Pregenerated sensors for CASP4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000033538Ensembl transcript IDs: ENSMUST00000027012.14, ENSMUST00000159461.8, ENSMUST00000160064.8, ENSMUST00000162846.8
Found 77 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCATCAGCTTCCATATTCCTAGGTAGATCTACACCTCTGCACAACTaGGGTTTTGAAGACTCTCTGATCCACATTTCTCCAGAGTTCCCA | + |
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Preference number: 1 (lower is better) Translates to: ASASIFLGRSTPLHN*GFEDSLIHISPEFP Trigger: TGGGAACTCTGGAGAAATGTGGATCAGAGAGTCTTCAAAACCCCAGTTGTGCAGAGGTGTAGATCTACCTAGGAATATGGAAGCTGATGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159461.8 ENSMUST00000160064.8 |
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| 3UTR CCA 90 bp | CTTAATTTCACTAGTTCTGGAATTTCAGGAATAGAATGTGATCCTTaGCCAAGATCACTTCTTCAAGCTGAAGAAATGAGATTCAGTTGC | + |
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Preference number: 1 (lower is better) Translates to: LNFTSSGISGIECDP*PRSLLQAEEMRFSC Trigger: GCAACTGAATCTCATTTCTTCAGCTTGAAGAAGTGATCTTGGCCAAGGATCACATTCTATTCCTGAAATTCCAGAACTAGTGAAATTAAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027012.14 |
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| 3UTR-3UTR TCA 90 bp | CCTCTGCACAACTGGGGTTTTGAAGACTCTCTGATCCACATTTCTCCAGAGTTCCCATGCAGTGTGCCATaGGACATTAGCACCAGGAAT | + |
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Preference number: 2 (lower is better) Translates to: PLHNWGFEDSLIHISPEFPCSVP*DISTRN Trigger: ATTCCTGGTGCTAATGTCTCATGGCACACTGCATGG...GAACTCTGGAGAAATGTGGATCAGAGAGTCTTCAAAACCCCAGTTGTGCAGAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000159461.8 ENSMUST00000160064.8 |
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| 3UTR-3UTR CCA 90 bp | ACGTGGCTCAGCTTGACAGCATCAGCTTCCATATTCCTAGGTAGATCTACACCTGTGCTGTCTGATGTCTaGTGTTCTGAGAGTGCAGCA | + |
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Preference number: 2 (lower is better) Translates to: TWLSLTASASIFLGRSTPVLSDV*CSESAA Trigger: TGCTGCACTCTCAGAACACCAGACATCAGACAGCAC...AGGTGTAGATCTACCTAGGAATATGGAAGCTGATGCTGTCAAGCTGAGCCACGT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000159461.8 ENSMUST00000160064.8 |
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| 3UTR-3UTR TCA 90 bp | GCAAGCATGTTTCCGGAAGCAGGAAATGAGTCTAGTGATGAAGTAAGAGCCTCCAAAGTCTTTCATCTCTaGCTCCATGCCCTCTGCTGT | + |
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Preference number: 2 (lower is better) Translates to: ASMFPEAGNESSDEVRASKVFHL*LHALCC Trigger: ACAGCAGAGGGCATGGAGTCAGAGATGAAAGACTTT...GGAGGCTCTTACTTCATCACTAGACTCATTTCCTGCTTCCGGAAACATGCTTGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159461.8 |
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| 3UTR-3UTR TCA 90 bp | GAAGTCCTTCTCCACGTGGCTCAGCTTGACAGCATCAGCTTCCATATTCCTAGGGTTTTGAAGACTCTCTaGTCCACATTTCTCCAGAGT | + |
|
Preference number: 2 (lower is better) Translates to: EVLLHVAQLDSISFHIPRVLKTL*STFLQS Trigger: ACTCTGGAGAAATGTGGATCAGAGAGTCTTCAAAAC...CCTAGGAATATGGAAGCTGATGCTGTCAAGCTGAGCCACGTGGAGAAGGACTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159461.8 ENSMUST00000160064.8 |
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| 3UTR-3UTR TCA 90 bp | TCAGCTTCCATATTCCTAGGTAGATCTACACCTCTGCACAACTGGGGTTTTGAACCATGCAGTGTGCCATaGGACATTAGCACCAGGAAT | + |
|
Preference number: 2 (lower is better) Translates to: SASIFLGRSTPLHNWGFEPCSVP*DISTRN Trigger: ATTCCTGGTGCTAATGTCTCATGGCACACTGCATGG...TTCAAAACCCCAGTTGTGCAGAGGTGTAGATCTACCTAGGAATATGGAAGCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000159461.8 ENSMUST00000160064.8 |
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| 3UTR-3UTR TCA 90 bp | CAATGGTGGGCATCTGGGAATGAATACTTGCCTTTTCAAATGATTGTTGCACCTCCACGTGGCTCAGCTTaGCAGCATCAGCTTCCATAT | + |
|
Preference number: 2 (lower is better) Translates to: QWWASGNEYLPFQMIVAPPRGSA*QHQLPY Trigger: ATATGGAAGCTGATGCTGTCAAGCTGAGCCACGTGG...AGGTGCAACAATCATTTGAAAAGGCAAGTATTCATTCCCAGATGCCCACCATTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159461.8 |
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| 3UTR-3UTR GCA 90 bp | CCTCTGCACAACTGGGGTTTTGAAGACTCTCTGATCCACATTTCTCCAGAGTTCTTAGCACCAGGAATGTaGTGTCTGATGTCTGGTGTT | + |
|
Preference number: 2 (lower is better) Translates to: PLHNWGFEDSLIHISPEFLAPGM*CLMSGV Trigger: AACACCAGACATCAGACAGCACATTCCTGGTGCTAA...GAACTCTGGAGAAATGTGGATCAGAGAGTCTTCAAAACCCCAGTTGTGCAGAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000159461.8 ENSMUST00000160064.8 |
