RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CASP8 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026029

Ensembl transcript IDs: ENSMUST00000027189.15, ENSMUST00000165549.8, ENSMUST00000190213.2, ENSMUST00000191201.7

Found 93 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TTTCAAGACAAGCTTTCTCTGTGTAGCCCTGGCTATCTCAGAACTTaGTATGTAGAGCAGGTTGGCTTTGAACTCAGAGATCCTCCTGCC +
Preference number: 1 (lower is better)
Translates to: FQDKLSLCSPGYLRT*YVEQVGFELRDPPA
Trigger: GGCAGGAGGATCTCTGAGTTCAAAGCCAACCTGCTCTACATAGCAAGTTCTGAGATAGCCAGGGCTACACAGAGAAAGCTTGTCTTGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027189.15
3UTR CAA 90 bp TGTCTCCAGAGTGCTGAGATTAAAGGTGAACCCATGGAAGCCAATTaGTATTGCCCAACTATTCTTGGGAGAGGGACCTGCCTTGGAGTG +
Preference number: 2 (lower is better)
Translates to: CLQSAEIKGEPMEAN*YCPTILGRGTCLGV
Trigger: CACTCCAAGGCAGGTCCCTCTCCCAAGAATAGTTGGGCAATACAAATTGGCTTCCATGGGTTCACCTTTAATCTCAGCACTCTGGAGACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027189.15
3UTR-3UTR CCA 90 bp AGTGCTGAGATTAAAGGTGAACCCATGGAAGCCAATTTGTATTGCCCAACTATTGAGAGGGACCTGCCTTaGAGTGTGATTGGCCTACCA +
Preference number: 2 (lower is better)
Translates to: SAEIKGEPMEANLYCPTIERDLP*SVIGLP
Trigger: TGGTAGGCCAATCACACTCCAAGGCAGGTCCCTCTC...AATAGTTGGGCAATACAAATTGGCTTCCATGGGTTCACCTTTAATCTCAGCACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027189.15
3UTR-3UTR CCA 90 bp AAGCTTTCTCTGTGTAGCCCTGGCTATCTCAGAACTTGCTATGTAGAGCAGGTTTTAAAGGTGAACCCATaGAAGCCAATTTGTATTGCC +
Preference number: 2 (lower is better)
Translates to: KLSLCSPGYLRTCYVEQVLKVNP*KPICIA
Trigger: GGCAATACAAATTGGCTTCCATGGGTTCACCTTTAA...AACCTGCTCTACATAGCAAGTTCTGAGATAGCCAGGGCTACACAGAGAAAGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027189.15
3UTR GCA 72 bp CACCCCATTCTGCTGACTCACCTTCAGCAGTTAACTTaGCCCAGGTCCCTGCTCCCGTCATTCACCCCCTCT +
Preference number: 3 (lower is better)
Translates to: HPILLTHLQQLT*PRSLLPSFTPS
Trigger: AGAGGGGGTGAATGACGGGAGCAGGGACCTGGGGCAAGTTAACTGCTGAAGGTGAGTCAGCAGAATGGGGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027189.15
3UTR CCA 72 bp GTATTGCCCAACTATTCTTGGGAGAGGGACCTGCCTTaGAGTGTGATTGGCCTACCAAAGGTCGCTCCATTT +
Preference number: 3 (lower is better)
Translates to: VLPNYSWERDLP*SVIGLPKVAPF
Trigger: AAATGGAGCGACCTTTGGTAGGCCAATCACACTCCAAGGCAGGTCCCTCTCCCAAGAATAGTTGGGCAATAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027189.15
3UTR TCA 72 bp CTATCTCAGAACTTGCTATGTAGAGCAGGTTGGCTTTaGACTCAGAGATCCTCCTGCCTCTGTCTCCAGAGT +
Preference number: 3 (lower is better)
Translates to: LSQNLLCRAGWL*TQRSSCLCLQS
Trigger: ACTCTGGAGACAGAGGCAGGAGGATCTCTGAGTTCAAAGCCAACCTGCTCTACATAGCAAGTTCTGAGATAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027189.15
3UTR CCA 72 bp TCTGTCTCCAGAGTGCTGAGATTAAAGGTGAACCCATaGAAGCCAATTTGTATTGCCCAACTATTCTTGGGA +
Preference number: 3 (lower is better)
Translates to: SVSRVLRLKVNP*KPICIAQLFLG
Trigger: TCCCAAGAATAGTTGGGCAATACAAATTGGCTTCCATGGGTTCACCTTTAATCTCAGCACTCTGGAGACAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027189.15
CDS-3UTR TCA 90 bp CTCAGAGATCCTCCTGCCTCTGTCTCCAGAGTGCTGAGATTAAAGGTGAACCCACCAGCAGGCTCTTGTTaGCCTGGTCACAGATTGATT +
Preference number: 4 (lower is better)
Translates to: LRDPPASVSRVLRLKVNPPAGSC*PGHRLI
Trigger: AATCAATCTGTGACCAGGTCAACAAGAGCCTGCTGG...TGGGTTCACCTTTAATCTCAGCACTCTGGAGACAGAGGCAGGAGGATCTCTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027189.15
CDS-3UTR CCA 90 bp GATCCTCCTGCCTCTGTCTCCAGAGTGCTGAGATTAAAGGTGAACCCATGGAAGCTCCTGCTTCTTGTGTaGGATGTAGTCCAAGCACAG +
Preference number: 4 (lower is better)
Translates to: DPPASVSRVLRLKVNPWKLLLLV*DVVQAQ
Trigger: CTGTGCTTGGACTACATCCCACACAAGAAGCAGGAG...CTTCCATGGGTTCACCTTTAATCTCAGCACTCTGGAGACAGAGGCAGGAGGATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027189.15
CDS-3UTR TCA 90 bp TTAGACTCATCCACACAAAAGTGCACAGATAAGCCATGTGAACTGTGGAGAGCACCAAGCACAGGAACTTaGGGGCAGCCAGGTCTTCAC +
Preference number: 4 (lower is better)
Translates to: LDSSTQKCTDKPCELWRAPSTGT*GQPGLH
Trigger: GTGAAGACCTGGCTGCCCTCAAGTTCCTGTGCTTGG...TGCTCTCCACAGTTCACATGGCTTATCTGTGCACTTTTGTGTGGATGAGTCTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR TCA 90 bp CTCAGAGATCCTCCTGCCTCTGTCTCCAGAGTGCTGAGATTAAAGGTGAACCCACATCTCATCCAAAACTaGAGGTGGCAACTCTTCCCT +
