Pregenerated sensors for CASP6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027997Ensembl transcript IDs: ENSMUST00000029626.9
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | GGCATCTACAAAATTGAAGCAGTTTACATTGATGGGTaGAAGTCTTCCACCAGCTGGCCTTTGTATAAAAAG | + |
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Preference number: 3 (lower is better) Translates to: GIYKIEAVYIDG*KSSTSWPLYKK Trigger: CTTTTTATACAAAGGCCAGCTGGTGGAAGACTTTCACCCATCAATGTAAACTGCTTCAATTTTGTAGATGCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS-3UTR GCA 90 bp | ACATTGATGGGTGAAAGTCTTCCACCAGCTGGCCTTTGTATAAAAAGGGAAATGGCACATGAGGAAGTCTaGCCCTGCCGGCAGCGTGTA | + |
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Preference number: 4 (lower is better) Translates to: TLMGESLPPAGLCIKREMAHEEV*PCRQRV Trigger: TACACGCTGCCGGCAGGGGCAGACTTCCTCATGTGC...CATTTCCCTTTTTATACAAAGGCCAGCTGGTGGAAGACTTTCACCCATCAATGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS-3UTR CCA 90 bp | AAATTGAAGCAGTTTACATTGATGGGTGAAAGTCTTCCACCAGCTGGCCTTTGTTGTCTCTGTCTGCGTTaGTGCCCCGCCTCTCTGGGA | + |
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Preference number: 4 (lower is better) Translates to: KLKQFTLMGESLPPAGLCCLCLR*CPASLG Trigger: TCCCAGAGAGGCGGGGCACCAACGCAGACAGAGACA...ACAAAGGCCAGCTGGTGGAAGACTTTCACCCATCAATGTAAACTGCTTCAATTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS-3UTR GCA 90 bp | GAAAGTCTTCCACCAGCTGGCCTTTGTATAAAAAGGGAAATGTGTGTGAAATATGAGGAAGTCTGCCCCTaGCGGCAGCGTGTACACGGA | + |
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Preference number: 4 (lower is better) Translates to: ESLPPAGLCIKREMCVKYEEVCP*RQRVHG Trigger: TCCGTGTACACGCTGCCGGCAGGGGCAGACTTCCTC...ATATTTCACACACATTTCCCTTTTTATACAAAGGCCAGCTGGTGGAAGACTTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS-3UTR CCA 90 bp | TCTATGGCATCTACAAAATTGAAGCAGTTTACATTGATGGGTGAAAGTCTTCCAGGTGCCCCGCCTCTCTaGGAGGGTCAGGTGCCAAAA | + |
|
Preference number: 4 (lower is better) Translates to: SMASTKLKQFTLMGESLPGAPPL*EGQVPK Trigger: TTTTGGCACCTGACCCTCCCAGAGAGGCGGGGCACC...TGGAAGACTTTCACCCATCAATGTAAACTGCTTCAATTTTGTAGATGCCATAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS-3UTR TCA 90 bp | TCTATGGCATCTACAAAATTGAAGCAGTTTACATTGATGGGTGAAAGTCTTCCACGACAGAGTAGCACATaGGGAAGTCTGCCCCTGCCG | + |
|
Preference number: 4 (lower is better) Translates to: SMASTKLKQFTLMGESLPRQSST*GSLPLP Trigger: CGGCAGGGGCAGACTTCCTCATGTGCTACTCTGTCG...TGGAAGACTTTCACCCATCAATGTAAACTGCTTCAATTTTGTAGATGCCATAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS-3UTR GCA 90 bp | TCTATGGCATCTACAAAATTGAAGCAGTTTACATTGATGGGTGAAAGTCTTCCACAGGTTGTCTCTGTCTaGGTTGGTGCCCCGCCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: SMASTKLKQFTLMGESLPQVVSV*VGAPPL Trigger: GAGAGGCGGGGCACCAACGCAGACAGAGACAACCTG...TGGAAGACTTTCACCCATCAATGTAAACTGCTTCAATTTTGTAGATGCCATAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS-3UTR TCA 90 bp | ACATTGATGGGTGAAAGTCTTCCACCAGCTGGCCTTTGTATAAAAAGGGAAATGACACCTCGTGAATTTTaGGCAGGAGTTCTTCTGCTC | + |
