RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CASP2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000029863

Ensembl transcript IDs: ENSMUST00000031895.13, ENSMUST00000156829.8

Found 159 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TGTCGGCCACGTGCATGTCACAAGCTCTTTCAGAGAACACCTGAGTaGGGGCCTCAATGTACCAGGAACCCCGTTTGGTGTTCCGCATGG +
Preference number: 1 (lower is better)
Translates to: CRPRACHKLFQRTPE*GPQCTRNPVWCSAW
Trigger: CCATGCGGAACACCAAACGGGGTTCCTGGTACATTGAGGCCCTCACTCAGGTGTTCTCTGAAAGAGCTTGTGACATGCACGTGGCCGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
3UTR TCA 90 bp AGCATGTCGGCCACGTGCATGTCACAAGCTCTTTCAGAGAACACCTaGGTGAGGGCCTCAATGTACCAGGAACCCCGTTTGGTGTTCCGC +
Preference number: 1 (lower is better)
Translates to: SMSATCMSQALSENT*VRASMYQEPRLVFR
Trigger: GCGGAACACCAAACGGGGTTCCTGGTACATTGAGGCCCTCACTCAGGTGTTCTCTGAAAGAGCTTGTGACATGCACGTGGCCGACATGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
3UTR TCA 90 bp CATGGCAGCATTACCTTTAAGGCAAGCATAGCCACATATCATGTCTaGGCGAGTAGGCAGTCTCATCTTCATCAACTCCTCTTTGCCAGC +
Preference number: 1 (lower is better)
Translates to: HGSITFKASIATYHV*ASRQSHLHQLLFAS
Trigger: GCTGGCAAAGAGGAGTTGATGAAGATGAGACTGCCTACTCGCTCAGACATGATATGTGGCTATGCTTGCCTTAAAGGTAATGCTGCCATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
3UTR TCA 90 bp CAGAGATGGCTGACAGGAAACAAGCCTGGGAGAATCTCATATCCCTaGGAGGGTAGACAGAACAAAAACCATTCTGAAGAGAAGTCTCCA +
Preference number: 1 (lower is better)
Translates to: QRWLTGNKPGRISYP*EGRQNKNHSEEKSP
Trigger: TGGAGACTTCTCTTCAGAATGGTTTTTGTTCTGTCTACCCTCTCAGGGATATGAGATTCTCCCAGGCTTGTTTCCTGTCAGCCATCTCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
3UTR GCA 90 bp CAACAAACATTAGTTGAGCACCTCAACTACCATAGGCCTCAAATTTaGTGGGCACTATGGAGATGTGAAAGAAGTTGTCTCACACGTGAT +
Preference number: 1 (lower is better)
Translates to: QQTLVEHLNYHRPQI*WALWRCERSCLTRD
Trigger: ATCACGTGTGAGACAACTTCTTTCACATCTCCATAGTGCCCAGCAAATTTGAGGCCTATGGTAGTTGAGGTGCTCAACTAATGTTTGTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
3UTR CCA 90 bp CAAACATTAGTTGAGCACCTCAACTACCATAGGCCTCAAATTTGCTaGGCACTATGGAGATGTGAAAGAAGTTGTCTCACACGTGATATG +
Preference number: 1 (lower is better)
Translates to: QTLVEHLNYHRPQIC*ALWRCERSCLTRDM
Trigger: CATATCACGTGTGAGACAACTTCTTTCACATCTCCATAGTGCCCAGCAAATTTGAGGCCTATGGTAGTTGAGGTGCTCAACTAATGTTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
3UTR TCA 90 bp ATGCATAGAAACTTCGCAAGTAGTAGGATCTCATCTGTCCCTTCATaGCAGATGAAAACACCTACATTAAATTGGGACATCTTCCAAATC +
Preference number: 1 (lower is better)
Translates to: MHRNFASSRISSVPS*QMKTPTLNWDIFQI
Trigger: GATTTGGAAGATGTCCCAATTTAATGTAGGTGTTTTCATCTGTCATGAAGGGACAGATGAGATCCTACTACTTGCGAAGTTTCTATGCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
3UTR TCA 90 bp AGCATAGTGAGAAATCACCATTTAATGAGATCCAAAGGGAAGGTATaGGCCAGATCTCGTAAGCTGGGTGTAAGAATTTGCATTTTAGAT +
Preference number: 1 (lower is better)
Translates to: SIVRNHHLMRSKGKV*ARSRKLGVRICILD
Trigger: ATCTAAAATGCAAATTCTTACACCCAGCTTACGAGATCTGGCTCATACCTTCCCTTTGGATCTCATTAAATGGTGATTTCTCACTATGCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
3UTR GCA 90 bp AGATGCCTTGGGAACAAAAATATCACAAACATTGAGAAATCCAAATaGCCTCTTCCCACAATAATACTGTGTTCACAATGTCATTTTCTA +
Preference number: 1 (lower is better)
Translates to: RCLGNKNITNIEKSK*PLPTIILCSQCHFL
Trigger: TAGAAAATGACATTGTGAACACAGTATTATTGTGGGAAGAGGGCATTTGGATTTCTCAATGTTTGTGATATTTTTGTTCCCAAGGCATCT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
3UTR-3UTR TCA 90 bp GCATCACGTGGGTGGGTAGCCTGGGAACAGGTAGAGTTGCTGGCACAGAGTACTGCCACATATCATGTCTaGGCGAGTAGGCAGTCTCAT +
Preference number: 2 (lower is better)
Translates to: ASRGWVAWEQVELLAQSTATYHV*ASRQSH
Trigger: ATGAGACTGCCTACTCGCTCAGACATGATATGTGGC...AGTACTCTGTGCCAGCAACTCTACCTGTTCCCAGGCTACCCACCCACGTGATGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
3UTR-3UTR GCA 90 bp TCGGTGGAATTCTGTGCCAGGGGCATAGCCTTCACGCTCCTTGATAAGGGCATTAGCATGTCGGCCACGTaGATGTCACAAGCTCTTTCA +
Preference number: 2 (lower is better)
Translates to: SVEFCARGIAFTLLDKGISMSAT*MSQALS
Trigger: TGAAAGAGCTTGTGACATGCACGTGGCCGACATGCT...AATGCCCTTATCAAGGAGCGTGAAGGCTATGCCCCTGGCACAGAATTCCACCGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
3UTR-3UTR CCA 90 bp TTCACCTTAACAAGCATGTCGGCCACGTGCATGTCACAAGCTCTTTCAGAGAACACCAGGAACCCCGTTTaGTGTTCCGCATGGCAGCAT +
Preference number: 2 (lower is better)
Translates to: FTLTSMSATCMSQALSENTRNPV*CSAWQH
Trigger: ATGCTGCCATGCGGAACACCAAACGGGGTTCCTGGT...GTTCTCTGAAAGAGCTTGTGACATGCACGTGGCCGACATGCTTGTTAAGGTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
3UTR CAA 90 bp ATCATGTCTGAGCGAGTAGGCAGTCTCATCTTCATCAACTCCTCTTaGCCAGCATCACTCTCCTCACATCCAGGGGATTGTGTGTGGTTC +
Preference number: 2 (lower is better)
Translates to: IMSERVGSLIFINSS*PASLSSHPGDCVWF
Trigger: GAACCACACACAATCCCCTGGATGTGAGGAGAGTGATGCTGGCAAAGAGGAGTTGATGAAGATGAGACTGCCTACTCGCTCAGACATGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
3UTR-3UTR TCA 90 bp GCCATTACAGCCTGCAGTAAGCACAACAGAGACCAACATGATGCCCTCATAAGGAACACAGAGAAACAATaGGAAGGGAGACGCTGCCAC +
Preference number: 2 (lower is better)
Translates to: AITACSKHNRDQHDALIRNTEKQ*EGRRCH
Trigger: GTGGCAGCGTCTCCCTTCTCATTGTTTCTCTGTGTT...CCTTATGAGGGCATCATGTTGGTCTCTGTTGTGCTTACTGCAGGCTGTAATGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
3UTR-3UTR GCA 90 bp CACCTTAACAAGCATGTCGGCCACGTGCATGTCACAAGCTCTTTCAGAGAACACTCATCAACTCCTCTTTaGCAGCATCACTCTCCTCAC +
Preference number: 2 (lower is better)
Translates to: HLNKHVGHVHVTSSFREHSSTPL*QHHSPH
Trigger: GTGAGGAGAGTGATGCTGGCAAAGAGGAGTTGATGA...GTGTTCTCTGAAAGAGCTTGTGACATGCACGTGGCCGACATGCTTGTTAAGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
3UTR-3UTR CCA 90 bp GTCAAGTACAGTGTAAGTGCATGCAGAAGCCACAGTAAGGAAGGAGAGACATCCGACAGGAAACAAGCCTaGGAGAATCTCATATCCCTG +
Preference number: 2 (lower is better)
Translates to: VKYSVSACRSHSKEGETSDRKQA*ENLISL
Trigger: CAGGGATATGAGATTCTCCCAGGCTTGTTTCCTGTC...GGATGTCTCTCCTTCCTTACTGTGGCTTCTGCATGCACTTACACTGTACTTGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
3UTR-3UTR GCA 90 bp TTCCCACTCTCTTGGAGCATTCAGCCTCAGAGGGAACAAGTGAAACAAGCAAAATGTTCAAAGGCTGGGTaGACTGAACACAAAGGAACC +
Preference number: 2 (lower is better)
Translates to: FPLSWSIQPQREQVKQAKCSKAG*TEHKGT
Trigger: GGTTCCTTTGTGTTCAGTGCACCCAGCCTTTGAACA...TTTTGCTTGTTTCACTTGTTCCCTCTGAGGCTGAATGCTCCAAGAGAGTGGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
3UTR-3UTR TCA 90 bp AAGAGGGGCTGGAGCATAGTGAGAAATCACCATTTAATGAGATCCAAAGGGAAGAAAGAAGCCTCACGCTaGAGCAGAAGGCAGAAAGAA +
Preference number: 2 (lower is better)
Translates to: KRGWSIVRNHHLMRSKGKKEASR*SRRQKE
Trigger: TTCTTTCTGCCTTCTGCTTCAGCGTGAGGCTTCTTT...CTTCCCTTTGGATCTCATTAAATGGTGATTTCTCACTATGCTCCAGCCCCTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
3UTR-3UTR TCA 90 bp ACTTGGTTCATACAACAAACATTAGTTGAGCACCTCAACTACCATAGGCCTCAAAAAGACAGAGATGGCTaGCAGGAAACAAGCCTGGGA +
Preference number: 2 (lower is better)
Translates to: TWFIQQTLVEHLNYHRPQKDRDG*QETSLG
Trigger: TCCCAGGCTTGTTTCCTGTCAGCCATCTCTGTCTTT...TTGAGGCCTATGGTAGTTGAGGTGCTCAACTAATGTTTGTTGTATGAACCAAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