Preference number: 4 (lower is better)
Translates to: LRDPPASVSRVLRLKVNPHLIQN*RWQLFP
Trigger: AGGGAAGAGTTGCCACCTTCAGTTTTGGATGAGATG...TGGGTTCACCTTTAATCTCAGCACTCTGGAGACAGAGGCAGGAGGATCTCTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027189.15
CDS-3UTR TCA 90 bp CTGACTCACCTTCAGCAGTTAACTTGCCCCAGGTCCCTGCTCCCGTCATTCACCATAGGATACAGCAGATaGAGCAGTCTTTGTTCTTGT +
Preference number: 4 (lower is better)
Translates to: LTHLQQLTCPRSLLPSFTIGYSR*SSLCSC
Trigger: ACAAGAACAAAGACTGCTTCATCTGCTGTATCCTAT...GGTGAATGACGGGAGCAGGGACCTGGGGCAAGTTAACTGCTGAAGGTGAGTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027189.15
CDS-3UTR TCA 90 bp GATCCTCCTGCCTCTGTCTCCAGAGTGCTGAGATTAAAGGTGAACCCATGGAAGACAGTTCCGCCATTTTaGGGCTCATCTCATCCAAAA +
Preference number: 4 (lower is better)
Translates to: DPPASVSRVLRLKVNPWKTVPPF*GSSHPK
Trigger: TTTTGGATGAGATGAGCCTCAAAATGGCGGAACTGT...CTTCCATGGGTTCACCTTTAATCTCAGCACTCTGGAGACAGAGGCAGGAGGATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027189.15
CDS-3UTR CCA 90 bp TCATCCACACAAAAGTGCACAGATAAGCCATGTGAACTGTGGAGAGCACACATCTCCCACCGACTGATGTaGAAAAGCAGCTCTTTCAGG +
Preference number: 4 (lower is better)
Translates to: SSTQKCTDKPCELWRAHISHRLM*KSSSFR
Trigger: CCTGAAAGAGCTGCTTTTCCACATCAGTCGGTGGGA...GATGTGTGCTCTCCACAGTTCACATGGCTTATCTGTGCACTTTTGTGTGGATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR CCA 90 bp ACTCATCCACACAAAAGTGCACAGATAAGCCATGTGAACTGTGGAGAGCACACATCCCACCGACTGATGTaGAAAAGCAGCTCTTTCAGG +
Preference number: 4 (lower is better)
Translates to: THPHKSAQISHVNCGEHTSHRLM*KSSSFR
Trigger: CCTGAAAGAGCTGCTTTTCCACATCAGTCGGTGGGA...TGTGTGCTCTCCACAGTTCACATGGCTTATCTGTGCACTTTTGTGTGGATGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR TCA 90 bp TTAGACTCATCCACACAAAAGTGCACAGATAAGCCATGTGAACTGTGGAGAGCACAGGCTCTGGCAAAGTaGCTGAATATACCAGGTTCC +
Preference number: 4 (lower is better)
Translates to: LDSSTQKCTDKPCELWRAQALAK*LNIPGS
Trigger: GGAACCTGGTATATTCAGTCACTTTGCCAGAGCCTG...TGCTCTCCACAGTTCACATGGCTTATCTGTGCACTTTTGTGTGGATGAGTCTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
3UTR CAA 72 bp AGTGCTGAGATTAAAGGTGAACCCATGGAAGCCAATTaGTATTGCCCAACTATTCTTGGGAGAGGGACCTGC +
Preference number: 4 (lower is better)
Translates to: SAEIKGEPMEAN*YCPTILGRGTC
Trigger: GCAGGTCCCTCTCCCAAGAATAGTTGGGCAATACAAATTGGCTTCCATGGGTTCACCTTTAATCTCAGCACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027189.15
CDS-3UTR TCA 90 bp TCATCCACACAAAAGTGCACAGATAAGCCATGTGAACTGTGGAGAGCACACATCCTTCCTTGGCAAGCCTaGATGAAAAAGATCTTGGGT +
Preference number: 4 (lower is better)
Translates to: SSTQKCTDKPCELWRAHILPWQA*MKKILG
Trigger: ACCCAAGATCTTTTTCATTCAGGCTTGCCAAGGAAG...GATGTGTGCTCTCCACAGTTCACATGGCTTATCTGTGCACTTTTGTGTGGATGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR TCA 90 bp AAGCTTTCTCTGTGTAGCCCTGGCTATCTCAGAACTTGCTATGTAGAGCAGGTTCTCTGGCAAAGTGACTaGATATACCAGGTTCCATTC +
Preference number: 4 (lower is better)
Translates to: KLSLCSPGYLRTCYVEQVLWQSD*IYQVPF
Trigger: GAATGGAACCTGGTATATTCAGTCACTTTGCCAGAG...AACCTGCTCTACATAGCAAGTTCTGAGATAGCCAGGGCTACACAGAGAAAGCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027189.15
CDS-3UTR CCA 90 bp TCATCCACACAAAAGTGCACAGATAAGCCATGTGAACTGTGGAGAGCACACATCTCAGGCACTCCTTTCTaGAAGTTACTTCCTTGGCAA +
Preference number: 4 (lower is better)
Translates to: SSTQKCTDKPCELWRAHISGTPF*KLLPWQ
Trigger: TTGCCAAGGAAGTAACTTCCAGAAAGGAGTGCCTGA...GATGTGTGCTCTCCACAGTTCACATGGCTTATCTGTGCACTTTTGTGTGGATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR CCA 90 bp AGAGTGCTGAGATTAAAGGTGAACCCATGGAAGCCAATTTGTATTGCCCAACTATGTGAAGGTGGGCTGTaGCATCTGCTTTCCCTTGTT +
Preference number: 4 (lower is better)
Translates to: RVLRLKVNPWKPICIAQLCEGGL*HLLSLV
Trigger: AACAAGGGAAAGCAGATGCCACAGCCCACCTTCACA...TAGTTGGGCAATACAAATTGGCTTCCATGGGTTCACCTTTAATCTCAGCACTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027189.15
CDS-3UTR TCA 90 bp AGAAAAGAGGCCATGTATTTGAAATTGGAACATAACAAAGAAGGGTTTAAAGGGCCAAGCACAGGAACTTaGGGGCAGCCAGGTCTTCAC +
Preference number: 4 (lower is better)
Translates to: RKEAMYLKLEHNKEGFKGPSTGT*GQPGLH
Trigger: GTGAAGACCTGGCTGCCCTCAAGTTCCTGTGCTTGG...CCCTTTAAACCCTTCTTTGTTATGTTCCAATTTCAAATACATGGCCTCTTTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR TCA 90 bp CAGGTTATATTTAGAAATGTGTGTGTGTGTGTGTGTGTGTGTATGTATGTGTGTGCAGGTCCCACCGACTaGTGTGGAAAAGCAGCTCTT +