|
Preference number: 4 (lower is better) Translates to: TLMGESLPPAGLCIKREMTPREF*AGVLLL Trigger: GAGCAGAAGAACTCCTGCTCAAAATTCACGAGGTGT...CATTTCCCTTTTTATACAAAGGCCAGCTGGTGGAAGACTTTCACCCATCAATGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS-3UTR TCA 90 bp | AAATTGAAGCAGTTTACATTGATGGGTGAAAGTCTTCCACCAGCTGGCCTTTGTGAAGTCGACACCTCGTaGATTTTGAGCAGGAGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: KLKQFTLMGESLPPAGLCEVDTS*ILSRSS Trigger: AGAACTCCTGCTCAAAATTCACGAGGTGTCGACTTC...ACAAAGGCCAGCTGGTGGAAGACTTTCACCCATCAATGTAAACTGCTTCAATTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS-3UTR TCA 90 bp | TCTATGGCATCTACAAAATTGAAGCAGTTTACATTGATGGGTGAAAGTCTTCCAAGCTTGTCTGTCTGGTaGTCCACCATGTCCAGGGGA | + |
|
Preference number: 4 (lower is better) Translates to: SMASTKLKQFTLMGESLPSLSVW*STMSRG Trigger: TCCCCTGGACATGGTGGATCACCAGACAGACAAGCT...TGGAAGACTTTCACCCATCAATGTAAACTGCTTCAATTTTGTAGATGCCATAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS-3UTR GCA 90 bp | GAAAGTCTTCCACCAGCTGGCCTTTGTATAAAAAGGGAAATGTGTGTGAAATATATGCGTAAACGTGGTTaGCTTCCCCATGGCTCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: ESLPPAGLCIKREMCVKYMRKRG*LPHGSG Trigger: TCCTGAGCCATGGGGAAGGCAACCACGTTTACGCAT...ATATTTCACACACATTTCCCTTTTTATACAAAGGCCAGCTGGTGGAAGACTTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS-3UTR TCA 90 bp | AAATTGAAGCAGTTTACATTGATGGGTGAAAGTCTTCCACCAGCTGGCCTTTGTCAAAAGAACCTCTCGTaGTTGAAGATGAGGGCAACT | + |
|
Preference number: 4 (lower is better) Translates to: KLKQFTLMGESLPPAGLCQKNLS*LKMRAT Trigger: AGTTGCCCTCATCTTCAATCACGAGAGGTTCTTTTG...ACAAAGGCCAGCTGGTGGAAGACTTTCACCCATCAATGTAAACTGCTTCAATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS-3UTR GCA 90 bp | AAATTGAAGCAGTTTACATTGATGGGTGAAAGTCTTCCACCAGCTGGCCTTTGTGGTTTGGGACAGAAATaGAGCTTTTTGGTCAGCATT | + |
|
Preference number: 4 (lower is better) Translates to: KLKQFTLMGESLPPAGLCGLGQK*SFLVSI Trigger: AATGCTGACCAAAAAGCTGCATTTCTGTCCCAAACC...ACAAAGGCCAGCTGGTGGAAGACTTTCACCCATCAATGTAAACTGCTTCAATTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS-3UTR TCA 90 bp | TCTATGGCATCTACAAAATTGAAGCAGTTTACATTGATGGGTGAAAGTCTTCCAGACACTTGTCTCCTTTaGACAAGCCAGTCAACGTCT | + |
|
Preference number: 4 (lower is better) Translates to: SMASTKLKQFTLMGESLPDTCLL*TSQSTS Trigger: AGACGTTGACTGGCTTGTTCAAAGGAGACAAGTGTC...TGGAAGACTTTCACCCATCAATGTAAACTGCTTCAATTTTGTAGATGCCATAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS-3UTR CCA 90 bp | TCTATGGCATCTACAAAATTGAAGCAGTTTACATTGATGGGTGAAAGTCTTCCAAGAAATGCAGCTTTTTaGTCAGCATTGAGGCGAAGC | + |
|
Preference number: 4 (lower is better) Translates to: SMASTKLKQFTLMGESLPRNAAF*SALRRS Trigger: GCTTCGCCTCAATGCTGACCAAAAAGCTGCATTTCT...TGGAAGACTTTCACCCATCAATGTAAACTGCTTCAATTTTGTAGATGCCATAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| 3UTR CAA 72 bp | TTTTCTATGGCATCTACAAAATTGAAGCAGTTTACATaGATGGGTGAAAGTCTTCCACCAGCTGGCCTTTGT | + |
