Pregenerated sensors for CASP3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031628Ensembl transcript IDs: ENSMUST00000093517.7, ENSMUST00000210534.2, ENSMUST00000211115.2
Found 68 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGGCAGGCCTTTTCTGAAGATGTGCCCATGGCTCTGCCAAGTCTCTaGTCTGGCTCAAACCACATTCTCTCCAACTACAGTAGATTTCAT | + |
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Preference number: 1 (lower is better) Translates to: WQAFSEDVPMALPSL*SGSNHILSNYSRFH Trigger: ATGAAATCTACTGTAGTTGGAGAGAATGTGGTTTGAGCCAGAGCAGAGACTTGGCAGAGCCATGGGCACATCTTCAGAAAAGGCCTGCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211115.2 |
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| 3UTR TCA 90 bp | CTTCAGACTCTCAGCCCTCTGGGAAAGCCTTTTTGCAGAAGTTTGTaGTCTGGTTCACTTTCCCACGTGGTAACTTGGACATCATCCACA | + |
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Preference number: 1 (lower is better) Translates to: LQTLSPLGKPFCRSL*SGSLSHVVTWTSST Trigger: TGTGGATGATGTCCAAGTTACCACGTGGGAAAGTGAACCAGATCACAAACTTCTGCAAAAAGGCTTTCCCAGAGGGCTGAGAGTCTGAAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000211115.2 |
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| 3UTR TCA 90 bp | CAACAGAAAAGTCAGCATGCTACAGACTCTGGACATGGAGTCCAGTaGACTTTCTTCAGACTCTCAGCCCTCTGGGAAAGCCTTTTTGCA | + |
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Preference number: 1 (lower is better) Translates to: QQKSQHATDSGHGVQ*TFFRLSALWESLFA Trigger: TGCAAAAAGGCTTTCCCAGAGGGCTGAGAGTCTGAAGAAAGTTCACTGGACTCCATGTCCAGAGTCTGTAGCATGCTGACTTTTCTGTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000211115.2 |
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| 3UTR TCA 90 bp | GTTAACAACAAAGCCAGTCTAAACAAGAATCTATCCGTTACAATGTaGGTTCCTTCCTTTCTTTGTGCAACAAGGAAGCTTAGGAGAAAT | + |
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Preference number: 1 (lower is better) Translates to: VNNKASLNKNLSVTM*VPSFLCATRKLRRN Trigger: ATTTCTCCTAAGCTTCCTTGTTGCACAAAGAAAGGAAGGAACTCACATTGTAACGGATAGATTCTTGTTTAGACTGGCTTTGTTGTTAAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211115.2 |
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| 3UTR-3UTR CCA 90 bp | CCAGGAGCAGAGCACAGTCTCCCTGAGGATGGACTGCAGCCCGCAGCTTCTCCAGCATGCTACAGACTCTaGACATGGAGTCCAGTGAAC | + |
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Preference number: 2 (lower is better) Translates to: PGAEHSLPEDGLQPAASPACYRL*TWSPVN Trigger: GTTCACTGGACTCCATGTCCAGAGTCTGTAGCATGC...TGGAGAAGCTGCGGGCTGCAGTCCATCCTCAGGGAGACTGTGCTCTGCTCCTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211115.2 |
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| 3UTR-3UTR GCA 90 bp | CATGGGCTGCAGGGCTATTGCTGGATGCTTTCCAAGTCCTGTGTGCCCTGGCCCGCTCTTGAGATATTTTaGTGGTCTGTAAGACCGAGC | + |
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Preference number: 2 (lower is better) Translates to: HGLQGYCWMLSKSCVPWPALEIF*WSVRPS Trigger: GCTCGGTCTTACAGACCAGCAAAATATCTCAAGAGC...GGGCCAGGGCACACAGGACTTGGAAAGCATCCAGCAATAGCCCTGCAGCCCATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211115.2 |
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| 3UTR-3UTR TCA 90 bp | CATGGGCTGCAGGGCTATTGCTGGATGCTTTCCAAGTCCTGTGTGCCCTGGCCCGTAAGAAACAAATGCTaGTGGATTTTAGCACCTTGC | + |
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Preference number: 2 (lower is better) Translates to: HGLQGYCWMLSKSCVPWPVRNKC*WILAPC Trigger: GCAAGGTGCTAAAATCCATCAGCATTTGTTTCTTAC...GGGCCAGGGCACACAGGACTTGGAAAGCATCCAGCAATAGCCCTGCAGCCCATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211115.2 |
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| 3UTR-3UTR CCA 90 bp | GCCTTTTTGCAGAAGTTTGTGATCTGGTTCACTTTCCCACGTGGTAACTTGGACGAGGTAGCTGCACTGTaGCTGGCTGCATTGCTAGGC | + |
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Preference number: 2 (lower is better) Translates to: AFLQKFVIWFTFPRGNLDEVAAL*LAALLG Trigger: GCCTAGCAATGCAGCCAGCCACAGTGCAGCTACCTC...GTCCAAGTTACCACGTGGGAAAGTGAACCAGATCACAAACTTCTGCAAAAAGGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000211115.2 |
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| 3UTR-3UTR CCA 90 bp | CATGGGCTGCAGGGCTATTGCTGGATGCTTTCCAAGTCCTGTGTGCCCTGGCCCGACAGCTTTCTCATTTaGCATAACAAAACAGAAACA | + |