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| 3UTR-3UTR GCA 90 bp | TTCTCCACGTGGCTCAGCTTGACAGCATCAGCTTCCATATTCCTAGGTAGATCTAAATGCCATGCAGTGTaGCATGAGACATTAGCACCA | + |
|
Preference number: 2 (lower is better) Translates to: FSTWLSLTASASIFLGRSKCHAV*HETLAP Trigger: TGGTGCTAATGTCTCATGGCACACTGCATGGCATTT...AGATCTACCTAGGAATATGGAAGCTGATGCTGTCAAGCTGAGCCACGTGGAGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000159461.8 ENSMUST00000160064.8 |
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| 3UTR-3UTR TCA 90 bp | CCTCTGCACAACTGGGGTTTTGAAGACTCTCTGATCCACATTTCTCCAGAGTTCGACAGTGGCAATTGTTaGATATCTGATAGATGGTAT | + |
|
Preference number: 2 (lower is better) Translates to: PLHNWGFEDSLIHISPEFDSGNC*ISDRWY Trigger: ATACCATCTATCAGATATTCAACAATTGCCACTGTC...GAACTCTGGAGAAATGTGGATCAGAGAGTCTTCAAAACCCCAGTTGTGCAGAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000159461.8 ENSMUST00000160064.8 |
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| 3UTR-3UTR TCA 90 bp | CTTAATTTCACTAGTTCTGGAATTTCAGGAATAGAATGTGATCCTTGGCCAAGATTCAAGCTGAAGAAATaGGATTCAGTTGCTTGTTGC | + |
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Preference number: 2 (lower is better) Translates to: LNFTSSGISGIECDPWPRFKLKK*DSVACC Trigger: GCAACAAGCAACTGAATCTCATTTCTTCAGCTTGAA...TCTTGGCCAAGGATCACATTCTATTCCTGAAATTCCAGAACTAGTGAAATTAAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027012.14 |
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| 3UTR-3UTR GCA 90 bp | ATACCCCACCTTGAGACCTGTGAATGTGTTTTCTACAACTTCTTTAACAGGATAAGATGTCTTTTGACCTaGAAAGCTATATGGTTTAGA | + |
|
Preference number: 2 (lower is better) Translates to: IPHLETCECVFYNFFNRIRCLLT*KAIWFR Trigger: TCTAAACCATATAGCTTTGCAGGTCAAAAGACATCT...TATCCTGTTAAAGAAGTTGTAGAAAACACATTCACAGGTCTCAAGGTGGGGTAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000160064.8 |
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| 3UTR-3UTR TCA 90 bp | CAGCAAGGAAAATACGTAAGACTGATATACTTTGAGAAGAAAGAGGTAAGTAGATGTCATACACTGTCCTaGTGGTGTCTTACATATATT | + |
|
Preference number: 2 (lower is better) Translates to: QQGKYVRLIYFEKKEVSRCHTLS*WCLTYI Trigger: AATATATGTAAGACACCATCAGGACAGTGTATGACA...TCTACTTACCTCTTTCTTCTCAAAGTATATCAGTCTTACGTATTTTCCTTGCTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160064.8 |
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| 3UTR-3UTR CAA 90 bp | GCAAGCATGTTTCCGGAAGCAGGAAATGAGTCTAGTGATGAAGTAAGAGCCTCCTGCACAATGATGACTTaGGGTTTGTCTCGTAGACCT | + |
|
Preference number: 3 (lower is better) Translates to: ASMFPEAGNESSDEVRASCTMMT*GLSRRP Trigger: AGGTCTACGAGACAAACCCAAAGTCATCATTGTGCA...GGAGGCTCTTACTTCATCACTAGACTCATTTCCTGCTTCCGGAAACATGCTTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159461.8 |
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| 3UTR TCA 72 bp | TGGGTTTGTCTCGTAGACCTGGACAGTGGCAATTGTTaGATATCTGATAGATGGTATCATACTGTAGCACAT | + |
|
Preference number: 3 (lower is better) Translates to: WVCLVDLDSGNC*ISDRWYHTVAH Trigger: ATGTGCTACAGTATGATACCATCTATCAGATATTCAACAATTGCCACTGTCCAGGTCTACGAGACAAACCCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000159461.8 ENSMUST00000160064.8 |
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| 3UTR CCA 72 bp | ACTAGTTCTGGAATTTCAGGAATAGAATGTGATCCTTaGCCAAGATCACTTCTTCAAGCTGAAGAAATGAGA | + |
|
Preference number: 3 (lower is better) Translates to: TSSGISGIECDP*PRSLLQAEEMR Trigger: TCTCATTTCTTCAGCTTGAAGAAGTGATCTTGGCCAAGGATCACATTCTATTCCTGAAATTCCAGAACTAGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027012.14 |
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| 3UTR TCA 72 bp | CTATACAAATCCTTAACTATAGGAAAAGGCCAGTCTTaGAAGTTGTGTCTAGGAGTAGATGTACTCAAAACA | + |
|
Preference number: 3 (lower is better) Translates to: LYKSLTIGKGQS*KLCLGVDVLKT Trigger: TGTTTTGAGTACATCTACTCCTAGACACAACTTTCAAGACTGGCCTTTTCCTATAGTTAAGGATTTGTATAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160064.8 |
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| CDS-3UTR TCA 90 bp | GAAGTCCTTCTCCACGTGGCTCAGCTTGACAGCATCAGCTTCCATATTCCTAGGTGCCTGGGTCCACACTaGAGAATGTCTGGAGAAGCA | + |
|
Preference number: 4 (lower is better) Translates to: EVLLHVAQLDSISFHIPRCLGPH*RMSGEA Trigger: TGCTTCTCCAGACATTCTTCAGTGTGGACCCAGGCA...CCTAGGAATATGGAAGCTGATGCTGTCAAGCTGAGCCACGTGGAGAAGGACTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000159461.8 ENSMUST00000160064.8 |
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| CDS-3UTR CCA 90 bp | TCTAGTGATGAAGTAAGAGCCTCCTGTTTTGTCTCGGTAGGACAAGTGATGTGGACCATGGTGGCTGCCTaGGTCCACACTGAAGAATGT | + |