3UTR-3UTR TCA 90 bp CTAGGTTATATCACATATGGTACTATCCCCACTAAAACACAGAGAAACAATGAGAACCAATGGAAAGGCTaGGGGACTGTCCTTCACCTA +
Preference number: 2 (lower is better)
Translates to: LGYITYGTIPTKTQRNNENQWKG*GTVLHL
Trigger: TAGGTGAAGGACAGTCCCTCAGCCTTTCCATTGGTT...CTCATTGTTTCTCTGTGTTTTAGTGGGGATAGTACCATATGTGATATAACCTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
3UTR-3UTR TCA 90 bp TCCAAATGCCCTCTTCCCACAATAATACTGTGTTCACAATGTCATTTTCTAGGCAGAATCTCATATCCCTaGGAGGGTAGACAGAACAAA +
Preference number: 2 (lower is better)
Translates to: SKCPLPTIILCSQCHFLGRISYP*EGRQNK
Trigger: TTTGTTCTGTCTACCCTCTCAGGGATATGAGATTCT...GCCTAGAAAATGACATTGTGAACACAGTATTATTGTGGGAAGAGGGCATTTGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
3UTR-3UTR TCA 90 bp GCCTTGGGAACAAAAATATCACAAACATTGAGAAATCCAAATGCCCTCTTCCCAGAACAAAAACCATTCTaGAGAGAAGTCTCCATTGTG +
Preference number: 2 (lower is better)
Translates to: ALGTKISQTLRNPNALFPEQKPF*REVSIV
Trigger: CACAATGGAGACTTCTCTTCAGAATGGTTTTTGTTC...TGGGAAGAGGGCATTTGGATTTCTCAATGTTTGTGATATTTTTGTTCCCAAGGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
3UTR-3UTR CCA 90 bp CACAGAAAACCAAAGAAGCCTCACGCTGAAGCAGAAGGCAGAAAGAATAAGCAAACTCCTAAGATGCCTTaGGAACAAAAATATCACAAA +
Preference number: 2 (lower is better)
Translates to: HRKPKKPHAEAEGRKNKQTPKMP*EQKYHK
Trigger: TTTGTGATATTTTTGTTCCCAAGGCATCTTAGGAGT...TTGCTTATTCTTTCTGCCTTCTGCTTCAGCGTGAGGCTTCTTTGGTTTTCTGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
3UTR-3UTR CCA 90 bp AACTACCATAGGCCTCAAATTTGCTGGGCACTATGGAGATGTGAAAGAAGTTGTGTAAGTGCCAGTTACTaGATATCAGTAAGTAAGAAG +
Preference number: 2 (lower is better)
Translates to: NYHRPQICWALWRCERSCVSASY*ISVSKK
Trigger: CTTCTTACTTACTGATATCCAGTAACTGGCACTTAC...ACAACTTCTTTCACATCTCCATAGTGCCCAGCAAATTTGAGGCCTATGGTAGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
3UTR-3UTR GCA 90 bp ACCACTTGGTTCATACAACAAACATTAGTTGAGCACCTCAACTACCATAGGCCTATTGAGAAATCCAAATaGCCTCTTCCCACAATAATA +
Preference number: 2 (lower is better)
Translates to: TTWFIQQTLVEHLNYHRPIEKSK*PLPTII
Trigger: TATTATTGTGGGAAGAGGGCATTTGGATTTCTCAAT...AGGCCTATGGTAGTTGAGGTGCTCAACTAATGTTTGTTGTATGAACCAAGTGGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
3UTR-3UTR CAA 90 bp GCAGGCGGCATCACGTGGGTGGGTAGCCTGGGAACAGGTAGAGTTGCTGGCACATACTCAGACATCTCCTaGCATCGGTGGAATTCTGTG +
Preference number: 3 (lower is better)
Translates to: AGGITWVGSLGTGRVAGTYSDIS*HRWNSV
Trigger: CACAGAATTCCACCGATGCAAGGAGATGTCTGAGTA...TGTGCCAGCAACTCTACCTGTTCCCAGGCTACCCACCCACGTGATGCCGCCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
3UTR TCA 72 bp GCCACGTGCATGTCACAAGCTCTTTCAGAGAACACCTaGGTGAGGGCCTCAATGTACCAGGAACCCCGTTTG +
Preference number: 3 (lower is better)
Translates to: ATCMSQALSENT*VRASMYQEPRL
Trigger: CAAACGGGGTTCCTGGTACATTGAGGCCCTCACTCAGGTGTTCTCTGAAAGAGCTTGTGACATGCACGTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
3UTR TCA 72 bp CGTGCATGTCACAAGCTCTTTCAGAGAACACCTGAGTaGGGGCCTCAATGTACCAGGAACCCCGTTTGGTGT +
Preference number: 3 (lower is better)
Translates to: RACHKLFQRTPE*GPQCTRNPVWC
Trigger: ACACCAAACGGGGTTCCTGGTACATTGAGGCCCTCACTCAGGTGTTCTCTGAAAGAGCTTGTGACATGCACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
3UTR CCA 72 bp GTAAAGAGGGGAACCAGTACAAAGCAAGAGAGACCCTaGAGGCCAGCCGTCAAGTACAGTGTAAGTGCATGC +
Preference number: 3 (lower is better)
Translates to: VKRGTSTKQERP*RPAVKYSVSAC
Trigger: GCATGCACTTACACTGTACTTGACGGCTGGCCTCCAGGGTCTCTCTTGCTTTGTACTGGTTCCCCTCTTTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
3UTR-3UTR CAA 90 bp TTCACCTTAACAAGCATGTCGGCCACGTGCATGTCACAAGCTCTTTCAGAGAACTACCAGGAACCCCGTTaGGTGTTCCGCATGGCAGCA +
Preference number: 3 (lower is better)
Translates to: FTLTSMSATCMSQALSENYQEPR*VFRMAA
Trigger: TGCTGCCATGCGGAACACCAAACGGGGTTCCTGGTA...GTTCTCTGAAAGAGCTTGTGACATGCACGTGGCCGACATGCTTGTTAAGGTGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
3UTR-3UTR CAA 90 bp TCTTTCAGAGAACACCTGAGTGAGGGCCTCAATGTACCAGGAACCCCGTTTGGTCTCACATCCAGGGGATaGTGTGTGGTTCTTTCCATC +
Preference number: 3 (lower is better)
Translates to: SFREHLSEGLNVPGTPFGLTSRG*CVVLSI
Trigger: GATGGAAAGAACCACACACAATCCCCTGGATGTGAG...ACCAAACGGGGTTCCTGGTACATTGAGGCCCTCACTCAGGTGTTCTCTGAAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
3UTR TCA 72 bp GCCAAAGGAGAGTTCAGAACACCTGCAAGACGGAGATaGGGACCTAAGAGGGGCTGGAGCATAGTGAGAAAT +
Preference number: 3 (lower is better)
Translates to: AKGEFRTPARRR*GPKRGWSIVRN
Trigger: ATTTCTCACTATGCTCCAGCCCCTCTTAGGTCCTCATCTCCGTCTTGCAGGTGTTCTGAACTCTCCTTTGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
3UTR CCA 72 bp CCAGCATCACTCTCCTCACATCCAGGGGATTGTGTGTaGTTCTTTCCATCTTGCTGGTCGACACCTCTATCT +
Preference number: 3 (lower is better)
Translates to: PASLSSHPGDCV*FFPSCWSTPLS
Trigger: AGATAGAGGTGTCGACCAGCAAGATGGAAAGAACCACACACAATCCCCTGGATGTGAGGAGAGTGATGCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
3UTR-3UTR CAA 90 bp GCCAGACTCAAAAATCAGAGACTAGCCAAAGGAGAGTTCAGAACACCTGCAAGAGAAGAGAAGTCTCCATaGTGCCCCCAGTGGTCCAGT +
Preference number: 3 (lower is better)
Translates to: ARLKNQRLAKGEFRTPAREEKSP*CPQWSS
Trigger: ACTGGACCACTGGGGGCACAATGGAGACTTCTCTTC...TCTTGCAGGTGTTCTGAACTCTCCTTTGGCTAGTCTCTGATTTTTGAGTCTGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
3UTR-3UTR CAA 90 bp CCGTTTGGTGTTCCGCATGGCAGCATTACCTTTAAGGCAAGCATAGCCACATATGTGGTTCTTTCCATCTaGCTGGTCGACACCTCTATC +
Preference number: 3 (lower is better)
Translates to: PFGVPHGSITFKASIATYVVLSI*LVDTSI
Trigger: GATAGAGGTGTCGACCAGCAAGATGGAAAGAACCAC...ATATGTGGCTATGCTTGCCTTAAAGGTAATGCTGCCATGCGGAACACCAAACGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
3UTR-3UTR CAA 90 bp AAGGGCATTCACCTTAACAAGCATGTCGGCCACGTGCATGTCACAAGCTCTTTCTTCATCAACTCCTCTTaGCCAGCATCACTCTCCTCA +
Preference number: 3 (lower is better)
Translates to: KGIHLNKHVGHVHVTSSFFINSS*PASLSS
Trigger: TGAGGAGAGTGATGCTGGCAAAGAGGAGTTGATGAA...GAAAGAGCTTGTGACATGCACGTGGCCGACATGCTTGTTAAGGTGAATGCCCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
3UTR-3UTR CAA 90 bp GCCATTACAGCCTGCAGTAAGCACAACAGAGACCAACATGATGCCCTCATAAGGAACACCTACATTAAATaGGGACATCTTCCAAATCTC +
Preference number: 3 (lower is better)
Translates to: AITACSKHNRDQHDALIRNTYIK*GHLPNL
Trigger: GAGATTTGGAAGATGTCCCAATTTAATGTAGGTGTT...CCTTATGAGGGCATCATGTTGGTCTCTGTTGTGCTTACTGCAGGCTGTAATGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
3UTR TCA 72 bp GCTGCTGGTCTCCTTCCTTTACTCAGGAAACATTCATaGAGACCTAGTAAGTGCCAGTTACTGGATATCAGT +
Preference number: 3 (lower is better)
Translates to: AAGLLPLLRKHS*RPSKCQLLDIS
Trigger: ACTGATATCCAGTAACTGGCACTTACTAGGTCTTCATGAATGTTTCCTGAGTAAAGGAAGGAGACCAGCAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
3UTR TCA 72 bp ATTACCTTTAAGGCAAGCATAGCCACATATCATGTCTaGGCGAGTAGGCAGTCTCATCTTCATCAACTCCTC +
Preference number: 3 (lower is better)
Translates to: ITFKASIATYHV*ASRQSHLHQLL
Trigger: GAGGAGTTGATGAAGATGAGACTGCCTACTCGCTCAGACATGATATGTGGCTATGCTTGCCTTAAAGGTAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
3UTR GCA 72 bp TTAGTTGAGCACCTCAACTACCATAGGCCTCAAATTTaGTGGGCACTATGGAGATGTGAAAGAAGTTGTCTC +
Preference number: 3 (lower is better)
Translates to: LVEHLNYHRPQI*WALWRCERSCL