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Preference number: 2 (lower is better) Translates to: HGLQGYCWMLSKSCVPWPDSFLI*HNKTET Trigger: TGTTTCTGTTTTGTTATGCCAAATGAGAAAGCTGTC...GGGCCAGGGCACACAGGACTTGGAAAGCATCCAGCAATAGCCCTGCAGCCCATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211115.2 |
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| 3UTR-3UTR TCA 90 bp | TTACAATGTGAGTTCCTTCCTTTCTTTGTGCAACAAGGAAGCTTAGGAGAAATGAGAGCACAGTCTCCCTaGGGATGGACTGCAGCCCGC | + |
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Preference number: 2 (lower is better) Translates to: LQCEFLPFFVQQGSLGEMRAQSP*GWTAAR Trigger: GCGGGCTGCAGTCCATCCTCAGGGAGACTGTGCTCT...CATTTCTCCTAAGCTTCCTTGTTGCACAAAGAAAGGAAGGAACTCACATTGTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211115.2 |
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| 3UTR-3UTR GCA 90 bp | GCCTTTTTGCAGAAGTTTGTGATCTGGTTCACTTTCCCACGTGGTAACTTGGACGCTCTGCCAAGTCTCTaGTCTGGCTCAAACCACATT | + |
|
Preference number: 2 (lower is better) Translates to: AFLQKFVIWFTFPRGNLDALPSL*SGSNHI Trigger: AATGTGGTTTGAGCCAGAGCAGAGACTTGGCAGAGC...GTCCAAGTTACCACGTGGGAAAGTGAACCAGATCACAAACTTCTGCAAAAAGGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000211115.2 |
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| 3UTR CAA 90 bp | TCCAGTGAACTTTCTTCAGACTCTCAGCCCTCTGGGAAAGCCTTTTaGCAGAAGTTTGTGATCTGGTTCACTTTCCCACGTGGTAACTTG | + |
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Preference number: 2 (lower is better) Translates to: SSELSSDSQPSGKAF*QKFVIWFTFPRGNL Trigger: CAAGTTACCACGTGGGAAAGTGAACCAGATCACAAACTTCTGCAAAAAGGCTTTCCCAGAGGGCTGAGAGTCTGAAGAAAGTTCACTGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211115.2 |
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| 3UTR CAA 90 bp | TGTATAAGGATAAGTAAGAAACAAATGCTGATGGATTTTAGCACCTaGCCTTCAATGAGTCAACCAAGTTCGCACACGGTTTTCCTCTCA | + |
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Preference number: 2 (lower is better) Translates to: CIRISKKQMLMDFST*PSMSQPSSHTVFLS Trigger: TGAGAGGAAAACCGTGTGCGAACTTGGTTGACTCATTGAAGGCAAGGTGCTAAAATCCATCAGCATTTGTTTCTTACTTATCCTTATACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211115.2 |
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| 3UTR GCA 72 bp | GGCCAGGAGCAGAGCACAGTCTCCCTGAGGATGGACTaGAGCCCGCAGCTTCTCCACATGGGCTGCAGGGCT | + |
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Preference number: 3 (lower is better) Translates to: GQEQSTVSLRMD*SPQLLHMGCRA Trigger: AGCCCTGCAGCCCATGTGGAGAAGCTGCGGGCTGCAGTCCATCCTCAGGGAGACTGTGCTCTGCTCCTGGCC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211115.2 |
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| 3UTR TCA 72 bp | CCCCATAAGGAGGCCAGGAGCAGAGCACAGTCTCCCTaGGGATGGACTGCAGCCCGCAGCTTCTCCACATGG | + |
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Preference number: 3 (lower is better) Translates to: PHKEARSRAQSP*GWTAARSFSTW Trigger: CCATGTGGAGAAGCTGCGGGCTGCAGTCCATCCTCAGGGAGACTGTGCTCTGCTCCTGGCCTCCTTATGGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211115.2 |
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| 3UTR CCA 72 bp | CCCGCAGCTTCTCCACATGGGCTGCAGGGCTATTGCTaGATGCTTTCCAAGTCCTGTGTGCCCTGGCCCTTT | + |
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Preference number: 3 (lower is better) Translates to: PAASPHGLQGYC*MLSKSCVPWPF Trigger: AAAGGGCCAGGGCACACAGGACTTGGAAAGCATCCAGCAATAGCCCTGCAGCCCATGTGGAGAAGCTGCGGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211115.2 |
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| 3UTR GCA 72 bp | GTGGGGAGTCCAGCTGGCAGGCCTTTTCTGAAGATGTaGCCATGGCTCTGCCAAGTCTCTGCTCTGGCTCAA | + |
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Preference number: 3 (lower is better) Translates to: VGSPAGRPFLKM*PWLCQVSALAQ Trigger: TTGAGCCAGAGCAGAGACTTGGCAGAGCCATGGGCACATCTTCAGAAAAGGCCTGCCAGCTGGACTCCCCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211115.2 |
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| 3UTR CCA 72 bp | AGTCCAGCTGGCAGGCCTTTTCTGAAGATGTGCCCATaGCTCTGCCAAGTCTCTGCTCTGGCTCAAACCACA | + |