Preference number: 4 (lower is better)
Translates to: QVIFRNVCVCVCVCMYVCAGPTD*CGKAAL
Trigger: AAGAGCTGCTTTTCCACATCAGTCGGTGGGACCTGC...ACACACATACATACACACACACACACACACACACACATTTCTAAATATAACCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR TCA 90 bp TTAGACTCATCCACACAAAAGTGCACAGATAAGCCATGTGAACTGTGGAGAGCAGGCACTTTGAACCAGTaGAGTAAGATGTCAGGTCAT +
Preference number: 4 (lower is better)
Translates to: LDSSTQKCTDKPCELWRAGTLNQ*SKMSGH
Trigger: ATGACCTGACATCTTACTTCACTGGTTCAAAGTGCC...TGCTCTCCACAGTTCACATGGCTTATCTGTGCACTTTTGTGTGGATGAGTCTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR CCA 90 bp TTAGACTCATCCACACAAAAGTGCACAGATAAGCCATGTGAACTGTGGAGAGCATCAGGCACTCCTTTCTaGAAGTTACTTCCTTGGCAA +
Preference number: 4 (lower is better)
Translates to: LDSSTQKCTDKPCELWRASGTPF*KLLPWQ
Trigger: TTGCCAAGGAAGTAACTTCCAGAAAGGAGTGCCTGA...TGCTCTCCACAGTTCACATGGCTTATCTGTGCACTTTTGTGTGGATGAGTCTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR TCA 90 bp CAGTTAATGAGAAAAGAGGCCATGTATTTGAAATTGGAACATAACAAAGAAGGGGCAGGTCCCACCGACTaGTGTGGAAAAGCAGCTCTT +
Preference number: 4 (lower is better)
Translates to: QLMRKEAMYLKLEHNKEGAGPTD*CGKAAL
Trigger: AAGAGCTGCTTTTCCACATCAGTCGGTGGGACCTGC...CCCTTCTTTGTTATGTTCCAATTTCAAATACATGGCCTCTTTTCTCATTAACTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR GCA 90 bp AGAGTGCTGAGATTAAAGGTGAACCCATGGAAGCCAATTTGTATTGCCCAACTATCCCAGCAGAAAGTCTaGCTCATCCGGAATATAGTT +
Preference number: 4 (lower is better)
Translates to: RVLRLKVNPWKPICIAQLSQQKV*LIRNIV
Trigger: AACTATATTCCGGATGAGGCAGACTTTCTGCTGGGA...TAGTTGGGCAATACAAATTGGCTTCCATGGGTTCACCTTTAATCTCAGCACTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027189.15
CDS-3UTR TCA 90 bp AATAAATTAGACTCATCCACACAAAAGTGCACAGATAAGCCATGTGAACTGTGGCATCTCATCCAAAACTaGAGGTGGCAACTCTTCCCT +
Preference number: 4 (lower is better)
Translates to: NKLDSSTQKCTDKPCELWHLIQN*RWQLFP
Trigger: AGGGAAGAGTTGCCACCTTCAGTTTTGGATGAGATG...CCACAGTTCACATGGCTTATCTGTGCACTTTTGTGTGGATGAGTCTAATTTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR TCA 90 bp TTAGACTCATCCACACAAAAGTGCACAGATAAGCCATGTGAACTGTGGAGAGCAATAGGATACAGCAGATaGAGCAGTCTTTGTTCTTGT +
Preference number: 4 (lower is better)
Translates to: LDSSTQKCTDKPCELWRAIGYSR*SSLCSC
Trigger: ACAAGAACAAAGACTGCTTCATCTGCTGTATCCTAT...TGCTCTCCACAGTTCACATGGCTTATCTGTGCACTTTTGTGTGGATGAGTCTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR CCA 90 bp AGGTTATATTTAGAAATGTGTGTGTGTGTGTGTGTGTGTGTATGTATGTGTGTGCTCCTGCTTCTTGTGTaGGATGTAGTCCAAGCACAG +
Preference number: 4 (lower is better)
Translates to: RLYLEMCVCVCVCVCMCVLLLLV*DVVQAQ
Trigger: CTGTGCTTGGACTACATCCCACACAAGAAGCAGGAG...CACACACATACATACACACACACACACACACACACACATTTCTAAATATAACCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR CCA 90 bp AGAGTGCTGAGATTAAAGGTGAACCCATGGAAGCCAATTTGTATTGCCCAACTACCTTCTAGAATCTCGTaGATTTCATTTGCAGTGCAG +
Preference number: 4 (lower is better)
Translates to: RVLRLKVNPWKPICIAQLPSRIS*ISFAVQ
Trigger: CTGCACTGCAAATGAAATCCACGAGATTCTAGAAGG...TAGTTGGGCAATACAAATTGGCTTCCATGGGTTCACCTTTAATCTCAGCACTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027189.15
CDS-3UTR CCA 90 bp CAGGTTATATTTAGAAATGTGTGTGTGTGTGTGTGTGTGTGTATGTATGTGTGTTGTGAAGGTGGGCTGTaGCATCTGCTTTCCCTTGTT +
Preference number: 4 (lower is better)
Translates to: QVIFRNVCVCVCVCMYVCCEGGL*HLLSLV
Trigger: AACAAGGGAAAGCAGATGCCACAGCCCACCTTCACA...ACACACATACATACACACACACACACACACACACACATTTCTAAATATAACCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR TCA 90 bp AATAAATTAGACTCATCCACACAAAAGTGCACAGATAAGCCATGTGAACTGTGGGGCACTTTGAACCAGTaGAGTAAGATGTCAGGTCAT +
Preference number: 4 (lower is better)
Translates to: NKLDSSTQKCTDKPCELWGTLNQ*SKMSGH
Trigger: ATGACCTGACATCTTACTTCACTGGTTCAAAGTGCC...CCACAGTTCACATGGCTTATCTGTGCACTTTTGTGTGGATGAGTCTAATTTATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR TCA 90 bp CAGGTTATATTTAGAAATGTGTGTGTGTGTGTGTGTGTGTGTATGTATGTGTGTCAGGGAAGGGCACTTTaGACCAGTGAAGTAAGATGT +
Preference number: 4 (lower is better)
Translates to: QVIFRNVCVCVCVCMYVCQGRAL*TSEVRC
