCAAATaGTCTCTGCGAGGCCTTGTC | + |
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Preference number: 5 (lower is better) Translates to: VGPVVENDLVSQGAQGRALLHLK*SLRGLV Trigger: GACAAGGCCTCGCAGAGACAATTTGAGATGGAGGAG...TGCCCTTCCCTGGGCTCCTTGGGACACTAGGTCATTCTCTACTACAGGGCCAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS-3UTR CAA 90 bp | GTTGGCCCTGTAGTAGAGAATGACCTAGTGTCCCAAGGAGCCCAGGGAAGGGCAAGCTTCTTTGCCACCTaGCTGTCGAAGGTAGCGAAG | + |
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Preference number: 5 (lower is better) Translates to: VGPVVENDLVSQGAQGRASFFAT*LSKVAK Trigger: CTTCGCTACCTTCGACAGCAAGGTGGCAAAGAAGCT...TGCCCTTCCCTGGGCTCCTTGGGACACTAGGTCATTCTCTACTACAGGGCCAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS-3UTR CAA 90 bp | GTTGGCCCTGTAGTAGAGAATGACCTAGTGTCCCAAGGAGCCCAGGGAAGGGCAATCTCCTCTTCACTGTaGGGCTTGTCTGGGATGGTC | + |
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Preference number: 5 (lower is better) Translates to: VGPVVENDLVSQGAQGRAISSSL*GLSGMV Trigger: GACCATCCCAGACAAGCCCAACAGTGAAGAGGAGAT...TGCCCTTCCCTGGGCTCCTTGGGACACTAGGTCATTCTCTACTACAGGGCCAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS-3UTR CAA 90 bp | GTTGGCCCTGTAGTAGAGAATGACCTAGTGTCCCAAGGAGCCCAGGGAAGGGCATCAGTTTCCTCAGGGTaGATCTCCTGTGCTCCTCCA | + |
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Preference number: 5 (lower is better) Translates to: VGPVVENDLVSQGAQGRASVSSG*ISCAPP Trigger: TGGAGGAGCACAGGAGATCAACCCTGAGGAAACTGA...TGCCCTTCCCTGGGCTCCTTGGGACACTAGGTCATTCTCTACTACAGGGCCAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS-3UTR CAA 90 bp | GTTGGCCCTGTAGTAGAGAATGACCTAGTGTCCCAAGGAGCCCAGGGAAGGGCAGTTCTCAGTGTTGTCTaGGGCCACAGCCTTGAGAGT | + |
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Preference number: 5 (lower is better) Translates to: VGPVVENDLVSQGAQGRAVLSVV*GHSLES Trigger: ACTCTCAAGGCTGTGGCCCAAGACAACACTGAGAAC...TGCCCTTCCCTGGGCTCCTTGGGACACTAGGTCATTCTCTACTACAGGGCCAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS-3UTR CAA 90 bp | GTTGGCCCTGTAGTAGAGAATGACCTAGTGTCCCAAGGAGCCCAGGGAAGGGCATCTTGGGCCACAGCCTaGAGAGTCTCTAAGAACTCA | + |
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Preference number: 5 (lower is better) Translates to: VGPVVENDLVSQGAQGRASWATA*RVSKNS Trigger: TGAGTTCTTAGAGACTCTCAAGGCTGTGGCCCAAGA...TGCCCTTCCCTGGGCTCCTTGGGACACTAGGTCATTCTCTACTACAGGGCCAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS-3UTR CAA 90 bp | TGGGGAGTGGCGGGAAGAGAAACAGATAAGGTATGGGGGAAGAAGCAAGTCAGATCGTCATCCTCTGTGTaGATCTCGCCCTCCAGCACG | + |
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Preference number: 5 (lower is better) Translates to: WGVAGRETDKVWGKKQVRSSSSV*ISPSST Trigger: CGTGCTGGAGGGCGAGATCAACACAGAGGATGACGA...TCTGACTTGCTTCTTCCCCCATACCTTATCTGTTTCTCTTCCCGCCACTCCCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS-3UTR CAA 90 bp | TGGGATCTAAGAAAAAGCAGCTCCTTTTCTCCTCGGAGAGGGAGACCAGGACCTTTCTTGGCGTTCACATaGATCACACGGTCCACACCG | + |
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Preference number: 5 (lower is better) Translates to: WDLRKSSSFSPRRGRPGPFLAFT*ITRSTP Trigger: CGGTGTGGACCGTGTGATCAATGTGAACGCCAAGAA...AGGTCCTGGTCTCCCTCTCCGAGGAGAAAAGGAGCTGCTTTTTCTTAGATCCCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS-3UTR CAA 90 bp | ACCAGGACCTCAAGCACCCTGTATGCAGACCACAGTTGGCCCTGTAGTAGAGAACCAAAGCCAACACCCTaGTCTTCTAAGACTTGGGCT | + |