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Preference number: 3 (lower is better) Translates to: SPAGRPFLKMCP*LCQVSALAQTT Trigger: TGTGGTTTGAGCCAGAGCAGAGACTTGGCAGAGCCATGGGCACATCTTCAGAAAAGGCCTGCCAGCTGGACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211115.2 |
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| 3UTR GCA 72 bp | GCTGGCAGGCCTTTTCTGAAGATGTGCCCATGGCTCTaGCAAGTCTCTGCTCTGGCTCAAACCACATTCTCT | + |
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Preference number: 3 (lower is better) Translates to: AGRPFLKMCPWL*QVSALAQTTFS Trigger: AGAGAATGTGGTTTGAGCCAGAGCAGAGACTTGGCAGAGCCATGGGCACATCTTCAGAAAAGGCCTGCCAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211115.2 |
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| 3UTR TCA 72 bp | CTCAGCCCTCTGGGAAAGCCTTTTTGCAGAAGTTTGTaGTCTGGTTCACTTTCCCACGTGGTAACTTGGACA | + |
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Preference number: 3 (lower is better) Translates to: LSPLGKPFCRSL*SGSLSHVVTWT Trigger: TGTCCAAGTTACCACGTGGGAAAGTGAACCAGATCACAAACTTCTGCAAAAAGGCTTTCCCAGAGGGCTGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000211115.2 |
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| 3UTR CCA 72 bp | TCAACAGAAAAGTCAGCATGCTACAGACTCTGGACATaGAGTCCAGTGAACTTTCTTCAGACTCTCAGCCCT | + |
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Preference number: 3 (lower is better) Translates to: STEKSACYRLWT*SPVNFLQTLSP Trigger: AGGGCTGAGAGTCTGAAGAAAGTTCACTGGACTCCATGTCCAGAGTCTGTAGCATGCTGACTTTTCTGTTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211115.2 |
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| 3UTR-3UTR CAA 90 bp | TTACAATGTGAGTTCCTTCCTTTCTTTGTGCAACAAGGAAGCTTAGGAGAAATGTTCCCACGTGGTAACTaGGACATCATCCACACAAAC | + |
|
Preference number: 3 (lower is better) Translates to: LQCEFLPFFVQQGSLGEMFPRGN*DIIHTN Trigger: GTTTGTGTGGATGATGTCCAAGTTACCACGTGGGAA...CATTTCTCCTAAGCTTCCTTGTTGCACAAAGAAAGGAAGGAACTCACATTGTAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211115.2 |
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| 3UTR TCA 72 bp | TCCATAAATCAGGTCCAAAACAAGGGTTCCAGCCTTTaGCTCTGCTCATGGATTCAAGTTCTAAGACATTAT | + |
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Preference number: 3 (lower is better) Translates to: SINQVQNKGSSL*LCSWIQVLRHY Trigger: ATAATGTCTTAGAACTTGAATCCATGAGCAGAGTCAAAGGCTGGAACCCTTGTTTTGGACCTGATTTATGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093517.7 ENSMUST00000211115.2 |
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| 3UTR TCA 72 bp | ATAATCAACCATTTGAGGCTGTTACATAACAGCTCTTaGGATATTTTGCTGGTCTGTAAGACCGAGCTGATT | + |
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Preference number: 3 (lower is better) Translates to: IINHLRLLHNSS*DILLVCKTELI Trigger: AATCAGCTCGGTCTTACAGACCAGCAAAATATCTCAAGAGCTGTTATGTAACAGCCTCAAATGGTTGATTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211115.2 |
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| 3UTR TCA 72 bp | AAAGCCAGTCTAAACAAGAATCTATCCGTTACAATGTaGGTTCCTTCCTTTCTTTGTGCAACAAGGAAGCTT | + |
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Preference number: 3 (lower is better) Translates to: KASLNKNLSVTM*VPSFLCATRKL Trigger: AAGCTTCCTTGTTGCACAAAGAAAGGAAGGAACTCACATTGTAACGGATAGATTCTTGTTTAGACTGGCTTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000210534.2 ENSMUST00000211115.2 |
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| 3UTR CAA 72 bp | GCAGCCCGCAGCTTCTCCACATGGGCTGCAGGGCTATaGCTGGATGCTTTCCAAGTCCTGTGTGCCCTGGCC | + |
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Preference number: 4 (lower is better) Translates to: AARSFSTWAAGL*LDAFQVLCALA Trigger: GGCCAGGGCACACAGGACTTGGAAAGCATCCAGCAATAGCCCTGCAGCCCATGTGGAGAAGCTGCGGGCTGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211115.2 |
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| CDS-3UTR TCA 90 bp | ATTTCATTTCAACTACCTGATGTCGAAGTTGAGGTAGCTGCACTGTGGCTGGCTGTACCCCGGCAGGCCTaGATGATGAAGAGTTTCGGC | + |