Trigger: ACATCTTACTTCACTGGTTCAAAGTGCCCTTCCCTG...ACACACATACATACACACACACACACACACACACACATTTCTAAATATAACCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR GCA 90 bp AGGTTATATTTAGAAATGTGTGTGTGTGTGTGTGTGTGTGTATGTATGTGTGTGTCAGGAAAGACAGATTaGCTTCCTCCAACATCCCCT +
Preference number: 4 (lower is better)
Translates to: RLYLEMCVCVCVCVCMCVSGKTD*LPPTSP
Trigger: AGGGGATGTTGGAGGAAGGCAATCTGTCTTTCCTGA...CACACACATACATACACACACACACACACACACACACATTTCTAAATATAACCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR GCA 90 bp CAGGTTATATTTAGAAATGTGTGTGTGTGTGTGTGTGTGTGTATGTATGTGTGTTCAGGAAAGACAGATTaGCTTCCTCCAACATCCCCT +
Preference number: 4 (lower is better)
Translates to: QVIFRNVCVCVCVCMYVCSGKTD*LPPTSP
Trigger: AGGGGATGTTGGAGGAAGGCAATCTGTCTTTCCTGA...ACACACATACATACACACACACACACACACACACACATTTCTAAATATAACCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR CCA 90 bp GTTATATTTAGAAATGTGTGTGTGTGTGTGTGTGTGTGTATGTATGTGTGTGTAACACCCTTGTCACCGTaGGATAGGATACAGCAGATG +
Preference number: 4 (lower is better)
Translates to: VIFRNVCVCVCVCMYVCVTPLSP*DRIQQM
Trigger: CATCTGCTGTATCCTATCCCACGGTGACAAGGGTGT...TACACACACATACATACACACACACACACACACACACACATTTCTAAATATAAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR CCA 90 bp AGAAAAGAGGCCATGTATTTGAAATTGGAACATAACAAAGAAGGGTTTAAAGGGACACCCTTGTCACCGTaGGATAGGATACAGCAGATG +
Preference number: 4 (lower is better)
Translates to: RKEAMYLKLEHNKEGFKGTPLSP*DRIQQM
Trigger: CATCTGCTGTATCCTATCCCACGGTGACAAGGGTGT...CCCTTTAAACCCTTCTTTGTTATGTTCCAATTTCAAATACATGGCCTCTTTTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR TCA 90 bp AATAAATTAGACTCATCCACACAAAAGTGCACAGATAAGCCATGTGAACTGTGGGCCTTGCTGAAATCATaGTTGTTGATGATCAGACAG +
Preference number: 4 (lower is better)
Translates to: NKLDSSTQKCTDKPCELWALLKS*LLMIRQ
Trigger: CTGTCTGATCATCAACAATCATGATTTCAGCAAGGC...CCACAGTTCACATGGCTTATCTGTGCACTTTTGTGTGGATGAGTCTAATTTATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR TCA 90 bp AGATTCATGCTCCAGTCTTGCTTTCTTACTCATGCATCTTCAAGTTTTCTTTTTCAGGGAAGGGCACTTTaGACCAGTGAAGTAAGATGT +
Preference number: 4 (lower is better)
Translates to: RFMLQSCFLTHASSSFLFQGRAL*TSEVRC
Trigger: ACATCTTACTTCACTGGTTCAAAGTGCCCTTCCCTG...AAAAAGAAAACTTGAAGATGCATGAGTAAGAAAGCAAGACTGGAGCATGAATCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027189.15
CDS-3UTR TCA 90 bp AGGTTATATTTAGAAATGTGTGTGTGTGTGTGTGTGTGTGTATGTATGTGTGTGCTTCCTTGGCAAGCCTaGATGAAAAAGATCTTGGGT +
Preference number: 4 (lower is better)
Translates to: RLYLEMCVCVCVCVCMCVLPWQA*MKKILG
Trigger: ACCCAAGATCTTTTTCATTCAGGCTTGCCAAGGAAG...CACACACATACATACACACACACACACACACACACACATTTCTAAATATAACCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR TCA 90 bp AGAAAAGAGGCCATGTATTTGAAATTGGAACATAACAAAGAAGGGTTTAAAGGGACAGTTCCGCCATTTTaGGGCTCATCTCATCCAAAA +
Preference number: 4 (lower is better)
Translates to: RKEAMYLKLEHNKEGFKGTVPPF*GSSHPK
Trigger: TTTTGGATGAGATGAGCCTCAAAATGGCGGAACTGT...CCCTTTAAACCCTTCTTTGTTATGTTCCAATTTCAAATACATGGCCTCTTTTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR TCA 90 bp AGATTCATGCTCCAGTCTTGCTTTCTTACTCATGCATCTTCAAGTTTTCTTTTTCTTGGCAAGCCTGAATaGAAAAGATCTTGGGTTTCC +
Preference number: 4 (lower is better)
Translates to: RFMLQSCFLTHASSSFLFLGKPE*KRSWVS
Trigger: GGAAACCCAAGATCTTTTTCATTCAGGCTTGCCAAG...AAAAAGAAAACTTGAAGATGCATGAGTAAGAAAGCAAGACTGGAGCATGAATCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027189.15
CDS-3UTR TCA 90 bp AGAAAAGAGGCCATGTATTTGAAATTGGAACATAACAAAGAAGGGTTTAAAGGGCTTGGCAAGCCTGAATaGAAAAGATCTTGGGTTTCC +
Preference number: 4 (lower is better)
Translates to: RKEAMYLKLEHNKEGFKGLGKPE*KRSWVS
Trigger: GGAAACCCAAGATCTTTTTCATTCAGGCTTGCCAAG...CCCTTTAAACCCTTCTTTGTTATGTTCCAATTTCAAATACATGGCCTCTTTTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR TCA 90 bp GTTATATTTAGAAATGTGTGTGTGTGTGTGTGTGTGTGTATGTATGTGTGTGTACTCTGGCAAAGTGACTaGATATACCAGGTTCCATTC +
Preference number: 4 (lower is better)
Translates to: VIFRNVCVCVCVCMYVCVLWQSD*IYQVPF
Trigger: GAATGGAACCTGGTATATTCAGTCACTTTGCCAGAG...TACACACACATACATACACACACACACACACACACACACATTTCTAAATATAAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR GCA 90 bp CAGGTTATATTTAGAAATGTGTGTGTGTGTGTGTGTGTGTGTATGTATGTGTGTTTCCAAGTTATTTTCTaGCAGCATGGTCCTCTTCTC +
Preference number: 4 (lower is better)
Translates to: QVIFRNVCVCVCVCMYVCFQVIF*QHGPLL