|
Preference number: 4 (lower is better) Translates to: SSDEVRASCFVSVGQVMWTMVAA*VHTEEC Trigger: ACATTCTTCAGTGTGGACCCAGGCAGCCACCATGGT...CCACATCACTTGTCCTACCGAGACAAAACAGGAGGCTCTTACTTCATCACTAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159461.8 |
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| CDS-3UTR CCA 90 bp | TCAGCTTCCATATTCCTAGGTAGATCTACACCTCTGCACAACTGGGGTTTTGAAACCATGGTGGCTGCCTaGGTCCACACTGAAGAATGT | + |
|
Preference number: 4 (lower is better) Translates to: SASIFLGRSTPLHNWGFETMVAA*VHTEEC Trigger: ACATTCTTCAGTGTGGACCCAGGCAGCCACCATGGT...TTCAAAACCCCAGTTGTGCAGAGGTGTAGATCTACCTAGGAATATGGAAGCTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000159461.8 ENSMUST00000160064.8 |
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| CDS-3UTR CCA 90 bp | GAAGTCCTTCTCCACGTGGCTCAGCTTGACAGCATCAGCTTCCATATTCCTAGGTTCCAACACCTTAAGTaGTTTGTCAGGGTGTTTGTT | + |
|
Preference number: 4 (lower is better) Translates to: EVLLHVAQLDSISFHIPRFQHLK*FVRVFV Trigger: AACAAACACCCTGACAAACCACTTAAGGTGTTGGAA...CCTAGGAATATGGAAGCTGATGCTGTCAAGCTGAGCCACGTGGAGAAGGACTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160064.8 |
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| CDS-3UTR TCA 90 bp | TTGCACCTTCAGGAATATATCAAAGAGATGACAAGAGCAAGCATGTTTCCGGAATGCCTGGGTCCACACTaGAGAATGTCTGGAGAAGCA | + |
|
Preference number: 4 (lower is better) Translates to: LHLQEYIKEMTRASMFPECLGPH*RMSGEA Trigger: TGCTTCTCCAGACATTCTTCAGTGTGGACCCAGGCA...TTCCGGAAACATGCTTGCTCTTGTCATCTCTTTGATATATTCCTGAAGGTGCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159461.8 |
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| CDS-3UTR CCA 90 bp | GAAGTCCTTCTCCACGTGGCTCAGCTTGACAGCATCAGCTTCCATATTCCTAGGTGTGTTTCTTTTTCATaGCATCTACAAAAACCCAAC | + |
|
Preference number: 4 (lower is better) Translates to: EVLLHVAQLDSISFHIPRCVSFS*HLQKPN Trigger: GTTGGGTTTTTGTAGATGCCATGAAAAAGAAACACA...CCTAGGAATATGGAAGCTGATGCTGTCAAGCTGAGCCACGTGGAGAAGGACTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000159461.8 ENSMUST00000160064.8 |
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| CDS-3UTR TCA 90 bp | TTCCTTAATTTCACTAGTTCTGGAATTTCAGGAATAGAATGTGATCCTTGGCCATGCCTGGGTCCACACTaGAGAATGTCTGGAGAAGCA | + |
|
Preference number: 4 (lower is better) Translates to: FLNFTSSGISGIECDPWPCLGPH*RMSGEA Trigger: TGCTTCTCCAGACATTCTTCAGTGTGGACCCAGGCA...TGGCCAAGGATCACATTCTATTCCTGAAATTCCAGAACTAGTGAAATTAAGGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027012.14 |
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| CDS-3UTR TCA 90 bp | TTCCTTAATTTCACTAGTTCTGGAATTTCAGGAATAGAATGTGATCCTTGGCCACCACGTGGCTCAGCTTaGCAGCATCAGCTTCCATAT | + |
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Preference number: 4 (lower is better) Translates to: FLNFTSSGISGIECDPWPPRGSA*QHQLPY Trigger: ATATGGAAGCTGATGCTGTCAAGCTGAGCCACGTGG...TGGCCAAGGATCACATTCTATTCCTGAAATTCCAGAACTAGTGAAATTAAGGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027012.14 |
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| CDS-3UTR CCA 90 bp | TTCCTTAATTTCACTAGTTCTGGAATTTCAGGAATAGAATGTGATCCTTGGCCAACCATGGTGGCTGCCTaGGTCCACACTGAAGAATGT | + |
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Preference number: 4 (lower is better) Translates to: FLNFTSSGISGIECDPWPTMVAA*VHTEEC Trigger: ACATTCTTCAGTGTGGACCCAGGCAGCCACCATGGT...TGGCCAAGGATCACATTCTATTCCTGAAATTCCAGAACTAGTGAAATTAAGGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027012.14 |
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| CDS-3UTR TCA 90 bp | CTTAATTTCACTAGTTCTGGAATTTCAGGAATAGAATGTGATCCTTGGCCAAGACCATGCAGTGTGCCATaGGACATTAGCACCAGGAAT | + |
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Preference number: 4 (lower is better) Translates to: LNFTSSGISGIECDPWPRPCSVP*DISTRN Trigger: ATTCCTGGTGCTAATGTCTCATGGCACACTGCATGG...TCTTGGCCAAGGATCACATTCTATTCCTGAAATTCCAGAACTAGTGAAATTAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027012.14 |
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| CDS-3UTR CCA 90 bp | GCAAGCATGTTTCCGGAAGCAGGAAATGAGTCTAGTGATGAAGTAAGAGCCTCCTGTGTTTCTTTTTCATaGCATCTACAAAAACCCAAC | + |
|
Preference number: 4 (lower is better) Translates to: ASMFPEAGNESSDEVRASCVSFS*HLQKPN Trigger: GTTGGGTTTTTGTAGATGCCATGAAAAAGAAACACA...GGAGGCTCTTACTTCATCACTAGACTCATTTCCTGCTTCCGGAAACATGCTTGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000159461.8 |