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Preference number: 4 (lower is better) Translates to: ISFQLPDVEVEVAALWLAVPRQA*MMKSFG Trigger: GCCGAAACTCTTCATCATTCAGGCCTGCCGGGGTAC...AGCCAGCCACAGTGCAGCTACCTCAACTTCGACATCAGGTAGTTGAAATGAAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093517.7 ENSMUST00000211115.2 |
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| CDS-3UTR GCA 90 bp | GAGAGTCTCCCTGACAGCTTTCTCATTTGGCATAACAAAACAGAAACACGCCCCCGGGATCTGTTTCTTTaGGTGGAAAGTGGAGTCCAG | + |
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Preference number: 4 (lower is better) Translates to: ESLPDSFLIWHNKTETRPRDLFL*VESGVQ Trigger: CTGGACTCCACTTTCCACGCAAAGAAACAGATCCCG...GGGGCGTGTTTCTGTTTTGTTATGCCAAATGAGAAAGCTGTCAGGGAGACTCTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000093517.7 ENSMUST00000211115.2 |
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| CDS-3UTR CCA 90 bp | AGAGTCTCCCTGACAGCTTTCTCATTTGGCATAACAAAACAGAAACACGCCCCCTCTTTGCGTGGAAAGTaGAGTCCAGGGAGAAGGACT | + |
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Preference number: 4 (lower is better) Translates to: RVSLTAFSFGITKQKHAPSLRGK*SPGRRT Trigger: AGTCCTTCTCCCTGGACTCCACTTTCCACGCAAAGA...GGGGGCGTGTTTCTGTTTTGTTATGCCAAATGAGAAAGCTGTCAGGGAGACTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000093517.7 ENSMUST00000211115.2 |
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| CDS-3UTR TCA 90 bp | AGAGTCTCCCTGACAGCTTTCTCATTTGGCATAACAAAACAGAAACACGCCCCCCATTTGTCCCATAAATaGCCCCTTCATCACCATGGC | + |
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Preference number: 4 (lower is better) Translates to: RVSLTAFSFGITKQKHAPHLSHK*PLHHHG Trigger: GCCATGGTGATGAAGGGGTCATTTATGGGACAAATG...GGGGGCGTGTTTCTGTTTTGTTATGCCAAATGAGAAAGCTGTCAGGGAGACTCT 48% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000093517.7 ENSMUST00000211115.2 |
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| CDS-3UTR GCA 90 bp | GGTCCAAAACAAGGGTTCCAGCCTTTGACTCTGCTCATGGATTCAAGTTCTAAGCGGGATCTGTTTCTTTaGGTGGAAAGTGGAGTCCAG | + |
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Preference number: 4 (lower is better) Translates to: GPKQGFQPLTLLMDSSSKRDLFL*VESGVQ Trigger: CTGGACTCCACTTTCCACGCAAAGAAACAGATCCCG...CTTAGAACTTGAATCCATGAGCAGAGTCAAAGGCTGGAACCCTTGTTTTGGACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093517.7 ENSMUST00000211115.2 |
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| CDS-3UTR TCA 90 bp | AGCCAGTCTAAACAAGAATCTATCCGTTACAATGTGAGTTCCTTCCTTTCTTTGGTACCCCGGCAGGCCTaGATGATGAAGAGTTTCGGC | + |
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Preference number: 4 (lower is better) Translates to: SQSKQESIRYNVSSFLSLVPRQA*MMKSFG Trigger: GCCGAAACTCTTCATCATTCAGGCCTGCCGGGGTAC...CAAAGAAAGGAAGGAACTCACATTGTAACGGATAGATTCTTGTTTAGACTGGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211115.2 |
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| CDS-3UTR TCA 90 bp | GGTCCAAAACAAGGGTTCCAGCCTTTGACTCTGCTCATGGATTCAAGTTCTAAGCCACGACCCGTCCTTTaGATTTCTCCAGGAATAGTA | + |
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Preference number: 4 (lower is better) Translates to: GPKQGFQPLTLLMDSSSKPRPVL*ISPGIV Trigger: TACTATTCCTGGAGAAATTCAAAGGACGGGTCGTGG...CTTAGAACTTGAATCCATGAGCAGAGTCAAAGGCTGGAACCCTTGTTTTGGACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093517.7 ENSMUST00000211115.2 |
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| CDS-3UTR GCA 90 bp | AGAGTCTCCCTGACAGCTTTCTCATTTGGCATAACAAAACAGAAACACGCCCCCCAGAGTCCACTGACTTaGTCCCATGTATGGTCTTTA | + |
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Preference number: 4 (lower is better) Translates to: RVSLTAFSFGITKQKHAPQSPLT*SHVWSL Trigger: TAAAGACCATACATGGGAGCAAGTCAGTGGACTCTG...GGGGGCGTGTTTCTGTTTTGTTATGCCAAATGAGAAAGCTGTCAGGGAGACTCT 47% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000093517.7 ENSMUST00000211115.2 |
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| CDS-3UTR CCA 90 bp | GAGAGTCTCCCTGACAGCTTTCTCATTTGGCATAACAAAACAGAAACACGCCCCACCCCTTCATCACCATaGCTTAGAATCACACACACA | + |
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Preference number: 4 (lower is better) Translates to: ESLPDSFLIWHNKTETRPTPSSP*LRITHT Trigger: TGTGTGTGTGATTCTAAGCCATGGTGATGAAGGGGT...GGGGCGTGTTTCTGTTTTGTTATGCCAAATGAGAAAGCTGTCAGGGAGACTCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000093517.7 ENSMUST00000211115.2 |