Trigger: GAGAAGAGGACCATGCTGGCAGAAAATAACTTGGAA...ACACACATACATACACACACACACACACACACACACATTTCTAAATATAACCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR CCA 90 bp AGGTTATATTTAGAAATGTGTGTGTGTGTGTGTGTGTGTGTATGTATGTGTGTGCCTTCTAGAATCTCGTaGATTTCATTTGCAGTGCAG +
Preference number: 4 (lower is better)
Translates to: RLYLEMCVCVCVCVCMCVPSRIS*ISFAVQ
Trigger: CTGCACTGCAAATGAAATCCACGAGATTCTAGAAGG...CACACACATACATACACACACACACACACACACACACATTTCTAAATATAACCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR TCA 90 bp AGAAAAGAGGCCATGTATTTGAAATTGGAACATAACAAAGAAGGGTTTAAAGGGGCCTTGCTGAAATCATaGTTGTTGATGATCAGACAG +
Preference number: 4 (lower is better)
Translates to: RKEAMYLKLEHNKEGFKGALLKS*LLMIRQ
Trigger: CTGTCTGATCATCAACAATCATGATTTCAGCAAGGC...CCCTTTAAACCCTTCTTTGTTATGTTCCAATTTCAAATACATGGCCTCTTTTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR GCA 90 bp CAGTTAATGAGAAAAGAGGCCATGTATTTGAAATTGGAACATAACAAAGAAGGGTTCCAAGTTATTTTCTaGCAGCATGGTCCTCTTCTC +
Preference number: 4 (lower is better)
Translates to: QLMRKEAMYLKLEHNKEGFQVIF*QHGPLL
Trigger: GAGAAGAGGACCATGCTGGCAGAAAATAACTTGGAA...CCCTTCTTTGTTATGTTCCAATTTCAAATACATGGCCTCTTTTCTCATTAACTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
3UTR CAA 72 bp TTCACCCATTCTGTTAACCAGATTCATGCTCCAGTCTaGCTTTCTTACTCATGCATCTTCAAGTTTTCTTTT +
Preference number: 4 (lower is better)
Translates to: FTHSVNQIHAPV*LSYSCIFKFSF
Trigger: AAAAGAAAACTTGAAGATGCATGAGTAAGAAAGCAAGACTGGAGCATGAATCTGGTTAACAGAATGGGTGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027189.15
CDS-3UTR CCA 90 bp AGGTTATATTTAGAAATGTGTGTGTGTGTGTGTGTGTGTGTATGTATGTGTGTGCTTCCAGCTTACATTTaGGGATCTCATTGTTCAAAA +
Preference number: 4 (lower is better)
Translates to: RLYLEMCVCVCVCVCMCVLPAYI*GSHCSK
Trigger: TTTTGAACAATGAGATCCCCAAATGTAAGCTGGAAG...CACACACATACATACACACACACACACACACACACACATTTCTAAATATAACCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR CAA 90 bp CTCAGAGATCCTCCTGCCTCTGTCTCCAGAGTGCTGAGATTAAAGGTGAACCCATTCCCCAGCAGGCTCTaGTTGACCTGGTCACAGATT +
Preference number: 5 (lower is better)
Translates to: LRDPPASVSRVLRLKVNPFPSRL*LTWSQI
Trigger: AATCTGTGACCAGGTCAACAAGAGCCTGCTGGGGAA...TGGGTTCACCTTTAATCTCAGCACTCTGGAGACAGAGGCAGGAGGATCTCTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027189.15
CDS-3UTR CAA 90 bp ACTCATCCACACAAAAGTGCACAGATAAGCCATGTGAACTGTGGAGAGCACACATCCAAGCACAGGAACTaGAGGGCAGCCAGGTCTTCA +
Preference number: 5 (lower is better)
Translates to: THPHKSAQISHVNCGEHTSKHRN*RAARSS
Trigger: TGAAGACCTGGCTGCCCTCAAGTTCCTGTGCTTGGA...TGTGTGCTCTCCACAGTTCACATGGCTTATCTGTGCACTTTTGTGTGGATGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR CAA 90 bp TCATCCACACAAAAGTGCACAGATAAGCCATGTGAACTGTGGAGAGCACACATCGGAGAAATCTGGGCATaGTCTGGATCCCGCAGCTCT +
Preference number: 5 (lower is better)
Translates to: SSTQKCTDKPCELWRAHIGEIWA*SGSRSS
Trigger: AGAGCTGCGGGATCCAGACAATGCCCAGATTTCTCC...GATGTGTGCTCTCCACAGTTCACATGGCTTATCTGTGCACTTTTGTGTGGATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS TCA 90 bp ACTCACTGTCTTGTTCTCTTGGCGAGTCACACAGTTCCGCCATTTTaGGGCTCATCTCATCCAAAACTGAAGGTGGCAACTCTTCCCTTC +
Preference number: 5 (lower is better)
Translates to: THCLVLLASHTVPPF*GSSHPKLKVATLPF
Trigger: GAAGGGAAGAGTTGCCACCTTCAGTTTTGGATGAGATGAGCCTCAAAATGGCGGAACTGTGTGACTCGCCAAGAGAACAAGACAGTGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
ENSMUST00000190213.2
ENSMUST00000191201.7
CDS TCA 90 bp TTCCATAGACGACACCCTTGTCACCGTGGGATAGGATACAGCAGATaGAGCAGTCTTTGTTCTTGTGGTCTGCGCTTTGGTAGCCTTCTA +
Preference number: 5 (lower is better)
Translates to: FHRRHPCHRGIGYSR*SSLCSCGLRFGSLL
Trigger: TAGAAGGCTACCAAAGCGCAGACCACAAGAACAAAGACTGCTTCATCTGCTGTATCCTATCCCACGGTGACAAGGGTGTCGTCTATGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
ENSMUST00000190213.2
ENSMUST00000191201.7
CDS-3UTR CAA 90 bp TTAGACTCATCCACACAAAAGTGCACAGATAAGCCATGTGAACTGTGGAGAGCATCCAAGCACAGGAACTaGAGGGCAGCCAGGTCTTCA +
Preference number: 5 (lower is better)
Translates to: LDSSTQKCTDKPCELWRASKHRN*RAARSS
Trigger: TGAAGACCTGGCTGCCCTCAAGTTCCTGTGCTTGGA...TGCTCTCCACAGTTCACATGGCTTATCTGTGCACTTTTGTGTGGATGAGTCTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR CAA 90 bp ACTCATCCACACAAAAGTGCACAGATAAGCCATGTGAACTGTGGAGAGCACACACCCAGCAGGCTCTTGTaGACCTGGTCACAGATTGAT +