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Preference number: 5 (lower is better) Translates to: TRTSSTLYADHSWPCSREPKPTP*SSKTWA Trigger: AGCCCAAGTCTTAGAAGACAAGGGTGTTGGCTTTGG...TTCTCTACTACAGGGCCAACTGTGGTCTGCATACAGGGTGCTTGAGGTCCTGGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS-3UTR CAA 90 bp | ACCAGGACCTCAAGCACCCTGTATGCAGACCACAGTTGGCCCTGTAGTAGAGAAGTTAGTCCTAGTTTCTaGGCCACAGCTGCATCCTTC | + |
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Preference number: 5 (lower is better) Translates to: TRTSSTLYADHSWPCSREVSPSF*ATAASF Trigger: GAAGGATGCAGCTGTGGCCAAGAAACTAGGACTAAC...TTCTCTACTACAGGGCCAACTGTGGTCTGCATACAGGGTGCTTGAGGTCCTGGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS-3UTR CAA 90 bp | CCTGGCCAGGGTCAGGACAGTGAGAGAGGTTTAAGATTTGAGAAATGGGATAGATCGGGGTTCTCAGTGTaGTCTTGGGCCACAGCCTTG | + |
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Preference number: 5 (lower is better) Translates to: PGQGQDSERGLRFEKWDRSGFSV*SWATAL Trigger: CAAGGCTGTGGCCCAAGACAACACTGAGAACCCCGA...TCTATCCCATTTCTCAAATCTTAAACCTCTCTCACTGTCCTGACCCTGGCCAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS-3UTR CAA 90 bp | AGCAAGTCAGATGAGAGAACTGGGCTGGGATCTAAGAAAAAGCAGCTCCTTTTCTCAGAGTCAGCTTCTTaGCCACCTTGCTGTCGAAGG | + |
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Preference number: 5 (lower is better) Translates to: SKSDERTGLGSKKKQLLFSESAS*PPCCRR Trigger: CCTTCGACAGCAAGGTGGCAAAGAAGCTGACTCTGA...GAAAAGGAGCTGCTTTTTCTTAGATCCCAGCCCAGTTCTCTCATCTGACTTGCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS-3UTR CAA 90 bp | AGCAAGTCAGATGAGAGAACTGGGCTGGGATCTAAGAAAAAGCAGCTCCTTTTCTCTTCACTGTTGGGCTaGTCTGGGATGGTCATAGGC | + |
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Preference number: 5 (lower is better) Translates to: SKSDERTGLGSKKKQLLFSSLLG*SGMVIG Trigger: GCCTATGACCATCCCAGACAAGCCCAACAGTGAAGA...GAAAAGGAGCTGCTTTTTCTTAGATCCCAGCCCAGTTCTCTCATCTGACTTGCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS-3UTR CAA 90 bp | CCTGGCCAGGGTCAGGACAGTGAGAGAGGTTTAAGATTTGAGAAATGGGATAGATCGGCGTCTGTAACATaGACAACTCCTATTTGTGGA | + |
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Preference number: 5 (lower is better) Translates to: PGQGQDSERGLRFEKWDRSASVT*TTPICG Trigger: TCCACAAATAGGAGTTGTCAATGTTACAGACGCCGA...TCTATCCCATTTCTCAAATCTTAAACCTCTCTCACTGTCCTGACCCTGGCCAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS CCA 72 bp | CCGTCGTACTCAGGGAAGTCCAACCCATCTTCCCCCTaGACCCCTAACCTGGGCGTCCCTAGCACCAGTACA | + |
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Preference number: 6 (lower is better) Translates to: PSYSGKSNPSSP*TPNLGVPSTST Trigger: TGTACTGGTGCTAGGGACGCCCAGGTTAGGGGTCCAGGGGGAAGATGGGTTGGACTTCCCTGAGTACGACGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000003554.11 ENSMUST00000170700.2 |
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| CDS CCA 72 bp | GGAAGTCCAACCCATCTTCCCCCTGGACCCCTAACCTaGGCGTCCCTAGCACCAGTACAAACAGCAGTGCCA | + |
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Preference number: 6 (lower is better) Translates to: GSPTHLPPGPLT*ASLAPVQTAVP Trigger: TGGCACTGCTGTTTGTACTGGTGCTAGGGACGCCCAGGTTAGGGGTCCAGGGGGAAGATGGGTTGGACTTCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000003554.11 ENSMUST00000170700.2 |
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| CDS CAA 72 bp | TCGTCATCGTCGTCATCGTCGTCGTCATCCTCTGTGTaGATCTCGCCCTCCAGCACGTCCTCCAGCCAGTCC | + |
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Preference number: 6 (lower is better) Translates to: SSSSSSSSSSSV*ISPSSTSSSQS Trigger: GGACTGGCTGGAGGACGTGCTGGAGGGCGAGATCAACACAGAGGATGACGACGACGATGACGACGATGACGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS CAA 90 bp | GATCTCCTGTGCTCCTCCACGAAGCTGACAATCTCCTCTTCACTGTaGGGCTTGTCTGGGATGGTCATAGGCTCTTCCATGAAGGCCTCG | + |