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| CDS-3UTR CCA 90 bp | CTTAATTTCACTAGTTCTGGAATTTCAGGAATAGAATGTGATCCTTGGCCAAGAGTGCTGTCTGATGTCTaGTGTTCTGAGAGTGCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: LNFTSSGISGIECDPWPRVLSDV*CSESAA Trigger: TGCTGCACTCTCAGAACACCAGACATCAGACAGCAC...TCTTGGCCAAGGATCACATTCTATTCCTGAAATTCCAGAACTAGTGAAATTAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027012.14 |
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| CDS-3UTR CCA 90 bp | TTCCTTAATTTCACTAGTTCTGGAATTTCAGGAATAGAATGTGATCCTTGGCCAAGGTTGCCCGATCAATaGTGGGCATCTGGGAATGAA | + |
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Preference number: 4 (lower is better) Translates to: FLNFTSSGISGIECDPWPRLPDQ*WASGNE Trigger: TTCATTCCCAGATGCCCACCATTGATCGGGCAACCT...TGGCCAAGGATCACATTCTATTCCTGAAATTCCAGAACTAGTGAAATTAAGGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027012.14 |
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| 3UTR CAA 72 bp | CAGGATACCCCATTCCTAGTGGACCATGTCATAAAATaGGTATATCTAGAATTTGGCAGGATGTTGGCCAAA | + |
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Preference number: 4 (lower is better) Translates to: QDTPFLVDHVIK*VYLEFGRMLAK Trigger: TTTGGCCAACATCCTGCCAAATTCTAGATATACCAATTTTATGACATGGTCCACTAGGAATGGGGTATCCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160064.8 |
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| CDS-3UTR TCA 90 bp | CTTAATTTCACTAGTTCTGGAATTTCAGGAATAGAATGTGATCCTTGGCCAAGACTCTGCAAAGCCTTGTaGACTCTTCAGGGGAACAAA | + |
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Preference number: 4 (lower is better) Translates to: LNFTSSGISGIECDPWPRLCKAL*TLQGNK Trigger: TTTGTTCCCCTGAAGAGTTCACAAGGCTTTGCAGAG...TCTTGGCCAAGGATCACATTCTATTCCTGAAATTCCAGAACTAGTGAAATTAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027012.14 |
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| CDS-3UTR TCA 90 bp | CTTAATTTCACTAGTTCTGGAATTTCAGGAATAGAATGTGATCCTTGGCCAAGAAAAGTCTTTCATCTCTaGCTCCATGCCCTCTGCTGT | + |
|
Preference number: 4 (lower is better) Translates to: LNFTSSGISGIECDPWPRKVFHL*LHALCC Trigger: ACAGCAGAGGGCATGGAGTCAGAGATGAAAGACTTT...TCTTGGCCAAGGATCACATTCTATTCCTGAAATTCCAGAACTAGTGAAATTAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027012.14 |
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| CDS-3UTR CCA 90 bp | TTCCTTAATTTCACTAGTTCTGGAATTTCAGGAATAGAATGTGATCCTTGGCCATTGCCCGATCAATGGTaGGCATCTGGGAATGAATAC | + |
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Preference number: 4 (lower is better) Translates to: FLNFTSSGISGIECDPWPLPDQW*ASGNEY Trigger: GTATTCATTCCCAGATGCCCACCATTGATCGGGCAA...TGGCCAAGGATCACATTCTATTCCTGAAATTCCAGAACTAGTGAAATTAAGGAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027012.14 |
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| CDS-3UTR GCA 90 bp | TGGGCATCTGGGAATGAATACTTGCCTTTTCAAATGATTGTTGCACCTTCAGGAGCATTTCACCTACTTTaGTGTGTTTCTTTTTCATGG | + |
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Preference number: 4 (lower is better) Translates to: WASGNEYLPFQMIVAPSGAFHLL*CVSFSW Trigger: CCATGAAAAAGAAACACAGCAAAGTAGGTGAAATGC...TCCTGAAGGTGCAACAATCATTTGAAAAGGCAAGTATTCATTCCCAGATGCCCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000159461.8 |
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| CDS-3UTR GCA 90 bp | CTTAATTTCACTAGTTCTGGAATTTCAGGAATAGAATGTGATCCTTGGCCAAGATTAGCACCAGGAATGTaGTGTCTGATGTCTGGTGTT | + |
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Preference number: 4 (lower is better) Translates to: LNFTSSGISGIECDPWPRLAPGM*CLMSGV Trigger: AACACCAGACATCAGACAGCACATTCCTGGTGCTAA...TCTTGGCCAAGGATCACATTCTATTCCTGAAATTCCAGAACTAGTGAAATTAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027012.14 |
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| CDS-3UTR GCA 90 bp | CTTAATTTCACTAGTTCTGGAATTTCAGGAATAGAATGTGATCCTTGGCCAAGAAAATGCCATGCAGTGTaGCATGAGACATTAGCACCA | + |
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Preference number: 4 (lower is better) Translates to: LNFTSSGISGIECDPWPRKCHAV*HETLAP Trigger: TGGTGCTAATGTCTCATGGCACACTGCATGGCATTT...TCTTGGCCAAGGATCACATTCTATTCCTGAAATTCCAGAACTAGTGAAATTAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027012.14 |
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| CDS-3UTR TCA 90 bp | TTCCTTAATTTCACTAGTTCTGGAATTTCAGGAATAGAATGTGATCCTTGGCCACTTGAGAGTGTTCAATaGTTCTTCTGGTTCCTCCAT | + |
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Preference number: 4 (lower is better) Translates to: FLNFTSSGISGIECDPWPLESVQ*FFWFLH Trigger: ATGGAGGAACCAGAAGAATCATTGAACACTCTCAAG...TGGCCAAGGATCACATTCTATTCCTGAAATTCCAGAACTAGTGAAATTAAGGAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027012.14 |