Preference number: 5 (lower is better)
Translates to: THPHKSAQISHVNCGEHTPSRLL*TWSQID
Trigger: ATCAATCTGTGACCAGGTCAACAAGAGCCTGCTGGG...TGTGTGCTCTCCACAGTTCACATGGCTTATCTGTGCACTTTTGTGTGGATGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR CAA 90 bp TCATCCACACAAAAGTGCACAGATAAGCCATGTGAACTGTGGAGAGCACACATCCCCAGCAGGCTCTTGTaGACCTGGTCACAGATTGAT +
Preference number: 5 (lower is better)
Translates to: SSTQKCTDKPCELWRAHIPSRLL*TWSQID
Trigger: ATCAATCTGTGACCAGGTCAACAAGAGCCTGCTGGG...GATGTGTGCTCTCCACAGTTCACATGGCTTATCTGTGCACTTTTGTGTGGATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS TCA 90 bp CATCAGGCACTCCTTTCTGGAAGTTACTTCCTTGGCAAGCCTGAATaGAAAAGATCTTGGGTTTCCCAGACAGGGAAGGGCACTTTGAAC +
Preference number: 5 (lower is better)
Translates to: HQALLSGSYFLGKPE*KRSWVSQTGKGTLN
Trigger: GTTCAAAGTGCCCTTCCCTGTCTGGGAAACCCAAGATCTTTTTCATTCAGGCTTGCCAAGGAAGTAACTTCCAGAAAGGAGTGCCTGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
ENSMUST00000190213.2
ENSMUST00000191201.7
CDS GCA 90 bp AAGGTGGCAACTCTTCCCTTCCTTCAAGGCTCATTCTTCTCTCTGTaGTTGATCTTTCATAATCCTCGATCTTCCCCAGCAGGCTCTTGT +
Preference number: 5 (lower is better)
Translates to: KVATLPFLQGSFFSL*LIFHNPRSSPAGSC
Trigger: ACAAGAGCCTGCTGGGGAAGATCGAGGATTATGAAAGATCAAGCACAGAGAGAAGAATGAGCCTTGAAGGAAGGGAAGAGTTGCCACCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
ENSMUST00000190213.2
ENSMUST00000191201.7
CDS-3UTR CAA 90 bp AAGCTTTCTCTGTGTAGCCCTGGCTATCTCAGAACTTGCTATGTAGAGCAGGTTGGCATCTGCTTTCCCTaGTTCCTCCTGTCGTCTTTA +
Preference number: 5 (lower is better)
Translates to: KLSLCSPGYLRTCYVEQVGICFP*FLLSSL
Trigger: TAAAGACGACAGGAGGAACAAGGGAAAGCAGATGCC...AACCTGCTCTACATAGCAAGTTCTGAGATAGCCAGGGCTACACAGAGAAAGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027189.15
CDS-3UTR CAA 90 bp ACTCATCCACACAAAAGTGCACAGATAAGCCATGTGAACTGTGGAGAGCACACAGGCATCTGCTTTCCCTaGTTCCTCCTGTCGTCTTTA +
Preference number: 5 (lower is better)
Translates to: THPHKSAQISHVNCGEHTGICFP*FLLSSL
Trigger: TAAAGACGACAGGAGGAACAAGGGAAAGCAGATGCC...TGTGTGCTCTCCACAGTTCACATGGCTTATCTGTGCACTTTTGTGTGGATGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR CAA 90 bp CTCAGAGATCCTCCTGCCTCTGTCTCCAGAGTGCTGAGATTAAAGGTGAACCCATTCTTCTCTCTGTGCTaGATCTTTCATAATCCTCGA +
Preference number: 5 (lower is better)
Translates to: LRDPPASVSRVLRLKVNPFFSLC*IFHNPR
Trigger: TCGAGGATTATGAAAGATCAAGCACAGAGAGAAGAA...TGGGTTCACCTTTAATCTCAGCACTCTGGAGACAGAGGCAGGAGGATCTCTGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027189.15
CDS-3UTR CAA 90 bp TTAGACTCATCCACACAAAAGTGCACAGATAAGCCATGTGAACTGTGGAGAGCACACAGTTCCGCCATTTaGAGGCTCATCTCATCCAAA +
Preference number: 5 (lower is better)
Translates to: LDSSTQKCTDKPCELWRAHSSAI*RLISSK
Trigger: TTTGGATGAGATGAGCCTCAAAATGGCGGAACTGTG...TGCTCTCCACAGTTCACATGGCTTATCTGTGCACTTTTGTGTGGATGAGTCTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR CAA 90 bp TTAGACTCATCCACACAAAAGTGCACAGATAAGCCATGTGAACTGTGGAGAGCACAGATGAAGCAGTCTTaGTTCTTGTGGTCTGCGCTT +
Preference number: 5 (lower is better)
Translates to: LDSSTQKCTDKPCELWRAQMKQS*FLWSAL
Trigger: AAGCGCAGACCACAAGAACAAAGACTGCTTCATCTG...TGCTCTCCACAGTTCACATGGCTTATCTGTGCACTTTTGTGTGGATGAGTCTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR CAA 90 bp AGGTTATATTTAGAAATGTGTGTGTGTGTGTGTGTGTGTGTATGTATGTGTGTGTTGCAGTCTAGGAAGTaGACCAGCAGGTCCCACCGA +
Preference number: 5 (lower is better)
Translates to: RLYLEMCVCVCVCVCMCVLQSRK*TSRSHR
Trigger: TCGGTGGGACCTGCTGGTCAACTTCCTAGACTGCAA...CACACACATACATACACACACACACACACACACACACATTTCTAAATATAACCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS TCA 90 bp ATTTTTCGGAGTTGGGTTATGTCTTCCCGGGCCTTGCTGAAATCATaGTTGTTGATGATCAGACAGTATCCCCGAGGTTTGTTCTTCATT +
Preference number: 5 (lower is better)
Translates to: IFRSWVMSSRALLKS*LLMIRQYPRGLFFI
Trigger: AATGAAGAACAAACCTCGGGGATACTGTCTGATCATCAACAATCATGATTTCAGCAAGGCCCGGGAAGACATAACCCAACTCCGAAAAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
ENSMUST00000190213.2
ENSMUST00000191201.7
CDS-3UTR CAA 90 bp GTTATATTTAGAAATGTGTGTGTGTGTGTGTGTGTGTGTATGTATGTGTGTGTATTGCAGTCTAGGAAGTaGACCAGCAGGTCCCACCGA +
Preference number: 5 (lower is better)
Translates to: VIFRNVCVCVCVCMYVCVLQSRK*TSRSHR