Trigger: GAGACAACTTCTTTCACATCTCCATAGTGCCCAGCAAATTTGAGGCCTATGGTAGTTGAGGTGCTCAACTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
3UTR CCA 72 bp CTCAACTACCATAGGCCTCAAATTTGCTGGGCACTATaGAGATGTGAAAGAAGTTGTCTCACACGTGATATG +
Preference number: 3 (lower is better)
Translates to: LNYHRPQICWAL*RCERSCLTRDM
Trigger: CATATCACGTGTGAGACAACTTCTTTCACATCTCCATAGTGCCCAGCAAATTTGAGGCCTATGGTAGTTGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
3UTR TCA 72 bp AGAAATCACCATTTAATGAGATCCAAAGGGAAGGTATaGGCCAGATCTCGTAAGCTGGGTGTAAGAATTTGC +
Preference number: 3 (lower is better)
Translates to: RNHHLMRSKGKV*ARSRKLGVRIC
Trigger: GCAAATTCTTACACCCAGCTTACGAGATCTGGCTCATACCTTCCCTTTGGATCTCATTAAATGGTGATTTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
3UTR CCA 72 bp GGAAACATTCATGAAGACCTAGTAAGTGCCAGTTACTaGATATCAGTAAGTAAGAAGCACAGTTCCCACTCT +
Preference number: 3 (lower is better)
Translates to: GNIHEDLVSASY*ISVSKKHSSHS
Trigger: AGAGTGGGAACTGTGCTTCTTACTTACTGATATCCAGTAACTGGCACTTACTAGGTCTTCATGAATGTTTCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
3UTR CCA 72 bp ACTTATGCATCCTATACTGACCCAAAAGGCAGAATTTaGCAGCAAGTCTTCAAACCACTTGGTTCATACAAC +
Preference number: 3 (lower is better)
Translates to: TYASYTDPKGRI*QQVFKPLGSYN
Trigger: GTTGTATGAACCAAGTGGTTTGAAGACTTGCTGCCAAATTCTGCCTTTTGGGTCAGTATAGGATGCATAAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
3UTR TCA 72 bp AACTTCGCAAGTAGTAGGATCTCATCTGTCCCTTCATaGCAGATGAAAACACCTACATTAAATTGGGACATC +
Preference number: 3 (lower is better)
Translates to: NFASSRISSVPS*QMKTPTLNWDI
Trigger: GATGTCCCAATTTAATGTAGGTGTTTTCATCTGTCATGAAGGGACAGATGAGATCCTACTACTTGCGAAGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR GCA 90 bp AACCATTCTGAAGAGAAGTCTCCATTGTGCCCCCAGTGGTCCAGTGGCCTCCAACTGTGCAGGGAGGACTaGGACCTCCCGCTCGGCGCC +
Preference number: 4 (lower is better)
Translates to: NHSEEKSPLCPQWSSGLQLCRED*DLPLGA
Trigger: GGCGCCGAGCGGGAGGTCGCAGTCCTCCCTGCACAG...TTGGAGGCCACTGGACCACTGGGGGCACAATGGAGACTTCTCTTCAGAATGGTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR CCA 90 bp GCAGGCGGCATCACGTGGGTGGGTAGCCTGGGAACAGGTAGAGTTGCTGGCACACTGCCCCCTTTGGCCTaGATGAGCTCCCTCATTTCC +
Preference number: 4 (lower is better)
Translates to: AGGITWVGSLGTGRVAGTLPPLA*MSSLIS
Trigger: GGAAATGAGGGAGCTCATCCAGGCCAAAGGGGGCAG...TGTGCCAGCAACTCTACCTGTTCCCAGGCTACCCACCCACGTGATGCCGCCTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
CDS-3UTR TCA 90 bp GTCGGCCACGTGCATGTCACAAGCTCTTTCAGAGAACACCTGAGTGAGGGCCTCAGGCGGAGCTGCTTGTaGGGAGGGCAGGACTCACAC +
Preference number: 4 (lower is better)
Translates to: VGHVHVTSSFREHLSEGLRRSCL*GGQDSH
Trigger: GTGTGAGTCCTGCCCTCCTCACAAGCAGCTCCGCCT...GAGGCCCTCACTCAGGTGTTCTCTGAAAGAGCTTGTGACATGCACGTGGCCGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
CDS-3UTR TCA 90 bp GCAGGCGGCATCACGTGGGTGGGTAGCCTGGGAACAGGTAGAGTTGCTGGCACAGGTCTTTCTCTCCAGTaGAGTGCACATTGCTCAGCA +
Preference number: 4 (lower is better)
Translates to: AGGITWVGSLGTGRVAGTGLSLQ*SAHCSA
Trigger: TGCTGAGCAATGTGCACTTCACTGGAGAGAAAGACC...TGTGCCAGCAACTCTACCTGTTCCCAGGCTACCCACCCACGTGATGCCGCCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
CDS-3UTR GCA 90 bp ACAGAGTACTACAGTACTCAGACATCTCCTTGCATCGGTGGAATTCTGTGCCAGCTGTGCAGGGAGGACTaGGACCTCCCGCTCGGCGCC +
Preference number: 4 (lower is better)
Translates to: TEYYSTQTSPCIGGILCQLCRED*DLPLGA
Trigger: GGCGCCGAGCGGGAGGTCGCAGTCCTCCCTGCACAG...CTGGCACAGAATTCCACCGATGCAAGGAGATGTCTGAGTACTGTAGTACTCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
CDS-3UTR TCA 90 bp GTCGGCCACGTGCATGTCACAAGCTCTTTCAGAGAACACCTGAGTGAGGGCCTCACCTTCCACACCATGTaGGAGGAGTGCCACTACGCA +
Preference number: 4 (lower is better)
Translates to: VGHVHVTSSFREHLSEGLTFHTM*EECHYA
Trigger: TGCGTAGTGGCACTCCTCTCACATGGTGTGGAAGGT...GAGGCCCTCACTCAGGTGTTCTCTGAAAGAGCTTGTGACATGCACGTGGCCGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
CDS-3UTR TCA 90 bp ACCATTCTGAAGAGAAGTCTCCATTGTGCCCCCAGTGGTCCAGTGGCCTCCAACCCCCTTTGGCCTGGATaGGCTCCCTCATTTCCAAAG +
Preference number: 4 (lower is better)
Translates to: TILKRSLHCAPSGPVASNPLWPG*APSFPK
Trigger: CTTTGGAAATGAGGGAGCTCATCCAGGCCAAAGGGG...GTTGGAGGCCACTGGACCACTGGGGGCACAATGGAGACTTCTCTTCAGAATGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR TCA 90 bp GGTGAAGGTAAAGAGGGGAACCAGTACAAAGCAAGAGAGACCCTGGAGGCCAGCGTTCCACATTCTGGCTaGAACTGCCCCCTTTGGCCT +
Preference number: 4 (lower is better)
Translates to: GEGKEGNQYKARETLEASVPHSG*NCPLWP
Trigger: AGGCCAAAGGGGGCAGTTTCAGCCAGAATGTGGAAC...GCTGGCCTCCAGGGTCTCTCTTGCTTTGTACTGGTTCCCCTCTTTACCTTCACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR TCA 90 bp GGCCACGTGCATGTCACAAGCTCTTTCAGAGAACACCTGAGTGAGGGCCTCAATAGTAAGTCTTCCAAGTaGCCCTGCCTGGTCTCCCGC +
Preference number: 4 (lower is better)
Translates to: GHVHVTSSFREHLSEGLNSKSSK*PCLVSR
Trigger: GCGGGAGACCAGGCAGGGTCACTTGGAAGACTTACT...ATTGAGGCCCTCACTCAGGTGTTCTCTGAAAGAGCTTGTGACATGCACGTGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
CDS-3UTR TCA 90 bp GCCATTACAGCCTGCAGTAAGCACAACAGAGACCAACATGATGCCCTCATAAGGAGGCGGAGCTGCTTGTaGGGAGGGCAGGACTCACAC +
Preference number: 4 (lower is better)
Translates to: AITACSKHNRDQHDALIRRRSCL*GGQDSH
Trigger: GTGTGAGTCCTGCCCTCCTCACAAGCAGCTCCGCCT...CCTTATGAGGGCATCATGTTGGTCTCTGTTGTGCTTACTGCAGGCTGTAATGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR GCA 90 bp CCAGCATCACTCTCCTCACATCCAGGGGATTGTGTGTGGTTCTTTCCATCTTGCTCGCTCAGCAGCAGCTaGTTGGCCAGCACCACTCGA +
Preference number: 4 (lower is better)
Translates to: PASLSSHPGDCVWFFPSCSLSSS*LASTTR
Trigger: TCGAGTGGTGCTGGCCAAGCAGCTGCTGCTGAGCGA...GCAAGATGGAAAGAACCACACACAATCCCCTGGATGTGAGGAGAGTGATGCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
CDS-3UTR CCA 90 bp ACCATTCTGAAGAGAAGTCTCCATTGTGCCCCCAGTGGTCCAGTGGCCTCCAACTCAGCAGCAGCTGCTTaGCCAGCACCACTCGATTCT +
Preference number: 4 (lower is better)
Translates to: TILKRSLHCAPSGPVASNSAAAA*PAPLDS
Trigger: AGAATCGAGTGGTGCTGGCCAAGCAGCTGCTGCTGA...GTTGGAGGCCACTGGACCACTGGGGGCACAATGGAGACTTCTCTTCAGAATGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR TCA 90 bp ACCATTCTGAAGAGAAGTCTCCATTGTGCCCCCAGTGGTCCAGTGGCCTCCAACGGTCTTTCTCTCCAGTaGAGTGCACATTGCTCAGCA +
Preference number: 4 (lower is better)
Translates to: TILKRSLHCAPSGPVASNGLSLQ*SAHCSA
Trigger: TGCTGAGCAATGTGCACTTCACTGGAGAGAAAGACC...GTTGGAGGCCACTGGACCACTGGGGGCACAATGGAGACTTCTCTTCAGAATGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR TCA 90 bp AAGGGCATTCACCTTAACAAGCATGTCGGCCACGTGCATGTCACAAGCTCTTTCCTACGCAGGAGTCTGTaGCCCGGTGTGCAGGTAACT +
Preference number: 4 (lower is better)
Translates to: KGIHLNKHVGHVHVTSSFLRRSL*PGVQVT
Trigger: AGTTACCTGCACACCGGGTCACAGACTCCTGCGTAG...GAAAGAGCTTGTGACATGCACGTGGCCGACATGCTTGTTAAGGTGAATGCCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
CDS-3UTR GCA 90 bp GTCAAGTACAGTGTAAGTGCATGCAGAAGCCACAGTAAGGAAGGAGAGACATCCTCGCTCAGCAGCAGCTaGTTGGCCAGCACCACTCGA +
Preference number: 4 (lower is better)
Translates to: VKYSVSACRSHSKEGETSSLSSS*LASTTR
Trigger: TCGAGTGGTGCTGGCCAAGCAGCTGCTGCTGAGCGA...GGATGTCTCTCCTTCCTTACTGTGGCTTCTGCATGCACTTACACTGTACTTGAC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR CCA 90 bp ACTCTCCTCACATCCAGGGGATTGTGTGTGGTTCTTTCCATCTTGCTGGTCGACCTGGGGTCCTCTCTTTaGCAGCAGGTTGAGGAGTTC +