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| CDS-3UTR GCA 90 bp | AGAGTCTCCCTGACAGCTTTCTCATTTGGCATAACAAAACAGAAACACGCCCCCTCACACACACAAAGCTaGTCCTTTTGCTATGATCTT | + |
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Preference number: 4 (lower is better) Translates to: RVSLTAFSFGITKQKHAPSHTQS*SFCYDL Trigger: AAGATCATAGCAAAAGGAGCAGCTTTGTGTGTGTGA...GGGGGCGTGTTTCTGTTTTGTTATGCCAAATGAGAAAGCTGTCAGGGAGACTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000093517.7 ENSMUST00000211115.2 |
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| CDS-3UTR GCA 90 bp | CCGTTACAATGTGAGTTCCTTCCTTTCTTTGTGCAACAAGGAAGCTTAGGAGAACAGAGTCCACTGACTTaGTCCCATGTATGGTCTTTA | + |
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Preference number: 4 (lower is better) Translates to: PLQCEFLPFFVQQGSLGEQSPLT*SHVWSL Trigger: TAAAGACCATACATGGGAGCAAGTCAGTGGACTCTG...TTCTCCTAAGCTTCCTTGTTGCACAAAGAAAGGAAGGAACTCACATTGTAACGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000210534.2 ENSMUST00000211115.2 |
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| CDS-3UTR GCA 90 bp | GCCTTTTTGCAGAAGTTTGTGATCTGGTTCACTTTCCCACGTGGTAACTTGGACTCACACACACAAAGCTaGTCCTTTTGCTATGATCTT | + |
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Preference number: 4 (lower is better) Translates to: AFLQKFVIWFTFPRGNLDSHTQS*SFCYDL Trigger: AAGATCATAGCAAAAGGAGCAGCTTTGTGTGTGTGA...GTCCAAGTTACCACGTGGGAAAGTGAACCAGATCACAAACTTCTGCAAAAAGGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000211115.2 |
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| CDS-3UTR CCA 90 bp | AGCCAGTCTAAACAAGAATCTATCCGTTACAATGTGAGTTCCTTCCTTTCTTTGTCTTTGCGTGGAAAGTaGAGTCCAGGGAGAAGGACT | + |
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Preference number: 4 (lower is better) Translates to: SQSKQESIRYNVSSFLSLSLRGK*SPGRRT Trigger: AGTCCTTCTCCCTGGACTCCACTTTCCACGCAAAGA...CAAAGAAAGGAAGGAACTCACATTGTAACGGATAGATTCTTGTTTAGACTGGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211115.2 |
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| CDS-3UTR TCA 90 bp | TTACAATGTGAGTTCCTTCCTTTCTTTGTGCAACAAGGAAGCTTAGGAGAAATGCATTTGTCCCATAAATaGCCCCTTCATCACCATGGC | + |
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Preference number: 4 (lower is better) Translates to: LQCEFLPFFVQQGSLGEMHLSHK*PLHHHG Trigger: GCCATGGTGATGAAGGGGTCATTTATGGGACAAATG...CATTTCTCCTAAGCTTCCTTGTTGCACAAAGAAAGGAAGGAACTCACATTGTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211115.2 |
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| CDS-3UTR GCA 90 bp | CAAGAATCTATCCGTTACAATGTGAGTTCCTTCCTTTCTTTGTGCAACAAGGAACAGAGTCCACTGACTTaGTCCCATGTATGGTCTTTA | + |
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Preference number: 4 (lower is better) Translates to: QESIRYNVSSFLSLCNKEQSPLT*SHVWSL Trigger: TAAAGACCATACATGGGAGCAAGTCAGTGGACTCTG...TTCCTTGTTGCACAAAGAAAGGAAGGAACTCACATTGTAACGGATAGATTCTTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000210534.2 ENSMUST00000211115.2 |
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| CDS-3UTR CCA 90 bp | ATTTCATTTCAACTACCTGATGTCGAAGTTGAGGTAGCTGCACTGTGGCTGGCTTTTTTATTCCTGACTTaGTATTTCAGGCCCATGAAT | + |
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Preference number: 4 (lower is better) Translates to: ISFQLPDVEVEVAALWLAFLFLT*YFRPMN Trigger: ATTCATGGGCCTGAAATACCAAGTCAGGAATAAAAA...AGCCAGCCACAGTGCAGCTACCTCAACTTCGACATCAGGTAGTTGAAATGAAAT 41% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 2 transcripts: ENSMUST00000093517.7 ENSMUST00000211115.2 |
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| CDS-3UTR CCA 90 bp | AGCCAGTCTAAACAAGAATCTATCCGTTACAATGTGAGTTCCTTCCTTTCTTTGACCCCTTCATCACCATaGCTTAGAATCACACACACA | + |
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Preference number: 4 (lower is better) Translates to: SQSKQESIRYNVSSFLSLTPSSP*LRITHT Trigger: TGTGTGTGTGATTCTAAGCCATGGTGATGAAGGGGT...CAAAGAAAGGAAGGAACTCACATTGTAACGGATAGATTCTTGTTTAGACTGGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211115.2 |