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Preference number: 6 (lower is better) Translates to: DLLCSSTKLTISSSL*GLSGMVIGSSMKAS Trigger: CGAGGCCTTCATGGAAGAGCCTATGACCATCCCAGACAAGCCCAACAGTGAAGAGGAGATTGTCAGCTTCGTGGAGGAGCACAGGAGATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS TCA 72 bp | GGTCGGGGTTCTCAGTGTTGTCTTGGGCCACAGCCTTaGGAGTCTCTAAGAACTCATAGCCATCGGGATCTG | + |
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Preference number: 6 (lower is better) Translates to: GRGSQCCLGPQP*ESLRTHSHRDL Trigger: CAGATCCCGATGGCTATGAGTTCTTAGAGACTCTCAAGGCTGTGGCCCAAGACAACACTGAGAACCCCGACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS CAA 72 bp | TCCACGAAGCTGACAATCTCCTCTTCACTGTTGGGCTaGTCTGGGATGGTCATAGGCTCTTCCATGAAGGCC | + |
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Preference number: 6 (lower is better) Translates to: STKLTISSSLLG*SGMVIGSSMKA Trigger: GGCCTTCATGGAAGAGCCTATGACCATCCCAGACAAGCCCAACAGTGAAGAGGAGATTGTCAGCTTCGTGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS CAA 72 bp | TGCTCCTCCACGAAGCTGACAATCTCCTCTTCACTGTaGGGCTTGTCTGGGATGGTCATAGGCTCTTCCATG | + |
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Preference number: 6 (lower is better) Translates to: CSSTKLTISSSL*GLSGMVIGSSM Trigger: CATGGAAGAGCCTATGACCATCCCAGACAAGCCCAACAGTGAAGAGGAGATTGTCAGCTTCGTGGAGGAGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS CCA 72 bp | ACCAGGCCAAAGCCAACACCCTTGTCTTCTAAGACTTaGGCTGCTAACTCCAGGATTAGCTCCTCCATCTCA | + |
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Preference number: 6 (lower is better) Translates to: TRPKPTPLSSKT*AANSRISSSIS Trigger: TGAGATGGAGGAGCTAATCCTGGAGTTAGCAGCCCAAGTCTTAGAAGACAAGGGTGTTGGCTTTGGCCTGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS CCA 72 bp | CATAAACGCTGTCTTCTTCAGTTAGTCCTAGTTTCTTaGCCACAGCTGCATCCTTCTCTGAGTCCACCAGGC | + |
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Preference number: 6 (lower is better) Translates to: HKRCLLQLVLVS*PQLHPSLSPPG Trigger: GCCTGGTGGACTCAGAGAAGGATGCAGCTGTGGCCAAGAAACTAGGACTAACTGAAGAAGACAGCGTTTATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS CAA 72 bp | TCAATCCAGATGATACTGAGGTCGGGGTTCTCAGTGTaGTCTTGGGCCACAGCCTTGAGAGTCTCTAAGAAC | + |
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Preference number: 6 (lower is better) Translates to: SIQMILRSGFSV*SWATALRVSKN Trigger: GTTCTTAGAGACTCTCAAGGCTGTGGCCCAAGACAACACTGAGAACCCCGACCTCAGTATCATCTGGATTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS CAA 90 bp | TCCTCGTTATCCATCTCCATCCATATGCTGTCGGCGTCTGTAACATaGACAACTCCTATTTGTGGAGCTGACAGGTCAATGTCAAAGGTC | + |
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Preference number: 6 (lower is better) Translates to: SSLSISIHMLSASVT*TTPICGADRSMSKV Trigger: GACCTTTGACATTGACCTGTCAGCTCCACAAATAGGAGTTGTCAATGTTACAGACGCCGACAGCATATGGATGGAGATGGATAACGAGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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| CDS CAA 72 bp | TCCATCTCCATCCATATGCTGTCGGCGTCTGTAACATaGACAACTCCTATTTGTGGAGCTGACAGGTCAATG | + |
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Preference number: 6 (lower is better) Translates to: SISIHMLSASVT*TTPICGADRSM Trigger: CATTGACCTGTCAGCTCCACAAATAGGAGTTGTCAATGTTACAGACGCCGACAGCATATGGATGGAGATGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003554.11 |
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