|
Preference number: 4 (lower is better) Translates to: FSMASTKLKQFT*MGESLPPAGLC Trigger: ACAAAGGCCAGCTGGTGGAAGACTTTCACCCATCAATGTAAACTGCTTCAATTTTGTAGATGCCATAGAAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS GCA 90 bp | AGGCGAAGCAGGGCACCTGCTTCTTGCCGATTGCATCCGGGTCTTTaGAGAAGTCCACGCGGCGCTGAGAGACCTTTCTGTTCACCAGCG | + |
|
Preference number: 5 (lower is better) Translates to: RRSRAPASCRLHPGL*RSPRGAERPFCSPA Trigger: CGCTGGTGAACAGAAAGGTCTCTCAGCGCCGCGTGGACTTCTGCAAAGACCCGGATGCAATCGGCAAGAAGCAGGTGCCCTGCTTCGCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS GCA 90 bp | GTAATACCCTTCTGCGACAGAGTAGCACATGAGGAAGTCTGCCCCTaGCGGCAGCGTGTACACGGACGCAGCATCCACCTGGGTCACGTT | + |
|
Preference number: 5 (lower is better) Translates to: VIPFCDRVAHEEVCP*RQRVHGRSIHLGHV Trigger: AACGTGACCCAGGTGGATGCTGCGTCCGTGTACACGCTGCCGGCAGGGGCAGACTTCCTCATGTGCTACTCTGTCGCAGAAGGGTATTAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS GCA 90 bp | GTGAGAGTAATACCCTTCTGCGACAGAGTAGCACATGAGGAAGTCTaGCCCTGCCGGCAGCGTGTACACGGACGCAGCATCCACCTGGGT | + |
|
Preference number: 5 (lower is better) Translates to: VRVIPFCDRVAHEEV*PCRQRVHGRSIHLG Trigger: ACCCAGGTGGATGCTGCGTCCGTGTACACGCTGCCGGCAGGGGCAGACTTCCTCATGTGCTACTCTGTCGCAGAAGGGTATTACTCTCAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS GCA 90 bp | GCAGCTTTTTGGTCAGCATTGAGGCGAAGCAGGGCACCTGCTTCTTaGCGATTGCATCCGGGTCTTTGCAGAAGTCCACGCGGCGCTGAG | + |
|
Preference number: 5 (lower is better) Translates to: AAFWSALRRSRAPAS*RLHPGLCRSPRGAE Trigger: CTCAGCGCCGCGTGGACTTCTGCAAAGACCCGGATGCAATCGGCAAGAAGCAGGTGCCCTGCTTCGCCTCAATGCTGACCAAAAAGCTGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS TCA 90 bp | TTCTTGCCGATTGCATCCGGGTCTTTGCAGAAGTCCACGCGGCGCTaGGAGACCTTTCTGTTCACCAGCGTGAGCAGCTCCGTGAACTCC | + |
|
Preference number: 5 (lower is better) Translates to: FLPIASGSLQKSTRR*ETFLFTSVSSSVNS Trigger: GGAGTTCACGGAGCTGCTCACGCTGGTGAACAGAAAGGTCTCTCAGCGCCGCGTGGACTTCTGCAAAGACCCGGATGCAATCGGCAAGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS CCA 90 bp | CCTGCGAGTCAGGTTGTCTCTGTCTGCGTTGGTGCCCCGCCTCTCTaGGAGGGTCAGGTGCCAAAAGAACCTCTCGTGATTGAAGATGAG | + |
|
Preference number: 5 (lower is better) Translates to: PASQVVSVCVGAPPL*EGQVPKEPLVIEDE Trigger: CTCATCTTCAATCACGAGAGGTTCTTTTGGCACCTGACCCTCCCAGAGAGGCGGGGCACCAACGCAGACAGAGACAACCTGACTCGCAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS TCA 90 bp | GTGCCCCGCCTCTCTGGGAGGGTCAGGTGCCAAAAGAACCTCTCGTaGTTGAAGATGAGGGCAACTCCTCTCCTCTTGTGGTCCATCTTG | + |
|
Preference number: 5 (lower is better) Translates to: VPRLSGRVRCQKNLS*LKMRATPLLLWSIL Trigger: CAAGATGGACCACAAGAGGAGAGGAGTTGCCCTCATCTTCAATCACGAGAGGTTCTTTTGGCACCTGACCCTCCCAGAGAGGCGGGGCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS TCA 90 bp | CAGTTTCTCGGTGAGAGTAATACCCTTCTGCGACAGAGTAGCACATaGGGAAGTCTGCCCCTGCCGGCAGCGTGTACACGGACGCAGCAT | + |