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| CDS-3UTR CCA 90 bp | TTAAATGAGAGTCTCCCTGACAGCTTTCTCATTTGGCATAACAAAACAGAAACAATCTGTTTCTTTGCGTaGAAAGTGGAGTCCAGGGAG | + |
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Preference number: 4 (lower is better) Translates to: LNESLPDSFLIWHNKTETICFFA*KVESRE Trigger: CTCCCTGGACTCCACTTTCCACGCAAAGAAACAGAT...TGTTTCTGTTTTGTTATGCCAAATGAGAAAGCTGTCAGGGAGACTCTCATTTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093517.7 ENSMUST00000211115.2 |
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| CDS-3UTR CCA 90 bp | AAAGCTGTACTGCTTCAAAATGACTTCAAAATTCATAGTATCGCCAAATCTTGCATCTGTTTCTTTGCGTaGAAAGTGGAGTCCAGGGAG | + |
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Preference number: 4 (lower is better) Translates to: KAVLLQNDFKIHSIAKSCICFFA*KVESRE Trigger: CTCCCTGGACTCCACTTTCCACGCAAAGAAACAGAT...GCAAGATTTGGCGATACTATGAATTTTGAAGTCATTTTGAAGCAGTACAGCTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093517.7 ENSMUST00000211115.2 |
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| CDS-3UTR CCA 90 bp | AGCCAGTCTAAACAAGAATCTATCCGTTACAATGTGAGTTCCTTCCTTTCTTTGGGACCTGCTTTGAATTaGTTCTATCTTACCACTATC | + |
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Preference number: 4 (lower is better) Translates to: SQSKQESIRYNVSSFLSLGPALN*FYLTTI Trigger: GATAGTGGTAAGATAGAACCAATTCAAAGCAGGTCC...CAAAGAAAGGAAGGAACTCACATTGTAACGGATAGATTCTTGTTTAGACTGGCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210534.2 |
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| CDS-3UTR CCA 90 bp | AATGCATGCTATGGTGGTCCAACTCTTCACTTCCATAAATCAGGTCCAAAACAATTTTTATTCCTGACTTaGTATTTCAGGCCCATGAAT | + |
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Preference number: 4 (lower is better) Translates to: NACYGGPTLHFHKSGPKQFLFLT*YFRPMN Trigger: ATTCATGGGCCTGAAATACCAAGTCAGGAATAAAAA...TTGTTTTGGACCTGATTTATGGAAGTGAAGAGTTGGACCACCATAGCATGCATT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000093517.7 ENSMUST00000211115.2 |
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| CDS-3UTR CCA 90 bp | ATCTATCCGTTACAATGTGAGTTCCTTCCTTTCTTTGTGCAACAAGGAAGCTTATTTTTATTCCTGACTTaGTATTTCAGGCCCATGAAT | + |
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Preference number: 4 (lower is better) Translates to: IYPLQCEFLPFFVQQGSLFLFLT*YFRPMN Trigger: ATTCATGGGCCTGAAATACCAAGTCAGGAATAAAAA...TAAGCTTCCTTGTTGCACAAAGAAAGGAAGGAACTCACATTGTAACGGATAGAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000210534.2 ENSMUST00000211115.2 |
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| CDS GCA 90 bp | ACCTTCCTGTTAACGCGAGTGAGAATGTGCATAAATTCTAGCTTGTaGGCGTACAGCTTCAGCATGCTGCAAAGGGACTGGATGAACCAC | + |
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Preference number: 5 (lower is better) Translates to: TFLLTRVRMCINSSL*AYSFSMLQRDWMNH Trigger: GTGGTTCATCCAGTCCCTTTGCAGCATGCTGAAGCTGTACGCGCACAAGCTAGAATTTATGCACATTCTCACTCGCGTTAACAGGAAGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093517.7 ENSMUST00000211115.2 |
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| CDS GCA 90 bp | GACTCGAATTCCGTTGCCACCTTCCTGTTAACGCGAGTGAGAATGTaGATAAATTCTAGCTTGTGCGCGTACAGCTTCAGCATGCTGCAA | + |
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Preference number: 5 (lower is better) Translates to: DSNSVATFLLTRVRM*INSSLCAYSFSMLQ Trigger: TTGCAGCATGCTGAAGCTGTACGCGCACAAGCTAGAATTTATGCACATTCTCACTCGCGTTAACAGGAAGGTGGCAACGGAATTCGAGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093517.7 ENSMUST00000211115.2 |
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| CDS-3UTR CAA 90 bp | GAGAGTCTCCCTGACAGCTTTCTCATTTGGCATAACAAAACAGAAACACGCCCCACGGGATCTGTTTCTTaGCGTGGAAAGTGGAGTCCA | + |
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Preference number: 5 (lower is better) Translates to: ESLPDSFLIWHNKTETRPTGSVS*RGKWSP Trigger: TGGACTCCACTTTCCACGCAAAGAAACAGATCCCGT...GGGGCGTGTTTCTGTTTTGTTATGCCAAATGAGAAAGCTGTCAGGGAGACTCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093517.7 ENSMUST00000211115.2 |
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| CDS TCA 90 bp | CTTCAGCATGCTGCAAAGGGACTGGATGAACCACGACCCGTCCTTTaGATTTCTCCAGGAATAGTAACCAGGTGCTGTAGAGTAAGCATA | + |