Preference number: 4 (lower is better)
Translates to: TLLTSRGLCVVLSILLVDLGSSL*QQVEEF
Trigger: GAACTCCTCAACCTGCTGCCAAAGAGAGGACCCCAG...GTCGACCAGCAAGATGGAAAGAACCACACACAATCCCCTGGATGTGAGGAGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
3UTR CAA 72 bp CTCTTTGCCAGCATCACTCTCCTCACATCCAGGGGATaGTGTGTGGTTCTTTCCATCTTGCTGGTCGACACC +
Preference number: 4 (lower is better)
Translates to: LFASITLLTSRG*CVVLSILLVDT
Trigger: GGTGTCGACCAGCAAGATGGAAAGAACCACACACAATCCCCTGGATGTGAGGAGAGTGATGCTGGCAAAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
CDS-3UTR TCA 90 bp ATAGCCTTCACGCTCCTTGATAAGGGCATTCACCTTAACAAGCATGTCGGCCACCCCCTTTGGCCTGGATaGGCTCCCTCATTTCCAAAG +
Preference number: 4 (lower is better)
Translates to: IAFTLLDKGIHLNKHVGHPLWPG*APSFPK
Trigger: CTTTGGAAATGAGGGAGCTCATCCAGGCCAAAGGGG...GTGGCCGACATGCTTGTTAAGGTGAATGCCCTTATCAAGGAGCGTGAAGGCTAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
CDS-3UTR TCA 90 bp CAGCATCACTCTCCTCACATCCAGGGGATTGTGTGTGGTTCTTTCCATCTTGCTGTTCCACATTCTGGCTaGAACTGCCCCCTTTGGCCT +
Preference number: 4 (lower is better)
Translates to: QHHSPHIQGIVCGSFHLAVPHSG*NCPLWP
Trigger: AGGCCAAAGGGGGCAGTTTCAGCCAGAATGTGGAAC...AGCAAGATGGAAAGAACCACACACAATCCCCTGGATGTGAGGAGAGTGATGCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
CDS-3UTR TCA 90 bp GCCTGGGAACAGGTAGAGTTGCTGGCACAGAGTACTACAGTACTCAGACATCTCGGTGGGAGTACGTGCTaGATATCTGAGAGGGTTGTG +
Preference number: 4 (lower is better)
Translates to: AWEQVELLAQSTTVLRHLGGSTC*ISERVV
Trigger: CACAACCCTCTCAGATATTCAGCACGTACTCCCACC...GAGATGTCTGAGTACTGTAGTACTCTGTGCCAGCAACTCTACCTGTTCCCAGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
CDS-3UTR TCA 90 bp GTCGGCCACGTGCATGTCACAAGCTCTTTCAGAGAACACCTGAGTGAGGGCCTCAAAACCTCTTGGAGCTaGAGCAGTTTGCCATCTACA +
Preference number: 4 (lower is better)
Translates to: VGHVHVTSSFREHLSEGLKTSWS*SSLPST
Trigger: TGTAGATGGCAAACTGCTTCAGCTCCAAGAGGTTTT...GAGGCCCTCACTCAGGTGTTCTCTGAAAGAGCTTGTGACATGCACGTGGCCGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
CDS-3UTR CCA 90 bp GTCAAGTACAGTGTAAGTGCATGCAGAAGCCACAGTAAGGAAGGAGAGACATCCCTGCCCCCTTTGGCCTaGATGAGCTCCCTCATTTCC +
Preference number: 4 (lower is better)
Translates to: VKYSVSACRSHSKEGETSLPPLA*MSSLIS
Trigger: GGAAATGAGGGAGCTCATCCAGGCCAAAGGGGGCAG...GGATGTCTCTCCTTCCTTACTGTGGCTTCTGCATGCACTTACACTGTACTTGAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR CCA 90 bp GCCATTACAGCCTGCAGTAAGCACAACAGAGACCAACATGATGCCCTCATAAGGCTGGGGTCCTCTCTTTaGCAGCAGGTTGAGGAGTTC +
Preference number: 4 (lower is better)
Translates to: AITACSKHNRDQHDALIRLGSSL*QQVEEF
Trigger: GAACTCCTCAACCTGCTGCCAAAGAGAGGACCCCAG...CCTTATGAGGGCATCATGTTGGTCTCTGTTGTGCTTACTGCAGGCTGTAATGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR TCA 90 bp GCCAGACTCAAAAATCAGAGACTAGCCAAAGGAGAGTTCAGAACACCTGCAAGACTACGCAGGAGTCTGTaGCCCGGTGTGCAGGTAACT +
Preference number: 4 (lower is better)
Translates to: ARLKNQRLAKGEFRTPARLRRSL*PGVQVT
Trigger: AGTTACCTGCACACCGGGTCACAGACTCCTGCGTAG...TCTTGCAGGTGTTCTGAACTCTCCTTTGGCTAGTCTCTGATTTTTGAGTCTGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR CCA 90 bp GCACAGAGTACTACAGTACTCAGACATCTCCTTGCATCGGTGGAATTCTGTGCCGTGACTAGAGTAGTGTaGTCCACATCCCCTCCAGAG +
Preference number: 4 (lower is better)
Translates to: AQSTTVLRHLLASVEFCAVTRVV*STSPPE
Trigger: CTCTGGAGGGGATGTGGACCACACTACTCTAGTCAC...GGCACAGAATTCCACCGATGCAAGGAGATGTCTGAGTACTGTAGTACTCTGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
CDS-3UTR CCA 90 bp GCCAGACTCAAAAATCAGAGACTAGCCAAAGGAGAGTTCAGAACACCTGCAAGACGTGGGTGGGTAGCCTaGGAACAGGTAGAGTTGCTG +
Preference number: 4 (lower is better)
Translates to: ARLKNQRLAKGEFRTPARRGWVA*EQVELL
Trigger: CAGCAACTCTACCTGTTCCCAGGCTACCCACCCACG...TCTTGCAGGTGTTCTGAACTCTCCTTTGGCTAGTCTCTGATTTTTGAGTCTGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
3UTR CAA 72 bp AGACAGAACAAAAACCATTCTGAAGAGAAGTCTCCATaGTGCCCCCAGTGGTCCAGTGGCCTCCAACAGCAG +
Preference number: 4 (lower is better)
Translates to: RQNKNHSEEKSP*CPQWSSGLQQQ
Trigger: CTGCTGTTGGAGGCCACTGGACCACTGGGGGCACAATGGAGACTTCTCTTCAGAATGGTTTTTGTTCTGTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
3UTR CAA 72 bp GAGCGAGTAGGCAGTCTCATCTTCATCAACTCCTCTTaGCCAGCATCACTCTCCTCACATCCAGGGGATTGT +
Preference number: 4 (lower is better)
Translates to: ERVGSLIFINSS*PASLSSHPGDC
Trigger: ACAATCCCCTGGATGTGAGGAGAGTGATGCTGGCAAAGAGGAGTTGATGAAGATGAGACTGCCTACTCGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
CDS-3UTR GCA 90 bp GCCTCCGCCAGACTCAAAAATCAGAGACTAGCCAAAGGAGAGTTCAGAACACCTAGCATGTCGGCCACGTaGATGTCACAAGCTCTTTCA +
Preference number: 4 (lower is better)
Translates to: ASARLKNQRLAKGEFRTPSMSAT*MSQALS
Trigger: TGAAAGAGCTTGTGACATGCACGTGGCCGACATGCT...AGGTGTTCTGAACTCTCCTTTGGCTAGTCTCTGATTTTTGAGTCTGGCGGAGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR CCA 90 bp GGTAGAGTTGCTGGCACAGAGTACTACAGTACTCAGACATCTCCTTGCATCGGTAGGAGTTCCACATTCTaGCTGAAACTGCCCCCTTTG +
Preference number: 4 (lower is better)
Translates to: GRVAGTEYYSTQTSPCIGRSSTF*LKLPPL
Trigger: CAAAGGGGGCAGTTTCAGCCAGAATGTGGAACTCCT...ACCGATGCAAGGAGATGTCTGAGTACTGTAGTACTCTGTGCCAGCAACTCTACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
CDS-3UTR TCA 90 bp AGCATTCAGCCTCAGAGGGAACAAGTGAAACAAGCAAAAGTGCCATTACAGCCTGGTGGGAGTACGTGCTaGATATCTGAGAGGGTTGTG +
Preference number: 4 (lower is better)
Translates to: SIQPQREQVKQAKVPLQPGGSTC*ISERVV
Trigger: CACAACCCTCTCAGATATTCAGCACGTACTCCCACC...AGGCTGTAATGGCACTTTTGCTTGTTTCACTTGTTCCCTCTGAGGCTGAATGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR GCA 90 bp GCACAGAGTACTACAGTACTCAGACATCTCCTTGCATCGGTGGAATTCTGTGCCCATCTACACCATAGATaGCACCTTCCACACCATGTG +
Preference number: 4 (lower is better)
Translates to: AQSTTVLRHLLASVEFCAHLHHR*HLPHHV
Trigger: CACATGGTGTGGAAGGTGGCATCTATGGTGTAGATG...GGCACAGAATTCCACCGATGCAAGGAGATGTCTGAGTACTGTAGTACTCTGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
CDS-3UTR GCA 90 bp GCCTCCGCCAGACTCAAAAATCAGAGACTAGCCAAAGGAGAGTTCAGAACACCTTCATCAACTCCTCTTTaGCAGCATCACTCTCCTCAC +
Preference number: 4 (lower is better)
Translates to: ASARLKNQRLAKGEFRTPSSTPL*QHHSPH
Trigger: GTGAGGAGAGTGATGCTGGCAAAGAGGAGTTGATGA...AGGTGTTCTGAACTCTCCTTTGGCTAGTCTCTGATTTTTGAGTCTGGCGGAGGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR CCA 90 bp GATAAGGGCATTCACCTTAACAAGCATGTCGGCCACGTGCATGTCACAAGCTCTTTCAGTGTTTCCTGGTaGTCAGGATGCATTCCACAC +
Preference number: 4 (lower is better)
Translates to: DKGIHLNKHVGHVHVTSSFSVSW*SGCIPH
Trigger: GTGTGGAATGCATCCTGACCACCAGGAAACACTGAA...AGAGCTTGTGACATGCACGTGGCCGACATGCTTGTTAAGGTGAATGCCCTTATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
CDS-3UTR CCA 90 bp GTCAAGTACAGTGTAAGTGCATGCAGAAGCCACAGTAAGGAAGGAGAGACATCCAGGAGTTCCACATTCTaGCTGAAACTGCCCCCTTTG +
Preference number: 4 (lower is better)
Translates to: VKYSVSACRSHSKEGETSRSSTF*LKLPPL
Trigger: CAAAGGGGGCAGTTTCAGCCAGAATGTGGAACTCCT...GGATGTCTCTCCTTCCTTACTGTGGCTTCTGCATGCACTTACACTGTACTTGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR CCA 90 bp GCCAGACTCAAAAATCAGAGACTAGCCAAAGGAGAGTTCAGAACACCTGCAAGAATCTCCTTGCATCGGTaGAATTCTGTGCCAGGGGCA +