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| CDS-3UTR TCA 90 bp | CTTAATTTCACTAGTTCTGGAATTTCAGGAATAGAATGTGATCCTTGGCCAAGAGTTTTGAAGACTCTCTaGTCCACATTTCTCCAGAGT | + |
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Preference number: 4 (lower is better) Translates to: LNFTSSGISGIECDPWPRVLKTL*STFLQS Trigger: ACTCTGGAGAAATGTGGATCAGAGAGTCTTCAAAAC...TCTTGGCCAAGGATCACATTCTATTCCTGAAATTCCAGAACTAGTGAAATTAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027012.14 |
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| CDS-3UTR TCA 90 bp | TTCCTTAATTTCACTAGTTCTGGAATTTCAGGAATAGAATGTGATCCTTGGCCAGTGGGCATCTGGGAATaGATACTTGCCTTTTCAAAT | + |
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Preference number: 4 (lower is better) Translates to: FLNFTSSGISGIECDPWPVGIWE*ILAFSN Trigger: ATTTGAAAAGGCAAGTATTCATTCCCAGATGCCCAC...TGGCCAAGGATCACATTCTATTCCTGAAATTCCAGAACTAGTGAAATTAAGGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027012.14 |
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| CDS-3UTR TCA 90 bp | CTTAATTTCACTAGTTCTGGAATTTCAGGAATAGAATGTGATCCTTGGCCAAGAACTTGCCTTTTCAAATaGTTGTTGCACCTTCAGGAA | + |
|
Preference number: 4 (lower is better) Translates to: LNFTSSGISGIECDPWPRTCLFK*LLHLQE Trigger: TTCCTGAAGGTGCAACAATCATTTGAAAAGGCAAGT...TCTTGGCCAAGGATCACATTCTATTCCTGAAATTCCAGAACTAGTGAAATTAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027012.14 |
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| CDS-3UTR GCA 90 bp | ATACCCCACCTTGAGACCTGTGAATGTGTTTTCTACAACTTCTTTAACAGGATAGCATTTCACCTACTTTaGTGTGTTTCTTTTTCATGG | + |
|
Preference number: 4 (lower is better) Translates to: IPHLETCECVFYNFFNRIAFHLL*CVSFSW Trigger: CCATGAAAAAGAAACACAGCAAAGTAGGTGAAATGC...TATCCTGTTAAAGAAGTTGTAGAAAACACATTCACAGGTCTCAAGGTGGGGTAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000160064.8 |
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| CDS-3UTR CCA 90 bp | CTTAATTTCACTAGTTCTGGAATTTCAGGAATAGAATGTGATCCTTGGCCAAGATTCCAACACCTTAAGTaGTTTGTCAGGGTGTTTGTT | + |
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Preference number: 4 (lower is better) Translates to: LNFTSSGISGIECDPWPRFQHLK*FVRVFV Trigger: AACAAACACCCTGACAAACCACTTAAGGTGTTGGAA...TCTTGGCCAAGGATCACATTCTATTCCTGAAATTCCAGAACTAGTGAAATTAAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027012.14 |
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| CDS-3UTR TCA 90 bp | TTCCTTAATTTCACTAGTTCTGGAATTTCAGGAATAGAATGTGATCCTTGGCCAGACAGTGGCAATTGTTaGATATCTGATAGATGGTAT | + |
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Preference number: 4 (lower is better) Translates to: FLNFTSSGISGIECDPWPDSGNC*ISDRWY Trigger: ATACCATCTATCAGATATTCAACAATTGCCACTGTC...TGGCCAAGGATCACATTCTATTCCTGAAATTCCAGAACTAGTGAAATTAAGGAA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027012.14 |
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| CDS-3UTR GCA 90 bp | CTTAATTTCACTAGTTCTGGAATTTCAGGAATAGAATGTGATCCTTGGCCAAGAGCATTTCACCTACTTTaGTGTGTTTCTTTTTCATGG | + |
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Preference number: 4 (lower is better) Translates to: LNFTSSGISGIECDPWPRAFHLL*CVSFSW Trigger: CCATGAAAAAGAAACACAGCAAAGTAGGTGAAATGC...TCTTGGCCAAGGATCACATTCTATTCCTGAAATTCCAGAACTAGTGAAATTAAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027012.14 |
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| CDS-3UTR CCA 90 bp | TTCCTTAATTTCACTAGTTCTGGAATTTCAGGAATAGAATGTGATCCTTGGCCATGTGTTTCTTTTTCATaGCATCTACAAAAACCCAAC | + |
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Preference number: 4 (lower is better) Translates to: FLNFTSSGISGIECDPWPCVSFS*HLQKPN Trigger: GTTGGGTTTTTGTAGATGCCATGAAAAAGAAACACA...TGGCCAAGGATCACATTCTATTCCTGAAATTCCAGAACTAGTGAAATTAAGGAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000027012.14 |
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| CDS-3UTR CCA 90 bp | CTTAATTTCACTAGTTCTGGAATTTCAGGAATAGAATGTGATCCTTGGCCAAGAATTGGCCTCCTTTATTaGGTAAATTTCTTGTGTCTT | + |
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Preference number: 4 (lower is better) Translates to: LNFTSSGISGIECDPWPRIGLLY*VNFLCL Trigger: AAGACACAAGAAATTTACCCAATAAAGGAGGCCAAT...TCTTGGCCAAGGATCACATTCTATTCCTGAAATTCCAGAACTAGTGAAATTAAG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027012.14 |
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| CDS CCA 90 bp | GTGTACGGCCATTGGCCTCCTTTATTGGGTAAATCTTCACCATGGTaGCTGCCTGGGTCCACACTGAAGAATGTCTGGAGAAGCATTTCA | + |