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Preference number: 5 (lower is better) Translates to: LQHAAKGLDEPRPVL*ISPGIVTRCCRVSI Trigger: TATGCTTACTCTACAGCACCTGGTTACTATTCCTGGAGAAATTCAAAGGACGGGTCGTGGTTCATCCAGTCCCTTTGCAGCATGCTGAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093517.7 ENSMUST00000211115.2 |
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| CDS-3UTR CAA 90 bp | GGTCCAAAACAAGGGTTCCAGCCTTTGACTCTGCTCATGGATTCAAGTTCTAAGCCAGAGTCCACTGACTaGCTCCCATGTATGGTCTTT | + |
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Preference number: 5 (lower is better) Translates to: GPKQGFQPLTLLMDSSSKPESTD*LPCMVF Trigger: AAAGACCATACATGGGAGCAAGTCAGTGGACTCTGG...CTTAGAACTTGAATCCATGAGCAGAGTCAAAGGCTGGAACCCTTGTTTTGGACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093517.7 ENSMUST00000211115.2 |
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| CDS-3UTR CAA 90 bp | ATGCATGCTATGGTGGTCCAACTCTTCACTTCCATAAATCAGGTCCAAAACAAGACCACGACCCGTCCTTaGAATTTCTCCAGGAATAGT | + |
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Preference number: 5 (lower is better) Translates to: MHAMVVQLFTSINQVQNKTTTRP*NFSRNS Trigger: ACTATTCCTGGAGAAATTCAAAGGACGGGTCGTGGT...CTTGTTTTGGACCTGATTTATGGAAGTGAAGAGTTGGACCACCATAGCATGCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093517.7 ENSMUST00000211115.2 |
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| CDS-3UTR CAA 90 bp | CAAGAATCTATCCGTTACAATGTGAGTTCCTTCCTTTCTTTGTGCAACAAGGAACCAGAGTCCACTGACTaGCTCCCATGTATGGTCTTT | + |
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Preference number: 5 (lower is better) Translates to: QESIRYNVSSFLSLCNKEPESTD*LPCMVF Trigger: AAAGACCATACATGGGAGCAAGTCAGTGGACTCTGG...TTCCTTGTTGCACAAAGAAAGGAAGGAACTCACATTGTAACGGATAGATTCTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000210534.2 ENSMUST00000211115.2 |
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| CDS-3UTR CAA 90 bp | CAGTCTAAACAAGAATCTATCCGTTACAATGTGAGTTCCTTCCTTTCTTTGTGCCCAGAGTCCACTGACTaGCTCCCATGTATGGTCTTT | + |
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Preference number: 5 (lower is better) Translates to: QSKQESIRYNVSSFLSLCPESTD*LPCMVF Trigger: AAAGACCATACATGGGAGCAAGTCAGTGGACTCTGG...GCACAAAGAAAGGAAGGAACTCACATTGTAACGGATAGATTCTTGTTTAGACTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000210534.2 ENSMUST00000211115.2 |
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| CDS-3UTR CAA 90 bp | GGGTTCCAGCCTTTGACTCTGCTCATGGATTCAAGTTCTAAGACATTATCATTTACCACGACCCGTCCTTaGAATTTCTCCAGGAATAGT | + |
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Preference number: 5 (lower is better) Translates to: GFQPLTLLMDSSSKTLSFTTTRP*NFSRNS Trigger: ACTATTCCTGGAGAAATTCAAAGGACGGGTCGTGGT...AAATGATAATGTCTTAGAACTTGAATCCATGAGCAGAGTCAAAGGCTGGAACCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093517.7 ENSMUST00000211115.2 |
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| CDS-3UTR CAA 90 bp | GGTCCAAAACAAGGGTTCCAGCCTTTGACTCTGCTCATGGATTCAAGTTCTAAGATTTTTATTCCTGACTaGGTATTTCAGGCCCATGAA | + |
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Preference number: 5 (lower is better) Translates to: GPKQGFQPLTLLMDSSSKIFIPD*VFQAHE Trigger: TTCATGGGCCTGAAATACCAAGTCAGGAATAAAAAT...CTTAGAACTTGAATCCATGAGCAGAGTCAAAGGCTGGAACCCTTGTTTTGGACC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000093517.7 ENSMUST00000211115.2 |
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| CDS-3UTR CAA 90 bp | TTAAATGAGAGTCTCCCTGACAGCTTTCTCATTTGGCATAACAAAACAGAAACAACGGGATCTGTTTCTTaGCGTGGAAAGTGGAGTCCA | + |
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Preference number: 5 (lower is better) Translates to: LNESLPDSFLIWHNKTETTGSVS*RGKWSP Trigger: TGGACTCCACTTTCCACGCAAAGAAACAGATCCCGT...TGTTTCTGTTTTGTTATGCCAAATGAGAAAGCTGTCAGGGAGACTCTCATTTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093517.7 ENSMUST00000211115.2 |
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| CDS-3UTR CAA 90 bp | TTACAATGTGAGTTCCTTCCTTTCTTTGTGCAACAAGGAAGCTTAGGAGAAATGATTTTTATTCCTGACTaGGTATTTCAGGCCCATGAA | + |