Preference number: 4 (lower is better)
Translates to: ARLKNQRLAKGEFRTPARISLHR*NSVPGA
Trigger: TGCCCCTGGCACAGAATTCCACCGATGCAAGGAGAT...TCTTGCAGGTGTTCTGAACTCTCCTTTGGCTAGTCTCTGATTTTTGAGTCTGGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR TCA 90 bp TCCAAATGCCCTCTTCCCACAATAATACTGTGTTCACAATGTCATTTTCTAGGCAGTAAGTCTTCCAAGTaGCCCTGCCTGGTCTCCCGC +
Preference number: 4 (lower is better)
Translates to: SKCPLPTIILCSQCHFLGSKSSK*PCLVSR
Trigger: GCGGGAGACCAGGCAGGGTCACTTGGAAGACTTACT...GCCTAGAAAATGACATTGTGAACACAGTATTATTGTGGGAAGAGGGCATTTGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR TCA 90 bp AAGGGCATTCACCTTAACAAGCATGTCGGCCACGTGCATGTCACAAGCTCTTTCTATCTGAGAGGGTTGTaGGCAGTAAGTCTTCCAAGT +
Preference number: 4 (lower is better)
Translates to: KGIHLNKHVGHVHVTSSFYLRGL*AVSLPS
Trigger: ACTTGGAAGACTTACTGCTCACAACCCTCTCAGATA...GAAAGAGCTTGTGACATGCACGTGGCCGACATGCTTGTTAAGGTGAATGCCCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
CDS-3UTR TCA 90 bp AACTACCATAGGCCTCAAATTTGCTGGGCACTATGGAGATGTGAAAGAAGTTGTACCTTCCACACCATGTaGGAGGAGTGCCACTACGCA +
Preference number: 4 (lower is better)
Translates to: NYHRPQICWALWRCERSCTFHTM*EECHYA
Trigger: TGCGTAGTGGCACTCCTCTCACATGGTGTGGAAGGT...ACAACTTCTTTCACATCTCCATAGTGCCCAGCAAATTTGAGGCCTATGGTAGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR CCA 90 bp CCAGGAACCCCGTTTGGTGTTCCGCATGGCAGCATTACCTTTAAGGCAAGCATATTTTTCAGTGTTTCCTaGTGGTCAGGATGCATTCCA +
Preference number: 4 (lower is better)
Translates to: PGTPFGVPHGSITFKASIFFSVS*WSGCIP
Trigger: TGGAATGCATCCTGACCACCAGGAAACACTGAAAAA...TATGCTTGCCTTAAAGGTAATGCTGCCATGCGGAACACCAAACGGGGTTCCTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
CDS-3UTR TCA 90 bp TACAGCGTAAGTGGCAAGAAACATCCTACAAAGGACGGCTTCACAGACTTGGCATATCTGAGAGGGTTGTaGGCAGTAAGTCTTCCAAGT +
Preference number: 4 (lower is better)
Translates to: YSVSGKKHPTKDGFTDLAYLRGL*AVSLPS
Trigger: ACTTGGAAGACTTACTGCTCACAACCCTCTCAGATA...TGCCAAGTCTGTGAAGCCGTCCTTTGTAGGATGTTTCTTGCCACTTACGCTGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR GCA 90 bp AACTACCATAGGCCTCAAATTTGCTGGGCACTATGGAGATGTGAAAGAAGTTGTATCGGTGGAATTCTGTaGCAGGGGCATAGCCTTCAC +
Preference number: 4 (lower is better)
Translates to: NYHRPQICWALWRCERSCIGGIL*QGHSLH
Trigger: GTGAAGGCTATGCCCCTGGCACAGAATTCCACCGAT...ACAACTTCTTTCACATCTCCATAGTGCCCAGCAAATTTGAGGCCTATGGTAGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR GCA 90 bp AGCATTCAGCCTCAGAGGGAACAAGTGAAACAAGCAAAAGTGCCATTACAGCCTACTCAGACATCTCCTTaGATCGGTGGAATTCTGTGC +
Preference number: 4 (lower is better)
Translates to: SIQPQREQVKQAKVPLQPTQTSP*IGGILC
Trigger: GCACAGAATTCCACCGATGCAAGGAGATGTCTGAGT...AGGCTGTAATGGCACTTTTGCTTGTTTCACTTGTTCCCTCTGAGGCTGAATGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR CCA 90 bp TTCCCACTCTCTTGGAGCATTCAGCCTCAGAGGGAACAAGTGAAACAAGCAAAATTCAGTGTTTCCTGGTaGTCAGGATGCATTCCACAC +
Preference number: 4 (lower is better)
Translates to: FPLSWSIQPQREQVKQAKFSVSW*SGCIPH
Trigger: GTGTGGAATGCATCCTGACCACCAGGAAACACTGAA...TTTTGCTTGTTTCACTTGTTCCCTCTGAGGCTGAATGCTCCAAGAGAGTGGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR CCA 90 bp ACCACTTGGTTCATACAACAAACATTAGTTGAGCACCTCAACTACCATAGGCCTGTGACTAGAGTAGTGTaGTCCACATCCCCTCCAGAG +
Preference number: 4 (lower is better)
Translates to: TTWFIQQTLVEHLNYHRPVTRVV*STSPPE
Trigger: CTCTGGAGGGGATGTGGACCACACTACTCTAGTCAC...AGGCCTATGGTAGTTGAGGTGCTCAACTAATGTTTGTTGTATGAACCAAGTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR CCA 90 bp TCCAAATGCCCTCTTCCCACAATAATACTGTGTTCACAATGTCATTTTCTAGGCACCAGGAACCCCGTTTaGTGTTCCGCATGGCAGCAT +
Preference number: 4 (lower is better)
Translates to: SKCPLPTIILCSQCHFLGTRNPV*CSAWQH
Trigger: ATGCTGCCATGCGGAACACCAAACGGGGTTCCTGGT...GCCTAGAAAATGACATTGTGAACACAGTATTATTGTGGGAAGAGGGCATTTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR TCA 90 bp CATTCAGTGACAGTTCAAACAAAGCATGACCAGGGAAATTTCTATGACTTCCAGTCTTTGGCAGCAGGTTaGGGAGTTCCACATTCTGGC +
Preference number: 4 (lower is better)
Translates to: HSVTVQTKHDQGNFYDFQSLAAG*GVPHSG
Trigger: GCCAGAATGTGGAACTCCTCAACCTGCTGCCAAAGA...CTGGAAGTCATAGAAATTTCCCTGGTCATGCTTTGTTTGAACTGTCACTGAATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR TCA 90 bp AACTACCATAGGCCTCAAATTTGCTGGGCACTATGGAGATGTGAAAGAAGTTGTGCCACATATCATGTCTaGGCGAGTAGGCAGTCTCAT +
Preference number: 4 (lower is better)
Translates to: NYHRPQICWALWRCERSCATYHV*ASRQSH
Trigger: ATGAGACTGCCTACTCGCTCAGACATGATATGTGGC...ACAACTTCTTTCACATCTCCATAGTGCCCAGCAAATTTGAGGCCTATGGTAGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR GCA 90 bp AGTTGCTGGCACAGAGTACTACAGTACTCAGACATCTCCTTGCATCGGTGGAATAGCACCTCCACGACATaGTTGGATGAAGAACATTTT +
Preference number: 4 (lower is better)
Translates to: SCWHRVLQYSDISLHRWNSTSTT*LDEEHF
Trigger: AAAATGTTCTTCATCCAAGCATGTCGTGGAGGTGCT...ATTCCACCGATGCAAGGAGATGTCTGAGTACTGTAGTACTCTGTGCCAGCAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
CDS-3UTR TCA 90 bp AAGAGGGGCTGGAGCATAGTGAGAAATCACCATTTAATGAGATCCAAAGGGAAGAAAACCTCTTGGAGCTaGAGCAGTTTGCCATCTACA +
Preference number: 4 (lower is better)
Translates to: KRGWSIVRNHHLMRSKGKKTSWS*SSLPST
Trigger: TGTAGATGGCAAACTGCTTCAGCTCCAAGAGGTTTT...CTTCCCTTTGGATCTCATTAAATGGTGATTTCTCACTATGCTCCAGCCCCTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR GCA 90 bp ACCACTTGGTTCATACAACAAACATTAGTTGAGCACCTCAACTACCATAGGCCTCATCTACACCATAGATaGCACCTTCCACACCATGTG +
Preference number: 4 (lower is better)
Translates to: TTWFIQQTLVEHLNYHRPHLHHR*HLPHHV
Trigger: CACATGGTGTGGAAGGTGGCATCTATGGTGTAGATG...AGGCCTATGGTAGTTGAGGTGCTCAACTAATGTTTGTTGTATGAACCAAGTGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR GCA 90 bp TACAGCGTAAGTGGCAAGAAACATCCTACAAAGGACGGCTTCACAGACTTGGCACTCATCTCCACGACATaGTTGGATGAAGAACATTTT +
Preference number: 4 (lower is better)
Translates to: YSVSGKKHPTKDGFTDLALISTT*LDEEHF
Trigger: AAAATGTTCTTCATCCAAGCATGTCGTGGAGATGAG...TGCCAAGTCTGTGAAGCCGTCCTTTGTAGGATGTTTCTTGCCACTTACGCTGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR CCA 90 bp CATTCAGTGACAGTTCAAACAAAGCATGACCAGGGAAATTTCTATGACTTCCAGCCAGGGGATTGTGTGTaGTTCTTTCCATCTTGCTGG +
Preference number: 4 (lower is better)
Translates to: HSVTVQTKHDQGNFYDFQPGDCV*FFPSCW
Trigger: CCAGCAAGATGGAAAGAACCACACACAATCCCCTGG...CTGGAAGTCATAGAAATTTCCCTGGTCATGCTTTGTTTGAACTGTCACTGAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR GCA 90 bp ACTTGGTTCATACAACAAACATTAGTTGAGCACCTCAACTACCATAGGCCTCAAGGTAAAACTCAGGAGTaGATGGCTTCACCAGAAGAC +
Preference number: 4 (lower is better)
Translates to: TWFIQQTLVEHLNYHRPQGKTQE*MASPED
Trigger: GTCTTCTGGTGAAGCCATGCACTCCTGAGTTTTACC...TTGAGGCCTATGGTAGTTGAGGTGCTCAACTAATGTTTGTTGTATGAACCAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR GCA 90 bp AACTACCATAGGCCTCAAATTTGCTGGGCACTATGGAGATGTGAAAGAAGTTGTTGGTTCTTTCCATCTTaGTGGTCGACACCTCTATCT +
Preference number: 4 (lower is better)
Translates to: NYHRPQICWALWRCERSCWFFPS*WSTPLS