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Preference number: 5 (lower is better) Translates to: VYGHWPPLLGKSSPW*LPGSTLKNVWRSIS Trigger: TGAAATGCTTCTCCAGACATTCTTCAGTGTGGACCCAGGCAGCCACCATGGTGAAGATTTACCCAATAAAGGAGGCCAATGGCCGTACAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000159461.8 ENSMUST00000160064.8 |
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| CDS CCA 90 bp | TTCGTGTACGGCCATTGGCCTCCTTTATTGGGTAAATCTTCACCATaGTGGCTGCCTGGGTCCACACTGAAGAATGTCTGGAGAAGCATT | + |
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Preference number: 5 (lower is better) Translates to: FVYGHWPPLLGKSSP*WLPGSTLKNVWRSI Trigger: AATGCTTCTCCAGACATTCTTCAGTGTGGACCCAGGCAGCCACCATGGTGAAGATTTACCCAATAAAGGAGGCCAATGGCCGTACACGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000159461.8 ENSMUST00000160064.8 |
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| CDS CCA 90 bp | TTCTGGTTCCTCCATTTCCAGATTAGCTTCACCATGGTGGCTGCCTaGGTCCACACTGAAGAATGTCTGGAGAAGCATTTCACCTACTTT | + |
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Preference number: 5 (lower is better) Translates to: FWFLHFQISFTMVAA*VHTEECLEKHFTYF Trigger: AAAGTAGGTGAAATGCTTCTCCAGACATTCTTCAGTGTGGACCCAGGCAGCCACCATGGTGAAGCTAATCTGGAAATGGAGGAACCAGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027012.14 ENSMUST00000162846.8 |
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| CDS CCA 90 bp | TTAGCTTCACCATGGTGGCTGCCTGGGTCCACACTGAAGAATGTCTaGAGAAGCATTTCACCTACTTTGCTGTGTTTCTTTTTCATGGCA | + |
|
Preference number: 5 (lower is better) Translates to: LASPWWLPGSTLKNV*RSISPTLLCFFFMA Trigger: TGCCATGAAAAAGAAACACAGCAAAGTAGGTGAAATGCTTCTCCAGACATTCTTCAGTGTGGACCCAGGCAGCCACCATGGTGAAGCTAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000027012.14 ENSMUST00000162846.8 |
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| CDS CCA 90 bp | AATGATTCTTCTGGTTCCTCCATTTCCAGATTAGCTTCACCATGGTaGCTGCCTGGGTCCACACTGAAGAATGTCTGGAGAAGCATTTCA | + |
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Preference number: 5 (lower is better) Translates to: NDSSGSSISRLASPW*LPGSTLKNVWRSIS Trigger: TGAAATGCTTCTCCAGACATTCTTCAGTGTGGACCCAGGCAGCCACCATGGTGAAGCTAATCTGGAAATGGAGGAACCAGAAGAATCATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027012.14 ENSMUST00000162846.8 |
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| CDS CCA 90 bp | TTCAATGATTCTTCTGGTTCCTCCATTTCCAGATTAGCTTCACCATaGTGGCTGCCTGGGTCCACACTGAAGAATGTCTGGAGAAGCATT | + |
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Preference number: 5 (lower is better) Translates to: FNDSSGSSISRLASP*WLPGSTLKNVWRSI Trigger: AATGCTTCTCCAGACATTCTTCAGTGTGGACCCAGGCAGCCACCATGGTGAAGCTAATCTGGAAATGGAGGAACCAGAAGAATCATTGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027012.14 ENSMUST00000162846.8 |
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| CDS CCA 90 bp | AAATCTTCACCATGGTGGCTGCCTGGGTCCACACTGAAGAATGTCTaGAGAAGCATTTCACCTACTTTGCTGTGTTTCTTTTTCATGGCA | + |
|
Preference number: 5 (lower is better) Translates to: KSSPWWLPGSTLKNV*RSISPTLLCFFFMA Trigger: TGCCATGAAAAAGAAACACAGCAAAGTAGGTGAAATGCTTCTCCAGACATTCTTCAGTGTGGACCCAGGCAGCCACCATGGTGAAGATTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000159461.8 ENSMUST00000160064.8 |
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| CDS TCA 90 bp | AAGCCTTGTGAACTCTTCAGGGGAACAAAGCTTGAGAGTGTTCAATaGTTCTTCTGGTTCCTCCATTTCCAGATTAGCTTCACCATGGTG | + |
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Preference number: 5 (lower is better) Translates to: KPCELFRGTKLESVQ*FFWFLHFQISFTMV Trigger: CACCATGGTGAAGCTAATCTGGAAATGGAGGAACCAGAAGAATCATTGAACACTCTCAAGCTTTGTTCCCCTGAAGAGTTCACAAGGCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027012.14 ENSMUST00000162846.8 |
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| CDS-3UTR CAA 90 bp | CCTCTGCACAACTGGGGTTTTGAAGACTCTCTGATCCACATTTCTCCAGAGTTCCTCAGTGAGAGATGTTaGAACTCTGTATTGCATATG | + |
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Preference number: 5 (lower is better) Translates to: PLHNWGFEDSLIHISPEFLSERC*NSVLHM Trigger: CATATGCAATACAGAGTTCAAACATCTCTCACTGAG...GAACTCTGGAGAAATGTGGATCAGAGAGTCTTCAAAACCCCAGTTGTGCAGAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000159461.8 ENSMUST00000160064.8 |
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| CDS-3UTR CAA 90 bp | GCAAGCATGTTTCCGGAAGCAGGAAATGAGTCTAGTGATGAAGTAAGAGCCTCCAGCATTTCACCTACTTaGCTGTGTTTCTTTTTCATG | + |