|
Preference number: 5 (lower is better) Translates to: QFLGESNTLLRQSST*GSLPLPAACTRTQH Trigger: ATGCTGCGTCCGTGTACACGCTGCCGGCAGGGGCAGACTTCCTCATGTGCTACTCTGTCGCAGAAGGGTATTACTCTCACCGAGAAACTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS GCA 90 bp | CTAGATCTGAAAACCTGCGAGTCAGGTTGTCTCTGTCTGCGTTGGTaGCCCGCCTCTCTGGGAGGGTCAGGTGCCAAAAGAACCTCTCGT | + |
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Preference number: 5 (lower is better) Translates to: LDLKTCESGCLCLRW*PASLGGSGAKRTSR Trigger: ACGAGAGGTTCTTTTGGCACCTGACCCTCCCAGAGAGGCGGGGCACCAACGCAGACAGAGACAACCTGACTCGCAGGTTTTCAGATCTAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS GCA 90 bp | CAGAAATGCAGCTTTTTGGTCAGCATTGAGGCGAAGCAGGGCACCTaGTTCTTGCCGATTGCATCCGGGTCTTTGCAGAAGTCCACGCGG | + |
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Preference number: 5 (lower is better) Translates to: QKCSFLVSIEAKQGT*FLPIASGSLQKSTR Trigger: CCGCGTGGACTTCTGCAAAGACCCGGATGCAATCGGCAAGAAGCAGGTGCCCTGCTTCGCCTCAATGCTGACCAAAAAGCTGCATTTCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS TCA 90 bp | CTACTTGCTAGGTTTGGGACAGAAATGCAGCTTTTTGGTCAGCATTaGGGCGAAGCAGGGCACCTGCTTCTTGCCGATTGCATCCGGGTC | + |
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Preference number: 5 (lower is better) Translates to: LLARFGTEMQLFGQH*GEAGHLLLADCIRV Trigger: GACCCGGATGCAATCGGCAAGAAGCAGGTGCCCTGCTTCGCCTCAATGCTGACCAAAAAGCTGCATTTCTGTCCCAAACCTAGCAAGTAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS CCA 90 bp | GAGGGCAACTCCTCTCCTCTTGTGGTCCATCTTGTACTGCTCGGCTaGATCGAACACTTCCCTACTTTTGTAGAAGCCATCGGTTTCTGT | + |
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Preference number: 5 (lower is better) Translates to: EGNSSPLVVHLVLLG*IEHFPTFVEAIGFC Trigger: ACAGAAACCGATGGCTTCTACAAAAGTAGGGAAGTGTTCGATCCAGCCGAGCAGTACAAGATGGACCACAAGAGGAGAGGAGTTGCCCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS-3UTR CAA 90 bp | ACATTGATGGGTGAAAGTCTTCCACCAGCTGGCCTTTGTATAAAAAGGGAAATGTTGTCTCTGTCTGCGTaGGTGCCCCGCCTCTCTGGG | + |
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Preference number: 5 (lower is better) Translates to: TLMGESLPPAGLCIKREMLSLSA*VPRLSG Trigger: CCCAGAGAGGCGGGGCACCAACGCAGACAGAGACAA...CATTTCCCTTTTTATACAAAGGCCAGCTGGTGGAAGACTTTCACCCATCAATGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS-3UTR CAA 90 bp | AAATTGAAGCAGTTTACATTGATGGGTGAAAGTCTTCCACCAGCTGGCCTTTGTCCTGCTTCTTGCCGATaGCATCCGGGTCTTTGCAGA | + |
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Preference number: 5 (lower is better) Translates to: KLKQFTLMGESLPPAGLCPASCR*HPGLCR Trigger: TCTGCAAAGACCCGGATGCAATCGGCAAGAAGCAGG...ACAAAGGCCAGCTGGTGGAAGACTTTCACCCATCAATGTAAACTGCTTCAATTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS TCA 90 bp | CAGATGAAGCAATCGGCATCTATGTGGCTTGAAGTCGACACCTCGTaGATTTTGAGCAGGAGTTCTTCTGCTCTGAGGTCGTTAAAGCAT | + |