Trigger: AGATAGAGGTGTCGACCAGCAAGATGGAAAGAACCA...ACAACTTCTTTCACATCTCCATAGTGCCCAGCAAATTTGAGGCCTATGGTAGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR CCA 90 bp AAGAGGGGCTGGAGCATAGTGAGAAATCACCATTTAATGAGATCCAAAGGGAAGTTTTTCAGTGTTTCCTaGTGGTCAGGATGCATTCCA +
Preference number: 4 (lower is better)
Translates to: KRGWSIVRNHHLMRSKGKFFSVS*WSGCIP
Trigger: TGGAATGCATCCTGACCACCAGGAAACACTGAAAAA...CTTCCCTTTGGATCTCATTAAATGGTGATTTCTCACTATGCTCCAGCCCCTCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS TCA 90 bp GGTCCACATCCCCTCCAGAGCGGAATTCCAGGTCTTTCTCTCCAGTaGAGTGCACATTGCTCAGCACCAGTGCCAAGCCACGGGGCTGAG +
Preference number: 5 (lower is better)
Translates to: GPHPLQSGIPGLSLQ*SAHCSAPVPSHGAE
Trigger: CTCAGCCCCGTGGCTTGGCACTGGTGCTGAGCAATGTGCACTTCACTGGAGAGAAAGACCTGGAATTCCGCTCTGGAGGGGATGTGGACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031895.13
ENSMUST00000156829.8
CDS GCA 90 bp GTGTTTCCTGGTGGTCAGGATGCATTCCACACACTGCCAAAATCCTaGTCCTCCTGTCAGCCGCCATCAGCCCCTTCCTGTGCAGGGAGG +
Preference number: 5 (lower is better)
Translates to: VFPGGQDAFHTLPKS*SSCQPPSAPSCAGR
Trigger: CCTCCCTGCACAGGAAGGGGCTGATGGCGGCTGACAGGAGGAGCAGGATTTTGGCAGTGTGTGGAATGCATCCTGACCACCAGGAAACAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031895.13
ENSMUST00000156829.8
CDS CCA 90 bp CCCTGCCTGGTCTCCCGCAGGGCTTCACAGAAGGCATCAAAAGCCTaGGGTCCTCTCTTTGGCAGCAGGTTGAGGAGTTCCACATTCTGG +
Preference number: 5 (lower is better)
Translates to: PCLVSRRASQKASKA*GPLFGSRLRSSTFW
Trigger: CCAGAATGTGGAACTCCTCAACCTGCTGCCAAAGAGAGGACCCCAGGCTTTTGATGCCTTCTGTGAAGCCCTGCGGGAGACCAGGCAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031895.13
ENSMUST00000156829.8
CDS CCA 90 bp GCCTGGGGTCCTCTCTTTGGCAGCAGGTTGAGGAGTTCCACATTCTaGCTGAAACTGCCCCCTTTGGCCTGGATGAGCTCCCTCATTTCC +
Preference number: 5 (lower is better)
Translates to: AWGPLFGSRLRSSTF*LKLPPLAWMSSLIS
Trigger: GGAAATGAGGGAGCTCATCCAGGCCAAAGGGGGCAGTTTCAGCCAGAATGTGGAACTCCTCAACCTGCTGCCAAAGAGAGGACCCCAGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000031895.13
ENSMUST00000156829.8
CDS TCA 90 bp CACAGCTCAACGGTGGGAGTACGTGCTGAATATCTGAGAGGGTTGTaGGCAGTAAGTCTTCCAAGTGACCCTGCCTGGTCTCCCGCAGGG +
Preference number: 5 (lower is better)
Translates to: HSSTVGVRAEYLRGL*AVSLPSDPAWSPAG
Trigger: CCCTGCGGGAGACCAGGCAGGGTCACTTGGAAGACTTACTGCTCACAACCCTCTCAGATATTCAGCACGTACTCCCACCGTTGAGCTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031895.13
ENSMUST00000156829.8
CDS-3UTR CAA 90 bp AACCATTCTGAAGAGAAGTCTCCATTGTGCCCCCAGTGGTCCAGTGGCCTCCAACTCAGCAGCAGCTGCTaGGCCAGCACCACTCGATTC +
Preference number: 5 (lower is better)
Translates to: NHSEEKSPLCPQWSSGLQLSSSC*ASTTRF
Trigger: GAATCGAGTGGTGCTGGCCAAGCAGCTGCTGCTGAG...TTGGAGGCCACTGGACCACTGGGGGCACAATGGAGACTTCTCTTCAGAATGGTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR CAA 90 bp TCGGTGGAATTCTGTGCCAGGGGCATAGCCTTCACGCTCCTTGATAAGGGCATTCTCAGCAGCAGCTGCTaGGCCAGCACCACTCGATTC +
Preference number: 5 (lower is better)
Translates to: SVEFCARGIAFTLLDKGILSSSC*ASTTRF
Trigger: GAATCGAGTGGTGCTGGCCAAGCAGCTGCTGCTGAG...AATGCCCTTATCAAGGAGCGTGAAGGCTATGCCCCTGGCACAGAATTCCACCGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
CDS TCA 90 bp AAGCAGTTTGCCATCTACACCATAGATGCCACCTTCCACACCATGTaGGAGGAGTGCCACTACGCAGGAGTCTGTGACCCGGTGTGCAGG +
Preference number: 5 (lower is better)
Translates to: KQFAIYTIDATFHTM*EECHYAGVCDPVCR
Trigger: CCTGCACACCGGGTCACAGACTCCTGCGTAGTGGCACTCCTCTCACATGGTGTGGAAGGTGGCATCTATGGTGTAGATGGCAAACTGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031895.13
ENSMUST00000156829.8
CDS TCA 90 bp TCTAAGGAGTGTTCCGTAGCATCTGTGGATAGGCGGAGCTGCTTGTaGGGAGGGCAGGACTCACACACCGAGAAAGGGAGACTTGTGTCA +
Preference number: 5 (lower is better)
Translates to: SKECSVASVDRRSCL*GGQDSHTEKGRLVS
Trigger: TGACACAAGTCTCCCTTTCTCGGTGTGTGAGTCCTGCCCTCCTCACAAGCAGCTCCGCCTATCCACAGATGCTACGGAACACTCCTTAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031895.13
ENSMUST00000156829.8
CDS GCA 90 bp TTCCAGGTCTTTCTCTCCAGTGAAGTGCACATTGCTCAGCACCAGTaGCAAGCCACGGGGCTGAGATTGCAACCTATAGGCCAGCTGGTA +
Preference number: 5 (lower is better)
Translates to: FQVFLSSEVHIAQHQ*QATGLRLQPIGQLV
Trigger: TACCAGCTGGCCTATAGGTTGCAATCTCAGCCCCGTGGCTTGGCACTGGTGCTGAGCAATGTGCACTTCACTGGAGAGAAAGACCTGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031895.13
ENSMUST00000156829.8
CDS-3UTR CAA 90 bp ACTCTCCTCACATCCAGGGGATTGTGTGTGGTTCTTTCCATCTTGCTGGTCGACCCAGTGAAGTGCACATaGCTCAGCACCAGTGCCAAG +
Preference number: 5 (lower is better)
Translates to: TLLTSRGLCVVLSILLVDPVKCT*LSTSAK
Trigger: CTTGGCACTGGTGCTGAGCAATGTGCACTTCACTGG...GTCGACCAGCAAGATGGAAAGAACCACACACAATCCCCTGGATGTGAGGAGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
CDS-3UTR CAA 90 bp GGTGAAGGTAAAGAGGGGAACCAGTACAAAGCAAGAGAGACCCTGGAGGCCAGCCTCACATCCAGGGGATaGTGTGTGGTTCTTTCCATC +
Preference number: 5 (lower is better)
Translates to: GEGKEGNQYKARETLEASLTSRG*CVVLSI
Trigger: GATGGAAAGAACCACACACAATCCCCTGGATGTGAG...GCTGGCCTCCAGGGTCTCTCTTGCTTTGTACTGGTTCCCCTCTTTACCTTCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS GCA 90 bp ATGTCCTTCTCTAGGAGGTGTTCTAACAGCTCGCTCAGCAGCAGCTaGTTGGCCAGCACCACTCGATTCTTTTTCAGTGTTTCCTGGTGG +
Preference number: 5 (lower is better)
Translates to: MSFSRRCSNSSLSSS*LASTTRFFFSVSWW
Trigger: CCACCAGGAAACACTGAAAAAGAATCGAGTGGTGCTGGCCAAGCAGCTGCTGCTGAGCGAGCTGTTAGAACACCTCCTAGAGAAGGACAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031895.13
ENSMUST00000156829.8
CDS CCA 90 bp AGCTGCTTGGCCAGCACCACTCGATTCTTTTTCAGTGTTTCCTGGTaGTCAGGATGCATTCCACACACTGCCAAAATCCTGCTCCTCCTG +
Preference number: 5 (lower is better)
Translates to: SCLASTTRFFFSVSW*SGCIPHTAKILLLL
Trigger: CAGGAGGAGCAGGATTTTGGCAGTGTGTGGAATGCATCCTGACCACCAGGAAACACTGAAAAAGAATCGAGTGGTGCTGGCCAAGCAGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000031895.13
ENSMUST00000156829.8
CDS CCA 90 bp AGCAGCTGCTTGGCCAGCACCACTCGATTCTTTTTCAGTGTTTCCTaGTGGTCAGGATGCATTCCACACACTGCCAAAATCCTGCTCCTC +
Preference number: 5 (lower is better)
Translates to: SSCLASTTRFFFSVS*WSGCIPHTAKILLL
Trigger: GAGGAGCAGGATTTTGGCAGTGTGTGGAATGCATCCTGACCACCAGGAAACACTGAAAAAGAATCGAGTGGTGCTGGCCAAGCAGCTGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000031895.13
ENSMUST00000156829.8
CDS-3UTR CAA 90 bp AGCTCTTTCAGAGAACACCTGAGTGAGGGCCTCAATGTACCAGGAACCCCGTTTCTCTTTGGCAGCAGGTaGAGGAGTTCCACATTCTGG +
Preference number: 5 (lower is better)
Translates to: SSFREHLSEGLNVPGTPFLFGSR*RSSTFW
Trigger: CCAGAATGTGGAACTCCTCAACCTGCTGCCAAAGAG...AAACGGGGTTCCTGGTACATTGAGGCCCTCACTCAGGTGTTCTCTGAAAGAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
CDS TCA 90 bp CACCTTCCACACCATGTGAGAGGAGTGCCACTACGCAGGAGTCTGTaGCCCGGTGTGCAGGTAACTGTGCAAAATTCTGAAGTTTCTCTT +
Preference number: 5 (lower is better)
Translates to: HLPHHVRGVPLRRSL*PGVQVTVQNSEVSL
Trigger: AAGAGAAACTTCAGAATTTTGCACAGTTACCTGCACACCGGGTCACAGACTCCTGCGTAGTGGCACTCCTCTCACATGGTGTGGAAGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031895.13
ENSMUST00000156829.8
CDS GCA 90 bp GCAACCTATAGGCCAGCTGGTAGTGTGCCTGGTAAAACTCAGGAGTaGATGGCTTCACCAGAAGACAGGGAGGACCATCACCATTATCTA +
Preference number: 5 (lower is better)
Translates to: ATYRPAGSVPGKTQE*MASPEDREDHHHYL