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Preference number: 5 (lower is better) Translates to: ASMFPEAGNESSDEVRASSISPT*LCFFFM Trigger: CATGAAAAAGAAACACAGCAAAGTAGGTGAAATGCT...GGAGGCTCTTACTTCATCACTAGACTCATTTCCTGCTTCCGGAAACATGCTTGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000159461.8 |
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| CDS-3UTR CAA 90 bp | CTTAATTTCACTAGTTCTGGAATTTCAGGAATAGAATGTGATCCTTGGCCAAGATCCACGTGGCTCAGCTaGACAGCATCAGCTTCCATA | + |
|
Preference number: 5 (lower is better) Translates to: LNFTSSGISGIECDPWPRSTWLS*TASASI Trigger: TATGGAAGCTGATGCTGTCAAGCTGAGCCACGTGGA...TCTTGGCCAAGGATCACATTCTATTCCTGAAATTCCAGAACTAGTGAAATTAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027012.14 |
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| CDS-3UTR CAA 90 bp | CTTAATTTCACTAGTTCTGGAATTTCAGGAATAGAATGTGATCCTTGGCCAAGAAATATCTCGTCAAGGTaGCCCGATCAATGGTGGGCA | + |
|
Preference number: 5 (lower is better) Translates to: LNFTSSGISGIECDPWPRNISSR*PDQWWA Trigger: TGCCCACCATTGATCGGGCAACCTTGACGAGATATT...TCTTGGCCAAGGATCACATTCTATTCCTGAAATTCCAGAACTAGTGAAATTAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027012.14 |
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| CDS-3UTR CAA 90 bp | TCAGCTTCCATATTCCTAGGTAGATCTACACCTCTGCACAACTGGGGTTTTGAAAGCATTTCACCTACTTaGCTGTGTTTCTTTTTCATG | + |
|
Preference number: 5 (lower is better) Translates to: SASIFLGRSTPLHNWGFESISPT*LCFFFM Trigger: CATGAAAAAGAAACACAGCAAAGTAGGTGAAATGCT...TTCAAAACCCCAGTTGTGCAGAGGTGTAGATCTACCTAGGAATATGGAAGCTGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000159461.8 ENSMUST00000160064.8 |
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| CDS-3UTR CAA 90 bp | CTTAATTTCACTAGTTCTGGAATTTCAGGAATAGAATGTGATCCTTGGCCAAGATGCACAATGATGACTTaGGGTTTGTCTCGTAGACCT | + |
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Preference number: 5 (lower is better) Translates to: LNFTSSGISGIECDPWPRCTMMT*GLSRRP Trigger: AGGTCTACGAGACAAACCCAAAGTCATCATTGTGCA...TCTTGGCCAAGGATCACATTCTATTCCTGAAATTCCAGAACTAGTGAAATTAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027012.14 |
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| CDS-3UTR CAA 90 bp | CTTAATTTCACTAGTTCTGGAATTTCAGGAATAGAATGTGATCCTTGGCCAAGACTCAGTGAGAGATGTTaGAACTCTGTATTGCATATG | + |
|
Preference number: 5 (lower is better) Translates to: LNFTSSGISGIECDPWPRLSERC*NSVLHM Trigger: CATATGCAATACAGAGTTCAAACATCTCTCACTGAG...TCTTGGCCAAGGATCACATTCTATTCCTGAAATTCCAGAACTAGTGAAATTAAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027012.14 |
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| CDS-3UTR CAA 90 bp | CTTAATTTCACTAGTTCTGGAATTTCAGGAATAGAATGTGATCCTTGGCCAAGAAGCATTTCACCTACTTaGCTGTGTTTCTTTTTCATG | + |
|
Preference number: 5 (lower is better) Translates to: LNFTSSGISGIECDPWPRSISPT*LCFFFM Trigger: CATGAAAAAGAAACACAGCAAAGTAGGTGAAATGCT...TCTTGGCCAAGGATCACATTCTATTCCTGAAATTCCAGAACTAGTGAAATTAAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027012.14 |
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| CDS CCA 72 bp | GGCCATTGGCCTCCTTTATTGGGTAAATCTTCACCATaGTGGCTGCCTGGGTCCACACTGAAGAATGTCTGG | + |
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Preference number: 6 (lower is better) Translates to: GHWPPLLGKSSP*WLPGSTLKNVW Trigger: CCAGACATTCTTCAGTGTGGACCCAGGCAGCCACCATGGTGAAGATTTACCCAATAAAGGAGGCCAATGGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000159461.8 ENSMUST00000160064.8 |
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| CDS CCA 72 bp | TCTTCTGGTTCCTCCATTTCCAGATTAGCTTCACCATaGTGGCTGCCTGGGTCCACACTGAAGAATGTCTGG | + |
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Preference number: 6 (lower is better) Translates to: SSGSSISRLASP*WLPGSTLKNVW Trigger: CCAGACATTCTTCAGTGTGGACCCAGGCAGCCACCATGGTGAAGCTAATCTGGAAATGGAGGAACCAGAAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027012.14 ENSMUST00000162846.8 |
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| CDS CCA 72 bp | CTCCATTTCCAGATTAGCTTCACCATGGTGGCTGCCTaGGTCCACACTGAAGAATGTCTGGAGAAGCATTTC | + |
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Preference number: 6 (lower is better) Translates to: LHFQISFTMVAA*VHTEECLEKHF Trigger: GAAATGCTTCTCCAGACATTCTTCAGTGTGGACCCAGGCAGCCACCATGGTGAAGCTAATCTGGAAATGGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027012.14 ENSMUST00000162846.8 |
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| CDS CCA 72 bp | CATTGGCCTCCTTTATTGGGTAAATCTTCACCATGGTaGCTGCCTGGGTCCACACTGAAGAATGTCTGGAGA | + |