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Preference number: 5 (lower is better) Translates to: QMKQSASMWLEVDTS*ILSRSSSALRSLKH Trigger: ATGCTTTAACGACCTCAGAGCAGAAGAACTCCTGCTCAAAATTCACGAGGTGTCGACTTCAAGCCACATAGATGCCGATTGCTTCATCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS-3UTR CAA 90 bp | GAAAGTCTTCCACCAGCTGGCCTTTGTATAAAAAGGGAAATGTGTGTGAAATATGCAACTCCTCTCCTCTaGTGGTCCATCTTGTACTGC | + |
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Preference number: 5 (lower is better) Translates to: ESLPPAGLCIKREMCVKYATPLL*WSILYC Trigger: GCAGTACAAGATGGACCACAAGAGGAGAGGAGTTGC...ATATTTCACACACATTTCCCTTTTTATACAAAGGCCAGCTGGTGGAAGACTTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS-3UTR CAA 90 bp | TCTATGGCATCTACAAAATTGAAGCAGTTTACATTGATGGGTGAAAGTCTTCCAGCTTTTTGGTCAGCATaGAGGCGAAGCAGGGCACCT | + |
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Preference number: 5 (lower is better) Translates to: SMASTKLKQFTLMGESLPAFWSA*RRSRAP Trigger: AGGTGCCCTGCTTCGCCTCAATGCTGACCAAAAAGC...TGGAAGACTTTCACCCATCAATGTAAACTGCTTCAATTTTGTAGATGCCATAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS-3UTR CAA 90 bp | TCTATGGCATCTACAAAATTGAAGCAGTTTACATTGATGGGTGAAAGTCTTCCACAGAAATGCAGCTTTTaGGTCAGCATTGAGGCGAAG | + |
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Preference number: 5 (lower is better) Translates to: SMASTKLKQFTLMGESLPQKCSF*VSIEAK Trigger: CTTCGCCTCAATGCTGACCAAAAAGCTGCATTTCTG...TGGAAGACTTTCACCCATCAATGTAAACTGCTTCAATTTTGTAGATGCCATAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS-3UTR CAA 90 bp | GAAAGTCTTCCACCAGCTGGCCTTTGTATAAAAAGGGAAATGTGTGTGAAATATTGGATGATAAATATCTaGGGTTTTCCAACCAGGCTC | + |
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Preference number: 5 (lower is better) Translates to: ESLPPAGLCIKREMCVKYWMINI*GFPTRL Trigger: GAGCCTGGTTGGAAAACCCAAGATATTTATCATCCA...ATATTTCACACACATTTCCCTTTTTATACAAAGGCCAGCTGGTGGAAGACTTTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS CAA 72 bp | GCATTGAGGCGAAGCAGGGCACCTGCTTCTTGCCGATaGCATCCGGGTCTTTGCAGAAGTCCACGCGGCGCT | + |
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Preference number: 6 (lower is better) Translates to: ALRRSRAPASCR*HPGLCRSPRGA Trigger: AGCGCCGCGTGGACTTCTGCAAAGACCCGGATGCAATCGGCAAGAAGCAGGTGCCCTGCTTCGCCTCAATGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS CAA 72 bp | TCTGAAAACCTGCGAGTCAGGTTGTCTCTGTCTGCGTaGGTGCCCCGCCTCTCTGGGAGGGTCAGGTGCCAA | + |
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Preference number: 6 (lower is better) Translates to: SENLRVRLSLSA*VPRLSGRVRCQ Trigger: TTGGCACCTGACCCTCCCAGAGAGGCGGGGCACCAACGCAGACAGAGACAACCTGACTCGCAGGTTTTCAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS CAA 90 bp | TTTTGGTCAGCATTGAGGCGAAGCAGGGCACCTGCTTCTTGCCGATaGCATCCGGGTCTTTGCAGAAGTCCACGCGGCGCTGAGAGACCT | + |