Trigger: TCGGTGGGACCTGCTGGTCAACTTCCTAGACTGCAA...TACACACACATACATACACACACACACACACACACACACATTTCTAAATATAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR CAA 90 bp CAGGTTATATTTAGAAATGTGTGTGTGTGTGTGTGTGTGTGTATGTATGTGTGTTTCCCCAGCAGGCTCTaGTTGACCTGGTCACAGATT +
Preference number: 5 (lower is better)
Translates to: QVIFRNVCVCVCVCMYVCFPSRL*LTWSQI
Trigger: AATCTGTGACCAGGTCAACAAGAGCCTGCTGGGGAA...ACACACATACATACACACACACACACACACACACACATTTCTAAATATAACCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR CAA 90 bp TCATCCACACAAAAGTGCACAGATAAGCCATGTGAACTGTGGAGAGCACACATCTTCTTCTCTCTGTGCTaGATCTTTCATAATCCTCGA +
Preference number: 5 (lower is better)
Translates to: SSTQKCTDKPCELWRAHIFFSLC*IFHNPR
Trigger: TCGAGGATTATGAAAGATCAAGCACAGAGAGAAGAA...GATGTGTGCTCTCCACAGTTCACATGGCTTATCTGTGCACTTTTGTGTGGATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR CAA 90 bp AATAAATTAGACTCATCCACACAAAAGTGCACAGATAAGCCATGTGAACTGTGGCACAGTTCCGCCATTTaGAGGCTCATCTCATCCAAA +
Preference number: 5 (lower is better)
Translates to: NKLDSSTQKCTDKPCELWHSSAI*RLISSK
Trigger: TTTGGATGAGATGAGCCTCAAAATGGCGGAACTGTG...CCACAGTTCACATGGCTTATCTGTGCACTTTTGTGTGGATGAGTCTAATTTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR CAA 90 bp CAGGTTATATTTAGAAATGTGTGTGTGTGTGTGTGTGTGTGTATGTATGTGTGTCAGATGAAGCAGTCTTaGTTCTTGTGGTCTGCGCTT +
Preference number: 5 (lower is better)
Translates to: QVIFRNVCVCVCVCMYVCQMKQS*FLWSAL
Trigger: AAGCGCAGACCACAAGAACAAAGACTGCTTCATCTG...ACACACATACATACACACACACACACACACACACACATTTCTAAATATAACCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS-3UTR CAA 90 bp AGTGCTGAGATTAAAGGTGAACCCATGGAAGCCAATTTGTATTGCCCAACTATTCTGGAAGTTACTTCCTaGGCAAGCCTGAATGAAAAA +
Preference number: 5 (lower is better)
Translates to: SAEIKGEPMEANLYCPTILEVTS*ASLNEK
Trigger: TTTTTCATTCAGGCTTGCCAAGGAAGTAACTTCCAG...AATAGTTGGGCAATACAAATTGGCTTCCATGGGTTCACCTTTAATCTCAGCACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027189.15
CDS-3UTR CAA 90 bp AGAAAAGAGGCCATGTATTTGAAATTGGAACATAACAAAGAAGGGTTTAAAGGGCTGGAAGTTACTTCCTaGGCAAGCCTGAATGAAAAA +
Preference number: 5 (lower is better)
Translates to: RKEAMYLKLEHNKEGFKGLEVTS*ASLNEK
Trigger: TTTTTCATTCAGGCTTGCCAAGGAAGTAACTTCCAG...CCCTTTAAACCCTTCTTTGTTATGTTCCAATTTCAAATACATGGCCTCTTTTCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
CDS CAA 90 bp TGGGCATTGTCTGGATCCCGCAGCTCTCTCACCATCTCCTCTCGGTaGCAGTCTAGGAAGTTGACCAGCAGGTCCCACCGACTGATGTGG +
Preference number: 6 (lower is better)
Translates to: WALSGSRSSLTISSR*QSRKLTSRSHRLMW
Trigger: CCACATCAGTCGGTGGGACCTGCTGGTCAACTTCCTAGACTGCAACCGAGAGGAGATGGTGAGAGAGCTGCGGGATCCAGACAATGCCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
ENSMUST00000190213.2
ENSMUST00000191201.7
CDS CAA 72 bp TCTGGATCCCGCAGCTCTCTCACCATCTCCTCTCGGTaGCAGTCTAGGAAGTTGACCAGCAGGTCCCACCGA +
Preference number: 6 (lower is better)
Translates to: SGSRSSLTISSR*QSRKLTSRSHR
Trigger: TCGGTGGGACCTGCTGGTCAACTTCCTAGACTGCAACCGAGAGGAGATGGTGAGAGAGCTGCGGGATCCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
ENSMUST00000190213.2
ENSMUST00000191201.7
CDS CAA 90 bp TCCCGCAGCTCTCTCACCATCTCCTCTCGGTTGCAGTCTAGGAAGTaGACCAGCAGGTCCCACCGACTGATGTGGAAAAGCAGCTCTTTC +
Preference number: 6 (lower is better)
Translates to: SRSSLTISSRLQSRK*TSRSHRLMWKSSSF
Trigger: GAAAGAGCTGCTTTTCCACATCAGTCGGTGGGACCTGCTGGTCAACTTCCTAGACTGCAACCGAGAGGAGATGGTGAGAGAGCTGCGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
ENSMUST00000190213.2
ENSMUST00000191201.7
CDS CCA 72 bp GAGCATGACCCTGTAGGGAGAAATCTGGGCATTGTCTaGATCCCGCAGCTCTCTCACCATCTCCTCTCGGTT +
Preference number: 6 (lower is better)
Translates to: EHDPVGRNLGIV*IPQLSHHLLSV
Trigger: AACCGAGAGGAGATGGTGAGAGAGCTGCGGGATCCAGACAATGCCCAGATTTCTCCCTACAGGGTCATGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
ENSMUST00000190213.2
ENSMUST00000191201.7
CDS TCA 72 bp GCTTCTTGTGTGGGATGTAGTCCAAGCACAGGAACTTaGGGGCAGCCAGGTCTTCACTGCCCAGTTCTTCAG +
Preference number: 6 (lower is better)
Translates to: ASCVGCSPSTGT*GQPGLHCPVLQ
Trigger: CTGAAGAACTGGGCAGTGAAGACCTGGCTGCCCTCAAGTTCCTGTGCTTGGACTACATCCCACACAAGAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
ENSMUST00000190213.2
ENSMUST00000191201.7
CDS CCA 72 bp AACATCCCCTTTTCCCGCAGCCTCAGAAATAGCTTCTaGGCATCCTCGATGGTCTCCTGCTTCTTGTGTGGG +
Preference number: 6 (lower is better)