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Preference number: 5 (lower is better) Translates to: LQCEFLPFFVQQGSLGEMIFIPD*VFQAHE Trigger: TTCATGGGCCTGAAATACCAAGTCAGGAATAAAAAT...CATTTCTCCTAAGCTTCCTTGTTGCACAAAGAAAGGAAGGAACTCACATTGTAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000210534.2 ENSMUST00000211115.2 |
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| CDS TCA 90 bp | ATAATCCATTTTGTAACTACTGTCCAGATAGATCCCAGAGTCCACTaGCTTGCTCCCATGTATGGTCTTTACTTCAAAATTATTAATGGA | + |
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Preference number: 5 (lower is better) Translates to: IIHFVTTVQIDPRVH*LAPMYGLYFKIING Trigger: TCCATTAATAATTTTGAAGTAAAGACCATACATGGGAGCAAGTCAGTGGACTCTGGGATCTATCTGGACAGTAGTTACAAAATGGATTAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000093517.7 ENSMUST00000210534.2 ENSMUST00000211115.2 |
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| CDS TCA 72 bp | GCGCGTACAGCTTCAGCATGCTGCAAAGGGACTGGATaGACCACGACCCGTCCTTTGAATTTCTCCAGGAAT | + |
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Preference number: 6 (lower is better) Translates to: ARTASACCKGTG*TTTRPLNFSRN Trigger: ATTCCTGGAGAAATTCAAAGGACGGGTCGTGGTTCATCCAGTCCCTTTGCAGCATGCTGAAGCTGTACGCGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093517.7 ENSMUST00000211115.2 |
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| CDS GCA 72 bp | GAAAGTGGAGTCCAGGGAGAAGGACTCGAATTCCGTTaGCACCTTCCTGTTAACGCGAGTGAGAATGTGCAT | + |
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Preference number: 6 (lower is better) Translates to: ESGVQGEGLEFR*HLPVNASENVH Trigger: ATGCACATTCTCACTCGCGTTAACAGGAAGGTGGCAACGGAATTCGAGTCCTTCTCCCTGGACTCCACTTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093517.7 ENSMUST00000211115.2 |
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| CDS CAA 90 bp | GCCACCTTCCTGTTAACGCGAGTGAGAATGTGCATAAATTCTAGCTaGTGCGCGTACAGCTTCAGCATGCTGCAAAGGGACTGGATGAAC | + |
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Preference number: 6 (lower is better) Translates to: ATFLLTRVRMCINSS*CAYSFSMLQRDWMN Trigger: GTTCATCCAGTCCCTTTGCAGCATGCTGAAGCTGTACGCGCACAAGCTAGAATTTATGCACATTCTCACTCGCGTTAACAGGAAGGTGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093517.7 ENSMUST00000211115.2 |
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| CDS CCA 72 bp | ACACAATACACGGGATCTGTTTCTTTGCGTGGAAAGTaGAGTCCAGGGAGAAGGACTCGAATTCCGTTGCCA | + |
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Preference number: 6 (lower is better) Translates to: TQYTGSVSLRGK*SPGRRTRIPLP Trigger: TGGCAACGGAATTCGAGTCCTTCTCCCTGGACTCCACTTTCCACGCAAAGAAACAGATCCCGTGTATTGTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093517.7 ENSMUST00000211115.2 |
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| CDS CCA 72 bp | AGCATGGACACAATACACGGGATCTGTTTCTTTGCGTaGAAAGTGGAGTCCAGGGAGAAGGACTCGAATTCC | + |
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Preference number: 6 (lower is better) Translates to: SMDTIHGICFFA*KVESREKDSNS Trigger: GGAATTCGAGTCCTTCTCCCTGGACTCCACTTTCCACGCAAAGAAACAGATCCCGTGTATTGTGTCCATGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093517.7 ENSMUST00000211115.2 |
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| CDS GCA 72 bp | TTAACGCGAGTGAGAATGTGCATAAATTCTAGCTTGTaGGCGTACAGCTTCAGCATGCTGCAAAGGGACTGG | + |
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Preference number: 6 (lower is better) Translates to: LTRVRMCINSSL*AYSFSMLQRDW Trigger: CCAGTCCCTTTGCAGCATGCTGAAGCTGTACGCGCACAAGCTAGAATTTATGCACATTCTCACTCGCGTTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093517.7 ENSMUST00000211115.2 |
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| CDS CAA 72 bp | CTGTTAACGCGAGTGAGAATGTGCATAAATTCTAGCTaGTGCGCGTACAGCTTCAGCATGCTGCAAAGGGAC | + |
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Preference number: 6 (lower is better) Translates to: LLTRVRMCINSS*CAYSFSMLQRD Trigger: GTCCCTTTGCAGCATGCTGAAGCTGTACGCGCACAAGCTAGAATTTATGCACATTCTCACTCGCGTTAACAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093517.7 ENSMUST00000211115.2 |
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