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Preference number: 6 (lower is better) Translates to: HWPPLLGKSSPW*LPGSTLKNVWR Trigger: TCTCCAGACATTCTTCAGTGTGGACCCAGGCAGCCACCATGGTGAAGATTTACCCAATAAAGGAGGCCAATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000159461.8 ENSMUST00000160064.8 |
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| CDS CCA 72 bp | CCATGGTGGCTGCCTGGGTCCACACTGAAGAATGTCTaGAGAAGCATTTCACCTACTTTGCTGTGTTTCTTT | + |
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Preference number: 6 (lower is better) Translates to: PWWLPGSTLKNV*RSISPTLLCFF Trigger: AAAGAAACACAGCAAAGTAGGTGAAATGCTTCTCCAGACATTCTTCAGTGTGGACCCAGGCAGCCACCATGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000027012.14 ENSMUST00000159461.8 ENSMUST00000160064.8 ENSMUST00000162846.8 |
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| CDS CAA 90 bp | AGCCTTTCGTGTACGGCCATTGGCCTCCTTTATTGGGTAAATTTCTaGTGTCTTTTCTCTGCAAAGCCTTGTGAACTCTTCAGGGGAACA | + |
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Preference number: 6 (lower is better) Translates to: SLSCTAIGLLYWVNF*CLFSAKPCELFRGT Trigger: TGTTCCCCTGAAGAGTTCACAAGGCTTTGCAGAGAAAAGACACAAGAAATTTACCCAATAAAGGAGGCCAATGGCCGTACACGAAAGGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027012.14 ENSMUST00000162846.8 |
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| CDS CAA 72 bp | GCCCCATACCTCAGTGAGAGATGTTTGAACTCTGTATaGCATATGATAAGAGCCTTTCGTGTACGGCCATTG | + |
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Preference number: 6 (lower is better) Translates to: APYLSERCLNSV*HMIRAFRVRPL Trigger: CAATGGCCGTACACGAAAGGCTCTTATCATATGCAATACAGAGTTCAAACATCTCTCACTGAGGTATGGGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027012.14 ENSMUST00000159461.8 ENSMUST00000160064.8 |
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| CDS CAA 90 bp | CCTGGGTCCACACTGAAGAATGTCTGGAGAAGCATTTCACCTACTTaGCTGTGTTTCTTTTTCATGGCATCTACAAAAACCCAACGCTTG | + |
|
Preference number: 6 (lower is better) Translates to: PGSTLKNVWRSISPT*LCFFFMASTKTQRL Trigger: CAAGCGTTGGGTTTTTGTAGATGCCATGAAAAAGAAACACAGCAAAGTAGGTGAAATGCTTCTCCAGACATTCTTCAGTGTGGACCCAGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000027012.14 ENSMUST00000159461.8 ENSMUST00000160064.8 |
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| CDS CAA 72 bp | CTGCAAAGCCTTGTGAACTCTTCAGGGGAACAAAGCTaGAGAGTGTTCAATGATTCTTCTGGTTCCTCCATT | + |
|
Preference number: 6 (lower is better) Translates to: LQSLVNSSGEQS*RVFNDSSGSSI Trigger: AATGGAGGAACCAGAAGAATCATTGAACACTCTCAAGCTTTGTTCCCCTGAAGAGTTCACAAGGCTTTGCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027012.14 ENSMUST00000162846.8 |
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| CDS TCA 72 bp | GAACTCTTCAGGGGAACAAAGCTTGAGAGTGTTCAATaGTTCTTCTGGTTCCTCCATTTCCAGATTAGCTTC | + |
|
Preference number: 6 (lower is better) Translates to: ELFRGTKLESVQ*FFWFLHFQISF Trigger: GAAGCTAATCTGGAAATGGAGGAACCAGAAGAATCATTGAACACTCTCAAGCTTTGTTCCCCTGAAGAGTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027012.14 ENSMUST00000162846.8 |
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| CDS CAA 90 bp | ACATTGCTTTGTACTAATTTTTCTAGGTACTCCGTAAGGACTTCTTaGCCCAGCTGTTCCAACACCTTAAGTGGTTTGTCAGGGTGTTTG | + |
|
Preference number: 6 (lower is better) Translates to: TLLCTNFSRYSVRTS*PSCSNTLSGLSGCL Trigger: CAAACACCCTGACAAACCACTTAAGGTGTTGGAACAGCTGGGCAAAGAAGTCCTTACGGAGTACCTAGAAAAATTAGTACAAAGCAATGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000027012.14 ENSMUST00000160064.8 |
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| CDS CAA 90 bp | GTCTTTTCTCTGCAAAGCCTTGTGAACTCTTCAGGGGAACAAAGCTaGAGAGTGTTCAATGATTCTTCTGGTTCCTCCATTTCCAGATTA | + |
|
Preference number: 6 (lower is better) Translates to: VFSLQSLVNSSGEQS*RVFNDSSGSSISRL Trigger: TAATCTGGAAATGGAGGAACCAGAAGAATCATTGAACACTCTCAAGCTTTGTTCCCCTGAAGAGTTCACAAGGCTTTGCAGAGAAAAGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027012.14 ENSMUST00000162846.8 |
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| CDS CAA 90 bp | TTCATGGCATCTACAAAAACCCAACGCTTGTCACTGCGTTCAGCATaGTTAAATTTTTGTTTATCTTCCTCCTTTAATTTCAGTACATTG | + |
|
Preference number: 6 (lower is better) Translates to: FMASTKTQRLSLRSA*LNFCLSSSFNFSTL Trigger: CAATGTACTGAAATTAAAGGAGGAAGATAAACAAAAATTTAACAATGCTGAACGCAGTGACAAGCGTTGGGTTTTTGTAGATGCCATGAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000027012.14 ENSMUST00000160064.8 |
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