Translates to: NIPFSRSLRNSF*ASSMVSCFLCG
Trigger: CCCACACAAGAAGCAGGAGACCATCGAGGATGCCCAGAAGCTATTTCTGAGGCTGCGGGAAAAGGGGATGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
ENSMUST00000190213.2
ENSMUST00000191201.7
CDS TCA 72 bp CGACACCCTTGTCACCGTGGGATAGGATACAGCAGATaGAGCAGTCTTTGTTCTTGTGGTCTGCGCTTTGGT +
Preference number: 6 (lower is better)
Translates to: RHPCHRGIGYSR*SSLCSCGLRFG
Trigger: ACCAAAGCGCAGACCACAAGAACAAAGACTGCTTCATCTGCTGTATCCTATCCCACGGTGACAAGGGTGTCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
ENSMUST00000190213.2
ENSMUST00000191201.7
CDS GCA 72 bp AGCTTCTTCCGTAGTGTGAAGGTGGGCTGTGGCATCTaGTTTCCCTTGTTCCTCCTGTCGTCTTTATTGCTC +
Preference number: 6 (lower is better)
Translates to: SFFRSVKVGCGI*FPLFLLSSLLL
Trigger: GAGCAATAAAGACGACAGGAGGAACAAGGGAAAGCAGATGCCACAGCCCACCTTCACACTACGGAAGAAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
ENSMUST00000190213.2
ENSMUST00000191201.7
CDS CAA 90 bp GACTCACTGTCTTGTTCTCTTGGCGAGTCACACAGTTCCGCCATTTaGAGGCTCATCTCATCCAAAACTGAAGGTGGCAACTCTTCCCTT +
Preference number: 6 (lower is better)
Translates to: DSLSCSLGESHSSAI*RLISSKTEGGNSSL
Trigger: AAGGGAAGAGTTGCCACCTTCAGTTTTGGATGAGATGAGCCTCAAAATGGCGGAACTGTGTGACTCGCCAAGAGAACAAGACAGTGAGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
ENSMUST00000190213.2
ENSMUST00000191201.7
CDS TCA 72 bp CAGTTCCGCCATTTTGAGGCTCATCTCATCCAAAACTaGAGGTGGCAACTCTTCCCTTCCTTCAAGGCTCAT +
Preference number: 6 (lower is better)
Translates to: QFRHFEAHLIQN*RWQLFPSFKAH
Trigger: ATGAGCCTTGAAGGAAGGGAAGAGTTGCCACCTTCAGTTTTGGATGAGATGAGCCTCAAAATGGCGGAACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
ENSMUST00000190213.2
ENSMUST00000191201.7
CDS TCA 72 bp CTTGTTCTCTTGGCGAGTCACACAGTTCCGCCATTTTaGGGCTCATCTCATCCAAAACTGAAGGTGGCAACT +
Preference number: 6 (lower is better)
Translates to: LVLLASHTVPPF*GSSHPKLKVAT
Trigger: AGTTGCCACCTTCAGTTTTGGATGAGATGAGCCTCAAAATGGCGGAACTGTGTGACTCGCCAAGAGAACAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
ENSMUST00000190213.2
ENSMUST00000191201.7
CDS TCA 72 bp TCCTTGAGGACATCTTTCCCTCAGGCTCTGGCAAAGTaGCTGAATATACCAGGTTCCATTCACAGGATCTCG +
Preference number: 6 (lower is better)
Translates to: SLRTSFPQALAK*LNIPGSIHRIS
Trigger: CGAGATCCTGTGAATGGAACCTGGTATATTCAGTCACTTTGCCAGAGCCTGAGGGAAAGATGTCCTCAAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
ENSMUST00000190213.2
ENSMUST00000191201.7
CDS CAA 72 bp TCTTGTTCTCTTGGCGAGTCACACAGTTCCGCCATTTaGAGGCTCATCTCATCCAAAACTGAAGGTGGCAAC +
Preference number: 6 (lower is better)
Translates to: SCSLGESHSSAI*RLISSKTEGGN
Trigger: GTTGCCACCTTCAGTTTTGGATGAGATGAGCCTCAAAATGGCGGAACTGTGTGACTCGCCAAGAGAACAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
ENSMUST00000190213.2
ENSMUST00000191201.7
CDS TCA 72 bp TTCCCTTCCTTCAAGGCTCATTCTTCTCTCTGTGCTTaGTCTTTCATAATCCTCGATCTTCCCCAGCAGGCT +
Preference number: 6 (lower is better)
Translates to: FPSFKAHSSLCA*SFIILDLPQQA
Trigger: AGCCTGCTGGGGAAGATCGAGGATTATGAAAGATCAAGCACAGAGAGAAGAATGAGCCTTGAAGGAAGGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
ENSMUST00000190213.2
ENSMUST00000191201.7
CDS TCA 72 bp AGTTGGGTTATGTCTTCCCGGGCCTTGCTGAAATCATaGTTGTTGATGATCAGACAGTATCCCCGAGGTTTG +
Preference number: 6 (lower is better)
Translates to: SWVMSSRALLKS*LLMIRQYPRGL
Trigger: CAAACCTCGGGGATACTGTCTGATCATCAACAATCATGATTTCAGCAAGGCCCGGGAAGACATAACCCAACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
ENSMUST00000190213.2
ENSMUST00000191201.7
CDS TCA 72 bp AAAGATCTTGGGTTTCCCAGACAGGGAAGGGCACTTTaGACCAGTGAAGTAAGATGTCAGGTCATAGATGGA +
Preference number: 6 (lower is better)
Translates to: KDLGFPRQGRAL*TSEVRCQVIDG
Trigger: TCCATCTATGACCTGACATCTTACTTCACTGGTTCAAAGTGCCCTTCCCTGTCTGGGAAACCCAAGATCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
ENSMUST00000190213.2
ENSMUST00000191201.7
CDS CAA 90 bp TGTGGTCTGCGCTTTGGTAGCCTTCTAGAATCTCGTGGATTTCATTaGCAGTGCAGTCGTCGTAAGATACTATCTCAAAATGAAGCTCCT +
Preference number: 6 (lower is better)
Translates to: CGLRFGSLLESRGFH*QCSRRKILSQNEAP
Trigger: AGGAGCTTCATTTTGAGATAGTATCTTACGACGACTGCACTGCAAATGAAATCCACGAGATTCTAGAAGGCTACCAAAGCGCAGACCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000027189.15
ENSMUST00000165549.8
ENSMUST00000190213.2
ENSMUST00000191201.7