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Preference number: 6 (lower is better) Translates to: FWSALRRSRAPASCR*HPGLCRSPRGAERP Trigger: AGGTCTCTCAGCGCCGCGTGGACTTCTGCAAAGACCCGGATGCAATCGGCAAGAAGCAGGTGCCCTGCTTCGCCTCAATGCTGACCAAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS TCA 72 bp | GGTGAGAGTAATACCCTTCTGCGACAGAGTAGCACATaGGGAAGTCTGCCCCTGCCGGCAGCGTGTACACGG | + |
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Preference number: 6 (lower is better) Translates to: GESNTLLRQSST*GSLPLPAACTR Trigger: CCGTGTACACGCTGCCGGCAGGGGCAGACTTCCTCATGTGCTACTCTGTCGCAGAAGGGTATTACTCTCACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS TCA 72 bp | ATTGCATCCGGGTCTTTGCAGAAGTCCACGCGGCGCTaGGAGACCTTTCTGTTCACCAGCGTGAGCAGCTCC | + |
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Preference number: 6 (lower is better) Translates to: IASGSLQKSTRR*ETFLFTSVSSS Trigger: GGAGCTGCTCACGCTGGTGAACAGAAAGGTCTCTCAGCGCCGCGTGGACTTCTGCAAAGACCCGGATGCAAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS GCA 72 bp | AGGGCACCTGCTTCTTGCCGATTGCATCCGGGTCTTTaGAGAAGTCCACGCGGCGCTGAGAGACCTTTCTGT | + |
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Preference number: 6 (lower is better) Translates to: RAPASCRLHPGL*RSPRGAERPFC Trigger: ACAGAAAGGTCTCTCAGCGCCGCGTGGACTTCTGCAAAGACCCGGATGCAATCGGCAAGAAGCAGGTGCCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS GCA 72 bp | TGGTCAGCATTGAGGCGAAGCAGGGCACCTGCTTCTTaGCGATTGCATCCGGGTCTTTGCAGAAGTCCACGC | + |
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Preference number: 6 (lower is better) Translates to: WSALRRSRAPAS*RLHPGLCRSPR Trigger: GCGTGGACTTCTGCAAAGACCCGGATGCAATCGGCAAGAAGCAGGTGCCCTGCTTCGCCTCAATGCTGACCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS CCA 72 bp | CAGGTTGTCTCTGTCTGCGTTGGTGCCCCGCCTCTCTaGGAGGGTCAGGTGCCAAAAGAACCTCTCGTGATT | + |
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Preference number: 6 (lower is better) Translates to: QVVSVCVGAPPL*EGQVPKEPLVI Trigger: AATCACGAGAGGTTCTTTTGGCACCTGACCCTCCCAGAGAGGCGGGGCACCAACGCAGACAGAGACAACCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS CAA 72 bp | TTGGTCAGCATTGAGGCGAAGCAGGGCACCTGCTTCTaGCCGATTGCATCCGGGTCTTTGCAGAAGTCCACG | + |
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Preference number: 6 (lower is better) Translates to: LVSIEAKQGTCF*PIASGSLQKST Trigger: CGTGGACTTCTGCAAAGACCCGGATGCAATCGGCAAGAAGCAGGTGCCCTGCTTCGCCTCAATGCTGACCAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS CCA 72 bp | TCCACCATGTCCAGGGGAACCACGGGTACGTCATGCTaGCTACCCCGACAGGCCTGGATGATAAATATCTTG | + |
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Preference number: 6 (lower is better) Translates to: STMSRGTTGTSC*LPRQAWMINIL Trigger: CAAGATATTTATCATCCAGGCCTGTCGGGGTAGCCAGCATGACGTACCCGTGGTTCCCCTGGACATGGTGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS TCA 72 bp | CTCTCTGGGAGGGTCAGGTGCCAAAAGAACCTCTCGTaGTTGAAGATGAGGGCAACTCCTCTCCTCTTGTGG | + |