Trigger: TAGATAATGGTGATGGTCCTCCCTGTCTTCTGGTGAAGCCATGCACTCCTGAGTTTTACCAGGCACACTACCAGCTGGCCTATAGGTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031895.13
ENSMUST00000156829.8
CDS GCA 90 bp GAAAAACCTCTTGGAGCTGAAGCAGTTTGCCATCTACACCATAGATaGCACCTTCCACACCATGTGAGAGGAGTGCCACTACGCAGGAGT +
Preference number: 5 (lower is better)
Translates to: EKPLGAEAVCHLHHR*HLPHHVRGVPLRRS
Trigger: ACTCCTGCGTAGTGGCACTCCTCTCACATGGTGTGGAAGGTGGCATCTATGGTGTAGATGGCAAACTGCTTCAGCTCCAAGAGGTTTTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031895.13
ENSMUST00000156829.8
CDS GCA 90 bp TCACTCTCCTCACATCCAGGGGATTGTGTGTGGTTCTTTCCATCTTaGTGGTCGACACCTCTATCTGTCTCATCTCCACGACATGCTTGG +
Preference number: 5 (lower is better)
Translates to: SLSSHPGDCVWFFPS*WSTPLSVSSPRHAW
Trigger: CCAAGCATGTCGTGGAGATGAGACAGATAGAGGTGTCGACCAGCAAGATGGAAAGAACCACACACAATCCCCTGGATGTGAGGAGAGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS CCA 90 bp CTCTCCTCACATCCAGGGGATTGTGTGTGGTTCTTTCCATCTTGCTaGTCGACACCTCTATCTGTCTCATCTCCACGACATGCTTGGATG +
Preference number: 5 (lower is better)
Translates to: LSSHPGDCVWFFPSC*STPLSVSSPRHAWM
Trigger: CATCCAAGCATGTCGTGGAGATGAGACAGATAGAGGTGTCGACCAGCAAGATGGAAAGAACCACACACAATCCCCTGGATGTGAGGAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR CAA 90 bp GCCTCCGCCAGACTCAAAAATCAGAGACTAGCCAAAGGAGAGTTCAGAACACCTCTCTTTGGCAGCAGGTaGAGGAGTTCCACATTCTGG +
Preference number: 5 (lower is better)
Translates to: ASARLKNQRLAKGEFRTPLFGSR*RSSTFW
Trigger: CCAGAATGTGGAACTCCTCAACCTGCTGCCAAAGAG...AGGTGTTCTGAACTCTCCTTTGGCTAGTCTCTGATTTTTGAGTCTGGCGGAGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR CAA 90 bp GTCAAGTACAGTGTAAGTGCATGCAGAAGCCACAGTAAGGAAGGAGAGACATCCCCAGTGAAGTGCACATaGCTCAGCACCAGTGCCAAG +
Preference number: 5 (lower is better)
Translates to: VKYSVSACRSHSKEGETSPVKCT*LSTSAK
Trigger: CTTGGCACTGGTGCTGAGCAATGTGCACTTCACTGG...GGATGTCTCTCCTTCCTTACTGTGGCTTCTGCATGCACTTACACTGTACTTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS TCA 90 bp ACGCAGGAGTCTGTGACCCGGTGTGCAGGTAACTGTGCAAAATTCTaGAGTTTCTCTTGCATTTCCTGTGCGGTCTGGTCATGTAGCACA +
Preference number: 5 (lower is better)
Translates to: TQESVTRCAGNCAKF*SFSCISCAVWSCST
Trigger: TGTGCTACATGACCAGACCGCACAGGAAATGCAAGAGAAACTTCAGAATTTTGCACAGTTACCTGCACACCGGGTCACAGACTCCTGCGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031895.13
ENSMUST00000156829.8
CDS CCA 90 bp TCCTCTTTGCCAGCATCACTCTCCTCACATCCAGGGGATTGTGTGTaGTTCTTTCCATCTTGCTGGTCGACACCTCTATCTGTCTCATCT +
Preference number: 5 (lower is better)
Translates to: SSLPASLSSHPGDCV*FFPSCWSTPLSVSS
Trigger: AGATGAGACAGATAGAGGTGTCGACCAGCAAGATGGAAAGAACCACACACAATCCCCTGGATGTGAGGAGAGTGATGCTGGCAAAGAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR CAA 90 bp GCCTCCGCCAGACTCAAAAATCAGAGACTAGCCAAAGGAGAGTTCAGAACACCTTTCATCAACTCCTCTTaGCCAGCATCACTCTCCTCA +
Preference number: 5 (lower is better)
Translates to: ASARLKNQRLAKGEFRTPFINSS*PASLSS
Trigger: TGAGGAGAGTGATGCTGGCAAAGAGGAGTTGATGAA...AGGTGTTCTGAACTCTCCTTTGGCTAGTCTCTGATTTTTGAGTCTGGCGGAGGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR CAA 90 bp AGCTCTTTCAGAGAACACCTGAGTGAGGGCCTCAATGTACCAGGAACCCCGTTTACCTCCACGACATGCTaGGATGAAGAACATTTTTGG +
Preference number: 5 (lower is better)
Translates to: SSFREHLSEGLNVPGTPFTSTTC*DEEHFW
Trigger: CCAAAAATGTTCTTCATCCAAGCATGTCGTGGAGGT...AAACGGGGTTCCTGGTACATTGAGGCCCTCACTCAGGTGTTCTCTGAAAGAGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
CDS-3UTR CAA 90 bp GCCAGACTCAAAAATCAGAGACTAGCCAAAGGAGAGTTCAGAACACCTGCAAGACCGAGAAAGGGAGACTaGTGTCATAGTCACAGCTCA +
Preference number: 5 (lower is better)
Translates to: ARLKNQRLAKGEFRTPARPRKGD*CHSHSS
Trigger: TGAGCTGTGACTATGACACAAGTCTCCCTTTCTCGG...TCTTGCAGGTGTTCTGAACTCTCCTTTGGCTAGTCTCTGATTTTTGAGTCTGGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR CAA 90 bp GCACAGAGTACTACAGTACTCAGACATCTCCTTGCATCGGTGGAATTCTGTGCCATTCTGAAGTTTCTCTaGCATTTCCTGTGCGGTCTG +
Preference number: 5 (lower is better)
Translates to: AQSTTVLRHLLASVEFCAILKFL*HFLCGL
Trigger: CAGACCGCACAGGAAATGCAAGAGAAACTTCAGAAT...GGCACAGAATTCCACCGATGCAAGGAGATGTCTGAGTACTGTAGTACTCTGTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156829.8
CDS-3UTR CAA 90 bp ACTTGGTTCATACAACAAACATTAGTTGAGCACCTCAACTACCATAGGCCTCAATACCAGGAACCCCGTTaGGTGTTCCGCATGGCAGCA +
Preference number: 5 (lower is better)
Translates to: TWFIQQTLVEHLNYHRPQYQEPR*VFRMAA
Trigger: TGCTGCCATGCGGAACACCAAACGGGGTTCCTGGTA...TTGAGGCCTATGGTAGTTGAGGTGCTCAACTAATGTTTGTTGTATGAACCAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR CAA 90 bp GCTGTAGCTAAAATGCTTCTGGTAACACATCCATTCAGAGCTGGCTCTATAGGTGTGGTTCTTTCCATCTaGCTGGTCGACACCTCTATC +
Preference number: 5 (lower is better)
Translates to: AVAKMLLVTHPFRAGSIGVVLSI*LVDTSI
Trigger: GATAGAGGTGTCGACCAGCAAGATGGAAAGAACCAC...ACCTATAGAGCCAGCTCTGAATGGATGTGTTACCAGAAGCATTTTAGCTACAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR CAA 90 bp GCCAGACTCAAAAATCAGAGACTAGCCAAAGGAGAGTTCAGAACACCTGCAAGAATCTCCACGACATGCTaGGATGAAGAACATTTTTGG +
Preference number: 5 (lower is better)
Translates to: ARLKNQRLAKGEFRTPARISTTC*DEEHFW
Trigger: CCAAAAATGTTCTTCATCCAAGCATGTCGTGGAGAT...TCTTGCAGGTGTTCTGAACTCTCCTTTGGCTAGTCTCTGATTTTTGAGTCTGGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR CAA 90 bp ATTTGGCACCTGATGGCAATACAAAATCTTGGCAGTGGGAAGTGTGAAGATTCTTACTCAGACATCTCCTaGCATCGGTGGAATTCTGTG +
Preference number: 5 (lower is better)
Translates to: IWHLMAIQNLGSGKCEDSYSDIS*HRWNSV
Trigger: CACAGAATTCCACCGATGCAAGGAGATGTCTGAGTA...AGAATCTTCACACTTCCCACTGCCAAGATTTTGTATTGCCATCAGGTGCCAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS-3UTR CAA 90 bp TCCAAATGCCCTCTTCCCACAATAATACTGTGTTCACAATGTCATTTTCTAGGCATTCTGAAGTTTCTCTaGCATTTCCTGTGCGGTCTG +
Preference number: 5 (lower is better)
Translates to: SKCPLPTIILCSQCHFLGILKFL*HFLCGL
Trigger: CAGACCGCACAGGAAATGCAAGAGAAACTTCAGAAT...GCCTAGAAAATGACATTGTGAACACAGTATTATTGTGGGAAGAGGGCATTTGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS GCA 72 bp GGTGGTCAGGATGCATTCCACACACTGCCAAAATCCTaGTCCTCCTGTCAGCCGCCATCAGCCCCTTCCTGT +
Preference number: 6 (lower is better)
Translates to: GGQDAFHTLPKS*SSCQPPSAPSC
Trigger: ACAGGAAGGGGCTGATGGCGGCTGACAGGAGGAGCAGGATTTTGGCAGTGTGTGGAATGCATCCTGACCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031895.13
ENSMUST00000156829.8
CDS TCA 72 bp TGTTCCGTAGCATCTGTGGATAGGCGGAGCTGCTTGTaGGGAGGGCAGGACTCACACACCGAGAAAGGGAGA +
Preference number: 6 (lower is better)
Translates to: CSVASVDRRSCL*GGQDSHTEKGR
Trigger: TCTCCCTTTCTCGGTGTGTGAGTCCTGCCCTCCTCACAAGCAGCTCCGCCTATCCACAGATGCTACGGAACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031895.13
ENSMUST00000156829.8
CDS TCA 72 bp GCCATCTACACCATAGATGCCACCTTCCACACCATGTaGGAGGAGTGCCACTACGCAGGAGTCTGTGACCCG +
Preference number: 6 (lower is better)
Translates to: AIYTIDATFHTM*EECHYAGVCDP
Trigger: CGGGTCACAGACTCCTGCGTAGTGGCACTCCTCTCACATGGTGTGGAAGGTGGCATCTATGGTGTAGATGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031895.13
ENSMUST00000156829.8
CDS CCA 72 bp CCTCTCTTTGGCAGCAGGTTGAGGAGTTCCACATTCTaGCTGAAACTGCCCCCTTTGGCCTGGATGAGCTCC +
Preference number: 6 (lower is better)
Translates to: PLFGSRLRSSTF*LKLPPLAWMSS