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Preference number: 6 (lower is better) Translates to: LSGRVRCQKNLS*LKMRATPLLLW Trigger: CCACAAGAGGAGAGGAGTTGCCCTCATCTTCAATCACGAGAGGTTCTTTTGGCACCTGACCCTCCCAGAGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS GCA 72 bp | AGCTTTTTGGTCAGCATTGAGGCGAAGCAGGGCACCTaGTTCTTGCCGATTGCATCCGGGTCTTTGCAGAAG | + |
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Preference number: 6 (lower is better) Translates to: SFLVSIEAKQGT*FLPIASGSLQK Trigger: CTTCTGCAAAGACCCGGATGCAATCGGCAAGAAGCAGGTGCCCTGCTTCGCCTCAATGCTGACCAAAAAGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS CCA 72 bp | ACCACGGGTACGTCATGCTGGCTACCCCGACAGGCCTaGATGATAAATATCTTGGGTTTTCCAACCAGGCTC | + |
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Preference number: 6 (lower is better) Translates to: TTGTSCWLPRQA*MINILGFPTRL Trigger: GAGCCTGGTTGGAAAACCCAAGATATTTATCATCCAGGCCTGTCGGGGTAGCCAGCATGACGTACCCGTGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS GCA 72 bp | GCCAGTCAACGTCTGAATTTCAATTTTGGCGTCGTATaGGTAAACGTGGTTGCCTTCCCCATGGCTCAGGAA | + |
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Preference number: 6 (lower is better) Translates to: ASQRLNFNFGVV*VNVVAFPMAQE Trigger: TTCCTGAGCCATGGGGAAGGCAACCACGTTTACGCATACGACGCCAAAATTGAAATTCAGACGTTGACTGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS CCA 72 bp | TCCTCTCCTCTTGTGGTCCATCTTGTACTGCTCGGCTaGATCGAACACTTCCCTACTTTTGTAGAAGCCATC | + |
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Preference number: 6 (lower is better) Translates to: SSPLVVHLVLLG*IEHFPTFVEAI Trigger: GATGGCTTCTACAAAAGTAGGGAAGTGTTCGATCCAGCCGAGCAGTACAAGATGGACCACAAGAGGAGAGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS TCA 72 bp | GAAGACACAGATGAAGCAATCGGCATCTATGTGGCTTaGAGTCGACACCTCGTGAATTTTGAGCAGGAGTTC | + |
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Preference number: 6 (lower is better) Translates to: EDTDEAIGIYVA*SRHLVNFEQEF Trigger: GAACTCCTGCTCAAAATTCACGAGGTGTCGACTTCAAGCCACATAGATGCCGATTGCTTCATCTGTGTCTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS TCA 72 bp | TGGGTTTTCCAACCAGGCTCTGACACTTGTCTCCTTTaGACAAGCCAGTCAACGTCTGAATTTCAATTTTGG | + |
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Preference number: 6 (lower is better) Translates to: WVFQPGSDTCLL*TSQSTSEFQFW Trigger: CCAAAATTGAAATTCAGACGTTGACTGGCTTGTTCAAAGGAGACAAGTGTCAGAGCCTGGTTGGAAAACCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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| CDS GCA 72 bp | AGTCGACACCTCGTGAATTTTGAGCAGGAGTTCTTCTaGTCTGAGGTCGTTAAAGCATTTCACTTCAAATCC | + |
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Preference number: 6 (lower is better) Translates to: SRHLVNFEQEFF*SEVVKAFHFKS Trigger: GGATTTGAAGTGAAATGCTTTAACGACCTCAGAGCAGAAGAACTCCTGCTCAAAATTCACGAGGTGTCGACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029626.9 |
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