Trigger: GGAGCTCATCCAGGCCAAAGGGGGCAGTTTCAGCCAGAATGTGGAACTCCTCAACCTGCTGCCAAAGAGAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031895.13
ENSMUST00000156829.8
CDS CAA 72 bp ATTGCTCAGCACCAGTGCCAAGCCACGGGGCTGAGATaGCAACCTATAGGCCAGCTGGTAGTGTGCCTGGTA +
Preference number: 6 (lower is better)
Translates to: IAQHQCQATGLR*QPIGQLVVCLV
Trigger: TACCAGGCACACTACCAGCTGGCCTATAGGTTGCAATCTCAGCCCCGTGGCTTGGCACTGGTGCTGAGCAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031895.13
ENSMUST00000156829.8
CDS CAA 90 bp GAAGTGCACATTGCTCAGCACCAGTGCCAAGCCACGGGGCTGAGATaGCAACCTATAGGCCAGCTGGTAGTGTGCCTGGTAAAACTCAGG +
Preference number: 6 (lower is better)
Translates to: EVHIAQHQCQATGLR*QPIGQLVVCLVKLR
Trigger: CCTGAGTTTTACCAGGCACACTACCAGCTGGCCTATAGGTTGCAATCTCAGCCCCGTGGCTTGGCACTGGTGCTGAGCAATGTGCACTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031895.13
ENSMUST00000156829.8
CDS GCA 72 bp CAGTGTTTCCTGGTGGTCAGGATGCATTCCACACACTaGCAAAATCCTGCTCCTCCTGTCAGCCGCCATCAG +
Preference number: 6 (lower is better)
Translates to: QCFLVVRMHSTH*QNPAPPVSRHQ
Trigger: CTGATGGCGGCTGACAGGAGGAGCAGGATTTTGGCAGTGTGTGGAATGCATCCTGACCACCAGGAAACACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031895.13
ENSMUST00000156829.8
CDS GCA 72 bp AGGCCAGCTGGTAGTGTGCCTGGTAAAACTCAGGAGTaGATGGCTTCACCAGAAGACAGGGAGGACCATCAC +
Preference number: 6 (lower is better)
Translates to: RPAGSVPGKTQE*MASPEDREDHH
Trigger: GTGATGGTCCTCCCTGTCTTCTGGTGAAGCCATGCACTCCTGAGTTTTACCAGGCACACTACCAGCTGGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031895.13
ENSMUST00000156829.8
CDS CAA 72 bp GAGGAGGGCAGGACTCACACACCGAGAAAGGGAGACTaGTGTCATAGTCACAGCTCAACGGTGGGAGTACGT +
Preference number: 6 (lower is better)
Translates to: EEGRTHTPRKGD*CHSHSSTVGVR
Trigger: ACGTACTCCCACCGTTGAGCTGTGACTATGACACAAGTCTCCCTTTCTCGGTGTGTGAGTCCTGCCCTCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031895.13
ENSMUST00000156829.8
CDS TCA 72 bp ATATCTGAGAGGGTTGTGAGCAGTAAGTCTTCCAAGTaGCCCTGCCTGGTCTCCCGCAGGGCTTCACAGAAG +
Preference number: 6 (lower is better)
Translates to: ISERVVSSKSSK*PCLVSRRASQK
Trigger: CTTCTGTGAAGCCCTGCGGGAGACCAGGCAGGGTCACTTGGAAGACTTACTGCTCACAACCCTCTCAGATAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031895.13
ENSMUST00000156829.8
CDS GCA 72 bp GGGCTGAGATTGCAACCTATAGGCCAGCTGGTAGTGTaGCTGGTAAAACTCAGGAGTGCATGGCTTCACCAG +
Preference number: 6 (lower is better)
Translates to: GLRLQPIGQLVV*LVKLRSAWLHQ
Trigger: CTGGTGAAGCCATGCACTCCTGAGTTTTACCAGGCACACTACCAGCTGGCCTATAGGTTGCAATCTCAGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031895.13
ENSMUST00000156829.8
CDS GCA 72 bp TTTCTCTCCAGTGAAGTGCACATTGCTCAGCACCAGTaGCAAGCCACGGGGCTGAGATTGCAACCTATAGGC +
Preference number: 6 (lower is better)
Translates to: FLSSEVHIAQHQ*QATGLRLQPIG
Trigger: GCCTATAGGTTGCAATCTCAGCCCCGTGGCTTGGCACTGGTGCTGAGCAATGTGCACTTCACTGGAGAGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031895.13
ENSMUST00000156829.8
CDS CAA 90 bp GCTGCTTGTGAGGAGGGCAGGACTCACACACCGAGAAAGGGAGACTaGTGTCATAGTCACAGCTCAACGGTGGGAGTACGTGCTGAATAT +
Preference number: 6 (lower is better)
Translates to: AACEEGRTHTPRKGD*CHSHSSTVGVRAEY
Trigger: ATATTCAGCACGTACTCCCACCGTTGAGCTGTGACTATGACACAAGTCTCCCTTTCTCGGTGTGTGAGTCCTGCCCTCCTCACAAGCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031895.13
ENSMUST00000156829.8
CDS TCA 72 bp ACGGTGGGAGTACGTGCTGAATATCTGAGAGGGTTGTaGGCAGTAAGTCTTCCAAGTGACCCTGCCTGGTCT +
Preference number: 6 (lower is better)
Translates to: TVGVRAEYLRGL*AVSLPSDPAWS
Trigger: AGACCAGGCAGGGTCACTTGGAAGACTTACTGCTCACAACCCTCTCAGATATTCAGCACGTACTCCCACCGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031895.13
ENSMUST00000156829.8
CDS TCA 72 bp CACCATGTGAGAGGAGTGCCACTACGCAGGAGTCTGTaGCCCGGTGTGCAGGTAACTGTGCAAAATTCTGAA +
Preference number: 6 (lower is better)
Translates to: HHVRGVPLRRSL*PGVQVTVQNSE
Trigger: TTCAGAATTTTGCACAGTTACCTGCACACCGGGTCACAGACTCCTGCGTAGTGGCACTCCTCTCACATGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031895.13
ENSMUST00000156829.8
CDS CAA 72 bp AGGAGGTGTTCTAACAGCTCGCTCAGCAGCAGCTGCTaGGCCAGCACCACTCGATTCTTTTTCAGTGTTTCC +
Preference number: 6 (lower is better)
Translates to: RRCSNSSLSSSC*ASTTRFFFSVS
Trigger: GGAAACACTGAAAAAGAATCGAGTGGTGCTGGCCAAGCAGCTGCTGCTGAGCGAGCTGTTAGAACACCTCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031895.13
ENSMUST00000156829.8
CDS CAA 90 bp TCCTTCTCTAGGAGGTGTTCTAACAGCTCGCTCAGCAGCAGCTGCTaGGCCAGCACCACTCGATTCTTTTTCAGTGTTTCCTGGTGGTCA +
Preference number: 6 (lower is better)
Translates to: SFSRRCSNSSLSSSC*ASTTRFFFSVSWWS
Trigger: TGACCACCAGGAAACACTGAAAAAGAATCGAGTGGTGCTGGCCAAGCAGCTGCTGCTGAGCGAGCTGTTAGAACACCTCCTAGAGAAGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031895.13
ENSMUST00000156829.8
CDS GCA 72 bp TCTAGGAGGTGTTCTAACAGCTCGCTCAGCAGCAGCTaGTTGGCCAGCACCACTCGATTCTTTTTCAGTGTT +
Preference number: 6 (lower is better)
Translates to: SRRCSNSSLSSS*LASTTRFFFSV
Trigger: AACACTGAAAAAGAATCGAGTGGTGCTGGCCAAGCAGCTGCTGCTGAGCGAGCTGTTAGAACACCTCCTAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031895.13
ENSMUST00000156829.8
CDS CAA 72 bp CTCACATCCAGGGGATTGTGTGTGGTTCTTTCCATCTaGCTGGTCGACACCTCTATCTGTCTCATCTCCACG +
Preference number: 6 (lower is better)
Translates to: LTSRGLCVVLSI*LVDTSICLIST
Trigger: CGTGGAGATGAGACAGATAGAGGTGTCGACCAGCAAGATGGAAAGAACCACACACAATCCCCTGGATGTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS CAA 90 bp ATCACTCTCCTCACATCCAGGGGATTGTGTGTGGTTCTTTCCATCTaGCTGGTCGACACCTCTATCTGTCTCATCTCCACGACATGCTTG +
Preference number: 6 (lower is better)
Translates to: ITLLTSRGLCVVLSI*LVDTSICLISTTCL
Trigger: CAAGCATGTCGTGGAGATGAGACAGATAGAGGTGTCGACCAGCAAGATGGAAAGAACCACACACAATCCCCTGGATGTGAGGAGAGTGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS GCA 72 bp TCACATCCAGGGGATTGTGTGTGGTTCTTTCCATCTTaGTGGTCGACACCTCTATCTGTCTCATCTCCACGA +
Preference number: 6 (lower is better)
Translates to: SHPGDCVWFFPS*WSTPLSVSSPR
Trigger: TCGTGGAGATGAGACAGATAGAGGTGTCGACCAGCAAGATGGAAAGAACCACACACAATCCCCTGGATGTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS CCA 72 bp GCCAGCACCACTCGATTCTTTTTCAGTGTTTCCTGGTaGTCAGGATGCATTCCACACACTGCCAAAATCCTG +
Preference number: 6 (lower is better)
Translates to: ASTTRFFFSVSW*SGCIPHTAKIL
Trigger: CAGGATTTTGGCAGTGTGTGGAATGCATCCTGACCACCAGGAAACACTGAAAAAGAATCGAGTGGTGCTGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000031895.13
ENSMUST00000156829.8
CDS CCA 72 bp CATCCAGGGGATTGTGTGTGGTTCTTTCCATCTTGCTaGTCGACACCTCTATCTGTCTCATCTCCACGACAT +
Preference number: 6 (lower is better)
Translates to: HPGDCVWFFPSC*STPLSVSSPRH
Trigger: ATGTCGTGGAGATGAGACAGATAGAGGTGTCGACCAGCAAGATGGAAAGAACCACACACAATCCCCTGGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13
CDS CAA 90 bp TCTGTCTCATCTCCACGACATGCTTGGATGAAGAACATTTTTGGCTaGTTCTGTAGACTTGGACAGTTAGCATTGTCAAAAAGTCGAAAA +
Preference number: 6 (lower is better)
Translates to: SVSSPRHAWMKNIFG*FCRLGQLALSKSRK
Trigger: TTTTCGACTTTTTGACAATGCTAACTGTCCAAGTCTACAGAACAAGCCAAAAATGTTCTTCATCCAAGCATGTCGTGGAGATGAGACAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000031895.13